Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000930 | XP_003620787.4 | 95.930 | 172 | 6 | 1 | 1 | 172 | 1 | 171 | 3.17e-114 | 331 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000930 | sp|Q9LVB9|OXS3_ARATH | 58.427 | 89 | 33 | 2 | 62 | 146 | 72 | 160 | 2.06e-23 | 94.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000930 | G7KI10 | 95.930 | 172 | 6 | 1 | 1 | 172 | 1 | 171 | 1.52e-114 | 331 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006850 | Msa1000930 | -0.800750 | 1.244584e-48 | -8.615850e-47 |
| Msa0015460 | Msa1000930 | 0.820625 | 6.213654e-53 | -8.615850e-47 |
| Msa0015480 | Msa1000930 | 0.800099 | 1.689632e-48 | -8.615850e-47 |
| Msa0030280 | Msa1000930 | 0.805557 | 1.260463e-49 | -8.615850e-47 |
| Msa0031520 | Msa1000930 | 0.820740 | 5.846420e-53 | -8.615850e-47 |
| Msa0041720 | Msa1000930 | 0.804137 | 2.495194e-49 | -8.615850e-47 |
| Msa0047280 | Msa1000930 | 0.815855 | 7.465205e-52 | -8.615850e-47 |
| Msa0067870 | Msa1000930 | 0.803283 | 3.754020e-49 | -8.615850e-47 |
| Msa0097850 | Msa1000930 | 0.808117 | 3.625196e-50 | -8.615850e-47 |
| Msa0101180 | Msa1000930 | 0.802123 | 6.514411e-49 | -8.615850e-47 |
| Msa0101880 | Msa1000930 | 0.807306 | 5.389780e-50 | -8.615850e-47 |
| Msa0109590 | Msa1000930 | 0.824831 | 6.520749e-54 | -8.615850e-47 |
| Msa0115270 | Msa1000930 | 0.806853 | 6.724109e-50 | -8.615850e-47 |
| Msa0115390 | Msa1000930 | 0.805326 | 1.408967e-49 | -8.615850e-47 |
| Msa0118000 | Msa1000930 | 0.804097 | 2.543379e-49 | -8.615850e-47 |
| Msa0602980 | Msa1000930 | 0.802968 | 4.361593e-49 | -8.615850e-47 |
| Msa0616240 | Msa1000930 | 0.812357 | 4.416025e-51 | -8.615850e-47 |
| Msa0625790 | Msa1000930 | 0.811635 | 6.342406e-51 | -8.615850e-47 |
| Msa0633760 | Msa1000930 | 0.812359 | 4.411591e-51 | -8.615850e-47 |
| Msa0640500 | Msa1000930 | 0.800799 | 1.216292e-48 | -8.615850e-47 |
| Msa0661710 | Msa1000930 | 0.815448 | 9.196256e-52 | -8.615850e-47 |
| Msa0663910 | Msa1000930 | 0.835484 | 1.633196e-56 | -8.615850e-47 |
| Msa0664970 | Msa1000930 | 0.804666 | 1.936180e-49 | -8.615850e-47 |
| Msa0677770 | Msa1000930 | 0.803950 | 2.729223e-49 | -8.615850e-47 |
| Msa0689780 | Msa1000930 | 0.809908 | 1.499409e-50 | -8.615850e-47 |
| Msa0698030 | Msa1000930 | 0.816337 | 5.825347e-52 | -8.615850e-47 |
| Msa0699570 | Msa1000930 | 0.812533 | 4.041729e-51 | -8.615850e-47 |
| Msa0705600 | Msa1000930 | 0.816952 | 4.240672e-52 | -8.615850e-47 |
| Msa0716420 | Msa1000930 | -0.809824 | 1.562939e-50 | -8.615850e-47 |
| Msa0748920 | Msa1000930 | 0.862290 | 5.628353e-64 | -8.615850e-47 |
| Msa0753770 | Msa1000930 | 0.801827 | 7.491378e-49 | -8.615850e-47 |
| Msa0758230 | Msa1000930 | 0.833162 | 6.249561e-56 | -8.615850e-47 |
| Msa0779090 | Msa1000930 | 0.800141 | 1.656522e-48 | -8.615850e-47 |
| Msa0790610 | Msa1000930 | 0.823887 | 1.087126e-53 | -8.615850e-47 |
| Msa0794050 | Msa1000930 | 0.810733 | 9.955167e-51 | -8.615850e-47 |
| Msa0799010 | Msa1000930 | -0.803004 | 4.286520e-49 | -8.615850e-47 |
| Msa0804810 | Msa1000930 | 0.805572 | 1.251127e-49 | -8.615850e-47 |
| Msa0805450 | Msa1000930 | 0.802472 | 5.519141e-49 | -8.615850e-47 |
| Msa0818170 | Msa1000930 | 0.802287 | 6.026318e-49 | -8.615850e-47 |
| Msa0126770 | Msa1000930 | 0.802200 | 6.280039e-49 | -8.615850e-47 |
| Msa0139990 | Msa1000930 | 0.815380 | 9.523867e-52 | -8.615850e-47 |
| Msa0140520 | Msa1000930 | -0.800690 | 1.280175e-48 | -8.615850e-47 |
| Msa0150990 | Msa1000930 | 0.809075 | 2.263668e-50 | -8.615850e-47 |
| Msa0155880 | Msa1000930 | 0.828974 | 6.672035e-55 | -8.615850e-47 |
| Msa0186310 | Msa1000930 | 0.811866 | 5.650039e-51 | -8.615850e-47 |
| Msa0188890 | Msa1000930 | 0.824861 | 6.416963e-54 | -8.615850e-47 |
| Msa0197520 | Msa1000930 | 0.800632 | 1.315790e-48 | -8.615850e-47 |
| Msa0197660 | Msa1000930 | 0.800879 | 1.171495e-48 | -8.615850e-47 |
| Msa0207350 | Msa1000930 | 0.823499 | 1.340267e-53 | -8.615850e-47 |
| Msa0212750 | Msa1000930 | -0.822478 | 2.318996e-53 | -8.615850e-47 |
| Msa0231380 | Msa1000930 | 0.826447 | 2.700055e-54 | -8.615850e-47 |
| Msa0233380 | Msa1000930 | 0.805436 | 1.336186e-49 | -8.615850e-47 |
| Msa0235630 | Msa1000930 | 0.807116 | 5.915465e-50 | -8.615850e-47 |
| Msa0238230 | Msa1000930 | 0.823682 | 1.214654e-53 | -8.615850e-47 |
| Msa0374250 | Msa1000930 | 0.802298 | 5.995269e-49 | -8.615850e-47 |
| Msa0379570 | Msa1000930 | 0.800993 | 1.110343e-48 | -8.615850e-47 |
| Msa0386040 | Msa1000930 | 0.810479 | 1.129300e-50 | -8.615850e-47 |
| Msa0387880 | Msa1000930 | -0.801147 | 1.033004e-48 | -8.615850e-47 |
| Msa0431770 | Msa1000930 | 0.842537 | 2.433371e-58 | -8.615850e-47 |
| Msa0435690 | Msa1000930 | 0.814387 | 1.581209e-51 | -8.615850e-47 |
| Msa0437510 | Msa1000930 | 0.808877 | 2.495659e-50 | -8.615850e-47 |
| Msa0455740 | Msa1000930 | 0.806190 | 9.279866e-50 | -8.615850e-47 |
| Msa0465960 | Msa1000930 | 0.826498 | 2.624497e-54 | -8.615850e-47 |
| Msa0466760 | Msa1000930 | 0.807265 | 5.499477e-50 | -8.615850e-47 |
| Msa0469620 | Msa1000930 | -0.805277 | 1.442905e-49 | -8.615850e-47 |
| Msa0994390 | Msa1000930 | 0.832496 | 9.145937e-56 | -8.615850e-47 |
| Msa1000860 | Msa1000930 | 0.824957 | 6.091701e-54 | -8.615850e-47 |
| Msa1000890 | Msa1000930 | 0.833924 | 4.032376e-56 | -8.615850e-47 |
| Msa1000900 | Msa1000930 | 0.827436 | 1.566083e-54 | -8.615850e-47 |
| Msa1000930 | Msa1000940 | 0.808519 | 2.976857e-50 | -8.615850e-47 |
| Msa1000930 | Msa1002600 | -0.800974 | 1.120141e-48 | -8.615850e-47 |
| Msa1000930 | Msa1004420 | 0.812426 | 4.265226e-51 | -8.615850e-47 |
| Msa1000930 | Msa1012590 | -0.828683 | 7.844565e-55 | -8.615850e-47 |
| Msa1000930 | Msa1025260 | 0.802553 | 5.310890e-49 | -8.615850e-47 |
| Msa1000930 | Msa1033970 | 0.812852 | 3.442092e-51 | -8.615850e-47 |
| Msa1000930 | Msa1037420 | 0.805079 | 1.586921e-49 | -8.615850e-47 |
| Msa1000930 | Msa1054150 | -0.805202 | 1.495812e-49 | -8.615850e-47 |
| Msa1000930 | Msa1064250 | 0.807228 | 5.600722e-50 | -8.615850e-47 |
| Msa1000930 | Msa1071530 | 0.805685 | 1.184786e-49 | -8.615850e-47 |
| Msa1000930 | Msa1080310 | 0.806533 | 7.856755e-50 | -8.615850e-47 |
| Msa1000930 | Msa1094540 | -0.802295 | 6.004450e-49 | -8.615850e-47 |
| Msa1000930 | Msa1103660 | -0.801500 | 8.744694e-49 | -8.615850e-47 |
| Msa1000930 | Msa1109570 | 0.805701 | 1.175710e-49 | -8.615850e-47 |
| Msa1000930 | Msa1173300 | 0.803139 | 4.019357e-49 | -8.615850e-47 |
| Msa1000930 | Msa1182770 | 0.808983 | 2.368894e-50 | -8.615850e-47 |
| Msa1000930 | Msa1205160 | -0.809039 | 2.304218e-50 | -8.615850e-47 |
| Msa1000930 | Msa1213770 | 0.856427 | 3.242071e-62 | -8.615850e-47 |
| Msa1000930 | Msa1227730 | 0.830067 | 3.618122e-55 | -8.615850e-47 |
| Msa1000930 | Msa1250210 | -0.808297 | 3.318518e-50 | -8.615850e-47 |
| Msa1000930 | Msa1253810 | 0.845284 | 4.470783e-59 | -8.615850e-47 |
| Msa1000930 | Msa1276340 | 0.818330 | 2.073746e-52 | -8.615850e-47 |
| Msa1000930 | Msa1323990 | 0.821066 | 4.920543e-53 | -8.615850e-47 |
| Msa1000930 | Msa1331080 | 0.840465 | 8.552828e-58 | -8.615850e-47 |
| Msa1000930 | Msa1358670 | 0.812623 | 3.863422e-51 | -8.615850e-47 |
| Msa1000930 | Msa1359270 | 0.832843 | 7.501377e-56 | -8.615850e-47 |
| Msa1000930 | Msa1390120 | 0.812318 | 4.502158e-51 | -8.615850e-47 |
| Msa1000930 | Msa1390700 | 0.801738 | 7.814647e-49 | -8.615850e-47 |
| Msa1000930 | Msa1420270 | 0.814434 | 1.543809e-51 | -8.615850e-47 |
| Msa1000930 | Msa1439710 | 0.805346 | 1.395165e-49 | -8.615850e-47 |
| Msa1000930 | Msa1449910 | 0.809943 | 1.473793e-50 | -8.615850e-47 |
| Msa1000930 | Msa1454450 | 0.829246 | 5.729439e-55 | -8.615850e-47 |
| Msa1000930 | Msa1454950 | 0.817227 | 3.678436e-52 | -8.615850e-47 |
| Msa1000930 | Msa1457160 | 0.809352 | 1.974654e-50 | -8.615850e-47 |
| Msa1000930 | Msa1460320 | -0.808779 | 2.619169e-50 | -8.615850e-47 |
| Msa1000930 | Msa1461490 | 0.820941 | 5.255402e-53 | -8.615850e-47 |
| Msa0239800 | Msa1000930 | 0.807734 | 4.372916e-50 | -8.615850e-47 |
| Msa0259160 | Msa1000930 | 0.805256 | 1.457228e-49 | -8.615850e-47 |
| Msa0259210 | Msa1000930 | 0.807784 | 4.268728e-50 | -8.615850e-47 |
| Msa0261360 | Msa1000930 | 0.812601 | 3.906414e-51 | -8.615850e-47 |
| Msa0270660 | Msa1000930 | 0.824358 | 8.428393e-54 | -8.615850e-47 |
| Msa0296820 | Msa1000930 | 0.806678 | 7.319119e-50 | -8.615850e-47 |
| Msa0311730 | Msa1000930 | 0.819515 | 1.115513e-52 | -8.615850e-47 |
| Msa0336310 | Msa1000930 | 0.806850 | 6.733612e-50 | -8.615850e-47 |
| Msa0336320 | Msa1000930 | 0.809225 | 2.101594e-50 | -8.615850e-47 |
| Msa0340690 | Msa1000930 | 0.831328 | 1.777046e-55 | -8.615850e-47 |
| Msa0340710 | Msa1000930 | 0.831380 | 1.725454e-55 | -8.615850e-47 |
| Msa0517090 | Msa1000930 | 0.820372 | 7.102695e-53 | -8.615850e-47 |
| Msa0524600 | Msa1000930 | 0.803052 | 4.189658e-49 | -8.615850e-47 |
| Msa0530100 | Msa1000930 | 0.803670 | 3.120844e-49 | -8.615850e-47 |
| Msa0589390 | Msa1000930 | 0.808197 | 3.485467e-50 | -8.615850e-47 |
| Msa0597000 | Msa1000930 | 0.810329 | 1.216981e-50 | -8.615850e-47 |
| Msa0844390 | Msa1000930 | 0.806559 | 7.757718e-50 | -8.615850e-47 |
| Msa0860900 | Msa1000930 | -0.804509 | 2.088217e-49 | -8.615850e-47 |
| Msa0888990 | Msa1000930 | 0.832132 | 1.125666e-55 | -8.615850e-47 |
| Msa0890300 | Msa1000930 | 0.823828 | 1.122791e-53 | -8.615850e-47 |
| Msa0895310 | Msa1000930 | 0.810031 | 1.410744e-50 | -8.615850e-47 |
| Msa0897200 | Msa1000930 | 0.803838 | 2.879388e-49 | -8.615850e-47 |
| Msa0898890 | Msa1000930 | 0.818840 | 1.589156e-52 | -8.615850e-47 |
| Msa0901110 | Msa1000930 | 0.852167 | 5.513822e-61 | -8.615850e-47 |
| Msa0903620 | Msa1000930 | 0.810717 | 1.003084e-50 | -8.615850e-47 |
| Msa0923780 | Msa1000930 | 0.801105 | 1.053297e-48 | -8.615850e-47 |
| Msa0936300 | Msa1000930 | 0.811772 | 5.922124e-51 | -8.615850e-47 |
| Msa0937330 | Msa1000930 | 0.806199 | 9.239477e-50 | -8.615850e-47 |
| Msa0944610 | Msa1000930 | 0.826133 | 3.206904e-54 | -8.615850e-47 |
| Msa0944870 | Msa1000930 | 0.814028 | 1.897873e-51 | -8.615850e-47 |
| Msa0947530 | Msa1000930 | -0.815131 | 1.081842e-51 | -8.615850e-47 |
| Msa0951400 | Msa1000930 | 0.804531 | 2.065607e-49 | -8.615850e-47 |
| Msa0960740 | Msa1000930 | 0.818430 | 1.968140e-52 | -8.615850e-47 |
| Msa0962840 | Msa1000930 | 0.813500 | 2.480990e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000930 | MtrunA17_Chr6g0487221 | 95.930 | 172 | 6 | 1 | 1 | 172 | 39 | 209 | 6.04e-118 | 332 |
| Msa1000930 | MtrunA17_Chr8g0389751 | 50.617 | 162 | 57 | 6 | 1 | 147 | 1 | 154 | 1.04e-28 | 103 |
| Msa1000930 | MtrunA17_Chr3g0109691 | 52.174 | 92 | 31 | 2 | 65 | 156 | 76 | 154 | 1.37e-21 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1000930 | AT5G56550.1 | 58.427 | 89 | 33 | 2 | 62 | 146 | 72 | 160 | 2.09e-24 | 94.0 |
| Msa1000930 | AT4G26288.1 | 51.887 | 106 | 30 | 5 | 47 | 144 | 40 | 132 | 6.39e-16 | 71.2 |
Find 29 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTAATAAAGATGAACTTAA+AGG | 0.150671 | 6_4:-84290864 | None:intergenic |
| CTTATATATATAAGAATTAT+TGG | 0.177043 | 6_4:-84289495 | None:intergenic |
| GATGAAATTGCATACTTTAT+AGG | 0.231922 | 6_4:-84289828 | None:intergenic |
| AATTAGTGATAGTTTGTTTC+AGG | 0.233915 | 6_4:+84290957 | Msa1000930:three_prime_UTR |
| CCTTTAAGTTCATCTTTATT+AGG | 0.260098 | 6_4:+84290864 | Msa1000930:CDS |
| AACACAATCTAGGATATAAT+TGG | 0.364081 | 6_4:+84289462 | None:intergenic |
| AATGAATGTGAAGGGAATAA+TGG | 0.371118 | 6_4:+84289602 | Msa1000930:exon |
| ATGAAGTCATGTAGAAGTTA+TGG | 0.374322 | 6_4:+84290771 | Msa1000930:CDS |
| TAGAAGTTATGGAGGAGGTT+TGG | 0.410155 | 6_4:+84290782 | Msa1000930:CDS |
| GTTTGGATAATCATAGAATA+TGG | 0.415366 | 6_4:+84290799 | Msa1000930:CDS |
| TCTTCATCATCACATTCAAA+TGG | 0.424478 | 6_4:+84289768 | Msa1000930:CDS |
| TTCTTGTGTACAACAATTGA+AGG | 0.439362 | 6_4:-84290918 | None:intergenic |
| AAACATGAAGTGGATGGTTA+AGG | 0.446369 | 6_4:+84289641 | Msa1000930:CDS |
| TCATCTTTATTAGGCAAAAG+AGG | 0.482739 | 6_4:+84290873 | Msa1000930:CDS |
| CATCTTTATTAGGCAAAAGA+GGG | 0.516192 | 6_4:+84290874 | Msa1000930:CDS |
| ATTTCTTGAAATGAATGTGA+AGG | 0.520984 | 6_4:+84289593 | Msa1000930:exon |
| AGTGATTCAACAACATCCAT+TGG | 0.529919 | 6_4:+84289672 | Msa1000930:CDS |
| TCATGTAGAAGTTATGGAGG+AGG | 0.533647 | 6_4:+84290777 | Msa1000930:CDS |
| TTTCTTGAAATGAATGTGAA+GGG | 0.535143 | 6_4:+84289594 | Msa1000930:exon |
| ACAACAATTGAAGGTCTAGA+AGG | 0.538516 | 6_4:-84290909 | None:intergenic |
| ATCTTTCACCTCTTTAGCAG+AGG | 0.547544 | 6_4:+84290698 | Msa1000930:CDS |
| AAGTCATGTAGAAGTTATGG+AGG | 0.581965 | 6_4:+84290774 | Msa1000930:CDS |
| TAGAATATGGTATAGTCCAA+AGG | 0.592131 | 6_4:+84290812 | Msa1000930:CDS |
| ATCTTCTGAGAATGTTCCAA+TGG | 0.596281 | 6_4:-84289688 | None:intergenic |
| CACTTGTATCGATATCGTAT+CGG | 0.601728 | 6_4:-84291024 | None:intergenic |
| ATGTCAGATATTAGAAGTGT+CGG | 0.602636 | 6_4:-84290990 | None:intergenic |
| TGCAAGAAACATGAAGTGGA+TGG | 0.612939 | 6_4:+84289635 | Msa1000930:CDS |
| ATAGTGCAAGAAACATGAAG+TGG | 0.643670 | 6_4:+84289631 | Msa1000930:CDS |
| TTGTTCATCAGATTTGACTG+AGG | 0.665115 | 6_4:+84289731 | Msa1000930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTATATATATAAGAATTAT+TGG | - | chr6_4:84289498-84289517 | None:intergenic | 10.0% |
| !! | AATAAAACTTATAAAAATGA+AGG | - | chr6_4:84289853-84289872 | None:intergenic | 10.0% |
| !!! | TTATAAGTTTTATTCAAAAA+AGG | + | chr6_4:84289859-84289878 | Msa1000930:intron | 10.0% |
| !!! | TATAAGTTTTATTCAAAAAA+GGG | + | chr6_4:84289860-84289879 | Msa1000930:intron | 10.0% |
| !! | CTTATATATATAAGAATTAT+TGG | - | chr6_4:84289498-84289517 | None:intergenic | 10.0% |
| !! | AATAAAACTTATAAAAATGA+AGG | - | chr6_4:84289853-84289872 | None:intergenic | 10.0% |
| !!! | TTATAAGTTTTATTCAAAAA+AGG | + | chr6_4:84289859-84289878 | Msa1000930:intron | 10.0% |
| !!! | TATAAGTTTTATTCAAAAAA+GGG | + | chr6_4:84289860-84289879 | Msa1000930:intron | 10.0% |
| !! | AAAGAACTAATTAATATGTA+CGG | + | chr6_4:84290263-84290282 | Msa1000930:intron | 15.0% |
| !! | TAAACTAATAATTACGTAAA+AGG | + | chr6_4:84290342-84290361 | Msa1000930:intron | 15.0% |
| !!! | TAATTTTTACTTTTTAGATG+TGG | + | chr6_4:84290593-84290612 | Msa1000930:intron | 15.0% |
| !! | AAAGAACTAATTAATATGTA+CGG | + | chr6_4:84290263-84290282 | Msa1000930:intron | 15.0% |
| !! | TAAACTAATAATTACGTAAA+AGG | + | chr6_4:84290342-84290361 | Msa1000930:intron | 15.0% |
| !!! | TAATTTTTACTTTTTAGATG+TGG | + | chr6_4:84290593-84290612 | Msa1000930:intron | 15.0% |
| !!! | TTTTGCATCTCAATAATTTT+AGG | - | chr6_4:84290305-84290324 | None:intergenic | 20.0% |
| !!! | AACAATTTTCTTGACAAAAA+TGG | - | chr6_4:84290409-84290428 | None:intergenic | 20.0% |
| !! | TTATATCAATCTATCTATCA+CGG | - | chr6_4:84290562-84290581 | None:intergenic | 20.0% |
| !!! | TTTTGCATCTCAATAATTTT+AGG | - | chr6_4:84290305-84290324 | None:intergenic | 20.0% |
| !!! | AACAATTTTCTTGACAAAAA+TGG | - | chr6_4:84290409-84290428 | None:intergenic | 20.0% |
| !! | TTATATCAATCTATCTATCA+CGG | - | chr6_4:84290562-84290581 | None:intergenic | 20.0% |
| ! | ATTTCTTGAAATGAATGTGA+AGG | + | chr6_4:84289593-84289612 | Msa1000930:exon | 25.0% |
| ! | TTTCTTGAAATGAATGTGAA+GGG | + | chr6_4:84289594-84289613 | Msa1000930:exon | 25.0% |
| ! | GATGAAATTGCATACTTTAT+AGG | - | chr6_4:84289831-84289850 | None:intergenic | 25.0% |
| ! | ATAAAAGACACCTTCATAAA+AGG | - | chr6_4:84289901-84289920 | None:intergenic | 25.0% |
| !!! | GTAGTGACATTTTTTTTGAA+GGG | - | chr6_4:84290066-84290085 | None:intergenic | 25.0% |
| !!! | AGTAGTGACATTTTTTTTGA+AGG | - | chr6_4:84290067-84290086 | None:intergenic | 25.0% |
| ! | CATACATATTTGTCAAACTT+AGG | - | chr6_4:84290125-84290144 | None:intergenic | 25.0% |
| ! | ACCAAAAACTAATCTAAACA+AGG | - | chr6_4:84290148-84290167 | None:intergenic | 25.0% |
| ! | CATAATTGAGTTTGATTCTT+CGG | - | chr6_4:84290228-84290247 | None:intergenic | 25.0% |
| ! | TGTCAAGAAAATTGTTACAT+AGG | + | chr6_4:84290413-84290432 | Msa1000930:intron | 25.0% |
| ! | GTAATTATCTAGATCTATGA+AGG | - | chr6_4:84290533-84290552 | None:intergenic | 25.0% |
| !!! | AATTAGTTTATGACTTTTGC+AGG | + | chr6_4:84290640-84290659 | Msa1000930:intron | 25.0% |
| ! | GTTTGGATAATCATAGAATA+TGG | + | chr6_4:84290799-84290818 | Msa1000930:CDS | 25.0% |
| !!! | TTTTTTGATATTGTAGCCTT+TGG | - | chr6_4:84290831-84290850 | None:intergenic | 25.0% |
| ! | ATATCAAAAAAAGCTTCAAG+AGG | + | chr6_4:84290840-84290859 | Msa1000930:CDS | 25.0% |
| ! | TATCAAAAAAAGCTTCAAGA+GGG | + | chr6_4:84290841-84290860 | Msa1000930:CDS | 25.0% |
| ! | CCTAATAAAGATGAACTTAA+AGG | - | chr6_4:84290867-84290886 | None:intergenic | 25.0% |
| !! | CCTTTAAGTTCATCTTTATT+AGG | + | chr6_4:84290864-84290883 | Msa1000930:CDS | 25.0% |
| !!! | AATTAGTGATAGTTTGTTTC+AGG | + | chr6_4:84290957-84290976 | Msa1000930:three_prime_UTR | 25.0% |
| ! | ATTTCTTGAAATGAATGTGA+AGG | + | chr6_4:84289593-84289612 | Msa1000930:exon | 25.0% |
| ! | TTTCTTGAAATGAATGTGAA+GGG | + | chr6_4:84289594-84289613 | Msa1000930:exon | 25.0% |
| ! | GATGAAATTGCATACTTTAT+AGG | - | chr6_4:84289831-84289850 | None:intergenic | 25.0% |
| ! | ATAAAAGACACCTTCATAAA+AGG | - | chr6_4:84289901-84289920 | None:intergenic | 25.0% |
| !!! | GTAGTGACATTTTTTTTGAA+GGG | - | chr6_4:84290066-84290085 | None:intergenic | 25.0% |
| !!! | AGTAGTGACATTTTTTTTGA+AGG | - | chr6_4:84290067-84290086 | None:intergenic | 25.0% |
| ! | CATACATATTTGTCAAACTT+AGG | - | chr6_4:84290125-84290144 | None:intergenic | 25.0% |
| ! | ACCAAAAACTAATCTAAACA+AGG | - | chr6_4:84290148-84290167 | None:intergenic | 25.0% |
| ! | CATAATTGAGTTTGATTCTT+CGG | - | chr6_4:84290228-84290247 | None:intergenic | 25.0% |
| ! | TGTCAAGAAAATTGTTACAT+AGG | + | chr6_4:84290413-84290432 | Msa1000930:intron | 25.0% |
| ! | GTAATTATCTAGATCTATGA+AGG | - | chr6_4:84290533-84290552 | None:intergenic | 25.0% |
| !!! | AATTAGTTTATGACTTTTGC+AGG | + | chr6_4:84290640-84290659 | Msa1000930:intron | 25.0% |
| ! | GTTTGGATAATCATAGAATA+TGG | + | chr6_4:84290799-84290818 | Msa1000930:CDS | 25.0% |
| !!! | TTTTTTGATATTGTAGCCTT+TGG | - | chr6_4:84290831-84290850 | None:intergenic | 25.0% |
| ! | ATATCAAAAAAAGCTTCAAG+AGG | + | chr6_4:84290840-84290859 | Msa1000930:CDS | 25.0% |
| ! | TATCAAAAAAAGCTTCAAGA+GGG | + | chr6_4:84290841-84290860 | Msa1000930:CDS | 25.0% |
| ! | CCTAATAAAGATGAACTTAA+AGG | - | chr6_4:84290867-84290886 | None:intergenic | 25.0% |
| !! | CCTTTAAGTTCATCTTTATT+AGG | + | chr6_4:84290864-84290883 | Msa1000930:CDS | 25.0% |
| !!! | AATTAGTGATAGTTTGTTTC+AGG | + | chr6_4:84290957-84290976 | Msa1000930:three_prime_UTR | 25.0% |
| ! | TACAACATAACGTGTTTTCA+AGG | + | chr6_4:84289538-84289557 | Msa1000930:five_prime_UTR | 30.0% |
| AATGAATGTGAAGGGAATAA+TGG | + | chr6_4:84289602-84289621 | Msa1000930:exon | 30.0% | |
| TCTTCATCATCACATTCAAA+TGG | + | chr6_4:84289768-84289787 | Msa1000930:CDS | 30.0% | |
| ! | ATAGAAGACACCTTTTATGA+AGG | + | chr6_4:84289888-84289907 | Msa1000930:intron | 30.0% |
| !! | AAAGACACCAACTTACTTTT+AGG | + | chr6_4:84289946-84289965 | Msa1000930:intron | 30.0% |
| AAAGTGAAAATCACACCTTA+AGG | + | chr6_4:84289998-84290017 | Msa1000930:intron | 30.0% | |
| !!! | GCCTTGTTTAGATTAGTTTT+TGG | + | chr6_4:84290144-84290163 | Msa1000930:intron | 30.0% |
| !! | TACTTTTTAGATGTGGTGAA+TGG | + | chr6_4:84290600-84290619 | Msa1000930:intron | 30.0% |
| ! | ACTTTTTAGATGTGGTGAAT+GGG | + | chr6_4:84290601-84290620 | Msa1000930:intron | 30.0% |
| ! | GGTTGTCAATGTTTTATCAA+GGG | + | chr6_4:84290667-84290686 | Msa1000930:CDS | 30.0% |
| ! | TTGTAGGATATGCTTTTCTT+TGG | - | chr6_4:84290744-84290763 | None:intergenic | 30.0% |
| !! | TGACTTCATTCTTTTGTTGT+AGG | - | chr6_4:84290760-84290779 | None:intergenic | 30.0% |
| ATGAAGTCATGTAGAAGTTA+TGG | + | chr6_4:84290771-84290790 | Msa1000930:CDS | 30.0% | |
| TAGAATATGGTATAGTCCAA+AGG | + | chr6_4:84290812-84290831 | Msa1000930:CDS | 30.0% | |
| TCATCTTTATTAGGCAAAAG+AGG | + | chr6_4:84290873-84290892 | Msa1000930:CDS | 30.0% | |
| CATCTTTATTAGGCAAAAGA+GGG | + | chr6_4:84290874-84290893 | Msa1000930:CDS | 30.0% | |
| TTCTTGTGTACAACAATTGA+AGG | - | chr6_4:84290921-84290940 | None:intergenic | 30.0% | |
| ! | ATGTCAGATATTAGAAGTGT+CGG | - | chr6_4:84290993-84291012 | None:intergenic | 30.0% |
| ! | TACAACATAACGTGTTTTCA+AGG | + | chr6_4:84289538-84289557 | Msa1000930:five_prime_UTR | 30.0% |
| AATGAATGTGAAGGGAATAA+TGG | + | chr6_4:84289602-84289621 | Msa1000930:exon | 30.0% | |
| TCTTCATCATCACATTCAAA+TGG | + | chr6_4:84289768-84289787 | Msa1000930:CDS | 30.0% | |
| ! | ATAGAAGACACCTTTTATGA+AGG | + | chr6_4:84289888-84289907 | Msa1000930:intron | 30.0% |
| !! | AAAGACACCAACTTACTTTT+AGG | + | chr6_4:84289946-84289965 | Msa1000930:intron | 30.0% |
| AAAGTGAAAATCACACCTTA+AGG | + | chr6_4:84289998-84290017 | Msa1000930:intron | 30.0% | |
| !!! | GCCTTGTTTAGATTAGTTTT+TGG | + | chr6_4:84290144-84290163 | Msa1000930:intron | 30.0% |
| !! | TACTTTTTAGATGTGGTGAA+TGG | + | chr6_4:84290600-84290619 | Msa1000930:intron | 30.0% |
| ! | ACTTTTTAGATGTGGTGAAT+GGG | + | chr6_4:84290601-84290620 | Msa1000930:intron | 30.0% |
| ! | GGTTGTCAATGTTTTATCAA+GGG | + | chr6_4:84290667-84290686 | Msa1000930:CDS | 30.0% |
| ! | TTGTAGGATATGCTTTTCTT+TGG | - | chr6_4:84290744-84290763 | None:intergenic | 30.0% |
| !! | TGACTTCATTCTTTTGTTGT+AGG | - | chr6_4:84290760-84290779 | None:intergenic | 30.0% |
| ATGAAGTCATGTAGAAGTTA+TGG | + | chr6_4:84290771-84290790 | Msa1000930:CDS | 30.0% | |
| TAGAATATGGTATAGTCCAA+AGG | + | chr6_4:84290812-84290831 | Msa1000930:CDS | 30.0% | |
| TCATCTTTATTAGGCAAAAG+AGG | + | chr6_4:84290873-84290892 | Msa1000930:CDS | 30.0% | |
| CATCTTTATTAGGCAAAAGA+GGG | + | chr6_4:84290874-84290893 | Msa1000930:CDS | 30.0% | |
| TTCTTGTGTACAACAATTGA+AGG | - | chr6_4:84290921-84290940 | None:intergenic | 30.0% | |
| ! | ATGTCAGATATTAGAAGTGT+CGG | - | chr6_4:84290993-84291012 | None:intergenic | 30.0% |
| ATAGTGCAAGAAACATGAAG+TGG | + | chr6_4:84289631-84289650 | Msa1000930:CDS | 35.0% | |
| AAACATGAAGTGGATGGTTA+AGG | + | chr6_4:84289641-84289660 | Msa1000930:CDS | 35.0% | |
| AGTGATTCAACAACATCCAT+TGG | + | chr6_4:84289672-84289691 | Msa1000930:CDS | 35.0% | |
| ! | ATCTTCTGAGAATGTTCCAA+TGG | - | chr6_4:84289691-84289710 | None:intergenic | 35.0% |
| TTGTTCATCAGATTTGACTG+AGG | + | chr6_4:84289731-84289750 | Msa1000930:CDS | 35.0% | |
| !! | ACACCAACTTACTTTTAGGA+AGG | + | chr6_4:84289950-84289969 | Msa1000930:intron | 35.0% |
| ACACCTTCCTAAAAGTAAGT+TGG | - | chr6_4:84289956-84289975 | None:intergenic | 35.0% | |
| ! | GTCTTTTATCAAGCACCTTA+AGG | - | chr6_4:84290016-84290035 | None:intergenic | 35.0% |
| TTGATAAAAGACACCACCAA+AGG | + | chr6_4:84290024-84290043 | Msa1000930:intron | 35.0% | |
| TGATAAAAGACACCACCAAA+GGG | + | chr6_4:84290025-84290044 | Msa1000930:intron | 35.0% | |
| ! | TTTATGACTTTTGCAGGAGA+GGG | + | chr6_4:84290646-84290665 | Msa1000930:intron | 35.0% |
| ! | GGGTTGTCAATGTTTTATCA+AGG | + | chr6_4:84290666-84290685 | Msa1000930:CDS | 35.0% |
| ! | GTCAATGTTTTATCAAGGGA+AGG | + | chr6_4:84290671-84290690 | Msa1000930:CDS | 35.0% |
| AAGTCATGTAGAAGTTATGG+AGG | + | chr6_4:84290774-84290793 | Msa1000930:CDS | 35.0% | |
| ACAACAATTGAAGGTCTAGA+AGG | - | chr6_4:84290912-84290931 | None:intergenic | 35.0% | |
| ! | CACTTGTATCGATATCGTAT+CGG | - | chr6_4:84291027-84291046 | None:intergenic | 35.0% |
| ATAGTGCAAGAAACATGAAG+TGG | + | chr6_4:84289631-84289650 | Msa1000930:CDS | 35.0% | |
| AAACATGAAGTGGATGGTTA+AGG | + | chr6_4:84289641-84289660 | Msa1000930:CDS | 35.0% | |
| AGTGATTCAACAACATCCAT+TGG | + | chr6_4:84289672-84289691 | Msa1000930:CDS | 35.0% | |
| ! | ATCTTCTGAGAATGTTCCAA+TGG | - | chr6_4:84289691-84289710 | None:intergenic | 35.0% |
| TTGTTCATCAGATTTGACTG+AGG | + | chr6_4:84289731-84289750 | Msa1000930:CDS | 35.0% | |
| !! | ACACCAACTTACTTTTAGGA+AGG | + | chr6_4:84289950-84289969 | Msa1000930:intron | 35.0% |
| ACACCTTCCTAAAAGTAAGT+TGG | - | chr6_4:84289956-84289975 | None:intergenic | 35.0% | |
| ! | GTCTTTTATCAAGCACCTTA+AGG | - | chr6_4:84290016-84290035 | None:intergenic | 35.0% |
| TTGATAAAAGACACCACCAA+AGG | + | chr6_4:84290024-84290043 | Msa1000930:intron | 35.0% | |
| TGATAAAAGACACCACCAAA+GGG | + | chr6_4:84290025-84290044 | Msa1000930:intron | 35.0% | |
| ! | TTTATGACTTTTGCAGGAGA+GGG | + | chr6_4:84290646-84290665 | Msa1000930:intron | 35.0% |
| ! | GGGTTGTCAATGTTTTATCA+AGG | + | chr6_4:84290666-84290685 | Msa1000930:CDS | 35.0% |
| ! | GTCAATGTTTTATCAAGGGA+AGG | + | chr6_4:84290671-84290690 | Msa1000930:CDS | 35.0% |
| AAGTCATGTAGAAGTTATGG+AGG | + | chr6_4:84290774-84290793 | Msa1000930:CDS | 35.0% | |
| ACAACAATTGAAGGTCTAGA+AGG | - | chr6_4:84290912-84290931 | None:intergenic | 35.0% | |
| ! | CACTTGTATCGATATCGTAT+CGG | - | chr6_4:84291027-84291046 | None:intergenic | 35.0% |
| TGCAAGAAACATGAAGTGGA+TGG | + | chr6_4:84289635-84289654 | Msa1000930:CDS | 40.0% | |
| ! | GTTTATGACTTTTGCAGGAG+AGG | + | chr6_4:84290645-84290664 | Msa1000930:intron | 40.0% |
| ATCTTTCACCTCTTTAGCAG+AGG | + | chr6_4:84290698-84290717 | Msa1000930:CDS | 40.0% | |
| ! | GTTTTGTACCTCTGCTAAAG+AGG | - | chr6_4:84290709-84290728 | None:intergenic | 40.0% |
| TCATGTAGAAGTTATGGAGG+AGG | + | chr6_4:84290777-84290796 | Msa1000930:CDS | 40.0% | |
| TAGAAGTTATGGAGGAGGTT+TGG | + | chr6_4:84290782-84290801 | Msa1000930:CDS | 40.0% | |
| TGCAAGAAACATGAAGTGGA+TGG | + | chr6_4:84289635-84289654 | Msa1000930:CDS | 40.0% | |
| ! | GTTTATGACTTTTGCAGGAG+AGG | + | chr6_4:84290645-84290664 | Msa1000930:intron | 40.0% |
| ATCTTTCACCTCTTTAGCAG+AGG | + | chr6_4:84290698-84290717 | Msa1000930:CDS | 40.0% | |
| ! | GTTTTGTACCTCTGCTAAAG+AGG | - | chr6_4:84290709-84290728 | None:intergenic | 40.0% |
| TCATGTAGAAGTTATGGAGG+AGG | + | chr6_4:84290777-84290796 | Msa1000930:CDS | 40.0% | |
| TAGAAGTTATGGAGGAGGTT+TGG | + | chr6_4:84290782-84290801 | Msa1000930:CDS | 40.0% | |
| TAAAAGACACCACCAAAGGG+TGG | + | chr6_4:84290028-84290047 | Msa1000930:intron | 45.0% | |
| TTATGTTCCAAGCCACCCTT+TGG | - | chr6_4:84290043-84290062 | None:intergenic | 45.0% | |
| TAAAAGACACCACCAAAGGG+TGG | + | chr6_4:84290028-84290047 | Msa1000930:intron | 45.0% | |
| TTATGTTCCAAGCCACCCTT+TGG | - | chr6_4:84290043-84290062 | None:intergenic | 45.0% | |
| TGTTCCAAGCCACCCTTTGG+TGG | - | chr6_4:84290040-84290059 | None:intergenic | 55.0% | |
| TGTTCCAAGCCACCCTTTGG+TGG | - | chr6_4:84290040-84290059 | None:intergenic | 55.0% | |
| GACACCACCAAAGGGTGGCT+TGG | + | chr6_4:84290033-84290052 | Msa1000930:intron | 60.0% | |
| GACACCACCAAAGGGTGGCT+TGG | + | chr6_4:84290033-84290052 | Msa1000930:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 84289470 | 84291090 | 84289470 | ID=Msa1000930;Name=Msa1000930 |
| chr6_4 | mRNA | 84289470 | 84291090 | 84289470 | ID=Msa1000930-mRNA-1;Parent=Msa1000930;Name=Msa1000930-mRNA-1;_AED=0.00;_eAED=0.00;_QI=133|1|1|1|1|1|2|143|172 |
| chr6_4 | exon | 84289470 | 84289835 | 84289470 | ID=Msa1000930-mRNA-1:exon:16415;Parent=Msa1000930-mRNA-1 |
| chr6_4 | exon | 84290662 | 84291090 | 84290662 | ID=Msa1000930-mRNA-1:exon:16416;Parent=Msa1000930-mRNA-1 |
| chr6_4 | five_prime_UTR | 84289470 | 84289602 | 84289470 | ID=Msa1000930-mRNA-1:five_prime_utr;Parent=Msa1000930-mRNA-1 |
| chr6_4 | CDS | 84289603 | 84289835 | 84289603 | ID=Msa1000930-mRNA-1:cds;Parent=Msa1000930-mRNA-1 |
| chr6_4 | CDS | 84290662 | 84290947 | 84290662 | ID=Msa1000930-mRNA-1:cds;Parent=Msa1000930-mRNA-1 |
| chr6_4 | three_prime_UTR | 84290948 | 84291090 | 84290948 | ID=Msa1000930-mRNA-1:three_prime_utr;Parent=Msa1000930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
