Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119930 | KEH42946.1 | 75.556 | 90 | 10 | 1 | 8 | 85 | 205 | 294 | 1.19e-39 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119930 | A0A072VMV8 | 75.556 | 90 | 10 | 1 | 8 | 85 | 205 | 294 | 5.70e-40 | 144 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031520 | Msa1119930 | 0.811702 | 6.134912e-51 | -8.615850e-47 |
| Msa0750650 | Msa1119930 | 0.811073 | 8.401778e-51 | -8.615850e-47 |
| Msa0804810 | Msa1119930 | 0.802158 | 6.406189e-49 | -8.615850e-47 |
| Msa0419240 | Msa1119930 | 0.819615 | 1.058453e-52 | -8.615850e-47 |
| Msa1119930 | Msa1366970 | 0.805826 | 1.106450e-49 | -8.615850e-47 |
| Msa1119930 | Msa1388160 | 0.808282 | 3.343783e-50 | -8.615850e-47 |
| Msa1119930 | Msa1458750 | 0.803554 | 3.297800e-49 | -8.615850e-47 |
| Msa0518950 | Msa1119930 | 0.804771 | 1.840413e-49 | -8.615850e-47 |
| Msa0844410 | Msa1119930 | 0.805224 | 1.480025e-49 | -8.615850e-47 |
| Msa0890300 | Msa1119930 | 0.807543 | 4.801579e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119930 | MtrunA17_Chr1g0189401 | 75.556 | 90 | 10 | 1 | 8 | 85 | 205 | 294 | 6.22e-43 | 143 |
| Msa1119930 | MtrunA17_Chr2g0276851 | 60.674 | 89 | 24 | 2 | 8 | 85 | 202 | 290 | 4.74e-30 | 109 |
| Msa1119930 | MtrunA17_Chr2g0281421 | 51.685 | 89 | 32 | 2 | 8 | 85 | 201 | 289 | 1.82e-24 | 94.4 |
| Msa1119930 | MtrunA17_Chr4g0047961 | 50.000 | 90 | 34 | 2 | 7 | 85 | 180 | 269 | 2.17e-24 | 94.0 |
| Msa1119930 | MtrunA17_Chr8g0381611 | 47.778 | 90 | 30 | 2 | 8 | 85 | 212 | 296 | 2.08e-18 | 77.8 |
| Msa1119930 | MtrunA17_Chr7g0227041 | 47.727 | 88 | 34 | 3 | 8 | 85 | 227 | 312 | 3.35e-18 | 77.0 |
| Msa1119930 | MtrunA17_Chr3g0095271 | 57.576 | 66 | 17 | 2 | 20 | 85 | 7 | 61 | 6.80e-17 | 67.8 |
| Msa1119930 | MtrunA17_Chr3g0123571 | 45.349 | 86 | 38 | 2 | 8 | 85 | 221 | 305 | 1.08e-16 | 72.8 |
| Msa1119930 | MtrunA17_Chr8g0381601 | 43.023 | 86 | 40 | 2 | 8 | 85 | 220 | 304 | 8.24e-16 | 70.5 |
| Msa1119930 | MtrunA17_Chr2g0326801 | 38.462 | 91 | 37 | 3 | 8 | 85 | 217 | 301 | 8.74e-14 | 64.7 |
| Msa1119930 | MtrunA17_Chr4g0028891 | 40.698 | 86 | 42 | 3 | 8 | 85 | 241 | 325 | 1.22e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119930 | AT4G18530.2 | 62.500 | 88 | 22 | 2 | 9 | 85 | 198 | 285 | 4.83e-30 | 108 |
| Msa1119930 | AT4G18530.3 | 63.218 | 87 | 21 | 2 | 10 | 85 | 194 | 280 | 9.43e-30 | 108 |
| Msa1119930 | AT4G18530.1 | 63.218 | 87 | 21 | 2 | 10 | 85 | 199 | 285 | 1.06e-29 | 108 |
| Msa1119930 | AT4G12840.3 | 57.303 | 89 | 27 | 1 | 8 | 85 | 104 | 192 | 5.40e-29 | 105 |
| Msa1119930 | AT4G12840.1 | 57.303 | 89 | 27 | 1 | 8 | 85 | 198 | 286 | 9.20e-29 | 106 |
| Msa1119930 | AT4G12840.2 | 57.303 | 89 | 27 | 1 | 8 | 85 | 198 | 286 | 9.20e-29 | 106 |
| Msa1119930 | AT1G61240.7 | 51.111 | 90 | 33 | 2 | 7 | 85 | 202 | 291 | 3.68e-24 | 93.6 |
| Msa1119930 | AT1G61240.8 | 51.685 | 89 | 32 | 2 | 8 | 85 | 136 | 224 | 4.34e-24 | 93.2 |
| Msa1119930 | AT1G61240.4 | 51.685 | 89 | 32 | 2 | 8 | 85 | 203 | 291 | 4.46e-24 | 94.0 |
| Msa1119930 | AT1G61240.5 | 51.685 | 89 | 32 | 2 | 8 | 85 | 203 | 291 | 4.46e-24 | 94.0 |
| Msa1119930 | AT1G61240.6 | 51.685 | 89 | 32 | 2 | 8 | 85 | 203 | 291 | 4.46e-24 | 94.0 |
| Msa1119930 | AT1G61240.2 | 51.685 | 89 | 32 | 2 | 8 | 85 | 203 | 291 | 4.46e-24 | 94.0 |
| Msa1119930 | AT1G61240.1 | 51.685 | 89 | 32 | 2 | 8 | 85 | 203 | 291 | 4.46e-24 | 94.0 |
| Msa1119930 | AT1G61240.3 | 51.685 | 89 | 32 | 2 | 8 | 85 | 203 | 291 | 4.46e-24 | 94.0 |
| Msa1119930 | AT1G11170.4 | 51.111 | 90 | 33 | 1 | 7 | 85 | 205 | 294 | 5.53e-24 | 92.8 |
| Msa1119930 | AT1G11170.8 | 51.111 | 90 | 33 | 1 | 7 | 85 | 205 | 294 | 5.53e-24 | 92.8 |
| Msa1119930 | AT1G11170.2 | 51.111 | 90 | 33 | 1 | 7 | 85 | 205 | 294 | 7.09e-24 | 92.4 |
| Msa1119930 | AT1G11170.3 | 51.685 | 89 | 32 | 1 | 8 | 85 | 206 | 294 | 8.41e-24 | 92.8 |
| Msa1119930 | AT1G11170.1 | 51.685 | 89 | 32 | 1 | 8 | 85 | 206 | 294 | 2.70e-23 | 91.7 |
| Msa1119930 | AT1G11170.6 | 51.685 | 89 | 32 | 1 | 8 | 85 | 206 | 294 | 2.70e-23 | 91.7 |
| Msa1119930 | AT1G11170.5 | 51.685 | 89 | 32 | 1 | 8 | 85 | 206 | 294 | 2.70e-23 | 91.7 |
| Msa1119930 | AT1G11170.7 | 51.685 | 89 | 32 | 1 | 8 | 85 | 206 | 294 | 2.70e-23 | 91.7 |
| Msa1119930 | AT3G26440.4 | 45.349 | 86 | 38 | 2 | 8 | 85 | 195 | 279 | 2.29e-17 | 75.1 |
| Msa1119930 | AT3G26440.5 | 45.349 | 86 | 38 | 2 | 8 | 85 | 242 | 326 | 2.39e-17 | 75.1 |
| Msa1119930 | AT3G26440.6 | 45.349 | 86 | 38 | 2 | 8 | 85 | 242 | 326 | 2.46e-17 | 75.1 |
| Msa1119930 | AT3G26440.1 | 45.349 | 86 | 38 | 2 | 8 | 85 | 219 | 303 | 2.54e-17 | 75.1 |
| Msa1119930 | AT3G26440.2 | 45.349 | 86 | 38 | 2 | 8 | 85 | 219 | 303 | 2.54e-17 | 75.1 |
| Msa1119930 | AT3G26440.3 | 45.349 | 86 | 38 | 2 | 8 | 85 | 219 | 303 | 2.87e-17 | 74.7 |
| Msa1119930 | AT1G24570.1 | 48.837 | 86 | 35 | 3 | 8 | 85 | 201 | 285 | 6.49e-17 | 73.9 |
| Msa1119930 | AT1G24570.2 | 48.837 | 86 | 35 | 3 | 8 | 85 | 208 | 292 | 7.47e-17 | 73.6 |
| Msa1119930 | AT1G13000.3 | 46.512 | 86 | 37 | 3 | 8 | 85 | 228 | 312 | 9.16e-17 | 73.2 |
| Msa1119930 | AT1G13000.2 | 46.512 | 86 | 37 | 3 | 8 | 85 | 228 | 312 | 9.52e-17 | 73.6 |
| Msa1119930 | AT1G13000.5 | 46.512 | 86 | 37 | 3 | 8 | 85 | 228 | 312 | 9.52e-17 | 73.6 |
| Msa1119930 | AT1G13000.4 | 46.512 | 86 | 37 | 3 | 8 | 85 | 228 | 312 | 9.52e-17 | 73.6 |
| Msa1119930 | AT1G13000.1 | 46.512 | 86 | 37 | 3 | 8 | 85 | 228 | 312 | 9.52e-17 | 73.6 |
| Msa1119930 | AT3G27470.2 | 46.154 | 91 | 32 | 3 | 7 | 85 | 219 | 304 | 1.26e-16 | 73.2 |
| Msa1119930 | AT3G27470.1 | 46.154 | 91 | 32 | 3 | 7 | 85 | 219 | 304 | 1.26e-16 | 73.2 |
| Msa1119930 | AT3G27470.4 | 46.154 | 91 | 32 | 3 | 7 | 85 | 219 | 304 | 1.26e-16 | 73.2 |
| Msa1119930 | AT3G27470.3 | 46.154 | 91 | 32 | 3 | 7 | 85 | 219 | 304 | 1.26e-16 | 73.2 |
| Msa1119930 | AT3G27470.5 | 46.154 | 91 | 32 | 3 | 7 | 85 | 219 | 304 | 1.51e-16 | 72.8 |
| Msa1119930 | AT2G28310.2 | 42.529 | 87 | 41 | 2 | 7 | 85 | 203 | 288 | 5.54e-16 | 71.2 |
| Msa1119930 | AT2G28310.1 | 42.529 | 87 | 41 | 2 | 7 | 85 | 203 | 288 | 5.54e-16 | 71.2 |
| Msa1119930 | AT2G28310.3 | 42.529 | 87 | 41 | 2 | 7 | 85 | 203 | 288 | 5.54e-16 | 71.2 |
| Msa1119930 | AT1G08040.3 | 43.023 | 86 | 40 | 2 | 8 | 85 | 207 | 291 | 8.34e-16 | 70.9 |
| Msa1119930 | AT1G08040.2 | 43.023 | 86 | 40 | 2 | 8 | 85 | 211 | 295 | 8.85e-16 | 70.5 |
| Msa1119930 | AT1G08040.4 | 43.023 | 86 | 40 | 2 | 8 | 85 | 211 | 295 | 8.85e-16 | 70.5 |
| Msa1119930 | AT1G08040.1 | 43.023 | 86 | 40 | 2 | 8 | 85 | 211 | 295 | 8.85e-16 | 70.5 |
| Msa1119930 | AT1G67850.4 | 44.186 | 86 | 39 | 2 | 8 | 85 | 208 | 292 | 1.39e-15 | 70.1 |
| Msa1119930 | AT1G67850.6 | 44.186 | 86 | 39 | 2 | 8 | 85 | 224 | 308 | 1.53e-15 | 70.1 |
| Msa1119930 | AT1G67850.7 | 44.186 | 86 | 39 | 2 | 8 | 85 | 224 | 308 | 1.53e-15 | 70.1 |
| Msa1119930 | AT1G67850.1 | 44.186 | 86 | 39 | 2 | 8 | 85 | 224 | 308 | 1.53e-15 | 70.1 |
| Msa1119930 | AT1G67850.3 | 44.186 | 86 | 39 | 2 | 8 | 85 | 224 | 308 | 1.53e-15 | 70.1 |
| Msa1119930 | AT1G67850.2 | 44.186 | 86 | 39 | 2 | 8 | 85 | 224 | 308 | 1.53e-15 | 70.1 |
| Msa1119930 | AT1G67850.5 | 44.186 | 86 | 39 | 2 | 8 | 85 | 224 | 308 | 1.53e-15 | 70.1 |
| Msa1119930 | AT1G11170.9 | 60.000 | 40 | 16 | 0 | 7 | 46 | 205 | 244 | 7.10e-11 | 56.6 |
Find 110 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAATACGTGAACAATTT+TGG | 0.102797 | 7_3:+69081850 | None:intergenic |
| AAGCCACACAATCAAATTTA+AGG | 0.166304 | 7_3:+69081089 | None:intergenic |
| CCGATTCAATCTTCTTCTTT+TGG | 0.173164 | 7_3:-69081946 | Msa1119930:five_prime_UTR |
| AGTGTAGGGGTTGGTGGTGT+TGG | 0.223493 | 7_3:-69081586 | Msa1119930:five_prime_UTR |
| TTGTGTTTGGTACATGATTT+AGG | 0.268098 | 7_3:-69079332 | Msa1119930:exon |
| CACACTGCACAACATCTAAT+TGG | 0.269279 | 7_3:-69079050 | Msa1119930:three_prime_UTR |
| GAATCGGTGAAAAGGGTTAT+AGG | 0.287655 | 7_3:+69081962 | None:intergenic |
| TTAGGGGAAATTTCTTCTTC+TGG | 0.313195 | 7_3:-69081335 | Msa1119930:intron |
| CTATCAAGAACTCATCTTTA+CGG | 0.317721 | 7_3:+69079141 | None:intergenic |
| AATCGGTGAAAAGGGTTATA+GGG | 0.324032 | 7_3:+69081963 | None:intergenic |
| GTTGATAGTGGCGGGAGGTT+AGG | 0.330777 | 7_3:+69081808 | None:intergenic |
| TAAATTTGATTGTGTGGCTT+TGG | 0.342541 | 7_3:-69081086 | Msa1119930:five_prime_UTR |
| TATGAGTTCGATGGCGCGTT+TGG | 0.346191 | 7_3:-69081628 | Msa1119930:five_prime_UTR |
| TTCTTCAGTGCGGGCATAAC+GGG | 0.346919 | 7_3:-69081723 | Msa1119930:five_prime_UTR |
| GTGTAGGGGTTGGTGGTGTT+GGG | 0.356159 | 7_3:-69081585 | Msa1119930:five_prime_UTR |
| TTGATAGTGGCGGGAGGTTA+GGG | 0.358471 | 7_3:+69081809 | None:intergenic |
| ACATTTAAAGCTCTTATTGA+TGG | 0.370905 | 7_3:-69079530 | Msa1119930:intron |
| GTGAAGAAAGAGTGTGGTTC+CGG | 0.374306 | 7_3:-69081472 | Msa1119930:five_prime_UTR |
| CGTGCATGGAGAGGTTGTTT+TGG | 0.378938 | 7_3:-69081494 | Msa1119930:five_prime_UTR |
| CTGCTGGTGGGGTAGATAAC+AGG | 0.384652 | 7_3:-69081013 | Msa1119930:five_prime_UTR |
| AGGCAGTGGGATGGGTGCTT+TGG | 0.389109 | 7_3:+69082009 | None:intergenic |
| GTCTCAAACTCTGCAATGTT+TGG | 0.399135 | 7_3:+69081036 | None:intergenic |
| AGGTACTTAAAATGATGATT+TGG | 0.405530 | 7_3:-69080961 | Msa1119930:five_prime_UTR |
| AGAAGATTGAATCGGTGAAA+AGG | 0.411295 | 7_3:+69081954 | None:intergenic |
| AAATCCAATACATACTTCTC+AGG | 0.417012 | 7_3:+69079836 | None:intergenic |
| GGTTAGGGTAGCGGAGAAGA+AGG | 0.426538 | 7_3:+69081824 | None:intergenic |
| TGGTTGCGGCGGCGTCGGCA+TGG | 0.427596 | 7_3:+69081653 | None:intergenic |
| AAGCTGCGTGGCGTTGTGTT+TGG | 0.428798 | 7_3:-69079345 | Msa1119930:CDS |
| TTTCAGGTGGGTAGAAATGA+TGG | 0.436547 | 7_3:-69079383 | Msa1119930:intron |
| AAAGCTCTTATTGATGGTAA+AGG | 0.436960 | 7_3:-69079524 | Msa1119930:intron |
| GAAGATTGAATCGGTGAAAA+GGG | 0.439166 | 7_3:+69081955 | None:intergenic |
| GGGCATAACGGGAGAGATAT+TGG | 0.439238 | 7_3:-69081712 | Msa1119930:five_prime_UTR |
| TGGTGGTGTTGGGTGGAGTG+TGG | 0.441401 | 7_3:-69081575 | Msa1119930:five_prime_UTR |
| GAGATGCAAATCAACTCTAA+TGG | 0.447911 | 7_3:+69079174 | None:intergenic |
| CGATGAATTTGACGAGGACG+AGG | 0.449213 | 7_3:-69081542 | Msa1119930:five_prime_UTR |
| TGCACGTCGGAACCTCCGTC+TGG | 0.449742 | 7_3:+69081511 | None:intergenic |
| GGCATGGGTCTCTACCTTCT+CGG | 0.451865 | 7_3:+69081669 | None:intergenic |
| GTTCGATGGCGCGTTTGGAT+TGG | 0.453272 | 7_3:-69081623 | Msa1119930:five_prime_UTR |
| TGCAAAATATGTTCTAAGAT+AGG | 0.460047 | 7_3:-69080981 | Msa1119930:five_prime_UTR |
| GGTTGCGGCGGCGTCGGCAT+GGG | 0.467786 | 7_3:+69081654 | None:intergenic |
| TATGTTTCTATTGTCAAAGA+AGG | 0.469804 | 7_3:-69079706 | Msa1119930:CDS |
| CCTCGCTGTTGTCTCAGAAC+AGG | 0.474821 | 7_3:-69081765 | Msa1119930:five_prime_UTR |
| AAGTTGACGAGGTGAGTGTA+GGG | 0.479563 | 7_3:-69081600 | Msa1119930:five_prime_UTR |
| TTGAGATTCTTCTTCAGTGC+GGG | 0.479666 | 7_3:-69081732 | Msa1119930:five_prime_UTR |
| CTTCTTCAGTGCGGGCATAA+CGG | 0.480238 | 7_3:-69081724 | Msa1119930:five_prime_UTR |
| AAAGAGTGTGGTTCCGGCAC+GGG | 0.483171 | 7_3:-69081466 | Msa1119930:five_prime_UTR |
| GAGGTGAGTGTAGGGGTTGG+TGG | 0.493016 | 7_3:-69081592 | Msa1119930:five_prime_UTR |
| TAGGGGTTGGTGGTGTTGGG+TGG | 0.497468 | 7_3:-69081582 | Msa1119930:five_prime_UTR |
| ATATGTGGTTGCGGCGGCGT+CGG | 0.499339 | 7_3:+69081648 | None:intergenic |
| GGTTGACAGCGGCGGAAGAA+AGG | 0.505734 | 7_3:+69081786 | None:intergenic |
| ATGTTGTCTGAAAGATGAAA+AGG | 0.505810 | 7_3:-69081412 | Msa1119930:five_prime_UTR |
| CCAAAAGAAGAAGATTGAAT+CGG | 0.513881 | 7_3:+69081946 | None:intergenic |
| GACGAGGGAGCAAGGCCAGA+CGG | 0.520038 | 7_3:-69081526 | Msa1119930:five_prime_UTR |
| GAAGTTGACGAGGTGAGTGT+AGG | 0.527716 | 7_3:-69081601 | Msa1119930:five_prime_UTR |
| GAAATTGAGAACTGAGGCAG+TGG | 0.528037 | 7_3:+69081995 | None:intergenic |
| CTGTTATCTACCCCACCAGC+AGG | 0.532423 | 7_3:+69081014 | None:intergenic |
| ATCGAACTCATATGTGGTTG+CGG | 0.533746 | 7_3:+69081639 | None:intergenic |
| CGCGCCATCGAACTCATATG+TGG | 0.533907 | 7_3:+69081633 | None:intergenic |
| GTGGCGGGAGGTTAGGGTAG+CGG | 0.544312 | 7_3:+69081815 | None:intergenic |
| TTGACGAGGACGAGGGAGCA+AGG | 0.548701 | 7_3:-69081534 | Msa1119930:five_prime_UTR |
| GTTTCTATTGTCAAAGAAGG+AGG | 0.548971 | 7_3:-69079703 | Msa1119930:CDS |
| GGCGGAAGAAAGGTTGATAG+TGG | 0.555602 | 7_3:+69081796 | None:intergenic |
| TTTCTATTGTCAAAGAAGGA+GGG | 0.557757 | 7_3:-69079702 | Msa1119930:CDS |
| GAAGAAAGGTTGATAGTGGC+GGG | 0.557867 | 7_3:+69081800 | None:intergenic |
| GTAGCGGAGAAGAAGGTGAA+AGG | 0.558484 | 7_3:+69081831 | None:intergenic |
| TCGTCAAATTCATCGACCAC+TGG | 0.562554 | 7_3:+69081550 | None:intergenic |
| AAACATCTCAAGAGTTAGAG+AGG | 0.565399 | 7_3:+69081887 | None:intergenic |
| AAGCCTTAAATTTGATTGTG+TGG | 0.565508 | 7_3:-69081092 | Msa1119930:five_prime_UTR |
| TTACTTATTTACCAGGTGCA+AGG | 0.569366 | 7_3:+69079476 | None:intergenic |
| ACTTAAAATGATGATTTGGA+AGG | 0.569690 | 7_3:-69080957 | Msa1119930:intron |
| GACGGAGGTTCCGACGTGCA+TGG | 0.572776 | 7_3:-69081508 | Msa1119930:five_prime_UTR |
| GCACCGCTCCACCTTGCACC+TGG | 0.573507 | 7_3:-69079487 | Msa1119930:intron |
| CATTATCAAATTACCGCACG+TGG | 0.576103 | 7_3:-69079634 | Msa1119930:intron |
| TTGCAGAGTTTGAGACCTGC+TGG | 0.577711 | 7_3:-69081029 | Msa1119930:five_prime_UTR |
| GAGAACTGAGGCAGTGGGAT+GGG | 0.581182 | 7_3:+69082001 | None:intergenic |
| GAAAGAGTGTGGTTCCGGCA+CGG | 0.583374 | 7_3:-69081467 | Msa1119930:five_prime_UTR |
| GACGAGGTGAGTGTAGGGGT+TGG | 0.595580 | 7_3:-69081595 | Msa1119930:five_prime_UTR |
| TTCACATTGATCAAACAAAG+TGG | 0.597146 | 7_3:+69079305 | None:intergenic |
| AGAGTTTGAGACCTGCTGGT+GGG | 0.597298 | 7_3:-69081025 | Msa1119930:five_prime_UTR |
| AACATCTCAAGAGTTAGAGA+GGG | 0.605065 | 7_3:+69081888 | None:intergenic |
| GATGATCGAACTTCCCGTGC+CGG | 0.605543 | 7_3:+69081453 | None:intergenic |
| GGCACGGGAAGTTCGATCAT+CGG | 0.606010 | 7_3:-69081451 | Msa1119930:five_prime_UTR |
| AATCCAATACATACTTCTCA+GGG | 0.606364 | 7_3:+69079837 | None:intergenic |
| GGAAGAAAGGTTGATAGTGG+CGG | 0.608209 | 7_3:+69081799 | None:intergenic |
| GCAACCACATATGAGTTCGA+TGG | 0.612657 | 7_3:-69081637 | Msa1119930:five_prime_UTR |
| CAGAGTTTGAGACCTGCTGG+TGG | 0.613677 | 7_3:-69081026 | Msa1119930:five_prime_UTR |
| CTTATTTACCAGGTGCAAGG+TGG | 0.618836 | 7_3:+69079479 | None:intergenic |
| TTACCAGGTGCAAGGTGGAG+CGG | 0.619211 | 7_3:+69079484 | None:intergenic |
| GTTTGGATTGGAAGTTGACG+AGG | 0.632339 | 7_3:-69081611 | Msa1119930:five_prime_UTR |
| TTAGATGTTGTGCAGTGTGA+AGG | 0.636439 | 7_3:+69079054 | None:intergenic |
| AACAGCGAGGTTGACAGCGG+CGG | 0.638375 | 7_3:+69081778 | None:intergenic |
| GAGTTTGAGACCTGCTGGTG+GGG | 0.639365 | 7_3:-69081024 | Msa1119930:five_prime_UTR |
| TGAGAACTGAGGCAGTGGGA+TGG | 0.646415 | 7_3:+69082000 | None:intergenic |
| TTTGAGATTCTTCTTCAGTG+CGG | 0.648063 | 7_3:-69081733 | Msa1119930:five_prime_UTR |
| AGGTTCCGACGTGCATGGAG+AGG | 0.657410 | 7_3:-69081503 | Msa1119930:five_prime_UTR |
| GATGAATTTGACGAGGACGA+GGG | 0.657619 | 7_3:-69081541 | Msa1119930:five_prime_UTR |
| TTATGTCGATGAGTCCGAGA+AGG | 0.666239 | 7_3:-69081683 | Msa1119930:five_prime_UTR |
| GAAAGGTTGATAGTGGCGGG+AGG | 0.669945 | 7_3:+69081803 | None:intergenic |
| CCAATACATACTTCTCAGGG+TGG | 0.673618 | 7_3:+69079840 | None:intergenic |
| GAGAGTGAAATTGAGAACTG+AGG | 0.678269 | 7_3:+69081989 | None:intergenic |
| AGTTGACGAGGTGAGTGTAG+GGG | 0.679105 | 7_3:-69081599 | Msa1119930:five_prime_UTR |
| TGGGTGGAGTGTGGATCCAG+TGG | 0.680706 | 7_3:-69081566 | Msa1119930:five_prime_UTR |
| GAACTCATATGTGGTTGCGG+CGG | 0.683062 | 7_3:+69081642 | None:intergenic |
| GACAACAGCGAGGTTGACAG+CGG | 0.690240 | 7_3:+69081775 | None:intergenic |
| GAGGGAGCAAGGCCAGACGG+AGG | 0.699474 | 7_3:-69081523 | Msa1119930:five_prime_UTR |
| AACAACCTCTCCATGCACGT+CGG | 0.705687 | 7_3:+69081498 | None:intergenic |
| TAACGGGAGAGATATTGGTG+AGG | 0.731086 | 7_3:-69081707 | Msa1119930:five_prime_UTR |
| AGTGGTCGATGAATTTGACG+AGG | 0.738185 | 7_3:-69081548 | Msa1119930:five_prime_UTR |
| AAATTGAGAACTGAGGCAGT+GGG | 0.745060 | 7_3:+69081996 | None:intergenic |
| CCTGTTCTGAGACAACAGCG+AGG | 0.823053 | 7_3:+69081765 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTATAAGAATAAAAATTAT+AGG | + | chr7_3:69080273-69080292 | None:intergenic | 10.0% |
| !! | AACATTAGTATTAATAATAA+AGG | + | chr7_3:69080594-69080613 | None:intergenic | 10.0% |
| !! | TTATGAGTTTAGATAAAAAA+TGG | - | chr7_3:69080495-69080514 | Msa1119930:intron | 15.0% |
| !! | AATCAAAGAGAAAATAATAT+AGG | + | chr7_3:69080798-69080817 | None:intergenic | 15.0% |
| !!! | TTAATTTTCCAAAATCATTA+AGG | - | chr7_3:69081258-69081277 | Msa1119930:intron | 15.0% |
| !!! | TTTTTCCTTTATGATTTTAA+AGG | - | chr7_3:69081295-69081314 | Msa1119930:intron | 15.0% |
| !!! | AACTTTTGATAATTGCTTTT+AGG | - | chr7_3:69079671-69079690 | Msa1119930:CDS | 20.0% |
| !!! | ACTTTTGATAATTGCTTTTA+GGG | - | chr7_3:69079672-69079691 | Msa1119930:CDS | 20.0% |
| !! | GATAGAAAATTAGATAAGAA+AGG | + | chr7_3:69079744-69079763 | None:intergenic | 20.0% |
| !! | ATCGTAGAAAATATAATAGT+TGG | - | chr7_3:69079761-69079780 | Msa1119930:intron | 20.0% |
| !! | ATGAATAAAACATTAGTGAA+AGG | + | chr7_3:69080317-69080336 | None:intergenic | 20.0% |
| !! | ATTACTAATCACTACTAAAA+TGG | - | chr7_3:69080455-69080474 | Msa1119930:intron | 20.0% |
| !! | ATTCATTTCTAAACTCTAAA+AGG | + | chr7_3:69080524-69080543 | None:intergenic | 20.0% |
| !! | CATTTATTAAGACAACAATA+AGG | - | chr7_3:69080708-69080727 | Msa1119930:intron | 20.0% |
| !! | AAGAATAAAAAGAAAAAGAG+GGG | + | chr7_3:69080742-69080761 | None:intergenic | 20.0% |
| !! | CAAGAATAAAAAGAAAAAGA+GGG | + | chr7_3:69080743-69080762 | None:intergenic | 20.0% |
| !!! | ACATACCTTTAAAATCATAA+AGG | + | chr7_3:69081303-69081322 | None:intergenic | 20.0% |
| !! | AATGTTAATGTTACTATTTG+AGG | - | chr7_3:69081471-69081490 | Msa1119930:five_prime_UTR | 20.0% |
| !!! | CTTTTGATAATTGCTTTTAG+GGG | - | chr7_3:69079673-69079692 | Msa1119930:CDS | 25.0% |
| !!! | TGCAAAATATGTTCTAAGAT+AGG | - | chr7_3:69080043-69080062 | Msa1119930:intron | 25.0% |
| ! | AGGTACTTAAAATGATGATT+TGG | - | chr7_3:69080063-69080082 | Msa1119930:intron | 25.0% |
| !! | ACTTAAAATGATGATTTGGA+AGG | - | chr7_3:69080067-69080086 | Msa1119930:intron | 25.0% |
| !!! | ATCCATTTGTTTTGTCAATT+TGG | - | chr7_3:69080622-69080641 | Msa1119930:intron | 25.0% |
| ! | CCAAGAATAAAAAGAAAAAG+AGG | + | chr7_3:69080744-69080763 | None:intergenic | 25.0% |
| !! | CCTCTTTTTCTTTTTATTCT+TGG | - | chr7_3:69080741-69080760 | Msa1119930:intron | 25.0% |
| !! | CTTTTTATTCTTGGAATGAT+TGG | - | chr7_3:69080750-69080769 | Msa1119930:intron | 25.0% |
| !!! | ATTTGATAATGTCCCAATTA+AGG | - | chr7_3:69080989-69081008 | Msa1119930:five_prime_UTR | 25.0% |
| ! | CACATCTAATTACCTTAATT+GGG | + | chr7_3:69081004-69081023 | None:intergenic | 25.0% |
| ! | ACACATCTAATTACCTTAAT+TGG | + | chr7_3:69081005-69081024 | None:intergenic | 25.0% |
| ! | AGAAGTTATAGTAATGCATA+AGG | + | chr7_3:69081030-69081049 | None:intergenic | 25.0% |
| ! | TATGCATTACTATAACTTCT+TGG | - | chr7_3:69081030-69081049 | Msa1119930:five_prime_UTR | 25.0% |
| !!! | CATAGAAAGTTTAGTTCTAT+TGG | - | chr7_3:69081232-69081251 | Msa1119930:intron | 25.0% |
| !! | CAACTAATCCTTAATGATTT+TGG | + | chr7_3:69081269-69081288 | None:intergenic | 25.0% |
| !! | TATGTTTCTATTGTCAAAGA+AGG | - | chr7_3:69081318-69081337 | Msa1119930:intron | 25.0% |
| ! | CAAATACAGAAATGCAATTA+TGG | + | chr7_3:69081442-69081461 | None:intergenic | 25.0% |
| !! | ACATTTAAAGCTCTTATTGA+TGG | - | chr7_3:69081494-69081513 | Msa1119930:five_prime_UTR | 25.0% |
| ! | CCAAAAATTACTTATTTACC+AGG | + | chr7_3:69081558-69081577 | None:intergenic | 25.0% |
| !! | CCTGGTAAATAAGTAATTTT+TGG | - | chr7_3:69081555-69081574 | Msa1119930:five_prime_UTR | 25.0% |
| ! | CTTCAACTGCATAAAATAAA+GGG | + | chr7_3:69081604-69081623 | None:intergenic | 25.0% |
| ! | TCTTCAACTGCATAAAATAA+AGG | + | chr7_3:69081605-69081624 | None:intergenic | 25.0% |
| !!! | AGTATGAACTAATTTGTTTC+AGG | - | chr7_3:69081625-69081644 | Msa1119930:five_prime_UTR | 25.0% |
| CCAAAAGAAGAAGATTGAAT+CGG | + | chr7_3:69079081-69079100 | None:intergenic | 30.0% | |
| ! | AGGAATACGTGAACAATTTT+GGG | + | chr7_3:69079176-69079195 | None:intergenic | 30.0% |
| ! | AAGGAATACGTGAACAATTT+TGG | + | chr7_3:69079177-69079196 | None:intergenic | 30.0% |
| ATGTTGTCTGAAAGATGAAA+AGG | - | chr7_3:69079612-69079631 | Msa1119930:intron | 30.0% | |
| GATAAGAAAGGAACAAATAG+AGG | + | chr7_3:69079732-69079751 | None:intergenic | 30.0% | |
| ! | TGAGTTTTCCATTAGATTGT+TGG | - | chr7_3:69079816-69079835 | Msa1119930:intron | 30.0% |
| AAGCCTTAAATTTGATTGTG+TGG | - | chr7_3:69079932-69079951 | Msa1119930:intron | 30.0% | |
| AAGCCACACAATCAAATTTA+AGG | + | chr7_3:69079938-69079957 | None:intergenic | 30.0% | |
| TAAATTTGATTGTGTGGCTT+TGG | - | chr7_3:69079938-69079957 | Msa1119930:intron | 30.0% | |
| ! | CTTTGGATATACACTTTTGT+TGG | - | chr7_3:69079955-69079974 | Msa1119930:intron | 30.0% |
| GGAAAGCAATAAAACATTCA+TGG | + | chr7_3:69080296-69080315 | None:intergenic | 30.0% | |
| ! | CATGTGTTTGAAACTTAGAT+CGG | + | chr7_3:69080551-69080570 | None:intergenic | 30.0% |
| CACCAAATTGACAAAACAAA+TGG | + | chr7_3:69080627-69080646 | None:intergenic | 30.0% | |
| TGTAAAAGTAATTGCCTATG+AGG | - | chr7_3:69080657-69080676 | Msa1119930:intron | 30.0% | |
| TACTATCATAGAGAGACTAT+TGG | + | chr7_3:69080849-69080868 | None:intergenic | 30.0% | |
| TAGAATACCTTATGTTCCAA+TGG | - | chr7_3:69081077-69081096 | Msa1119930:five_prime_UTR | 30.0% | |
| AATCCAATACATACTTCTCA+GGG | + | chr7_3:69081190-69081209 | None:intergenic | 30.0% | |
| AAATCCAATACATACTTCTC+AGG | + | chr7_3:69081191-69081210 | None:intergenic | 30.0% | |
| TTTCTATTGTCAAAGAAGGA+GGG | - | chr7_3:69081322-69081341 | Msa1119930:intron | 30.0% | |
| ! | TAATGAACTTCCGACTTTTT+AGG | + | chr7_3:69081375-69081394 | None:intergenic | 30.0% |
| ! | AAAGCTCTTATTGATGGTAA+AGG | - | chr7_3:69081500-69081519 | Msa1119930:five_prime_UTR | 30.0% |
| !! | ATGAACTAATTTGTTTCAGG+TGG | - | chr7_3:69081628-69081647 | Msa1119930:five_prime_UTR | 30.0% |
| !! | TGAACTAATTTGTTTCAGGT+GGG | - | chr7_3:69081629-69081648 | Msa1119930:five_prime_UTR | 30.0% |
| TTGTGTTTGGTACATGATTT+AGG | - | chr7_3:69081692-69081711 | Msa1119930:five_prime_UTR | 30.0% | |
| TTCACATTGATCAAACAAAG+TGG | + | chr7_3:69081722-69081741 | None:intergenic | 30.0% | |
| CTATCAAGAACTCATCTTTA+CGG | + | chr7_3:69081886-69081905 | None:intergenic | 30.0% | |
| AATCGGTGAAAAGGGTTATA+GGG | + | chr7_3:69079064-69079083 | None:intergenic | 35.0% | |
| GAAGATTGAATCGGTGAAAA+GGG | + | chr7_3:69079072-69079091 | None:intergenic | 35.0% | |
| AGAAGATTGAATCGGTGAAA+AGG | + | chr7_3:69079073-69079092 | None:intergenic | 35.0% | |
| ! | CCGATTCAATCTTCTTCTTT+TGG | - | chr7_3:69079078-69079097 | Msa1119930:three_prime_UTR | 35.0% |
| AACATCTCAAGAGTTAGAGA+GGG | + | chr7_3:69079139-69079158 | None:intergenic | 35.0% | |
| AAACATCTCAAGAGTTAGAG+AGG | + | chr7_3:69079140-69079159 | None:intergenic | 35.0% | |
| ! | TTTGAGATTCTTCTTCAGTG+CGG | - | chr7_3:69079291-69079310 | Msa1119930:three_prime_UTR | 35.0% |
| TTAGGGGAAATTTCTTCTTC+TGG | - | chr7_3:69079689-69079708 | Msa1119930:CDS | 35.0% | |
| AAGAAAGGAACAAATAGAGG+TGG | + | chr7_3:69079729-69079748 | None:intergenic | 35.0% | |
| TGTATCAGCCAACAATCTAA+TGG | + | chr7_3:69079827-69079846 | None:intergenic | 35.0% | |
| AGTGCAAATGAGAGAATGAA+TGG | + | chr7_3:69080341-69080360 | None:intergenic | 35.0% | |
| TCTTTGCCAATAACTTTCAG+AGG | - | chr7_3:69080410-69080429 | Msa1119930:intron | 35.0% | |
| CGATCTAAGTTTCAAACACA+TGG | - | chr7_3:69080549-69080568 | Msa1119930:intron | 35.0% | |
| CAATGAGAGTGATTAAGAAG+AGG | + | chr7_3:69080944-69080963 | None:intergenic | 35.0% | |
| CTATAACTTCTTGGCATGAT+TGG | - | chr7_3:69081039-69081058 | Msa1119930:five_prime_UTR | 35.0% | |
| GATGACTCAACAAAAACTGA+CGG | - | chr7_3:69081121-69081140 | Msa1119930:intron | 35.0% | |
| GTTTCTATTGTCAAAGAAGG+AGG | - | chr7_3:69081321-69081340 | Msa1119930:intron | 35.0% | |
| AGCACTTGATCCTAAAAAGT+CGG | - | chr7_3:69081362-69081381 | Msa1119930:five_prime_UTR | 35.0% | |
| TTACTTATTTACCAGGTGCA+AGG | + | chr7_3:69081551-69081570 | None:intergenic | 35.0% | |
| GAGATGCAAATCAACTCTAA+TGG | + | chr7_3:69081853-69081872 | None:intergenic | 35.0% | |
| AAATTGAGAACTGAGGCAGT+GGG | + | chr7_3:69079031-69079050 | None:intergenic | 40.0% | |
| GAGAGTGAAATTGAGAACTG+AGG | + | chr7_3:69079038-69079057 | None:intergenic | 40.0% | |
| GAATCGGTGAAAAGGGTTAT+AGG | + | chr7_3:69079065-69079084 | None:intergenic | 40.0% | |
| TTGAGATTCTTCTTCAGTGC+GGG | - | chr7_3:69079292-69079311 | Msa1119930:three_prime_UTR | 40.0% | |
| ATCGAACTCATATGTGGTTG+CGG | + | chr7_3:69079388-69079407 | None:intergenic | 40.0% | |
| !! | GTTTTGGTGAAGAAAGAGTG+TGG | - | chr7_3:69079546-69079565 | Msa1119930:intron | 40.0% |
| GTCTCAAACTCTGCAATGTT+TGG | + | chr7_3:69079991-69080010 | None:intergenic | 40.0% | |
| CACTTTCCTCTCATTATGCA+GGG | + | chr7_3:69080387-69080406 | None:intergenic | 40.0% | |
| ACACTTTCCTCTCATTATGC+AGG | + | chr7_3:69080388-69080407 | None:intergenic | 40.0% | |
| GATTCTGCCATTGGAACATA+AGG | + | chr7_3:69081087-69081106 | None:intergenic | 40.0% | |
| CTATCAAACGATTCTGCCAT+TGG | + | chr7_3:69081096-69081115 | None:intergenic | 40.0% | |
| !!! | GACTTTTTAGGATCAAGTGC+TGG | + | chr7_3:69081363-69081382 | None:intergenic | 40.0% |
| CATTATCAAATTACCGCACG+TGG | - | chr7_3:69081390-69081409 | Msa1119930:five_prime_UTR | 40.0% | |
| ! | TTTCAGGTGGGTAGAAATGA+TGG | - | chr7_3:69081641-69081660 | Msa1119930:five_prime_UTR | 40.0% |
| TTAGATGTTGTGCAGTGTGA+AGG | + | chr7_3:69081973-69081992 | None:intergenic | 40.0% | |
| CACACTGCACAACATCTAAT+TGG | - | chr7_3:69081974-69081993 | Msa1119930:five_prime_UTR | 40.0% | |
| GAAATTGAGAACTGAGGCAG+TGG | + | chr7_3:69079032-69079051 | None:intergenic | 45.0% | |
| !! | GAAGAAAGGTTGATAGTGGC+GGG | + | chr7_3:69079227-69079246 | None:intergenic | 45.0% |
| !! | GGAAGAAAGGTTGATAGTGG+CGG | + | chr7_3:69079228-69079247 | None:intergenic | 45.0% |
| TAACGGGAGAGATATTGGTG+AGG | - | chr7_3:69079317-69079336 | Msa1119930:exon | 45.0% | |
| TTATGTCGATGAGTCCGAGA+AGG | - | chr7_3:69079341-69079360 | Msa1119930:CDS | 45.0% | |
| GCAACCACATATGAGTTCGA+TGG | - | chr7_3:69079387-69079406 | Msa1119930:intron | 45.0% | |
| ! | GTTTGGATTGGAAGTTGACG+AGG | - | chr7_3:69079413-69079432 | Msa1119930:intron | 45.0% |
| AAGTTGACGAGGTGAGTGTA+GGG | - | chr7_3:69079424-69079443 | Msa1119930:intron | 45.0% | |
| TCGTCAAATTCATCGACCAC+TGG | + | chr7_3:69079477-69079496 | None:intergenic | 45.0% | |
| AGTGGTCGATGAATTTGACG+AGG | - | chr7_3:69079476-69079495 | Msa1119930:intron | 45.0% | |
| GATGAATTTGACGAGGACGA+GGG | - | chr7_3:69079483-69079502 | Msa1119930:intron | 45.0% | |
| ! | GTGAAGAAAGAGTGTGGTTC+CGG | - | chr7_3:69079552-69079571 | Msa1119930:intron | 45.0% |
| CCTCTCATTATGCAGGGAAA+GGG | + | chr7_3:69080381-69080400 | None:intergenic | 45.0% | |
| TCCTCTCATTATGCAGGGAA+AGG | + | chr7_3:69080382-69080401 | None:intergenic | 45.0% | |
| GCCAATAACTTTCAGAGGCT+AGG | - | chr7_3:69080415-69080434 | Msa1119930:intron | 45.0% | |
| ! | GCCTAGCCTCTGAAAGTTAT+TGG | + | chr7_3:69080419-69080438 | None:intergenic | 45.0% |
| GCTAGCAGTATCTACCTCAT+AGG | + | chr7_3:69080674-69080693 | None:intergenic | 45.0% | |
| CCAATACATACTTCTCAGGG+TGG | + | chr7_3:69081187-69081206 | None:intergenic | 45.0% | |
| ! | CCACCCTGAGAAGTATGTAT+TGG | - | chr7_3:69081184-69081203 | Msa1119930:intron | 45.0% |
| ATCAAATTACCGCACGTGGT+AGG | - | chr7_3:69081394-69081413 | Msa1119930:five_prime_UTR | 45.0% | |
| CTTATTTACCAGGTGCAAGG+TGG | + | chr7_3:69081548-69081567 | None:intergenic | 45.0% | |
| !! | CACGCAGCTTTTGAGAAAAC+GGG | + | chr7_3:69081669-69081688 | None:intergenic | 45.0% |
| !! | CCACGCAGCTTTTGAGAAAA+CGG | + | chr7_3:69081670-69081689 | None:intergenic | 45.0% |
| ! | GTAGCGGAGAAGAAGGTGAA+AGG | + | chr7_3:69079196-69079215 | None:intergenic | 50.0% |
| !! | TTGATAGTGGCGGGAGGTTA+GGG | + | chr7_3:69079218-69079237 | None:intergenic | 50.0% |
| !! | GGCGGAAGAAAGGTTGATAG+TGG | + | chr7_3:69079231-69079250 | None:intergenic | 50.0% |
| CTTCTTCAGTGCGGGCATAA+CGG | - | chr7_3:69079300-69079319 | Msa1119930:three_prime_UTR | 50.0% | |
| TTCTTCAGTGCGGGCATAAC+GGG | - | chr7_3:69079301-69079320 | Msa1119930:three_prime_UTR | 50.0% | |
| ! | GGGCATAACGGGAGAGATAT+TGG | - | chr7_3:69079312-69079331 | Msa1119930:three_prime_UTR | 50.0% |
| GAACTCATATGTGGTTGCGG+CGG | + | chr7_3:69079385-69079404 | None:intergenic | 50.0% | |
| TATGAGTTCGATGGCGCGTT+TGG | - | chr7_3:69079396-69079415 | Msa1119930:intron | 50.0% | |
| GAAGTTGACGAGGTGAGTGT+AGG | - | chr7_3:69079423-69079442 | Msa1119930:intron | 50.0% | |
| AGTTGACGAGGTGAGTGTAG+GGG | - | chr7_3:69079425-69079444 | Msa1119930:intron | 50.0% | |
| CGATGAATTTGACGAGGACG+AGG | - | chr7_3:69079482-69079501 | Msa1119930:intron | 50.0% | |
| AACAACCTCTCCATGCACGT+CGG | + | chr7_3:69079529-69079548 | None:intergenic | 50.0% | |
| ! | CGTGCATGGAGAGGTTGTTT+TGG | - | chr7_3:69079530-69079549 | Msa1119930:intron | 50.0% |
| ! | TTGCAGAGTTTGAGACCTGC+TGG | - | chr7_3:69079995-69080014 | Msa1119930:intron | 50.0% |
| ! | AGAGTTTGAGACCTGCTGGT+GGG | - | chr7_3:69079999-69080018 | Msa1119930:intron | 50.0% |
| CCCTTTCCCTGCATAATGAG+AGG | - | chr7_3:69080378-69080397 | Msa1119930:intron | 50.0% | |
| GCAGCGATGAAGAAGAGAAG+AGG | + | chr7_3:69080878-69080897 | None:intergenic | 50.0% | |
| ! | CAGGGTGGAAGTTTTCAGCA+TGG | + | chr7_3:69081172-69081191 | None:intergenic | 50.0% |
| AAATTACCGCACGTGGTAGG+AGG | - | chr7_3:69081397-69081416 | Msa1119930:five_prime_UTR | 50.0% | |
| ! | TTTTGACCTCCTACCACGTG+CGG | + | chr7_3:69081406-69081425 | None:intergenic | 50.0% |
| ! | CCGTTTTCTCAAAAGCTGCG+TGG | - | chr7_3:69081667-69081686 | Msa1119930:five_prime_UTR | 50.0% |
| GAGAACTGAGGCAGTGGGAT+GGG | + | chr7_3:69079026-69079045 | None:intergenic | 55.0% | |
| TGAGAACTGAGGCAGTGGGA+TGG | + | chr7_3:69079027-69079046 | None:intergenic | 55.0% | |
| !! | GGTTAGGGTAGCGGAGAAGA+AGG | + | chr7_3:69079203-69079222 | None:intergenic | 55.0% |
| !! | GTTGATAGTGGCGGGAGGTT+AGG | + | chr7_3:69079219-69079238 | None:intergenic | 55.0% |
| !! | GAAAGGTTGATAGTGGCGGG+AGG | + | chr7_3:69079224-69079243 | None:intergenic | 55.0% |
| GACAACAGCGAGGTTGACAG+CGG | + | chr7_3:69079252-69079271 | None:intergenic | 55.0% | |
| !! | CCTGTTCTGAGACAACAGCG+AGG | + | chr7_3:69079262-69079281 | None:intergenic | 55.0% |
| CCTCGCTGTTGTCTCAGAAC+AGG | - | chr7_3:69079259-69079278 | Msa1119930:three_prime_UTR | 55.0% | |
| GGCATGGGTCTCTACCTTCT+CGG | + | chr7_3:69079358-69079377 | None:intergenic | 55.0% | |
| CGCGCCATCGAACTCATATG+TGG | + | chr7_3:69079394-69079413 | None:intergenic | 55.0% | |
| GTTCGATGGCGCGTTTGGAT+TGG | - | chr7_3:69079401-69079420 | Msa1119930:intron | 55.0% | |
| !! | AGTGTAGGGGTTGGTGGTGT+TGG | - | chr7_3:69079438-69079457 | Msa1119930:intron | 55.0% |
| !! | GTGTAGGGGTTGGTGGTGTT+GGG | - | chr7_3:69079439-69079458 | Msa1119930:intron | 55.0% |
| ! | GAAAGAGTGTGGTTCCGGCA+CGG | - | chr7_3:69079557-69079576 | Msa1119930:intron | 55.0% |
| ! | AAAGAGTGTGGTTCCGGCAC+GGG | - | chr7_3:69079558-69079577 | Msa1119930:intron | 55.0% |
| GATGATCGAACTTCCCGTGC+CGG | + | chr7_3:69079574-69079593 | None:intergenic | 55.0% | |
| GGCACGGGAAGTTCGATCAT+CGG | - | chr7_3:69079573-69079592 | Msa1119930:intron | 55.0% | |
| ! | CAGAGTTTGAGACCTGCTGG+TGG | - | chr7_3:69079998-69080017 | Msa1119930:intron | 55.0% |
| ! | GAGTTTGAGACCTGCTGGTG+GGG | - | chr7_3:69080000-69080019 | Msa1119930:intron | 55.0% |
| CTGTTATCTACCCCACCAGC+AGG | + | chr7_3:69080013-69080032 | None:intergenic | 55.0% | |
| CTGCTGGTGGGGTAGATAAC+AGG | - | chr7_3:69080011-69080030 | Msa1119930:intron | 55.0% | |
| TTACCAGGTGCAAGGTGGAG+CGG | + | chr7_3:69081543-69081562 | None:intergenic | 55.0% | |
| AAGCTGCGTGGCGTTGTGTT+TGG | - | chr7_3:69081679-69081698 | Msa1119930:five_prime_UTR | 55.0% | |
| GGTTGACAGCGGCGGAAGAA+AGG | + | chr7_3:69079241-69079260 | None:intergenic | 60.0% | |
| AACAGCGAGGTTGACAGCGG+CGG | + | chr7_3:69079249-69079268 | None:intergenic | 60.0% | |
| ATATGTGGTTGCGGCGGCGT+CGG | + | chr7_3:69079379-69079398 | None:intergenic | 60.0% | |
| GACGAGGTGAGTGTAGGGGT+TGG | - | chr7_3:69079429-69079448 | Msa1119930:intron | 60.0% | |
| GAGGTGAGTGTAGGGGTTGG+TGG | - | chr7_3:69079432-69079451 | Msa1119930:intron | 60.0% | |
| !! | TAGGGGTTGGTGGTGTTGGG+TGG | - | chr7_3:69079442-69079461 | Msa1119930:intron | 60.0% |
| ! | TGGTGGTGTTGGGTGGAGTG+TGG | - | chr7_3:69079449-69079468 | Msa1119930:intron | 60.0% |
| TGGGTGGAGTGTGGATCCAG+TGG | - | chr7_3:69079458-69079477 | Msa1119930:intron | 60.0% | |
| TTGACGAGGACGAGGGAGCA+AGG | - | chr7_3:69079490-69079509 | Msa1119930:CDS | 60.0% | |
| AGGTTCCGACGTGCATGGAG+AGG | - | chr7_3:69079521-69079540 | Msa1119930:CDS | 60.0% | |
| ! | GTGGCGGGAGGTTAGGGTAG+CGG | + | chr7_3:69079212-69079231 | None:intergenic | 65.0% |
| GACGAGGGAGCAAGGCCAGA+CGG | - | chr7_3:69079498-69079517 | Msa1119930:CDS | 65.0% | |
| TGCACGTCGGAACCTCCGTC+TGG | + | chr7_3:69079516-69079535 | None:intergenic | 65.0% | |
| GACGGAGGTTCCGACGTGCA+TGG | - | chr7_3:69079516-69079535 | Msa1119930:CDS | 65.0% | |
| GAGGGAGCAAGGCCAGACGG+AGG | - | chr7_3:69079501-69079520 | Msa1119930:CDS | 70.0% | |
| GCACCGCTCCACCTTGCACC+TGG | - | chr7_3:69081537-69081556 | Msa1119930:five_prime_UTR | 70.0% | |
| !! | GGTTGCGGCGGCGTCGGCAT+GGG | + | chr7_3:69079373-69079392 | None:intergenic | 75.0% |
| !! | TGGTTGCGGCGGCGTCGGCA+TGG | + | chr7_3:69079374-69079393 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 69079017 | 69082029 | 69079017 | ID=Msa1119930;Name=Msa1119930 |
| chr7_3 | mRNA | 69079017 | 69082029 | 69079017 | ID=Msa1119930-mRNA-1;Parent=Msa1119930;Name=Msa1119930-mRNA-1;_AED=0.13;_eAED=0.13;_QI=917|0.8|0.66|1|0.6|0.5|6|316|85 |
| chr7_3 | exon | 69079017 | 69079399 | 69079017 | ID=Msa1119930-mRNA-1:exon:17433;Parent=Msa1119930-mRNA-1 |
| chr7_3 | exon | 69079488 | 69079542 | 69079488 | ID=Msa1119930-mRNA-1:exon:17432;Parent=Msa1119930-mRNA-1 |
| chr7_3 | exon | 69079635 | 69079729 | 69079635 | ID=Msa1119930-mRNA-1:exon:17431;Parent=Msa1119930-mRNA-1 |
| chr7_3 | exon | 69079851 | 69079943 | 69079851 | ID=Msa1119930-mRNA-1:exon:17430;Parent=Msa1119930-mRNA-1 |
| chr7_3 | exon | 69080958 | 69081128 | 69080958 | ID=Msa1119930-mRNA-1:exon:17429;Parent=Msa1119930-mRNA-1 |
| chr7_3 | exon | 69081336 | 69082029 | 69081336 | ID=Msa1119930-mRNA-1:exon:17428;Parent=Msa1119930-mRNA-1 |
| chr7_3 | five_prime_UTR | 69081336 | 69082029 | 69081336 | ID=Msa1119930-mRNA-1:five_prime_utr;Parent=Msa1119930-mRNA-1 |
| chr7_3 | five_prime_UTR | 69080958 | 69081128 | 69080958 | ID=Msa1119930-mRNA-1:five_prime_utr;Parent=Msa1119930-mRNA-1 |
| chr7_3 | five_prime_UTR | 69079892 | 69079943 | 69079892 | ID=Msa1119930-mRNA-1:five_prime_utr;Parent=Msa1119930-mRNA-1 |
| chr7_3 | CDS | 69079851 | 69079891 | 69079851 | ID=Msa1119930-mRNA-1:cds;Parent=Msa1119930-mRNA-1 |
| chr7_3 | CDS | 69079635 | 69079729 | 69079635 | ID=Msa1119930-mRNA-1:cds;Parent=Msa1119930-mRNA-1 |
| chr7_3 | CDS | 69079488 | 69079542 | 69079488 | ID=Msa1119930-mRNA-1:cds;Parent=Msa1119930-mRNA-1 |
| chr7_3 | CDS | 69079333 | 69079399 | 69079333 | ID=Msa1119930-mRNA-1:cds;Parent=Msa1119930-mRNA-1 |
| chr7_3 | three_prime_UTR | 69079017 | 69079332 | 69079017 | ID=Msa1119930-mRNA-1:three_prime_utr;Parent=Msa1119930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
