AlfalfaGEDB | Msa0891660

M. sativa cultivar zhongmu-4 / Msa0891660

KEGG: K05666
GO: GO:0000325 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031090 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098588 GO:0098805
PFAM: PF00664.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0891660	XP_013443342.1	94.113	1342	42	4	1	1336	114	1424	0.0	2559

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0891660	sp\|Q9LYS2\|AB10C_ARATH	63.197	1345	451	9	5	1337	141	1453	0.0	1704

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0891660	A0A072TIY3	94.113	1342	42	4	1	1336	114	1424	0.0	2559

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0102120	Msa0891660	0.801738	7.815088e-49	-8.615850e-47
Msa0344690	Msa0891660	-0.802446	5.589747e-49	-8.615850e-47
Msa0482190	Msa0891660	-0.814746	1.316985e-51	-8.615850e-47
Msa0485500	Msa0891660	-0.809019	2.327027e-50	-8.615850e-47
Msa0767080	Msa0891660	0.815501	8.953126e-52	-8.615850e-47
Msa0891650	Msa0891660	0.975062	2.869800e-139	-8.615850e-47
Msa0891660	Msa1258380	-0.811659	6.268730e-51	-8.615850e-47
Msa0891660	Msa1393040	0.802812	4.696664e-49	-8.615850e-47
Msa0891660	Msa1444250	-0.804980	1.664913e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0891660	MtrunA17_Chr6g0472531	94.113	1342	42	4	1	1336	114	1424	2559
Msa0891660	MtrunA17_Chr6g0463131	79.108	1345	240	5	3	1337	162	1475	2161
Msa0891660	MtrunA17_Chr6g0463121	78.067	1345	253	6	3	1337	162	1474	2139
Msa0891660	MtrunA17_Chr6g0463151	78.467	1305	244	4	39	1337	19	1292	2080
Msa0891660	MtrunA17_Chr6g0463181	75.931	1342	274	6	4	1337	158	1458	2065
Msa0891660	MtrunA17_Chr6g0471281	76.580	1345	274	5	3	1337	162	1475	2060
Msa0891660	MtrunA17_Chr6g0463141	74.380	1370	283	7	4	1337	162	1499	2033
Msa0891660	MtrunA17_Chr6g0463201	69.014	1349	372	9	3	1337	163	1479	1872
Msa0891660	MtrunA17_Chr6g0463211	66.521	1377	381	9	3	1332	197	1540	1802
Msa0891660	MtrunA17_Chr8g0341761	43.970	1335	696	10	17	1337	154	1450	1150

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0891660	AT3G59140.1	63.197	1345	451	9	5	1337	141	1453	1704
Msa0891660	AT3G21250.4	44.650	1299	668	8	57	1337	201	1466	1107
Msa0891660	AT3G21250.2	44.650	1299	668	8	57	1337	195	1460	1106
Msa0891660	AT3G21250.1	44.265	1299	662	9	57	1337	195	1449	1089
Msa0891660	AT3G21250.5	44.265	1299	662	9	57	1337	201	1455	1088
Msa0891660	AT1G04120.1	43.313	1316	664	10	61	1329	226	1506	1075
Msa0891660	AT1G04120.2	43.085	1316	662	10	61	1329	226	1501	1067
Msa0891660	AT1G04120.3	42.401	1316	641	11	61	1329	226	1471	1037
Msa0891660	AT3G60160.1	41.988	1298	697	8	54	1327	226	1491	1030
Msa0891660	AT3G60160.3	41.988	1298	697	8	54	1327	190	1455	1030

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Find 269 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTACTTGCATGCAA+AGG	0.624111	6_1:+67675232	None:intergenic
AAACATCAGTAAGAGAATAT+TGG	0.396218	6_1:+67671126	None:intergenic
AAACTGTTAACAGTTGTTGA+AGG	0.598213	6_1:-67671825	Msa0891660:CDS
AAAGAAGTAATGAGGATGAA+TGG	0.496013	6_1:-67672999	Msa0891660:CDS
AAATAAAGCACTAATAAGAG+TGG	0.605284	6_1:+67672238	None:intergenic
AAATAGAATCAAAGGCTGGG+AGG	0.679318	6_1:+67674201	None:intergenic
AAATTCAATGATAACCTCAA+AGG	0.583637	6_1:-67675052	Msa0891660:CDS
AAATTCTGCGGCATGTGAGA+TGG	0.567876	6_1:-67671004	Msa0891660:three_prime_UTR
AACAAGTCGGCTGCGGTGCG+AGG	0.569942	6_1:-67670926	Msa0891660:three_prime_UTR
AACACACTGATCAAGAGATA+TGG	0.363720	6_1:-67672061	Msa0891660:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCATAAAATCTTTCGTCAA+TGG	+	chr6_1:67671104-67671123	None:intergenic	30.0%
GTTGAATCCATTGATGAAAA+AGG	-	chr6_1:67671216-67671235	Msa0891660:CDS	30.0%
GAATGTAATGATGATTCATG+TGG	+	chr6_1:67671343-67671362	None:intergenic	30.0%
TGAATCATCATTACATTCGT+CGG	-	chr6_1:67671345-67671364	Msa0891660:intron	30.0%
TTACTAATGCAATACACAGT+TGG	+	chr6_1:67671780-67671799	None:intergenic	30.0%
CATTCTTTGTCTGTATTGTT+TGG	-	chr6_1:67672070-67672089	Msa0891660:CDS	30.0%
AAAACATTACTTGCATGCAA+AGG	+	chr6_1:67672153-67672172	None:intergenic	30.0%
TTATTGAAATTGAGCCTTTG+AGG	+	chr6_1:67672347-67672366	None:intergenic	30.0%
TGGAGAAGTTTCAATAACAA+AGG	-	chr6_1:67672506-67672525	Msa0891660:CDS	30.0%
GGAGAAGTTTCAATAACAAA+GGG	-	chr6_1:67672507-67672526	Msa0891660:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	67670831	67676573	67670831	ID=Msa0891660;Name=Msa0891660
chr6_1	mRNA	67670831	67676573	67670831	ID=Msa0891660-mRNA-1;Parent=Msa0891660;Name=Msa0891660-mRNA-1;_AED=0.07;_eAED=0.07;_QI=152\|1\|0.8\|1\|1\|1\|10\|323\|1337
chr6_1	exon	67670831	67671266	67670831	ID=Msa0891660-mRNA-1:exon:12017;Parent=Msa0891660-mRNA-1
chr6_1	exon	67671595	67671985	67671595	ID=Msa0891660-mRNA-1:exon:12016;Parent=Msa0891660-mRNA-1
chr6_1	exon	67672058	67672363	67672058	ID=Msa0891660-mRNA-1:exon:12015;Parent=Msa0891660-mRNA-1
chr6_1	exon	67672458	67672672	67672458	ID=Msa0891660-mRNA-1:exon:12014;Parent=Msa0891660-mRNA-1
chr6_1	exon	67672748	67673042	67672748	ID=Msa0891660-mRNA-1:exon:12013;Parent=Msa0891660-mRNA-1
chr6_1	exon	67673133	67673297	67673133	ID=Msa0891660-mRNA-1:exon:12012;Parent=Msa0891660-mRNA-1
chr6_1	exon	67673384	67673953	67673384	ID=Msa0891660-mRNA-1:exon:12011;Parent=Msa0891660-mRNA-1
chr6_1	exon	67674199	67674285	67674199	ID=Msa0891660-mRNA-1:exon:12010;Parent=Msa0891660-mRNA-1
chr6_1	exon	67674366	67674686	67674366	ID=Msa0891660-mRNA-1:exon:12009;Parent=Msa0891660-mRNA-1
chr6_1	exon	67674871	67676573	67674871	ID=Msa0891660-mRNA-1:exon:12008;Parent=Msa0891660-mRNA-1
chr6_1	five_prime_UTR	67676422	67676573	67676422	ID=Msa0891660-mRNA-1:five_prime_utr;Parent=Msa0891660-mRNA-1
chr6_1	CDS	67674871	67676421	67674871	ID=Msa0891660-mRNA-1:cds;Parent=Msa0891660-mRNA-1
chr6_1	CDS	67674366	67674686	67674366	ID=Msa0891660-mRNA-1:cds;Parent=Msa0891660-mRNA-1
chr6_1	CDS	67674199	67674285	67674199	ID=Msa0891660-mRNA-1:cds;Parent=Msa0891660-mRNA-1
chr6_1	CDS	67673384	67673953	67673384	ID=Msa0891660-mRNA-1:cds;Parent=Msa0891660-mRNA-1
chr6_1	CDS	67673133	67673297	67673133	ID=Msa0891660-mRNA-1:cds;Parent=Msa0891660-mRNA-1
chr6_1	CDS	67672748	67673042	67672748	ID=Msa0891660-mRNA-1:cds;Parent=Msa0891660-mRNA-1
chr6_1	CDS	67672458	67672672	67672458	ID=Msa0891660-mRNA-1:cds;Parent=Msa0891660-mRNA-1
chr6_1	CDS	67672058	67672363	67672058	ID=Msa0891660-mRNA-1:cds;Parent=Msa0891660-mRNA-1
chr6_1	CDS	67671595	67671985	67671595	ID=Msa0891660-mRNA-1:cds;Parent=Msa0891660-mRNA-1
chr6_1	CDS	67671154	67671266	67671154	ID=Msa0891660-mRNA-1:cds;Parent=Msa0891660-mRNA-1
chr6_1	three_prime_UTR	67670831	67671153	67670831	ID=Msa0891660-mRNA-1:three_prime_utr;Parent=Msa0891660-mRNA-1

Gene Sequence

>Msa0891660

ATGTCTTCTTATGCAATCGGTGGTAGCGAACTCTCCTTCAACGCAGTTTTAGATGTTCTATCTTTTTCTGGAGCAACTTTACTTCTGTTATGCACATACCAAGCGTGTACGCGTGAATCCATTGACGAAAGATTTTATGCTCCATTAAATGGTCAGCTCAATGAAGTTGATCCTGTTAGCAATATTACCCCATTTTCCAAGGCTGGATTCTTCAGTAAGATTTCGTTTTGGTGGTTGAATCCATTGATGAAAAAGGGTCAAGAGAAAACACTTGTAGATGAAGATATCCCAAAGTTAAGAGAGTTTGACCGAGCAAAAAGTTATTTGTCATTTGTAGAACAGTTAAACAAACAAAAACCACATGAATCATCATTACATTCGTCGGTCTTTTGGACAATAATTTTGTGCTACCAGAGAGAGATTTTGATAACAGGACTCTTTGCTTTGCTCAAGGTACTTGCTCTAACTTCTAGCCCTCTATTTCTGAATGAATTTATATCGGTTGCTGAAGGCAATACAAGTTTCAATTATCAAGGTTATATATTAGCCATATCACTCTTCTTTATAAAGATCATTGGATCCGTATCGCAAAGACAATGGTATTTCCGGAGTAGACTTGTTGGGATGAAAGTTAGATCACTACTTAATGCATCCGTTTATAAAAAAATGTTACGGCTGTCCAGTTCTGCTAGATTGATTCACTCTAGTGGTGAGATAATCAATTATATTATCGTGGATGCTTATAGAATTGGAGAATTTCCATTTTGGTTTCACCAGACTTGGACAACAAGCCTCCAACTGTGTATTGCATTAGTAATTCTTTTCCGCACAATTGGACTAGCAATACTAGCATCATTGGCAATGATAATTCTCACTATGCTTTGCAATGCTTACCTAGCCAAGTTAGAGCACAAGTTTCAAAGGCAACTTATGGTGGCACAAAATGAGAGATTAAAGGCTAGTTTTGAGGCTTTTGTGACTATGAAAGTGTTGAAGTTATATGCATGGGAAACACATTTTAAAAATGTTGTATATTACTTACGAAATGTGGAACTCAAATTGCTATCAGCAGTGCAGTTAAGAAAGGCATTCTTTGTCTGTATTGTTTGGACATCACCATTGTTGGTATCTGCTGCTTCTTTTCTAGCATGTTACTTTCTGAAAGTTCCTTTGCATGCAAGTAATGTTTTCACTATTGTGGCAACTTTGCGCCTCATTCAAGAACCAATTTCAAGCATCCCAGATGTTATTGCAGTGATCATTGAGGCAAAAGTTGCTTTCTCTCGGATTGTTAATTTCCTTGAGGCACCAGAACTACAGAGAGAAAATTTCAAGAAAAAATGCTTCAAATTCAATGATAACCTCAAAGGCTCAATTTCAATAAAATGTTCTGACTTTTCATGGGAAGGTAATGCATCAAAACCAACACTGAGGAACATAAGTATGGAGGTTAGACATGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCAGGAAAATCAACTCTCATTGCAACGATTCTTGGAGAAGTTTCAATAACAAAGGGAACGATTGACGTTCATGGGAAGTTTGCGTATGTTTCTCAAACAGCATGGATACAAACAGGAACAATACGTGAAAATATTTTGTTTGGATCTGAGTTGGATGATCAAAGATATCAAGAGACACTTCAAAAGTCTTCACTGGTAAAGGACCTTGAGTTGCTTCCATATGGTGACCTCACTGAAATAGGCGAGAGAGGAGTTAATTTAAGTGGAGGTCAAAAGCAGCGAATTCAACTTGCTCGTGCTCTTTATCAGAATGCTGATATATATCTATTAGACGATCCATTTAGTGCTGTTGATGCACATACTGCGAAAAATTTGTTTAATGAATACATCATGGAAGGACTCAAAGGGAAAACACTCATACTTGTTACTCATCAAGTTGACTTCCTCCCAGCCTTTGATTCTATTTTGTTGATGTCTAATGGAGAAATCCTACAATCTGGTCCATATCACCAACTAACTACCTCAAGCCAAGAATTCAATGACCTTGTCAACGCTCACAAAGAAACGGCTGGTTCTGACCAACTTGCAAGTCCTACTTTTTCTTCCATAAAGAGTATGCAAGCTTCGGTGTTGAATCAGTATAAAGCACCAATTGGAAATCAATTGATTCATCAAGAAGAGAGAGAGAAAGGCGACACAGGATTGAAGCCTTACATACAATATCTGAATCAGATGAAAGGCTATATATTATTCTCTACGGCTTTTCTTTGTCACCTTATTTTTGTGTTTTGTCAGATATTGCAAAACTCGTGGATGGCTTCTAATGTTGACAATCTCCTTGTCAGCACATTGCAATTGATTTTAGTTCATCTCCTTATCGGTGGTTTTTCAACAGTTTTTTTGTTCATCAGATGTTTACTTATAGTTACTTTGGGTCTTAAATCATCAAAAGATTTATTTTCACAGTTGATGAACTCTCTCTTTCATGCACCGATGTCATTTTATGACTCTACACCATTGGGAAGGGTACTTAGTAGGGTCTCCTCTGATCTAAGCATTATGGATCTTGACCTTCCCTTTAGCCTCAGTTATTCAATGGGAGCCACTATAAATTTTTATTCTAGTCTTACGGTTTTAGCAGTTGTGACATGGCAAGTCTTAATTGTCGCTATACCAATGGTTTATGTAGTTATTCGCATGCAGAGATACTACATAGCCTCTGAAAAAGAAGTAATGAGGATGAATGGCACAACAAAGTCGTCTTTAGCTAATCATGTAAATGAAACTGTTGCTGGAGCTGCAACTATAAGGGCTTTTGAGGAGGAAGATTGTTTTTTTGAGAAAAACCTTGACCTAATTGATATAAATGCTAGTGCTTTTTTCCATAGTTTTGCCTCAAAAGAGTGGTTGATCCAACGGTTAGAAATAATCAGTGCAGTTGTTCTTACCACTGGAGCACTTTGCATGGTTATGCTCCCTCCCGGAACATTCACCTCAGGAATTATTGGCATGGCTTTGTCTTACGGCCTTTCACTAAACAATTCCTTAGTATTTTCAATTCAAAATCAATGCACTCTTGCAAATGACATAATATCAGTAGAGAGACTAAATCAATATATGCATATACAAAGTGAGGCCAAAGAAACTGTAGAAGATAACCGTCCTCCTCTGAATTGGCCAGTTGCAGGCAAAGTAGAAATAAACGACTTAAAGATACGATACAGGCCTGACGGACCACTAGTACTTGATGGGATTACATGCACGTTTACCGCAGGACACAAGATTGGTATTGTTGGAAGAACAGGAAGTGGGAAATCCACTCTTATTAGTGCTTTATTTCGTCTAGTGGAACCAGCAGGAGGAAAAATTATAGTCGATGGACTAGACATATCATCTATTGGCCTTCAAGATTTGAGGTCACGTTTTGGGATTATACCTCAGGATCCTACCCTCTTTAATGGGACTGTAAAATATAATTTGGACCCTTTATCTCAACACACTGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCGAGAAGTTGTCCTAGGGAAAGAAGAGGGTTTAAACTCCTCAGGTACACTTTCATGCTTCATTGTTATAGCTCTTCTGGAAGCACATTTTTTTCCCATGTTAGTAATGAATAGTGAAAAACTGTTAACAGTTGTTGAAGGTGGATCAAATTGGAGCATGGGACAAAGACAGTTATTTTGTTTAGCGCGCGCTCTTTTGAGGAGAAGTAGGATATTGGTGTTGGACGAAGCAACTGCATCAGTTGATAATTCTACAGATCTGATTCTGCAAAAAATCATTAGGGCTGAGTTTGCAGATTGTACAGTGATCACAGTAGCACACAGGATACCAACTGTGATGGATTGCAATATGGTTCTTTCTATAAGTGATGGAAAATTGGCTGAGTATGATGAGCCCACAATCTTGATGAAGAGAGAAGAATCATTGTTCAGGAAACTTGTCAAGGAATACCGCTCTTATGTTCAGTCTGCCAAATCACATTGA

Protein sequence

>Msa0891660

MSSYAIGGSELSFNAVLDVLSFSGATLLLLCTYQACTRESIDERFYAPLNGQLNEVDPVSNITPFSKAGFFSKISFWWLNPLMKKGQEKTLVDEDIPKLREFDRAKSYLSFVEQLNKQKPHESSLHSSVFWTIILCYQREILITGLFALLKVLALTSSPLFLNEFISVAEGNTSFNYQGYILAISLFFIKIIGSVSQRQWYFRSRLVGMKVRSLLNASVYKKMLRLSSSARLIHSSGEIINYIIVDAYRIGEFPFWFHQTWTTSLQLCIALVILFRTIGLAILASLAMIILTMLCNAYLAKLEHKFQRQLMVAQNERLKASFEAFVTMKVLKLYAWETHFKNVVYYLRNVELKLLSAVQLRKAFFVCIVWTSPLLVSAASFLACYFLKVPLHASNVFTIVATLRLIQEPISSIPDVIAVIIEAKVAFSRIVNFLEAPELQRENFKKKCFKFNDNLKGSISIKCSDFSWEGNASKPTLRNISMEVRHGQKVAICGEVGSGKSTLIATILGEVSITKGTIDVHGKFAYVSQTAWIQTGTIRENILFGSELDDQRYQETLQKSSLVKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTAKNLFNEYIMEGLKGKTLILVTHQVDFLPAFDSILLMSNGEILQSGPYHQLTTSSQEFNDLVNAHKETAGSDQLASPTFSSIKSMQASVLNQYKAPIGNQLIHQEEREKGDTGLKPYIQYLNQMKGYILFSTAFLCHLIFVFCQILQNSWMASNVDNLLVSTLQLILVHLLIGGFSTVFLFIRCLLIVTLGLKSSKDLFSQLMNSLFHAPMSFYDSTPLGRVLSRVSSDLSIMDLDLPFSLSYSMGATINFYSSLTVLAVVTWQVLIVAIPMVYVVIRMQRYYIASEKEVMRMNGTTKSSLANHVNETVAGAATIRAFEEEDCFFEKNLDLIDINASAFFHSFASKEWLIQRLEIISAVVLTTGALCMVMLPPGTFTSGIIGMALSYGLSLNNSLVFSIQNQCTLANDIISVERLNQYMHIQSEAKETVEDNRPPLNWPVAGKVEINDLKIRYRPDGPLVLDGITCTFTAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIIVDGLDISSIGLQDLRSRFGIIPQDPTLFNGTVKYNLDPLSQHTDQEIWEVLGKCQLREVVLGKEEGLNSSGTLSCFIVIALLEAHFFPMLVMNSEKLLTVVEGGSNWSMGQRQLFCLARALLRRSRILVLDEATASVDNSTDLILQKIIRAEFADCTVITVAHRIPTVMDCNMVLSISDGKLAEYDEPTILMKREESLFRKLVKEYRSYVQSAKSH*