AlfalfaGEDB | Msa0482190

M. sativa cultivar zhongmu-4 / Msa0482190

KEGG: K00939
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004017 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0030554 GO:0031090 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0034654 GO:0035639 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046872 GO:0046914 GO:0046940 GO:0050145 GO:0050896 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576
PFAM: PF00406.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0482190	XP_003608862.1	99.588	243	1	0	1	243	1	243	2.37e-176	494

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0482190	sp\|Q08480\|KAD4_ORYSJ	91.286	241	21	0	2	242	3	243	1.92e-166	462

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0482190	B7FN18	99.588	243	1	0	1	243	1	243	1.13e-176	494

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0482190	0.831378	1.727369e-55	-8.615850e-47
Msa0004790	Msa0482190	0.848259	6.867434e-60	-8.615850e-47
Msa0005350	Msa0482190	-0.828016	1.136463e-54	-8.615850e-47
Msa0006700	Msa0482190	-0.809151	2.180141e-50	-8.615850e-47
Msa0011720	Msa0482190	-0.825200	5.337163e-54	-8.615850e-47
Msa0013050	Msa0482190	0.808113	3.632828e-50	-8.615850e-47
Msa0014800	Msa0482190	-0.809022	2.323707e-50	-8.615850e-47
Msa0015100	Msa0482190	-0.805327	1.408163e-49	-8.615850e-47
Msa0029850	Msa0482190	-0.868534	6.079188e-66	-8.615850e-47
Msa0033440	Msa0482190	-0.806433	8.246617e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0482190	MtrunA17_Chr4g0057771	99.588	243	1	0	1	243	1	243	2.18e-180	494
Msa0482190	MtrunA17_Chr4g0017231	37.559	213	122	4	31	242	89	291	1.20e-42	146
Msa0482190	MtrunA17_Chr2g0305051	37.778	225	123	5	23	243	66	277	1.35e-40	146
Msa0482190	MtrunA17_Chr1g0181801	31.683	202	120	4	31	219	113	309	2.03e-28	110
Msa0482190	MtrunA17_Chr7g0263541	29.703	202	124	4	31	219	38	234	1.69e-24	98.2
Msa0482190	MtrunA17_Chr8g0337051	25.714	210	123	4	32	241	24	200	6.11e-19	82.0
Msa0482190	MtrunA17_Chr5g0428971	27.143	210	120	4	33	242	35	211	4.03e-17	77.4
Msa0482190	MtrunA17_Chr4g0018221	26.667	210	121	4	33	242	58	234	3.70e-16	75.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0482190	AT5G63400.1	81.743	241	44	0	2	242	6	246	1.65e-152	424
Msa0482190	AT5G50370.1	79.654	231	47	0	2	232	7	237	6.79e-144	402
Msa0482190	AT5G50370.2	82.381	210	37	0	2	211	7	216	5.04e-135	379
Msa0482190	AT5G63400.2	85.000	180	27	0	2	181	6	185	1.63e-116	331
Msa0482190	AT5G35170.2	34.821	224	135	4	21	243	71	284	1.25e-38	141
Msa0482190	AT5G35170.1	34.821	224	135	4	21	243	71	284	1.42e-38	141
Msa0482190	AT5G47840.1	35.047	214	128	4	31	243	66	269	1.59e-36	130
Msa0482190	AT5G47840.2	38.333	180	102	3	31	209	66	237	2.20e-34	124
Msa0482190	AT2G37250.1	30.693	202	122	4	31	219	53	249	4.11e-26	103
Msa0482190	AT2G39270.1	30.603	232	132	6	10	219	38	262	5.61e-25	100

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Find 80 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGAAAAGAGAAGAGG+AGG	0.487908	3_3:+88628604	None:intergenic
AAAGAGAAAAGAGAAGAGGA+GGG	0.489132	3_3:+88628605	None:intergenic
AACTGTGGTCCAAGCACAGA+AGG	0.583530	3_3:-88626382	Msa0482190:intron
AAGAAACCGTCATGTCAGAA+AGG	0.567615	3_3:-88626429	Msa0482190:CDS
AAGACGTTTGTCAGGTTTGG+AGG	0.481705	3_3:+88628403	None:intergenic
AAGAGAAGAGGAGGGTAATT+TGG	0.263670	3_3:+88628613	None:intergenic
AAGCAGCAGTTCGATCCCGA+GGG	0.667947	3_3:+88624565	None:intergenic
AAGGCAATACCTTCTGTGCT+TGG	0.492764	3_3:+88626373	None:intergenic
AATAAGACGTTTGTCAGGTT+TGG	0.344040	3_3:+88628400	None:intergenic
AATTGATGACGCAATCCTTG+AGG	0.634543	3_3:-88626166	Msa0482190:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTATACTTTGCGTTAGGTT+GGG	+	chr3_3:88624282-88624301	None:intergenic	30.0%
TAAGCAACAAACAGTAAGTT+CGG	+	chr3_3:88624629-88624648	None:intergenic	30.0%
GTAAAAATTCCTTTGTCTGT+TGG	-	chr3_3:88625177-88625196	Msa0482190:intron	30.0%
CTATATCAGCTAGTAAAAAC+TGG	+	chr3_3:88625539-88625558	None:intergenic	30.0%
AATATGGAGAATAACCTAAG+AGG	+	chr3_3:88626136-88626155	None:intergenic	30.0%
TATTAAAGCGAAAGAAGCTA+TGG	-	chr3_3:88626311-88626330	Msa0482190:intron	30.0%
TGCTATTCTTCTACTAACTA+TGG	-	chr3_3:88626652-88626671	Msa0482190:CDS	30.0%
AGCTGAAAAGAAAAAAAGGA+AGG	+	chr3_3:88626679-88626698	None:intergenic	30.0%
AATCATACTTAGATCCAGTT+TGG	+	chr3_3:88627112-88627131	None:intergenic	30.0%
TGTGAATGTTGAATGAAATG+AGG	-	chr3_3:88627204-88627223	Msa0482190:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	88624215	88628726	88624215	ID=Msa0482190;Name=Msa0482190
chr3_3	mRNA	88624215	88628726	88624215	ID=Msa0482190-mRNA-1;Parent=Msa0482190;Name=Msa0482190-mRNA-1;_AED=0.06;_eAED=0.06;_QI=228\|1\|1\|1\|1\|1\|6\|386\|243
chr3_3	exon	88624215	88624702	88624215	ID=Msa0482190-mRNA-1:exon:25963;Parent=Msa0482190-mRNA-1
chr3_3	exon	88625454	88625543	88625454	ID=Msa0482190-mRNA-1:exon:25962;Parent=Msa0482190-mRNA-1
chr3_3	exon	88626077	88626244	88626077	ID=Msa0482190-mRNA-1:exon:25961;Parent=Msa0482190-mRNA-1
chr3_3	exon	88626383	88626502	88626383	ID=Msa0482190-mRNA-1:exon:25960;Parent=Msa0482190-mRNA-1
chr3_3	exon	88626603	88626748	88626603	ID=Msa0482190-mRNA-1:exon:25959;Parent=Msa0482190-mRNA-1
chr3_3	exon	88628393	88628726	88628393	ID=Msa0482190-mRNA-1:exon:25958;Parent=Msa0482190-mRNA-1
chr3_3	five_prime_UTR	88628499	88628726	88628499	ID=Msa0482190-mRNA-1:five_prime_utr;Parent=Msa0482190-mRNA-1
chr3_3	CDS	88628393	88628498	88628393	ID=Msa0482190-mRNA-1:cds;Parent=Msa0482190-mRNA-1
chr3_3	CDS	88626603	88626748	88626603	ID=Msa0482190-mRNA-1:cds;Parent=Msa0482190-mRNA-1
chr3_3	CDS	88626383	88626502	88626383	ID=Msa0482190-mRNA-1:cds;Parent=Msa0482190-mRNA-1
chr3_3	CDS	88626077	88626244	88626077	ID=Msa0482190-mRNA-1:cds;Parent=Msa0482190-mRNA-1
chr3_3	CDS	88625454	88625543	88625454	ID=Msa0482190-mRNA-1:cds;Parent=Msa0482190-mRNA-1
chr3_3	CDS	88624601	88624702	88624601	ID=Msa0482190-mRNA-1:cds;Parent=Msa0482190-mRNA-1
chr3_3	three_prime_UTR	88624215	88624600	88624215	ID=Msa0482190-mRNA-1:three_prime_utr;Parent=Msa0482190-mRNA-1

Gene Sequence

>Msa0482190

ATGGCGAGTTCTAACTTGGAAGATGTTCCTTCTGTTGATCTCATGTCTGAGTTACTTCGTCGTTTCAAATGTTCCTCCAAACCTGACAAACGTCTTATTCTCGTTGGCCCACCTGGATCTGGAAAAGGTACCCAGTCGCCAATCATTAAGGATGAGTACTGCTTATGCCACTTGGCTACTGGTGATATGTTGAGAGCAGCTGTAGCAGCTAAAACCCCTCTTGGTATTAAAGCGAAAGAAGCTATGGAAAAGGGAGAACTTGTTTCTGATGACTTGGTTGTTGGCATCATTGATGAAGCAATGAAGAAACCGTCATGTCAGAAAGGTTTCATTCTTGATGGTTTTCCAAGAACTGTGGTCCAAGCACAGAAGCTTGATGAGATGCTGCAGAAACAGGGTGCTAAAATTGACAAAGTGCTCAATTTTGCAATTGATGACGCAATCCTTGAGGAGCGAATTACTGGACGCTGGATACACCCATCCAGTGGCAGAACCTACCATACAAAGTTTGCTCCTCCCAAGGTTTCTGGGGTTGATGATGTTACTGGTGAGCCTCTTATCCAGCGCAAGGATGACACTGCAGCTGTTCTTAAGTCAAGACTCGAGGCGTTTCACAGGCAAACTGAACCGGTTATTGATTACTATTCGAAAAAGGGCATTGTTGCTAGTCTCCATGCTGAAAAACCTCCCAAAGAGGTGACATCTGAGGTCGAGAAAGTGCTGTCTCAATAG

Protein sequence

>Msa0482190

MASSNLEDVPSVDLMSELLRRFKCSSKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMEKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLQKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVSGVDDVTGEPLIQRKDDTAAVLKSRLEAFHRQTEPVIDYYSKKGIVASLHAEKPPKEVTSEVEKVLSQ*