AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0344690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344690 MtrunA17_Chr3g0077161 91.837 98 4 1 1 94 1 98 5.90e-61 180
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344690 AT1G72170.1 68.889 90 24 2 1 87 1 89 9.59e-40 127
Msa0344690 AT1G22520.1 73.418 79 17 1 14 88 12 90 9.36e-38 122
Msa0344690 AT1G22520.2 73.418 79 17 1 14 88 12 90 1.16e-36 122

Find 53 sgRNAs with CRISPR-Local

Find 507 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATAGATGATGCTATATT+TGG 0.117210 3_1:+3474450 Msa0344690:exon
CGCTGGGCTTCTATTGCTTT+TGG 0.217123 3_1:+3473746 Msa0344690:CDS
TTCGGTTGTGCAAGCTTTGC+TGG 0.240747 3_1:-3473827 None:intergenic
CGATGTTTGAATTAATAGTA+TGG 0.283744 3_1:+3474785 Msa0344690:three_prime_UTR
GAATGTTCTCGTCTGTTTGA+TGG 0.310140 3_1:+3473800 Msa0344690:CDS
TAAACATAGTGCAGAATTAC+AGG 0.331734 3_1:-3474625 None:intergenic
TTTGGTGCTGGAGTGGGAAT+AGG 0.400010 3_1:+3473764 Msa0344690:CDS
TATATTTGGATCCTGGTTCC+TGG 0.403974 3_1:+3474464 Msa0344690:three_prime_UTR
TAGGGAGTCCTCAGACTCGC+TGG 0.408022 3_1:+3473729 Msa0344690:intron
ATGAAATCAATGTGATTTCT+CGG 0.413662 3_1:-3468220 None:intergenic
CTAATTATCTTTATTCCATA+CGG 0.417032 3_1:+3474692 Msa0344690:three_prime_UTR
TCCAACTCGTTCCGTTCCGA+TGG 0.420966 3_1:+3468331 Msa0344690:exon
GTGATTTCTCGGGTCGGGTC+GGG 0.426564 3_1:-3468209 None:intergenic
ATCAAGGCAGGCATCCCATT+TGG 0.436230 3_1:-3468399 None:intergenic
CAGAATTACAGGAGAACAAA+AGG 0.443509 3_1:-3474614 None:intergenic
TAAAGGAACAATCAATAGTC+AGG 0.443513 3_1:-3474507 None:intergenic
AGTATGACGTCGATGCCAAA+TGG 0.464332 3_1:+3468384 Msa0344690:CDS
TGTGATTTCTCGGGTCGGGT+CGG 0.471236 3_1:-3468210 None:intergenic
GAGGAGACCGCCGAAAGCAC+CGG 0.471355 3_1:-3468456 None:intergenic
GCCGAAAGCACCGGCAAAAG+AGG 0.478465 3_1:-3468447 None:intergenic
AGCTTGGAAATAAATTTCCA+TGG 0.487182 3_1:-3474586 None:intergenic
TGTGCTACCTCTGAGTCCTT+CGG 0.490928 3_1:-3473845 None:intergenic
TGTTTCACTGTCCAGGAACC+AGG 0.491220 3_1:-3474475 None:intergenic
ATGATGCTATATTTGGATCC+TGG 0.491507 3_1:+3474457 Msa0344690:three_prime_UTR
AATGCTCTGTTTCACTGTCC+AGG 0.494714 3_1:-3474482 None:intergenic
TAATTATCTTTATTCCATAC+GGG 0.497275 3_1:+3474693 Msa0344690:three_prime_UTR
TCAATGTGATTTCTCGGGTC+GGG 0.502238 3_1:-3468214 None:intergenic
TTCATTTCATTCAACTAAGA+CGG 0.509975 3_1:+3468294 Msa0344690:five_prime_UTR
AGCGGCGGACGGTGAGATCA+AGG 0.514989 3_1:-3468415 None:intergenic
TGAAATCAATGTGATTTCTC+GGG 0.518337 3_1:-3468219 None:intergenic
TAAATTAACAATACTGCCCA+TGG 0.526410 3_1:+3474569 Msa0344690:three_prime_UTR
GTGGGCTGGGCGAGGCCTTG+TGG 0.529050 3_1:+3468175 Msa0344690:five_prime_UTR
ATAGAAGCCCAGCGAGTCTG+AGG 0.535981 3_1:-3473737 None:intergenic
CAATAGCTATAACTGAGTAA+AGG 0.539456 3_1:-3474524 None:intergenic
ATCAATGTGATTTCTCGGGT+CGG 0.544038 3_1:-3468215 None:intergenic
GTATGACGTCGATGCCAAAT+GGG 0.550085 3_1:+3468385 Msa0344690:CDS
CCAACTCGTTCCGTTCCGAT+GGG 0.554127 3_1:+3468332 Msa0344690:exon
GGAGAAGGTACTGACTGAAA+AGG 0.557850 3_1:-3468478 None:intergenic
AGAACAAAAGGATAACAGCT+TGG 0.559366 3_1:-3474602 None:intergenic
CGGGTTGTGTTTAAACCACA+AGG 0.562664 3_1:-3468190 None:intergenic
CCCATCGGAACGGAACGAGT+TGG 0.566539 3_1:-3468332 None:intergenic
ATCGTATGCAAAATACATGT+AGG 0.566794 3_1:-3474766 None:intergenic
GCGGACGGTGAGATCAAGGC+AGG 0.574717 3_1:-3468411 None:intergenic
ATTTCATTCAACTAAGACGG+TGG 0.583166 3_1:+3468297 Msa0344690:five_prime_UTR
AGGGAGTCCTCAGACTCGCT+GGG 0.588615 3_1:+3473730 Msa0344690:intron
AGCAAAGCTTGCACAACCGA+AGG 0.600829 3_1:+3473829 Msa0344690:CDS
GCTTGGAAATAAATTTCCAT+GGG 0.603610 3_1:-3474585 None:intergenic
GGAGTAAACGAAGCGGCGGA+CGG 0.621586 3_1:-3468426 None:intergenic
GAAGGTACTGACTGAAAAGG+AGG 0.624142 3_1:-3468475 None:intergenic
AAGAGGAGTAAACGAAGCGG+CGG 0.665689 3_1:-3468430 None:intergenic
TTTCATTGAGAGCACGCACG+CGG 0.669006 3_1:+3468237 Msa0344690:five_prime_UTR
TGCACAACCGAAGGACTCAG+AGG 0.701693 3_1:+3473838 Msa0344690:CDS
CAAAAGAGGAGTAAACGAAG+CGG 0.703591 3_1:-3468433 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATTATAGAATGAA+AGG - chr3_1:3468650-3468669 None:intergenic 10.0%
!! ATGATTTATATTAAAGAATT+AGG + chr3_1:3469101-3469120 Msa0344690:intron 10.0%
!! TGATTTATATTAAAGAATTA+GGG + chr3_1:3469102-3469121 Msa0344690:intron 10.0%
!!! AAATTGTTTTTTATAGTTTA+AGG - chr3_1:3469308-3469327 None:intergenic 10.0%
!! AACTATAAAAAACAATTTAA+AGG + chr3_1:3469310-3469329 Msa0344690:intron 10.0%
!!! AATCACATAATTTTAAAATT+AGG + chr3_1:3471569-3471588 Msa0344690:intron 10.0%
!!! ATCACATAATTTTAAAATTA+GGG + chr3_1:3471570-3471589 Msa0344690:intron 10.0%
!!! TAGTTTATACTTTTTTTTTT+TGG - chr3_1:3472420-3472439 None:intergenic 10.0%
!!! ATTAGTTTATACTTTTTTTT+TGG - chr3_1:3472422-3472441 None:intergenic 10.0%
!!! TAGATTTTTATTTTTTTAGA+AGG - chr3_1:3472900-3472919 None:intergenic 10.0%
!! AAAAATAGAAATATAGTATT+GGG - chr3_1:3473389-3473408 None:intergenic 10.0%
!! TAAAAATAGAAATATAGTAT+TGG - chr3_1:3473390-3473409 None:intergenic 10.0%
!! TTAATTCCATAATTATAATT+TGG - chr3_1:3473689-3473708 None:intergenic 10.0%
!! AATAATATACAGTTACAATT+AGG - chr3_1:3468547-3468566 None:intergenic 15.0%
!! AATTGTAACTGTATATTATT+AGG + chr3_1:3468547-3468566 Msa0344690:intron 15.0%
!! ATTGTAACTGTATATTATTA+GGG + chr3_1:3468548-3468567 Msa0344690:intron 15.0%
!!! AAATTGTTTTTTATGGTTTA+AGG - chr3_1:3469337-3469356 None:intergenic 15.0%
!! AACCATAAAAAACAATTTAA+AGG + chr3_1:3469339-3469358 Msa0344690:intron 15.0%
!!! TAGTTGATTTTAATAGTTTA+GGG + chr3_1:3469464-3469483 Msa0344690:intron 15.0%
!!! ATTAAGCCTTTAAATTTTAA+AGG - chr3_1:3470205-3470224 None:intergenic 15.0%
!!! TCACATAATTTTAAAATTAG+GGG + chr3_1:3471571-3471590 Msa0344690:intron 15.0%
!!! TTGATTTGAAGTATTAAATT+TGG - chr3_1:3471616-3471635 None:intergenic 15.0%
!!! TTTTATTAAGGAAAAAACTT+AGG + chr3_1:3473076-3473095 Msa0344690:intron 15.0%
!! TTAATAAAAGGATAAAACTT+AGG - chr3_1:3473246-3473265 None:intergenic 15.0%
!! TTTAAATCACCAATTAATAA+AGG - chr3_1:3473453-3473472 None:intergenic 15.0%
!!! TATTAATTGGTGATTTAAAT+AGG + chr3_1:3473454-3473473 Msa0344690:intron 15.0%
!!! TTAGTTATTTTTATTGTACT+AGG + chr3_1:3473710-3473729 Msa0344690:intron 15.0%
!!! TAGTTATTTTTATTGTACTA+GGG + chr3_1:3473711-3473730 Msa0344690:intron 15.0%
!!! TATTTTCTTGTTTATATATG+TGG + chr3_1:3473911-3473930 Msa0344690:intron 15.0%
!!! ATTTTCTTGTTTATATATGT+GGG + chr3_1:3473912-3473931 Msa0344690:intron 15.0%
!! AAAAATAGAAATATTGCATT+GGG - chr3_1:3474052-3474071 None:intergenic 15.0%
!! TAAAAATAGAAATATTGCAT+TGG - chr3_1:3474053-3474072 None:intergenic 15.0%
!! AAAATGAATGAATGAATCTA+CGG - chr3_1:3468516-3468535 None:intergenic 20.0%
!!! TTTAGCTATTATTTTTAGAC+TGG + chr3_1:3469216-3469235 Msa0344690:intron 20.0%
!!! GACCTTTAAATTGTTTTTTA+TGG - chr3_1:3469315-3469334 None:intergenic 20.0%
!!! TTGTTTTTCATCATAGTTTA+AGG + chr3_1:3469415-3469434 Msa0344690:intron 20.0%
!! TATTAAAATCAACTAGACTA+TGG - chr3_1:3469459-3469478 None:intergenic 20.0%
!!! CTAGTTGATTTTAATAGTTT+AGG + chr3_1:3469463-3469482 Msa0344690:intron 20.0%
!! TATTGTAAAGAAGTTTAACA+CGG + chr3_1:3469632-3469651 Msa0344690:intron 20.0%
!!! AGAAAGCCTTTAAAATTTAA+AGG + chr3_1:3470196-3470215 Msa0344690:intron 20.0%
!! GAGACTATAAAATTATAAAG+GGG - chr3_1:3470282-3470301 None:intergenic 20.0%
!! GGAGACTATAAAATTATAAA+GGG - chr3_1:3470283-3470302 None:intergenic 20.0%
!! CATTTGGTTAAAATTTGATT+GGG - chr3_1:3470304-3470323 None:intergenic 20.0%
!! ACATTTGGTTAAAATTTGAT+TGG - chr3_1:3470305-3470324 None:intergenic 20.0%
!!! TAATTCAATAACCATGTTTT+AGG + chr3_1:3470410-3470429 Msa0344690:intron 20.0%
!! ACTATCTAATTACTAAAACA+TGG - chr3_1:3470934-3470953 None:intergenic 20.0%
!! ATATTTATGTTATTGCCAAA+AGG + chr3_1:3470979-3470998 Msa0344690:intron 20.0%
!! AACATGAATGAATTATGAAT+TGG + chr3_1:3471015-3471034 Msa0344690:intron 20.0%
!! GAGAAAATATAAATACTTGT+CGG + chr3_1:3471335-3471354 Msa0344690:intron 20.0%
!!! CACATAATTTTAAAATTAGG+GGG + chr3_1:3471572-3471591 Msa0344690:intron 20.0%
!!! ACATAATTTTAAAATTAGGG+GGG + chr3_1:3471573-3471592 Msa0344690:intron 20.0%
!!! AAATCAATTTTGTCAAGATT+GGG + chr3_1:3471629-3471648 Msa0344690:intron 20.0%
!! TAATATGTAAAATTGCAACT+AGG + chr3_1:3471687-3471706 Msa0344690:intron 20.0%
!! ACAATCATACTATTTGTAAA+TGG - chr3_1:3471839-3471858 None:intergenic 20.0%
!!! TTATAAAGAGGCTTTTATTA+AGG + chr3_1:3473064-3473083 Msa0344690:intron 20.0%
!!! AACAAACTTTGAGAAAATTA+TGG - chr3_1:3473163-3473182 None:intergenic 20.0%
!! AAAAATAGCCCAATATATTT+GGG - chr3_1:3473612-3473631 None:intergenic 20.0%
!! AAATACATATGTAACTGAAT+TGG - chr3_1:3474364-3474383 None:intergenic 20.0%
!!! TTATGTTCTGAAAGAAAAAA+AGG + chr3_1:3474645-3474664 Msa0344690:three_prime_UTR 20.0%
!! CTAATTATCTTTATTCCATA+CGG + chr3_1:3474692-3474711 Msa0344690:three_prime_UTR 20.0%
!! TAATTATCTTTATTCCATAC+GGG + chr3_1:3474693-3474712 Msa0344690:three_prime_UTR 20.0%
!!! ACTTATCAGTGATATTTTTT+TGG - chr3_1:3474852-3474871 None:intergenic 20.0%
! ATGAAATCAATGTGATTTCT+CGG - chr3_1:3468223-3468242 None:intergenic 25.0%
! TTCATTTCATTCAACTAAGA+CGG + chr3_1:3468294-3468313 Msa0344690:five_prime_UTR 25.0%
! AAATTATAGAATGAAAGGTG+AGG - chr3_1:3468645-3468664 None:intergenic 25.0%
! ATGAAAATTTGTGAGAATGA+GGG - chr3_1:3468713-3468732 None:intergenic 25.0%
!! TTTTTGTATATGCTATAAGC+TGG + chr3_1:3468897-3468916 Msa0344690:intron 25.0%
! TTTCTAAGCTATATTCGAAT+TGG + chr3_1:3468921-3468940 Msa0344690:intron 25.0%
!!! TAAGTTTTGTGAGATTGTTT+AGG - chr3_1:3469012-3469031 None:intergenic 25.0%
! AATCTAAACAAGAACTTAGA+CGG + chr3_1:3469058-3469077 Msa0344690:intron 25.0%
! AAAATAGTTGGATGAGATAA+TGG - chr3_1:3469373-3469392 None:intergenic 25.0%
!! CAACAAATTTTGTTAACAGA+GGG - chr3_1:3469398-3469417 None:intergenic 25.0%
!! ACAACAAATTTTGTTAACAG+AGG - chr3_1:3469399-3469418 None:intergenic 25.0%
! TCTTTACAATAAATCACTTC+AGG - chr3_1:3469623-3469642 None:intergenic 25.0%
!! TTTTATGCTTAATTGCATAG+TGG + chr3_1:3469901-3469920 Msa0344690:intron 25.0%
! CAGCGTAAAAATAAAATCTA+GGG + chr3_1:3470008-3470027 Msa0344690:intron 25.0%
! AGCGTAAAAATAAAATCTAG+GGG + chr3_1:3470009-3470028 Msa0344690:intron 25.0%
! GTTCAAAATGCAAAATATAG+CGG + chr3_1:3470031-3470050 Msa0344690:intron 25.0%
!!! AGCGGTATTTTGTATTTTTT+AGG + chr3_1:3470049-3470068 Msa0344690:intron 25.0%
!!! TTTTGTATTTTTTAGGTTCG+AGG + chr3_1:3470056-3470075 Msa0344690:intron 25.0%
!!! TTTGTATTTTTTAGGTTCGA+GGG + chr3_1:3470057-3470076 Msa0344690:intron 25.0%
! ATTATAAAGGGGATAAACTA+GGG - chr3_1:3470271-3470290 None:intergenic 25.0%
! AATTATAAAGGGGATAAACT+AGG - chr3_1:3470272-3470291 None:intergenic 25.0%
! GGGAGACTATAAAATTATAA+AGG - chr3_1:3470284-3470303 None:intergenic 25.0%
! TTAACCAAATGTTAACCATA+AGG + chr3_1:3470313-3470332 Msa0344690:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr3_1:3470660-3470679 Msa0344690:intron 25.0%
! AACCATTAGAAAAGATTTAG+AGG + chr3_1:3470802-3470821 Msa0344690:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG - chr3_1:3470842-3470861 None:intergenic 25.0%
!! TTCAAAAGTTCTTATCCTTT+TGG - chr3_1:3470997-3471016 None:intergenic 25.0%
! TATTTGGTCAAAATCTGATT+GGG + chr3_1:3471492-3471511 Msa0344690:intron 25.0%
!! CAAATCAATTTTGTCAAGAT+TGG + chr3_1:3471628-3471647 Msa0344690:intron 25.0%
! TACTATTTGTAAATGGAGAA+GGG - chr3_1:3471832-3471851 None:intergenic 25.0%
! ATACTATTTGTAAATGGAGA+AGG - chr3_1:3471833-3471852 None:intergenic 25.0%
! TGACATTTATATCTATTCCT+TGG - chr3_1:3472051-3472070 None:intergenic 25.0%
! GAATACCAACTTAGATAATA+AGG - chr3_1:3472878-3472897 None:intergenic 25.0%
! AAACTTTGGTACTTATAAAG+AGG + chr3_1:3473052-3473071 Msa0344690:intron 25.0%
! TTGAGAAAATTATGGATTTG+AGG - chr3_1:3473155-3473174 None:intergenic 25.0%
! AAACTTAGGTACAATTCTTT+AGG - chr3_1:3473232-3473251 None:intergenic 25.0%
! TAGCAAGACACATTAATAAA+AGG - chr3_1:3473258-3473277 None:intergenic 25.0%
!! AGAAATATAGTATTGGGAAA+TGG - chr3_1:3473383-3473402 None:intergenic 25.0%
! TAGCATTCTCCTTTATTAAT+TGG + chr3_1:3473441-3473460 Msa0344690:intron 25.0%
! CAAAAATAGCCCAATATATT+TGG - chr3_1:3473613-3473632 None:intergenic 25.0%
! TAAAAAAAATGTCAAGGTCA+TGG - chr3_1:3473650-3473669 None:intergenic 25.0%
! AGACTGTAAAAAAAATGTCA+AGG - chr3_1:3473656-3473675 None:intergenic 25.0%
! TTAAGGAAATCAAAAGTAGT+AGG + chr3_1:3473963-3473982 Msa0344690:intron 25.0%
!! CGGATCAGATTAAAATTTTA+TGG + chr3_1:3474243-3474262 Msa0344690:intron 25.0%
!! GATTAAAATTTTATGGCCTA+TGG + chr3_1:3474250-3474269 Msa0344690:intron 25.0%
! AGCACAAAATATACTTTGTT+AGG - chr3_1:3474405-3474424 None:intergenic 25.0%
! TGAATAGATGATGCTATATT+TGG + chr3_1:3474450-3474469 Msa0344690:exon 25.0%
! CAAAAAGAATTCTTATTGCT+GGG - chr3_1:3474746-3474765 None:intergenic 25.0%
! CGATGTTTGAATTAATAGTA+TGG + chr3_1:3474785-3474804 Msa0344690:three_prime_UTR 25.0%
TGAAATCAATGTGATTTCTC+GGG - chr3_1:3468222-3468241 None:intergenic 30.0%
!!! TGTTCTTTATTTTCACCCAT+CGG - chr3_1:3468350-3468369 None:intergenic 30.0%
GATGAAAATTTGTGAGAATG+AGG - chr3_1:3468714-3468733 None:intergenic 30.0%
TATAGCACAATCACTTATCA+TGG + chr3_1:3468799-3468818 Msa0344690:intron 30.0%
! AGCTAACTGTAATTTTCACA+AGG - chr3_1:3468974-3468993 None:intergenic 30.0%
GCTTATTTGAACTTATCTAC+TGG - chr3_1:3469037-3469056 None:intergenic 30.0%
! GTCTAAGTTCTTGTTTAGAT+TGG - chr3_1:3469059-3469078 None:intergenic 30.0%
! ACTTGTCTAGAATATAGAGT+CGG - chr3_1:3469147-3469166 None:intergenic 30.0%
TATATTCTAGACAAGTGAGT+GGG + chr3_1:3469151-3469170 Msa0344690:intron 30.0%
! TTTTTAGACTGGAGTATAGT+TGG + chr3_1:3469227-3469246 Msa0344690:intron 30.0%
! TTGGATGAGATAATGGTTTA+AGG - chr3_1:3469366-3469385 None:intergenic 30.0%
TGATGAGACAGTGATAATTT+AGG + chr3_1:3469494-3469513 Msa0344690:intron 30.0%
GATGAGACAGTGATAATTTA+GGG + chr3_1:3469495-3469514 Msa0344690:intron 30.0%
GGATCAAATTGACTGTTTAT+TGG + chr3_1:3469516-3469535 Msa0344690:intron 30.0%
AAATGCCTAGAATGAGTATT+TGG - chr3_1:3469686-3469705 None:intergenic 30.0%
TACGCATACTTAAACCAAAA+TGG + chr3_1:3469711-3469730 Msa0344690:intron 30.0%
TCAAATAATTCCACAGACAT+TGG + chr3_1:3469843-3469862 Msa0344690:intron 30.0%
!!! GTTCAAACTTTTGAGTTCTT+GGG + chr3_1:3469981-3470000 Msa0344690:intron 30.0%
GCAGCGTAAAAATAAAATCT+AGG + chr3_1:3470007-3470026 Msa0344690:intron 30.0%
TACAAATCATGTTACCATCA+GGG - chr3_1:3470117-3470136 None:intergenic 30.0%
TTACAAATCATGTTACCATC+AGG - chr3_1:3470118-3470137 None:intergenic 30.0%
! CATGTGTACATGAAATTTTG+TGG - chr3_1:3470154-3470173 None:intergenic 30.0%
TTATAAAGGGGATAAACTAG+GGG - chr3_1:3470270-3470289 None:intergenic 30.0%
AACACCTTATGGTTAACATT+TGG - chr3_1:3470320-3470339 None:intergenic 30.0%
CTTATCTCTATTGAACATGT+TGG + chr3_1:3470365-3470384 Msa0344690:intron 30.0%
!! ATTGAACATGTTGGTTTGAA+AGG + chr3_1:3470374-3470393 Msa0344690:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr3_1:3470656-3470675 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG - chr3_1:3470726-3470745 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + chr3_1:3470727-3470746 Msa0344690:intron 30.0%
! TTTTCTAATGGTTTCTCGAA+AGG - chr3_1:3470795-3470814 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - chr3_1:3470807-3470826 None:intergenic 30.0%
! TGGTTTTTGATAGAACACTA+TGG + chr3_1:3470846-3470865 Msa0344690:intron 30.0%
! TTTTATAGGATCGTGAATCT+TGG + chr3_1:3471085-3471104 Msa0344690:intron 30.0%
! GCGCAAAAGTATAAAAGTAT+AGG - chr3_1:3471112-3471131 None:intergenic 30.0%
!! CAAACGTTTCTAGTTAACAT+TGG - chr3_1:3471223-3471242 None:intergenic 30.0%
CAATGTTAACTAGAAACGTT+TGG + chr3_1:3471221-3471240 Msa0344690:intron 30.0%
TCATAACACAACTTGAGATT+CGG - chr3_1:3471317-3471336 None:intergenic 30.0%
GTTGCAAAATGAAGAAATCA+TGG + chr3_1:3471453-3471472 Msa0344690:intron 30.0%
AAAATGAAGAAATCATGGAG+AGG + chr3_1:3471458-3471477 Msa0344690:intron 30.0%
AAATGAAGAAATCATGGAGA+GGG + chr3_1:3471459-3471478 Msa0344690:intron 30.0%
GTATTTGGTCAAAATCTGAT+TGG + chr3_1:3471491-3471510 Msa0344690:intron 30.0%
ATTTGGTCAAAATCTGATTG+GGG + chr3_1:3471493-3471512 Msa0344690:intron 30.0%
!! ATTTGGCTTAATTCCAGTTT+TGG - chr3_1:3471599-3471618 None:intergenic 30.0%
!!! TGTATAACTTTTCAAGTTGG+TGG - chr3_1:3471785-3471804 None:intergenic 30.0%
!!! ACGTGTATAACTTTTCAAGT+TGG - chr3_1:3471788-3471807 None:intergenic 30.0%
!! TAAAGTTAGTCTTGATGATC+AGG - chr3_1:3471880-3471899 None:intergenic 30.0%
AGTCAATTGTTGGATATAGA+TGG - chr3_1:3471921-3471940 None:intergenic 30.0%
! TAAATTCCATTGCTCTGAAT+AGG + chr3_1:3471965-3471984 Msa0344690:intron 30.0%
AGAAAGGTTATGAGTGAATT+GGG + chr3_1:3472135-3472154 Msa0344690:intron 30.0%
GTAATAGGAAGGTTAAGAAT+AGG + chr3_1:3472172-3472191 Msa0344690:intron 30.0%
TAATTTAGACTATGTACCTG+TGG + chr3_1:3472438-3472457 Msa0344690:intron 30.0%
ACATTGAGACAATTTAAGTG+TGG + chr3_1:3472469-3472488 Msa0344690:intron 30.0%
TAATTTAGACTATGTACCTG+TGG + chr3_1:3472438-3472457 Msa0344690:intron 30.0%
ATACAATTAAACCAAAGACG+TGG + chr3_1:3472590-3472609 Msa0344690:intron 30.0%
TACAATTAAACCAAAGACGT+GGG + chr3_1:3472591-3472610 Msa0344690:intron 30.0%
ATCAAAGAGTTACTCTTGAT+AGG - chr3_1:3472659-3472678 None:intergenic 30.0%
!!! GTGTAGTTTTTTGCACATTT+GGG - chr3_1:3472799-3472818 None:intergenic 30.0%
! TAAGTTCTGATAAAAACGCT+CGG - chr3_1:3472821-3472840 None:intergenic 30.0%
AATCTTATCACGAGTATCAA+AGG + chr3_1:3472849-3472868 Msa0344690:intron 30.0%
GGATACCTTATTATCTAAGT+TGG + chr3_1:3472870-3472889 Msa0344690:intron 30.0%
ATATGCAGACTTTGCAAAAT+AGG - chr3_1:3472942-3472961 None:intergenic 30.0%
TTATGGATTTGAGGAAATCA+TGG - chr3_1:3473146-3473165 None:intergenic 30.0%
!! CTCAAAGTTTGTTATATCCA+AGG + chr3_1:3473170-3473189 Msa0344690:intron 30.0%
! AATTAAAAGTACGTCTTCCT+TGG - chr3_1:3473190-3473209 None:intergenic 30.0%
! AGCTTTTCTCCCAAATATAT+TGG + chr3_1:3473600-3473619 Msa0344690:intron 30.0%
! GCTTTTCTCCCAAATATATT+GGG + chr3_1:3473601-3473620 Msa0344690:intron 30.0%
ACCTCGCCAAATTATAATTA+TGG + chr3_1:3473680-3473699 Msa0344690:intron 30.0%
TCCATAATTATAATTTGGCG+AGG - chr3_1:3473684-3473703 None:intergenic 30.0%
TTCCTTAACAAGTACACTTA+GGG - chr3_1:3473951-3473970 None:intergenic 30.0%
TTTCCTTAACAAGTACACTT+AGG - chr3_1:3473952-3473971 None:intergenic 30.0%
ACACACACTCCTATATATAT+AGG + chr3_1:3474142-3474161 Msa0344690:intron 30.0%
CACACACTCCTATATATATA+GGG + chr3_1:3474143-3474162 Msa0344690:intron 30.0%
ACACACTCCTATATATATAG+GGG + chr3_1:3474144-3474163 Msa0344690:intron 30.0%
GATACATCCCCTATATATAT+AGG - chr3_1:3474154-3474173 None:intergenic 30.0%
TATTTATCAAGAGAGTTGAG+AGG + chr3_1:3474190-3474209 Msa0344690:intron 30.0%
AGCCATTAGATCAAATTGTA+CGG + chr3_1:3474223-3474242 Msa0344690:intron 30.0%
ATCCGTACAATTTGATCTAA+TGG - chr3_1:3474228-3474247 None:intergenic 30.0%
TAAAGGAACAATCAATAGTC+AGG - chr3_1:3474510-3474529 None:intergenic 30.0%
CAATAGCTATAACTGAGTAA+AGG - chr3_1:3474527-3474546 None:intergenic 30.0%
TAAATTAACAATACTGCCCA+TGG + chr3_1:3474569-3474588 Msa0344690:three_prime_UTR 30.0%
GCTTGGAAATAAATTTCCAT+GGG - chr3_1:3474588-3474607 None:intergenic 30.0%
AGCTTGGAAATAAATTTCCA+TGG - chr3_1:3474589-3474608 None:intergenic 30.0%
TAAACATAGTGCAGAATTAC+AGG - chr3_1:3474628-3474647 None:intergenic 30.0%
!!! GGGTGTTTTAAAAGTTGAAT+TGG + chr3_1:3474713-3474732 Msa0344690:three_prime_UTR 30.0%
GCAAAAAGAATTCTTATTGC+TGG - chr3_1:3474747-3474766 None:intergenic 30.0%
ATCGTATGCAAAATACATGT+AGG - chr3_1:3474769-3474788 None:intergenic 30.0%
ATTTCATTCAACTAAGACGG+TGG + chr3_1:3468297-3468316 Msa0344690:five_prime_UTR 35.0%
!! TTTATTTTCACCCATCGGAA+CGG - chr3_1:3468345-3468364 None:intergenic 35.0%
! TCTAAAGCAAAGCAAAGCAA+AGG - chr3_1:3468578-3468597 None:intergenic 35.0%
TTATAGAATGAAAGGTGAGG+AGG - chr3_1:3468642-3468661 None:intergenic 35.0%
AAATTTGTGAGAATGAGGGA+TGG - chr3_1:3468709-3468728 None:intergenic 35.0%
CTATATTCTAGACAAGTGAG+TGG + chr3_1:3469150-3469169 Msa0344690:intron 35.0%
CGTAGAATAAGCAGTCAATT+TGG + chr3_1:3469252-3469271 Msa0344690:intron 35.0%
TAACAGAGGGACAAAATAGT+TGG - chr3_1:3469385-3469404 None:intergenic 35.0%
! ACCAAAATGGTTGCCTTATT+TGG + chr3_1:3469724-3469743 Msa0344690:intron 35.0%
! ACCAAATAAGGCAACCATTT+TGG - chr3_1:3469728-3469747 None:intergenic 35.0%
AAATGGGTGTGAACCAAATA+AGG - chr3_1:3469740-3469759 None:intergenic 35.0%
! TTATTTGGTTCACACCCATT+TGG + chr3_1:3469739-3469758 Msa0344690:intron 35.0%
TTCATGGTGAAGAGTCATTT+GGG - chr3_1:3469804-3469823 None:intergenic 35.0%
TTTCATGGTGAAGAGTCATT+TGG - chr3_1:3469805-3469824 None:intergenic 35.0%
!! AGTGGAAGTATCATAAAACG+TGG + chr3_1:3469919-3469938 Msa0344690:intron 35.0%
AAACGTGGAATCATAATCAG+TGG + chr3_1:3469934-3469953 Msa0344690:intron 35.0%
!!! GGTTCAAACTTTTGAGTTCT+TGG + chr3_1:3469980-3469999 Msa0344690:intron 35.0%
ACAAATCATGTTACCATCAG+GGG - chr3_1:3470116-3470135 None:intergenic 35.0%
TAAAGGCTTAATTGCAGTGT+TGG + chr3_1:3470213-3470232 Msa0344690:intron 35.0%
AAACCGCACATTAAGAACTA+GGG - chr3_1:3470242-3470261 None:intergenic 35.0%
AAAACCGCACATTAAGAACT+AGG - chr3_1:3470243-3470262 None:intergenic 35.0%
! TAGTTCTTAATGTGCGGTTT+TGG + chr3_1:3470242-3470261 Msa0344690:intron 35.0%
TATAAAGGGGATAAACTAGG+GGG - chr3_1:3470269-3470288 None:intergenic 35.0%
AGCACAAAACACCTAAAACA+TGG - chr3_1:3470424-3470443 None:intergenic 35.0%
! AAAGTACCACTTAAGCTGAA+AGG + chr3_1:3470449-3470468 Msa0344690:intron 35.0%
AACTTTCCTTTCAGCTTAAG+TGG - chr3_1:3470458-3470477 None:intergenic 35.0%
AGCTGAAAGGAAAGTTCTAT+CGG + chr3_1:3470462-3470481 Msa0344690:intron 35.0%
AGACTAGACAAGATAGGATT+AGG + chr3_1:3470597-3470616 Msa0344690:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr3_1:3470649-3470668 Msa0344690:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr3_1:3470669-3470688 Msa0344690:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr3_1:3470674-3470693 Msa0344690:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG + chr3_1:3470730-3470749 Msa0344690:intron 35.0%
! GTTTCTCGAAAGGTTTTCTT+AGG - chr3_1:3470785-3470804 None:intergenic 35.0%
AGATTTAGAGGTCAATGAGT+TGG + chr3_1:3470814-3470833 Msa0344690:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr3_1:3470826-3470845 Msa0344690:intron 35.0%
CTACCTAATAATAAGAGACG+AGG + chr3_1:3471054-3471073 Msa0344690:intron 35.0%
GATCCTCGTCTCTTATTATT+AGG - chr3_1:3471060-3471079 None:intergenic 35.0%
! ACGAGGATCAGTTCTTTTAT+AGG + chr3_1:3471071-3471090 Msa0344690:intron 35.0%
AGAAACGTTTGGACATGATT+TGG + chr3_1:3471232-3471251 Msa0344690:intron 35.0%
GAAACGTTTGGACATGATTT+GGG + chr3_1:3471233-3471252 Msa0344690:intron 35.0%
ATGAATCGTTTGAATGTGCA+TGG + chr3_1:3471385-3471404 Msa0344690:intron 35.0%
ATACGTCGTGAACTTTAGAT+GGG + chr3_1:3471411-3471430 Msa0344690:intron 35.0%
TTTGGTCAAAATCTGATTGG+GGG + chr3_1:3471494-3471513 Msa0344690:intron 35.0%
ATTGGGATCTTTACTACGAT+CGG + chr3_1:3471646-3471665 Msa0344690:intron 35.0%
CAAATCCTAGGCAATTACTT+AGG - chr3_1:3471727-3471746 None:intergenic 35.0%
CTAAGTAATTGCCTAGGATT+TGG + chr3_1:3471725-3471744 Msa0344690:intron 35.0%
TGTTGGATATAGATGGATCA+TGG - chr3_1:3471914-3471933 None:intergenic 35.0%
! CACTCTAAGAAGTCAATTGT+TGG - chr3_1:3471931-3471950 None:intergenic 35.0%
! CAACAATTGACTTCTTAGAG+TGG + chr3_1:3471929-3471948 Msa0344690:intron 35.0%
ATATGTCCTATTCAGAGCAA+TGG - chr3_1:3471974-3471993 None:intergenic 35.0%
AAGCTATTTGCCATCAAAGA+TGG - chr3_1:3472018-3472037 None:intergenic 35.0%
ATATCTATTCCTTGGACAGT+AGG - chr3_1:3472043-3472062 None:intergenic 35.0%
TAGCAACATGCAAATATGAC+AGG + chr3_1:3472083-3472102 Msa0344690:intron 35.0%
AAGTAACATAACGAGGAGAA+AGG + chr3_1:3472119-3472138 Msa0344690:intron 35.0%
GAGAAAGGTTATGAGTGAAT+TGG + chr3_1:3472134-3472153 Msa0344690:intron 35.0%
GAAGGTTAAGAATAGGAAGT+CGG + chr3_1:3472179-3472198 Msa0344690:intron 35.0%
AAGGTTAAGAATAGGAAGTC+GGG + chr3_1:3472180-3472199 Msa0344690:intron 35.0%
GCATTTGCAATCAATGTAAG+TGG + chr3_1:3472235-3472254 Msa0344690:intron 35.0%
TTTGCAATCAATGTAAGTGG+AGG + chr3_1:3472238-3472257 Msa0344690:intron 35.0%
TAGACTTGCAATGCACATAT+AGG + chr3_1:3472295-3472314 Msa0344690:intron 35.0%
! GATCAAGATAGTCTTAAGTG+TGG + chr3_1:3472389-3472408 Msa0344690:intron 35.0%
! AAGATAGTCTTAAGTGTGGA+AGG + chr3_1:3472393-3472412 Msa0344690:intron 35.0%
TGAGACAATTTAAGTGTGGA+AGG + chr3_1:3472473-3472492 Msa0344690:intron 35.0%
TCAAGGAATGAAAAACCTGA+AGG + chr3_1:3472616-3472635 Msa0344690:intron 35.0%
CAAGGAATGAAAAACCTGAA+GGG + chr3_1:3472617-3472636 Msa0344690:intron 35.0%
AAGGAATGAAAAACCTGAAG+GGG + chr3_1:3472618-3472637 Msa0344690:intron 35.0%
GATTACCTATTAGACAATCC+TGG + chr3_1:3472676-3472695 Msa0344690:intron 35.0%
TCTATGCAATTCTATCAGTC+TGG - chr3_1:3472705-3472724 None:intergenic 35.0%
ACACACACACTATTGAGATT+TGG + chr3_1:3472734-3472753 Msa0344690:intron 35.0%
TGAGCAAGTCTACAACATAA+TGG + chr3_1:3472765-3472784 Msa0344690:intron 35.0%
!!! GGTGTAGTTTTTTGCACATT+TGG - chr3_1:3472800-3472819 None:intergenic 35.0%
!! AACCATACGAAAAGCACTTA+AGG - chr3_1:3473109-3473128 None:intergenic 35.0%
! TTCTTTAGGTGCTTTTCGTA+TGG - chr3_1:3473218-3473237 None:intergenic 35.0%
!!! CAATGCAAACATGCTACTTT+TGG - chr3_1:3473312-3473331 None:intergenic 35.0%
CAAAAGTAGCATGTTTGCAT+TGG + chr3_1:3473310-3473329 Msa0344690:intron 35.0%
! TACCCTAAGTGTACTTGTTA+AGG + chr3_1:3473946-3473965 Msa0344690:intron 35.0%
CAAAAGTAGTAGGTTTGCAT+TGG + chr3_1:3473973-3473992 Msa0344690:intron 35.0%
ATGATGCTATATTTGGATCC+TGG + chr3_1:3474457-3474476 Msa0344690:three_prime_UTR 35.0%
AGAACAAAAGGATAACAGCT+TGG - chr3_1:3474605-3474624 None:intergenic 35.0%
CAGAATTACAGGAGAACAAA+AGG - chr3_1:3474617-3474636 None:intergenic 35.0%
!!! CAACTTTTAAAACACCCGTA+TGG - chr3_1:3474710-3474729 None:intergenic 35.0%
ATCAATGTGATTTCTCGGGT+CGG - chr3_1:3468218-3468237 None:intergenic 40.0%
CAAAAGAGGAGTAAACGAAG+CGG - chr3_1:3468436-3468455 None:intergenic 40.0%
! TTCGTTTACTCCTCTTTTGC+CGG + chr3_1:3468437-3468456 Msa0344690:CDS 40.0%
CTCTTGCATGAATGACTGTT+TGG + chr3_1:3468755-3468774 Msa0344690:intron 40.0%
ACAAGAACTTAGACGGTCAA+TGG + chr3_1:3469065-3469084 Msa0344690:intron 40.0%
AGAATATAGAGTCGGCTACA+TGG - chr3_1:3469139-3469158 None:intergenic 40.0%
! TTCATGTTTGTTGCTCACTG+TGG - chr3_1:3469585-3469604 None:intergenic 40.0%
GTCCTCCAAATACTCATTCT+AGG + chr3_1:3469678-3469697 Msa0344690:intron 40.0%
TGCCTAGAATGAGTATTTGG+AGG - chr3_1:3469683-3469702 None:intergenic 40.0%
! ACCCATTTGGAACTATGTTC+TGG + chr3_1:3469752-3469771 Msa0344690:intron 40.0%
GCCAGAACATAGTTCCAAAT+GGG - chr3_1:3469756-3469775 None:intergenic 40.0%
TGCCAGAACATAGTTCCAAA+TGG - chr3_1:3469757-3469776 None:intergenic 40.0%
TCATGGTGAAGAGTCATTTG+GGG - chr3_1:3469803-3469822 None:intergenic 40.0%
TTCTGCATGCTCAGATTTCA+TGG - chr3_1:3469820-3469839 None:intergenic 40.0%
AGAAAAGGAACCAATGTCTG+TGG - chr3_1:3469856-3469875 None:intergenic 40.0%
!! TTCCTTTTCTAGCACACAAG+TGG + chr3_1:3469866-3469885 Msa0344690:intron 40.0%
AACCACTTGTGTGCTAGAAA+AGG - chr3_1:3469871-3469890 None:intergenic 40.0%
CTCAAAAGTTTGAACCCCTT+GGG - chr3_1:3469976-3469995 None:intergenic 40.0%
ACTCAAAAGTTTGAACCCCT+TGG - chr3_1:3469977-3469996 None:intergenic 40.0%
TTCAATTGAACCCCCTCAAA+AGG + chr3_1:3470080-3470099 Msa0344690:intron 40.0%
TCAATTGAACCCCCTCAAAA+GGG + chr3_1:3470081-3470100 Msa0344690:intron 40.0%
AACCGCACATTAAGAACTAG+GGG - chr3_1:3470241-3470260 None:intergenic 40.0%
ATAAAGGGGATAAACTAGGG+GGG - chr3_1:3470268-3470287 None:intergenic 40.0%
AATGCAACGTCAACACCTTA+TGG - chr3_1:3470331-3470350 None:intergenic 40.0%
CACTTACTTTACTCTCGTGT+TGG - chr3_1:3470541-3470560 None:intergenic 40.0%
CGAGAGTAAAGTAAGTGTAG+CGG + chr3_1:3470544-3470563 Msa0344690:intron 40.0%
GTGGTAAGACTAGACAAGAT+AGG + chr3_1:3470591-3470610 Msa0344690:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG - chr3_1:3470717-3470736 None:intergenic 40.0%
TGACAAGTCATTGTAGCTAC+TGG - chr3_1:3471177-3471196 None:intergenic 40.0%
! GCTACAATGACTTGTCATTG+TGG + chr3_1:3471180-3471199 Msa0344690:intron 40.0%
CTAGTTAACATTGGCACATG+TGG - chr3_1:3471214-3471233 None:intergenic 40.0%
! GACATGATTTGGGTCTCAAA+TGG + chr3_1:3471243-3471262 Msa0344690:intron 40.0%
TTTGGGTCTCAAATGGTTAG+TGG + chr3_1:3471250-3471269 Msa0344690:intron 40.0%
GATACGTCGTGAACTTTAGA+TGG + chr3_1:3471410-3471429 Msa0344690:intron 40.0%
TACGTCGTGAACTTTAGATG+GGG + chr3_1:3471412-3471431 Msa0344690:intron 40.0%
TTGGGATCTTTACTACGATC+GGG + chr3_1:3471647-3471666 Msa0344690:intron 40.0%
TCCTACCTAAGTAATTGCCT+AGG + chr3_1:3471719-3471738 Msa0344690:intron 40.0%
TCCTAGGCAATTACTTAGGT+AGG - chr3_1:3471723-3471742 None:intergenic 40.0%
AGTAATTGCCTAGGATTTGG+AGG + chr3_1:3471728-3471747 Msa0344690:intron 40.0%
GTAATTGCCTAGGATTTGGA+GGG + chr3_1:3471729-3471748 Msa0344690:intron 40.0%
! CAATTGACTTCTTAGAGTGG+AGG + chr3_1:3471932-3471951 Msa0344690:intron 40.0%
TTCTTAGAGTGGAGGAACAA+GGG + chr3_1:3471940-3471959 Msa0344690:intron 40.0%
CTATTTGCCATCAAAGATGG+CGG - chr3_1:3472015-3472034 None:intergenic 40.0%
GAGCTCAAAGTAACATAACG+AGG + chr3_1:3472112-3472131 Msa0344690:intron 40.0%
GATTGCAAATGCAACACCTA+TGG - chr3_1:3472227-3472246 None:intergenic 40.0%
! ATCAATGTAAGTGGAGGCAT+AGG + chr3_1:3472244-3472263 Msa0344690:intron 40.0%
!! TCTTGAACCTAGGGTATTGT+TGG + chr3_1:3472328-3472347 Msa0344690:intron 40.0%
CTCAATGTCTTAGTTTCCAC+AGG - chr3_1:3472457-3472476 None:intergenic 40.0%
CTCAATGTCTTAGTTTCCAC+AGG - chr3_1:3472457-3472476 None:intergenic 40.0%
ACTTCTGTAATTTCCCCTTC+AGG - chr3_1:3472634-3472653 None:intergenic 40.0%
CACACACTATTGAGATTTGG+AGG + chr3_1:3472737-3472756 Msa0344690:intron 40.0%
! CTCCTTAAGTGCTTTTCGTA+TGG + chr3_1:3473104-3473123 Msa0344690:intron 40.0%
GAATGTTCTCGTCTGTTTGA+TGG + chr3_1:3473800-3473819 Msa0344690:CDS 40.0%
!! AATGCTAAAGAGTGCCCTTA+GGG - chr3_1:3474091-3474110 None:intergenic 40.0%
!! AAATGCTAAAGAGTGCCCTT+AGG - chr3_1:3474092-3474111 None:intergenic 40.0%
! TATGGCCTATGGTAGTGAAT+AGG + chr3_1:3474261-3474280 Msa0344690:intron 40.0%
ATGCTCCTATTCACTACCAT+AGG - chr3_1:3474269-3474288 None:intergenic 40.0%
!! CTTTTGTTTCCAGATTGTGC+AGG + chr3_1:3474423-3474442 Msa0344690:intron 40.0%
ATTCAGAATCCTGCACAATC+TGG - chr3_1:3474435-3474454 None:intergenic 40.0%
TATATTTGGATCCTGGTTCC+TGG + chr3_1:3474464-3474483 Msa0344690:three_prime_UTR 40.0%
CGGGTTGTGTTTAAACCACA+AGG - chr3_1:3468193-3468212 None:intergenic 45.0%
TCAATGTGATTTCTCGGGTC+GGG - chr3_1:3468217-3468236 None:intergenic 45.0%
!! GCATCGACGTCATACTTTTG+AGG - chr3_1:3468380-3468399 None:intergenic 45.0%
AGTATGACGTCGATGCCAAA+TGG + chr3_1:3468384-3468403 Msa0344690:CDS 45.0%
GTATGACGTCGATGCCAAAT+GGG + chr3_1:3468385-3468404 Msa0344690:CDS 45.0%
!! GAAGGTACTGACTGAAAAGG+AGG - chr3_1:3468478-3468497 None:intergenic 45.0%
!! GGAGAAGGTACTGACTGAAA+AGG - chr3_1:3468481-3468500 None:intergenic 45.0%
AATCTACGGAGAGAGAGAGT+TGG - chr3_1:3468502-3468521 None:intergenic 45.0%
TAGACAAGTGAGTGGGAAAG+AGG + chr3_1:3469158-3469177 Msa0344690:intron 45.0%
AGGACATGTCAAACACAGCT+GGG - chr3_1:3469663-3469682 None:intergenic 45.0%
! TCAGTGGCGTATCTAGAATC+TGG + chr3_1:3469950-3469969 Msa0344690:intron 45.0%
! GTATCTAGAATCTGGCCCAA+GGG + chr3_1:3469958-3469977 Msa0344690:intron 45.0%
! TATCTAGAATCTGGCCCAAG+GGG + chr3_1:3469959-3469978 Msa0344690:intron 45.0%
AATCATGTTACCATCAGGGG+CGG - chr3_1:3470113-3470132 None:intergenic 45.0%
! TCCCCCTAGTTCTTAATGTG+CGG + chr3_1:3470236-3470255 Msa0344690:intron 45.0%
ACCGCACATTAAGAACTAGG+GGG - chr3_1:3470240-3470259 None:intergenic 45.0%
ACCGGCAATGTTGTATGGTA+CGG + chr3_1:3470496-3470515 Msa0344690:intron 45.0%
TCCGTACCATACAACATTGC+CGG - chr3_1:3470500-3470519 None:intergenic 45.0%
TGTTGTATGGTACGGAGTGT+TGG + chr3_1:3470504-3470523 Msa0344690:intron 45.0%
! GTTGTATGGTACGGAGTGTT+GGG + chr3_1:3470505-3470524 Msa0344690:intron 45.0%
! AAGTAAGTGTAGCGGAGATG+AGG + chr3_1:3470552-3470571 Msa0344690:intron 45.0%
TGACACCATTAGAGAGAGAG+TGG + chr3_1:3470622-3470641 Msa0344690:intron 45.0%
GACACCATTAGAGAGAGAGT+GGG + chr3_1:3470623-3470642 Msa0344690:intron 45.0%
ACACCATTAGAGAGAGAGTG+GGG + chr3_1:3470624-3470643 Msa0344690:intron 45.0%
CTTCTTACAACGGCATCTAC+GGG - chr3_1:3470716-3470735 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG + chr3_1:3470739-3470758 Msa0344690:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + chr3_1:3470749-3470768 Msa0344690:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr3_1:3470895-3470914 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr3_1:3470896-3470915 None:intergenic 45.0%
GGGGATGAAGTAGATCAATC+TGG + chr3_1:3471431-3471450 Msa0344690:intron 45.0%
AGAGGGAGAAGATGCGTATT+TGG + chr3_1:3471476-3471495 Msa0344690:intron 45.0%
AGGGAGGTAAAGTGTGTTGT+TGG + chr3_1:3471531-3471550 Msa0344690:intron 45.0%
! GGGAGGTAAAGTGTGTTGTT+GGG + chr3_1:3471532-3471551 Msa0344690:intron 45.0%
! GGAGGTAAAGTGTGTTGTTG+GGG + chr3_1:3471533-3471552 Msa0344690:intron 45.0%
! GAGGTAAAGTGTGTTGTTGG+GGG + chr3_1:3471534-3471553 Msa0344690:intron 45.0%
! AGGTAAAGTGTGTTGTTGGG+GGG + chr3_1:3471535-3471554 Msa0344690:intron 45.0%
AAAATTAGGGGGGCCAAAAC+TGG + chr3_1:3471583-3471602 Msa0344690:intron 45.0%
GATCTTTACTACGATCGGGA+GGG + chr3_1:3471651-3471670 Msa0344690:intron 45.0%
ATCTTTACTACGATCGGGAG+GGG + chr3_1:3471652-3471671 Msa0344690:intron 45.0%
CTTCTTAGAGTGGAGGAACA+AGG + chr3_1:3471939-3471958 Msa0344690:intron 45.0%
! TCAAAGATGGCGGCAAACAA+TGG - chr3_1:3472005-3472024 None:intergenic 45.0%
TTGTTTGCCGCCATCTTTGA+TGG + chr3_1:3472005-3472024 Msa0344690:intron 45.0%
ATAGCTTCACCTACTGTCCA+AGG + chr3_1:3472031-3472050 Msa0344690:intron 45.0%
TGCAATGCACATATAGGAGC+AGG + chr3_1:3472301-3472320 Msa0344690:intron 45.0%
GCAATGCACATATAGGAGCA+GGG + chr3_1:3472302-3472321 Msa0344690:intron 45.0%
!! TGAACCTAGGGTATTGTTGG+TGG + chr3_1:3472331-3472350 Msa0344690:intron 45.0%
GGCAACCAGGATTGTCTAAT+AGG - chr3_1:3472684-3472703 None:intergenic 45.0%
ATTCTATCAGTCTGGCAACC+AGG - chr3_1:3472697-3472716 None:intergenic 45.0%
TTGACCTGAGCTCGAAACTT+TGG + chr3_1:3473038-3473057 Msa0344690:intron 45.0%
AGTACCAAAGTTTCGAGCTC+AGG - chr3_1:3473045-3473064 None:intergenic 45.0%
TTCCTTAACCATTGCCCTGA+GGG - chr3_1:3473288-3473307 None:intergenic 45.0%
AATGCTAACCATTGCCCTTG+GGG - chr3_1:3473428-3473447 None:intergenic 45.0%
GAATGCTAACCATTGCCCTT+GGG - chr3_1:3473429-3473448 None:intergenic 45.0%
AGAATGCTAACCATTGCCCT+TGG - chr3_1:3473430-3473449 None:intergenic 45.0%
!! GCTTCTATTGCTTTTGGTGC+TGG + chr3_1:3473752-3473771 Msa0344690:CDS 45.0%
!!! TATTGCTTTTGGTGCTGGAG+TGG + chr3_1:3473757-3473776 Msa0344690:CDS 45.0%
!!! ATTGCTTTTGGTGCTGGAGT+GGG + chr3_1:3473758-3473777 Msa0344690:CDS 45.0%
AAGACAAATCCCACCTGAGT+AGG - chr3_1:3473890-3473909 None:intergenic 45.0%
TCGTCTTAACCAATGCCCTA+AGG + chr3_1:3474073-3474092 Msa0344690:intron 45.0%
CGTCTTAACCAATGCCCTAA+GGG + chr3_1:3474074-3474093 Msa0344690:intron 45.0%
TGTGTGTGTGTGTGTGTGTA+GGG - chr3_1:3474115-3474134 None:intergenic 45.0%
TAGGGGATGTATCAAGTGAG+AGG + chr3_1:3474161-3474180 Msa0344690:intron 45.0%
TGAGTGTCAACAGCCTAAGT+TGG + chr3_1:3474326-3474345 Msa0344690:intron 45.0%
!! GCCTAAGTTGGTGTAGTAAC+TGG + chr3_1:3474338-3474357 Msa0344690:intron 45.0%
GCCAGTTACTACACCAACTT+AGG - chr3_1:3474342-3474361 None:intergenic 45.0%
AATGCTCTGTTTCACTGTCC+AGG - chr3_1:3474485-3474504 None:intergenic 45.0%
!! AAAAAAATAAAAATCTAAAT+TGG + chr3_1:3472903-3472922 Msa0344690:intron 5.0%
! TTTCATTGAGAGCACGCACG+CGG + chr3_1:3468237-3468256 Msa0344690:five_prime_UTR 50.0%
ATCAAGGCAGGCATCCCATT+TGG - chr3_1:3468402-3468421 None:intergenic 50.0%
AAGAGGAGTAAACGAAGCGG+CGG - chr3_1:3468433-3468452 None:intergenic 50.0%
! TCCTCTTTTGCCGGTGCTTT+CGG + chr3_1:3468446-3468465 Msa0344690:CDS 50.0%
GAGGACATGTCAAACACAGC+TGG - chr3_1:3469664-3469683 None:intergenic 50.0%
TGTTCTGGCAAACAGATCGC+AGG + chr3_1:3469767-3469786 Msa0344690:intron 50.0%
! GGTGAAGAGTCATTTGGGGT+CGG - chr3_1:3469799-3469818 None:intergenic 50.0%
! CGTATCTAGAATCTGGCCCA+AGG + chr3_1:3469957-3469976 Msa0344690:intron 50.0%
CTATCGGACATCAGTCAGAC+CGG + chr3_1:3470478-3470497 Msa0344690:intron 50.0%
GTCAGACCGGCAATGTTGTA+TGG + chr3_1:3470491-3470510 Msa0344690:intron 50.0%
CACCATTAGAGAGAGAGTGG+GGG + chr3_1:3470625-3470644 Msa0344690:intron 50.0%
TACCCCCACTCTCTCTCTAA+TGG - chr3_1:3470630-3470649 None:intergenic 50.0%
GGTCGGCTACATGGATCAAA+TGG - chr3_1:3470874-3470893 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr3_1:3470891-3470910 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr3_1:3470897-3470916 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr3_1:3470894-3470913 Msa0344690:intron 50.0%
GGGTCTCAAATGGTTAGTGG+AGG + chr3_1:3471253-3471272 Msa0344690:intron 50.0%
! GGTAAAGTGTGTTGTTGGGG+GGG + chr3_1:3471536-3471555 Msa0344690:intron 50.0%
! GTAAAGTGTGTTGTTGGGGG+GGG + chr3_1:3471537-3471556 Msa0344690:intron 50.0%
! TAAAGTGTGTTGTTGGGGGG+GGG + chr3_1:3471538-3471557 Msa0344690:intron 50.0%
GGATCTTTACTACGATCGGG+AGG + chr3_1:3471650-3471669 Msa0344690:intron 50.0%
ATAGGAAGTCGGGTCAGTGT+TGG + chr3_1:3472190-3472209 Msa0344690:intron 50.0%
! GTTGGTGGAGGATAGTCCAT+AGG + chr3_1:3472208-3472227 Msa0344690:intron 50.0%
GCAAGTCTATCATCGCCAGT+TGG - chr3_1:3472284-3472303 None:intergenic 50.0%
AGCAGGGTTGTCTTGAACCT+AGG + chr3_1:3472318-3472337 Msa0344690:intron 50.0%
GCAGGGTTGTCTTGAACCTA+GGG + chr3_1:3472319-3472338 Msa0344690:intron 50.0%
CACACCACCAACAATACCCT+AGG - chr3_1:3472338-3472357 None:intergenic 50.0%
AACCAAAGACGTGGGTGTCA+AGG + chr3_1:3472599-3472618 Msa0344690:intron 50.0%
TTCCTTGACACCCACGTCTT+TGG - chr3_1:3472604-3472623 None:intergenic 50.0%
TTCGAGCTCAGGTCAAAGTC+AGG - chr3_1:3473034-3473053 None:intergenic 50.0%
TCTTGCTAACCATTGCCCTC+AGG + chr3_1:3473270-3473289 Msa0344690:intron 50.0%
CTTGCTAACCATTGCCCTCA+GGG + chr3_1:3473271-3473290 Msa0344690:intron 50.0%
CTTCCTTAACCATTGCCCTG+AGG - chr3_1:3473289-3473308 None:intergenic 50.0%
! CGCTGGGCTTCTATTGCTTT+TGG + chr3_1:3473746-3473765 Msa0344690:CDS 50.0%
!! TTTGGTGCTGGAGTGGGAAT+AGG + chr3_1:3473764-3473783 Msa0344690:CDS 50.0%
TTCGGTTGTGCAAGCTTTGC+TGG - chr3_1:3473830-3473849 None:intergenic 50.0%
AGCAAAGCTTGCACAACCGA+AGG + chr3_1:3473829-3473848 Msa0344690:CDS 50.0%
TGTGCTACCTCTGAGTCCTT+CGG - chr3_1:3473848-3473867 None:intergenic 50.0%
CTCAGAGGTAGCACAACCTA+AGG + chr3_1:3473853-3473872 Msa0344690:intron 50.0%
!! AAAGAGTGCCCTTAGGGCAT+TGG - chr3_1:3474085-3474104 None:intergenic 50.0%
GTGTGTGTGTGTGTGTGTGT+AGG - chr3_1:3474116-3474135 None:intergenic 50.0%
TGTTTCACTGTCCAGGAACC+AGG - chr3_1:3474478-3474497 None:intergenic 50.0%
TGTGATTTCTCGGGTCGGGT+CGG - chr3_1:3468213-3468232 None:intergenic 55.0%
TCCAACTCGTTCCGTTCCGA+TGG + chr3_1:3468331-3468350 Msa0344690:exon 55.0%
CCAACTCGTTCCGTTCCGAT+GGG + chr3_1:3468332-3468351 Msa0344690:exon 55.0%
! TCTTTTGCCGGTGCTTTCGG+CGG + chr3_1:3468449-3468468 Msa0344690:CDS 55.0%
CGGAGAGAGAGAGTTGGAGA+AGG - chr3_1:3468496-3468515 None:intergenic 55.0%
GGCAAACAGATCGCAGGTCT+TGG + chr3_1:3469773-3469792 Msa0344690:intron 55.0%
!! CGGAGATAGCCCTTTTGAGG+GGG - chr3_1:3470093-3470112 None:intergenic 55.0%
! GCGGAGATAGCCCTTTTGAG+GGG - chr3_1:3470094-3470113 None:intergenic 55.0%
! GGCGGAGATAGCCCTTTTGA+GGG - chr3_1:3470095-3470114 None:intergenic 55.0%
!! GTATGGTACGGAGTGTTGGG+CGG + chr3_1:3470508-3470527 Msa0344690:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr3_1:3470883-3470902 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr3_1:3470882-3470901 Msa0344690:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr3_1:3470883-3470902 Msa0344690:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr3_1:3470889-3470908 Msa0344690:intron 55.0%
TGGGGGACTGCGAAATCAGA+AGG + chr3_1:3471511-3471530 Msa0344690:intron 55.0%
GGGGGACTGCGAAATCAGAA+GGG + chr3_1:3471512-3471531 Msa0344690:intron 55.0%
GGACTGCGAAATCAGAAGGG+AGG + chr3_1:3471515-3471534 Msa0344690:intron 55.0%
! AAAGTGTGTTGTTGGGGGGG+GGG + chr3_1:3471539-3471558 Msa0344690:intron 55.0%
CTGCTAGCCCTCCAAATCCT+AGG - chr3_1:3471739-3471758 None:intergenic 55.0%
!! AGTGGAGGCATAGGTGCTGA+AGG + chr3_1:3472253-3472272 Msa0344690:intron 55.0%
AACCATTGCCCTCAGGGCAA+TGG + chr3_1:3473277-3473296 Msa0344690:intron 55.0%
AACCATTGCCCTGAGGGCAA+TGG - chr3_1:3473282-3473301 None:intergenic 55.0%
TGCCCTCAGGGCAATGGTTA+AGG + chr3_1:3473283-3473302 Msa0344690:intron 55.0%
ATCCAATGCCCCAAGGGCAA+TGG + chr3_1:3473417-3473436 Msa0344690:intron 55.0%
AACCATTGCCCTTGGGGCAT+TGG - chr3_1:3473422-3473441 None:intergenic 55.0%
ATAGAAGCCCAGCGAGTCTG+AGG - chr3_1:3473740-3473759 None:intergenic 55.0%
TGCACAACCGAAGGACTCAG+AGG + chr3_1:3473838-3473857 Msa0344690:CDS 55.0%
AGCACAACCTAAGGCCTCAG+AGG + chr3_1:3473862-3473881 Msa0344690:intron 55.0%
TCAGAGGCTCCTACTCAGGT+GGG + chr3_1:3473878-3473897 Msa0344690:intron 55.0%
GTGATTTCTCGGGTCGGGTC+GGG - chr3_1:3468212-3468231 None:intergenic 60.0%
CCCATCGGAACGGAACGAGT+TGG - chr3_1:3468335-3468354 None:intergenic 60.0%
GGAGTAAACGAAGCGGCGGA+CGG - chr3_1:3468429-3468448 None:intergenic 60.0%
!! GCCGAAAGCACCGGCAAAAG+AGG - chr3_1:3468450-3468469 None:intergenic 60.0%
! GGGCGGAGATAGCCCTTTTG+AGG - chr3_1:3470096-3470115 None:intergenic 60.0%
CGGAGATGAGGATGTTGCGC+TGG + chr3_1:3470564-3470583 Msa0344690:intron 60.0%
AGGATGTTGCGCTGGACGAG+TGG + chr3_1:3470572-3470591 Msa0344690:intron 60.0%
! AAGTGTGTTGTTGGGGGGGG+GGG + chr3_1:3471540-3471559 Msa0344690:intron 60.0%
! GGAAGTCGGGTCAGTGTTGG+TGG + chr3_1:3472193-3472212 Msa0344690:intron 60.0%
!! AGTCGGGTCAGTGTTGGTGG+AGG + chr3_1:3472196-3472215 Msa0344690:intron 60.0%
!! GGAGGCATAGGTGCTGAAGG+TGG + chr3_1:3472256-3472275 Msa0344690:intron 60.0%
GTGCTGAAGGTGGAGCCAAC+TGG + chr3_1:3472266-3472285 Msa0344690:intron 60.0%
TCCCCTCATCCAATGCCCCA+AGG + chr3_1:3473410-3473429 Msa0344690:intron 60.0%
!! CCCTTGGGGCATTGGATGAG+GGG - chr3_1:3473414-3473433 None:intergenic 60.0%
CCCCTCATCCAATGCCCCAA+GGG + chr3_1:3473411-3473430 Msa0344690:intron 60.0%
!! GCCCTTGGGGCATTGGATGA+GGG - chr3_1:3473415-3473434 None:intergenic 60.0%
!! TGCCCTTGGGGCATTGGATG+AGG - chr3_1:3473416-3473435 None:intergenic 60.0%
TAGGGAGTCCTCAGACTCGC+TGG + chr3_1:3473729-3473748 Msa0344690:intron 60.0%
AGGGAGTCCTCAGACTCGCT+GGG + chr3_1:3473730-3473749 Msa0344690:intron 60.0%
!! GTAGGAGCCTCTGAGGCCTT+AGG - chr3_1:3473872-3473891 None:intergenic 60.0%
CACCTGAGTAGGAGCCTCTG+AGG - chr3_1:3473879-3473898 None:intergenic 60.0%
CTCAGAGGCTCCTACTCAGG+TGG + chr3_1:3473877-3473896 Msa0344690:intron 60.0%
GCGGACGGTGAGATCAAGGC+AGG - chr3_1:3468414-3468433 None:intergenic 65.0%
AGCGGCGGACGGTGAGATCA+AGG - chr3_1:3468418-3468437 None:intergenic 65.0%
! GAGGAGACCGCCGAAAGCAC+CGG - chr3_1:3468459-3468478 None:intergenic 65.0%
AGGGCTATCTCCGCCCCTGA+TGG + chr3_1:3470100-3470119 Msa0344690:intron 65.0%
! AGTGTGTTGTTGGGGGGGGG+GGG + chr3_1:3471541-3471560 Msa0344690:intron 65.0%
GGCCTCAGAGGCTCCTACTC+AGG + chr3_1:3473874-3473893 Msa0344690:intron 65.0%
! GTGTGTTGTTGGGGGGGGGG+GGG + chr3_1:3471542-3471561 Msa0344690:intron 70.0%
! TGTGTTGTTGGGGGGGGGGG+GGG + chr3_1:3471543-3471562 Msa0344690:intron 70.0%
!! GTGGGCTGGGCGAGGCCTTG+TGG + chr3_1:3468175-3468194 Msa0344690:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 3468169 3474888 3468169 ID=Msa0344690;Name=Msa0344690
chr3_1 mRNA 3468169 3474888 3468169 ID=Msa0344690-mRNA-1;Parent=Msa0344690;Name=Msa0344690-mRNA-1;_AED=0.02;_eAED=0.02;_QI=181|0.5|0.66|1|1|1|3|432|94
chr3_1 exon 3468169 3468485 3468169 ID=Msa0344690-mRNA-1:exon:1055;Parent=Msa0344690-mRNA-1
chr3_1 exon 3473732 3473859 3473732 ID=Msa0344690-mRNA-1:exon:1056;Parent=Msa0344690-mRNA-1
chr3_1 exon 3474436 3474888 3474436 ID=Msa0344690-mRNA-1:exon:1057;Parent=Msa0344690-mRNA-1
chr3_1 five_prime_UTR 3468169 3468349 3468169 ID=Msa0344690-mRNA-1:five_prime_utr;Parent=Msa0344690-mRNA-1
chr3_1 CDS 3468350 3468485 3468350 ID=Msa0344690-mRNA-1:cds;Parent=Msa0344690-mRNA-1
chr3_1 CDS 3473732 3473859 3473732 ID=Msa0344690-mRNA-1:cds;Parent=Msa0344690-mRNA-1
chr3_1 CDS 3474436 3474456 3474436 ID=Msa0344690-mRNA-1:cds;Parent=Msa0344690-mRNA-1
chr3_1 three_prime_UTR 3474457 3474888 3474457 ID=Msa0344690-mRNA-1:three_prime_utr;Parent=Msa0344690-mRNA-1
Gene Sequence

>Msa0344690

ATGGGTGAAAATAAAGAACAATTAATTCCTCAAAAGTATGACGTCGATGCCAAATGGGATGCCTGCCTTGATCTCACCGTCCGCCGCTTCGTTTACTCCTCTTTTGCCGGTGCTTTCGGCGGTCTCCTCCTTTTCAGGAGTCCTCAGACTCGCTGGGCTTCTATTGCTTTTGGTGCTGGAGTGGGAATAGGATCTGCATACACAGAATGTTCTCGTCTGTTTGATGGATCTCCAGCAAAGCTTGCACAACCGAAGGACTCAGAGATTGTGCAGGATTCTGAATAG

Protein sequence

>Msa0344690

MGENKEQLIPQKYDVDAKWDACLDLTVRRFVYSSFAGAFGGLLLFRSPQTRWASIAFGAGVGIGSAYTECSRLFDGSPAKLAQPKDSEIVQDSE*