AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0892860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0892860 MtrunA17_Chr6g0476061 97.806 319 2 1 1 314 1 319 0.0 620
Msa0892860 MtrunA17_Chr1g0188211 53.509 342 112 13 1 312 1 325 9.65e-89 268
Msa0892860 MtrunA17_Chr7g0245841 41.618 346 153 10 1 314 1 329 2.61e-52 175
Msa0892860 MtrunA17_Chr6g0476241 46.296 216 91 5 43 255 112 305 2.05e-47 161
Msa0892860 MtrunA17_Chr4g0056761 53.182 220 87 7 43 253 64 276 6.27e-44 153
Msa0892860 MtrunA17_Chr8g0351761 49.091 220 91 7 50 258 70 279 4.43e-41 146
Msa0892860 MtrunA17_Chr1g0179461 41.921 229 108 6 51 264 69 287 1.27e-36 134
Msa0892860 MtrunA17_Chr4g0054661 39.912 228 116 5 51 263 73 294 3.83e-34 127
Msa0892860 MtrunA17_Chr5g0397551 36.704 267 139 7 1 248 1 256 6.22e-32 121
Msa0892860 MtrunA17_Chr7g0247431 39.648 227 124 5 29 255 74 287 6.40e-31 119
Msa0892860 MtrunA17_Chr8g0349091 41.784 213 107 7 44 250 82 283 5.89e-29 113
Msa0892860 MtrunA17_Chr5g0398621 40.183 219 97 7 51 260 46 239 2.13e-28 110
Msa0892860 MtrunA17_Chr8g0386741 41.146 192 105 4 50 240 96 280 9.49e-26 105
Msa0892860 MtrunA17_Chr3g0133051 36.913 149 82 3 105 252 88 225 2.82e-23 97.1
Msa0892860 MtrunA17_Chr7g0274821 49.167 120 58 1 122 241 140 256 2.92e-23 98.6
Msa0892860 MtrunA17_Chr4g0027331 50.862 116 54 2 122 234 16 131 4.89e-23 92.8
Msa0892860 MtrunA17_Chr1g0190011 37.129 202 110 6 48 245 40 228 5.39e-23 97.1
Msa0892860 MtrunA17_Chr4g0027371 40.385 156 87 3 122 274 16 168 1.21e-22 94.4
Msa0892860 MtrunA17_Chr4g0027351 53.211 109 48 2 128 235 22 128 1.68e-22 91.3
Msa0892860 MtrunA17_Chr4g0027301 42.276 123 66 3 122 241 23 143 1.19e-18 80.9
Msa0892860 MtrunA17_Chr3g0112131 43.966 116 62 1 125 240 106 218 1.09e-17 82.0
Msa0892860 MtrunA17_Chr1g0165101 35.111 225 116 7 39 246 73 284 1.23e-17 82.4
Msa0892860 MtrunA17_Chr5g0427311 39.370 127 69 4 128 252 83 203 2.52e-17 79.7
Msa0892860 MtrunA17_Chr1g0168121 38.983 118 69 1 123 240 67 181 1.10e-14 72.8
Msa0892860 MtrunA17_Chr4g0054651 42.373 118 61 2 125 240 103 215 5.35e-14 71.2
Msa0892860 MtrunA17_Chr7g0250031 42.017 119 66 1 122 240 81 196 1.15e-13 70.1
Msa0892860 MtrunA17_Chr5g0435681 41.071 112 63 1 129 240 120 228 1.61e-13 70.1
Msa0892860 MtrunA17_Chr5g0417581 37.719 114 69 2 122 234 16 128 1.12e-12 65.9
Msa0892860 MtrunA17_Chr5g0398531 41.379 116 65 1 125 240 127 239 1.13e-12 67.8
Msa0892860 MtrunA17_Chr1g0190051 38.793 116 68 1 125 240 101 213 3.61e-12 65.9
Msa0892860 MtrunA17_Chr8g0351651 39.655 116 67 1 125 240 113 225 3.69e-12 65.9
Msa0892860 MtrunA17_Chr5g0443311 39.496 119 65 2 125 241 78 191 4.04e-12 65.5
Msa0892860 MtrunA17_Chr3g0086021 35.185 108 67 1 153 260 137 241 6.21e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0892860 AT5G62260.1 53.304 227 84 7 44 252 69 291 1.33e-60 199
Msa0892860 AT5G62260.3 53.304 227 84 7 44 252 69 291 1.33e-60 199
Msa0892860 AT5G62260.2 54.808 208 76 6 50 243 75 278 9.83e-59 190
Msa0892860 AT4G25320.1 48.000 250 114 5 38 276 73 317 2.54e-57 190
Msa0892860 AT4G12080.1 49.785 233 93 8 45 259 84 310 1.47e-52 176
Msa0892860 AT5G51590.1 52.273 220 77 4 49 241 76 294 1.71e-51 175
Msa0892860 AT4G00200.2 47.368 247 76 7 38 259 43 260 7.96e-47 160
Msa0892860 AT4G00200.1 47.368 247 76 7 38 259 43 260 7.96e-47 160
Msa0892860 AT2G33620.1 47.887 213 99 4 50 260 96 298 1.88e-43 152
Msa0892860 AT2G33620.4 47.887 213 99 4 50 260 96 298 1.88e-43 152
Msa0892860 AT2G33620.2 47.887 213 99 4 50 260 96 298 1.88e-43 152
Msa0892860 AT2G33620.3 47.887 213 99 4 50 260 96 298 1.88e-43 152
Msa0892860 AT4G22770.2 44.978 229 116 5 50 269 71 298 9.12e-41 145
Msa0892860 AT4G22770.1 44.978 229 116 5 50 269 71 298 9.12e-41 145
Msa0892860 AT5G46640.1 42.593 216 108 4 48 253 99 308 2.41e-31 121
Msa0892860 AT4G17950.1 40.724 221 109 4 49 249 129 347 8.83e-31 120
Msa0892860 AT1G63470.1 41.969 193 105 5 50 240 104 291 2.08e-30 118
Msa0892860 AT2G45850.1 46.212 132 68 1 122 250 159 290 1.11e-29 116
Msa0892860 AT2G45850.2 46.212 132 68 1 122 250 159 290 1.11e-29 116
Msa0892860 AT3G04590.1 45.968 124 64 1 122 245 168 288 5.94e-28 110
Msa0892860 AT3G04590.2 47.899 119 59 1 122 240 168 283 1.42e-27 111
Msa0892860 AT2G45850.3 47.059 119 63 0 122 240 159 277 2.73e-27 108
Msa0892860 AT3G61310.1 34.553 246 131 5 45 272 95 328 7.45e-27 108
Msa0892860 AT1G63480.5 37.696 191 105 6 50 240 92 268 3.16e-25 103
Msa0892860 AT1G63480.7 37.696 191 105 6 50 240 92 268 3.16e-25 103
Msa0892860 AT1G63480.4 37.696 191 105 6 50 240 92 268 3.16e-25 103
Msa0892860 AT1G63480.3 37.696 191 105 6 50 240 92 268 3.16e-25 103
Msa0892860 AT1G63480.6 37.696 191 105 6 50 240 92 268 3.16e-25 103
Msa0892860 AT1G63480.2 37.696 191 105 6 50 240 98 274 4.32e-25 103
Msa0892860 AT1G63480.1 37.696 191 105 6 50 240 98 274 4.32e-25 103
Msa0892860 AT5G49700.1 37.500 152 80 4 105 252 70 210 1.28e-20 90.1
Msa0892860 AT2G36560.1 38.636 132 79 2 122 251 102 233 6.13e-19 87.8
Msa0892860 AT4G14465.1 43.103 116 63 1 125 240 94 206 2.80e-16 77.8
Msa0892860 AT1G14490.1 37.086 151 80 4 128 274 33 172 4.98e-16 75.9
Msa0892860 AT1G14490.2 39.535 129 70 3 128 252 52 176 1.04e-15 75.5
Msa0892860 AT2G35270.1 43.333 120 61 2 123 240 103 217 3.65e-15 74.7
Msa0892860 AT3G60870.1 37.069 116 68 2 125 240 86 196 8.45e-14 70.5
Msa0892860 AT3G55560.1 40.517 116 67 2 125 240 115 228 1.75e-13 70.5
Msa0892860 AT4G17800.1 40.517 116 66 1 125 240 109 221 1.99e-13 70.1
Msa0892860 AT1G76500.1 36.800 125 67 2 125 240 99 220 2.38e-13 69.7
Msa0892860 AT5G28590.1 35.606 132 61 2 118 249 23 130 1.22e-12 66.6
Msa0892860 AT2G42940.1 36.134 119 69 2 125 241 80 193 5.73e-12 65.1

Find 95 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAGTGATTTATGAGAATT+AGG 0.142788 6_1:-74343890 None:intergenic
ATTATTATATTAATGGTTTA+TGG 0.148949 6_1:+74349741 Msa0892860:three_prime_UTR
ACCTAACATTATTATATTAA+TGG 0.161673 6_1:+74349734 Msa0892860:three_prime_UTR
CTTCCAGATTCACTCTTTCT+AGG 0.207106 6_1:-74344431 None:intergenic
GGGTGCACTGGCTGGTTTGC+TGG 0.209879 6_1:+74348513 Msa0892860:CDS
ACCATTGAAGAGAAAGAAAA+AGG 0.234035 6_1:-74343995 None:intergenic
ATTATGTACTAGTAGGTATT+TGG 0.240019 6_1:+74349588 Msa0892860:three_prime_UTR
CTCTTTGGATTCTCCTTCTC+TGG 0.284566 6_1:-74349240 None:intergenic
TGGTTGTAGCAAGTAGATTT+AGG 0.285005 6_1:+74349629 Msa0892860:three_prime_UTR
GTCAAGCATGAGCATCTTAA+TGG 0.290935 6_1:-74349468 None:intergenic
TGATCGACCCTCTGCCTCTT+TGG 0.296914 6_1:-74349255 None:intergenic
AACGGAATGGAAGCCGAAAT+TGG 0.321360 6_1:-74344476 None:intergenic
ATTGTTATAAATTCTAAATA+AGG 0.335255 6_1:-74349670 None:intergenic
GGTTAAATGTAGCTCTGATA+TGG 0.363519 6_1:+74349609 Msa0892860:three_prime_UTR
ACCATTAATATAATAATGTT+AGG 0.371921 6_1:-74349735 None:intergenic
CACGTGCTTACTGTAAATTC+TGG 0.383512 6_1:+74345937 Msa0892860:CDS
AGTGGTGGTGGTGGAGGTGG+AGG 0.384533 6_1:+74344524 Msa0892860:CDS
TTGTTATATTATGTACTAGT+AGG 0.384545 6_1:+74349581 Msa0892860:three_prime_UTR
TTTGGCAATGGCCAAGGCTC+TGG 0.387972 6_1:+74349402 Msa0892860:CDS
CCGGCTCCGGTGCCGGCTGC+CGG 0.388810 6_1:+74344377 Msa0892860:CDS
GAAGAATTGAGAACTGATAT+TGG 0.391643 6_1:+74349333 Msa0892860:CDS
GGCTTCTTAATTGATTCAAA+TGG 0.394342 6_1:-74344557 None:intergenic
AATATCAGTTCTCAATTCTT+CGG 0.403456 6_1:-74349331 None:intergenic
AGAGTGATTTATGAGAATTA+GGG 0.403606 6_1:-74343889 None:intergenic
CTCTTTAGAATCTGTAAACT+AGG 0.406141 6_1:+74343908 Msa0892860:five_prime_UTR
AAAAGTGGTGGTGGTGGAGG+TGG 0.408449 6_1:+74344521 Msa0892860:CDS
GTTGTCACCGATGCCAATTT+CGG 0.412586 6_1:+74344463 Msa0892860:CDS
TGGGTCCACTGGAGAGTTAC+CGG 0.422219 6_1:+74344358 Msa0892860:CDS
TGGAAAAGTGGTGGTGGTGG+AGG 0.429615 6_1:+74344518 Msa0892860:CDS
TCGGCTTCCATTCCGTTGAC+CGG 0.436479 6_1:+74344482 Msa0892860:CDS
CACTGGAGAGTTACCGGCTC+CGG 0.437007 6_1:+74344364 Msa0892860:CDS
AGGCCTAGAAAGAGTGAATC+TGG 0.438792 6_1:+74344428 Msa0892860:CDS
GGTTGGAAAAGTGGTGGTGG+TGG 0.438943 6_1:+74344515 Msa0892860:CDS
GCTGGTTTGCTGGTAGCTGC+TGG 0.440446 6_1:+74348523 Msa0892860:CDS
TCAGGTTGGAAAAGTGGTGG+TGG 0.447028 6_1:+74344512 Msa0892860:CDS
GAGGCAGAGGGTCGATCATT+CGG 0.452684 6_1:+74349260 Msa0892860:CDS
AAACCGGCCGGTGACATGAT+AGG 0.454468 6_1:-74349366 None:intergenic
TCAAAATCATTCAACTTCAA+AGG 0.458053 6_1:-74344578 None:intergenic
TCATTTGTGCCAACTGAGAA+TGG 0.458331 6_1:+74348424 Msa0892860:CDS
TGGCGGTACTTCAACATATG+AGG 0.458796 6_1:+74347562 Msa0892860:CDS
GGATTGACAAAGAGCAGATC+TGG 0.464623 6_1:+74348445 Msa0892860:CDS
TTTGTCAATCCATTCTCAGT+TGG 0.465539 6_1:-74348433 None:intergenic
CCGGCAGCCGGCACCGGAGC+CGG 0.477977 6_1:-74344377 None:intergenic
AAAAGAAGCAAAGTTAAAAC+CGG 0.482386 6_1:-74349382 None:intergenic
GTCTCATTGGCAGGTCCAAA+TGG 0.485852 6_1:+74348478 Msa0892860:CDS
GTTTGAAATTTGAGTGAATG+TGG 0.488844 6_1:+74349693 Msa0892860:three_prime_UTR
GCATGAGCATCTTAATGGCT+AGG 0.491227 6_1:-74349463 None:intergenic
AGAGTTACCGGCTCCGGTGC+CGG 0.492329 6_1:+74344370 Msa0892860:CDS
ACACCACCGGCAGCCGGCAC+CGG 0.499899 6_1:-74344383 None:intergenic
AGGTGAAGAAGAAGAGGGGC+AGG 0.505369 6_1:+74344408 Msa0892860:CDS
AGGAGAATCCAAAGAGGCAG+AGG 0.506599 6_1:+74349247 Msa0892860:CDS
TGGTAGAATGAGTGTCTCAT+TGG 0.507910 6_1:+74348465 Msa0892860:CDS
GGTAGCTGCTGGTTCTGTGC+AGG 0.510940 6_1:+74348534 Msa0892860:CDS
TTCGAGATTCTTTCCTTGAG+CGG 0.516198 6_1:+74348400 Msa0892860:CDS
AGAATGAGTGTCTCATTGGC+AGG 0.525010 6_1:+74348469 Msa0892860:CDS
AATGTTAACCAGGCCCCACC+TGG 0.534870 6_1:+74344302 Msa0892860:CDS
GTGTGGAGGTGAAGAAGAAG+AGG 0.538667 6_1:+74344402 Msa0892860:CDS
GATAATGGAATATCACCCTT+CGG 0.542326 6_1:+74345898 Msa0892860:intron
GCTCCGGTGCCGGCTGCCGG+TGG 0.544625 6_1:+74344380 Msa0892860:CDS
GCCGGCTGCCGGTGGTGTGG+AGG 0.547593 6_1:+74344388 Msa0892860:CDS
GAGCTAAATTGAAGCCAGGT+GGG 0.550505 6_1:-74344316 None:intergenic
ACCTCCACACCACCGGCAGC+CGG 0.551201 6_1:-74344389 None:intergenic
AGCTAAATTGAAGCCAGGTG+GGG 0.551264 6_1:-74344315 None:intergenic
ATATCTATTCTGTCTGCGAC+TGG 0.555702 6_1:+74347500 Msa0892860:CDS
TAATATGAGATGATGTAGGA+GGG 0.557130 6_1:-74349293 None:intergenic
TGTGGAGGTGAAGAAGAAGA+GGG 0.558126 6_1:+74344403 Msa0892860:CDS
AAAATCTCCGGTCAACGGAA+TGG 0.558235 6_1:-74344489 None:intergenic
GGTGCCGGCTGCCGGTGGTG+TGG 0.560838 6_1:+74344385 Msa0892860:CDS
CATGAGCATCTTAATGGCTA+GGG 0.563864 6_1:-74349462 None:intergenic
TACCGCCACAAGCATCCGAC+TGG 0.566838 6_1:-74347547 None:intergenic
GAATGTAACACTTCGCCAGT+CGG 0.569594 6_1:+74347532 Msa0892860:CDS
TTAATATGAGATGATGTAGG+AGG 0.569764 6_1:-74349294 None:intergenic
TGGCACAAATGAGCCGCTCA+AGG 0.571234 6_1:-74348413 None:intergenic
TCTTTAGAATCTGTAAACTA+GGG 0.576438 6_1:+74343909 Msa0892860:five_prime_UTR
ATGATGAGTTGCCAGAGCCT+TGG 0.580544 6_1:-74349413 None:intergenic
TTATAGTCAAGAGAATCAAA+CGG 0.582782 6_1:-74349554 None:intergenic
TTATTAATATGAGATGATGT+AGG 0.582862 6_1:-74349297 None:intergenic
GTGGAGGTGAAGAAGAAGAG+GGG 0.585769 6_1:+74344404 Msa0892860:CDS
CTTCTTCACCTCCACACCAC+CGG 0.587259 6_1:-74344396 None:intergenic
GAGTGAATCTGGAAGTAAGC+CGG 0.592179 6_1:+74344439 Msa0892860:CDS
GCATGCTGTTAATGTTAACC+AGG 0.592649 6_1:+74344292 Msa0892860:CDS
ATTGGCATCGGTGACAACGC+CGG 0.600825 6_1:-74344458 None:intergenic
AATATGAGATGATGTAGGAG+GGG 0.606351 6_1:-74349292 None:intergenic
AATGAAGCCTATCATGTCAC+CGG 0.606781 6_1:+74349359 Msa0892860:CDS
GAAGCAAAGTTAAAACCGGC+CGG 0.607612 6_1:-74349378 None:intergenic
CGCCAGTCGGATGCTTGTGG+CGG 0.616878 6_1:+74347545 Msa0892860:CDS
TGAGCTAAATTGAAGCCAGG+TGG 0.624725 6_1:-74344317 None:intergenic
CGGAGCCGGTAACTCTCCAG+TGG 0.638034 6_1:-74344363 None:intergenic
ATGGAAGCCGAAATTGGCAT+CGG 0.640906 6_1:-74344470 None:intergenic
GGAGAATCCAAAGAGGCAGA+GGG 0.642206 6_1:+74349248 Msa0892860:CDS
TGGCAACTCATCATCATCTG+CGG 0.650322 6_1:+74349422 Msa0892860:CDS
GAATTGAGAACTGATATTGG+TGG 0.652922 6_1:+74349336 Msa0892860:CDS
GATGATGTAGGAGGGGCAGT+TGG 0.671450 6_1:-74349285 None:intergenic
GCTTACTGTAAATTCTGGAG+AGG 0.675143 6_1:+74345942 Msa0892860:CDS
CAGAGAAGGAGAATCCAAAG+AGG 0.694397 6_1:+74349241 Msa0892860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATCATATATTTTAAAAAG+GGG - chr6_1:74346158-74346177 None:intergenic 10.0%
!! TACAATTAACAAATATATTT+GGG - chr6_1:74347404-74347423 None:intergenic 10.0%
!! ATACAATTAACAAATATATT+TGG - chr6_1:74347405-74347424 None:intergenic 10.0%
!! TAAAAAATTGTAAAAGAAAA+TGG + chr6_1:74349110-74349129 Msa0892860:intron 10.0%
!! ATTGTTATAAATTCTAAATA+AGG - chr6_1:74349673-74349692 None:intergenic 10.0%
!! ATTATTATATTAATGGTTTA+TGG + chr6_1:74349741-74349760 Msa0892860:three_prime_UTR 10.0%
!! GTAAATGATATTATTTGATT+CGG + chr6_1:74344972-74344991 Msa0892860:intron 15.0%
!!! TCATTTTTTCAAATTTTTAC+CGG + chr6_1:74345237-74345256 Msa0892860:intron 15.0%
!! TTTATATTAGATTGTAAATC+CGG - chr6_1:74346135-74346154 None:intergenic 15.0%
!! GTACTTTCTTTATATTAATA+TGG + chr6_1:74347361-74347380 Msa0892860:intron 15.0%
!!! TTTAAAACTTCACATTAATT+CGG + chr6_1:74347634-74347653 Msa0892860:intron 15.0%
!! AAAAAAAATAAAAAAACGCA+TGG - chr6_1:74347764-74347783 None:intergenic 15.0%
!! CATAAAAATTATTGAAACTA+GGG - chr6_1:74347871-74347890 None:intergenic 15.0%
!! TCATAAAAATTATTGAAACT+AGG - chr6_1:74347872-74347891 None:intergenic 15.0%
!! ATGAAATCATCAAATAAAAA+GGG + chr6_1:74348344-74348363 Msa0892860:intron 15.0%
!! TTTAGTATCTGATAAAATAT+TGG + chr6_1:74348572-74348591 Msa0892860:intron 15.0%
!! TTAAATGAAAGAAAAACTTA+GGG + chr6_1:74348894-74348913 Msa0892860:intron 15.0%
!!! TTCATTTTAAATTGCTAAAA+AGG + chr6_1:74348968-74348987 Msa0892860:intron 15.0%
!! ACCTAACATTATTATATTAA+TGG + chr6_1:74349734-74349753 Msa0892860:three_prime_UTR 15.0%
!! ACCATTAATATAATAATGTT+AGG - chr6_1:74349738-74349757 None:intergenic 15.0%
!!! TTAGAAATTTTTGTGTTTCT+GGG + chr6_1:74344136-74344155 Msa0892860:five_prime_UTR 20.0%
!!! TTTTGAAGATTTTGAGATTT+TGG + chr6_1:74344207-74344226 Msa0892860:five_prime_UTR 20.0%
!!! TTTGAAGATTTTGAGATTTT+GGG + chr6_1:74344208-74344227 Msa0892860:five_prime_UTR 20.0%
!!! TTATGTGTTATGTTTTGTTT+TGG + chr6_1:74344763-74344782 Msa0892860:intron 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG - chr6_1:74345066-74345085 None:intergenic 20.0%
!! AATCACATAATTATATGTGT+TGG + chr6_1:74345081-74345100 Msa0892860:intron 20.0%
!! TTATGACATATTGCTAAATA+AGG + chr6_1:74345435-74345454 Msa0892860:intron 20.0%
!!! ATCTATTTTGCTGATATAAT+TGG + chr6_1:74345737-74345756 Msa0892860:intron 20.0%
!!! TCTAACTATTTTCAGAATAT+AGG - chr6_1:74345990-74346009 None:intergenic 20.0%
!! TTATATTAGATTGTAAATCC+GGG - chr6_1:74346134-74346153 None:intergenic 20.0%
!! TTTATTACCACAAAAATTGT+CGG - chr6_1:74346218-74346237 None:intergenic 20.0%
!!! TGGTAATAAAAAAAGTGTAA+TGG + chr6_1:74346228-74346247 Msa0892860:intron 20.0%
!! ACTCAAGGTTAAAAAAAAAA+AGG - chr6_1:74346614-74346633 None:intergenic 20.0%
!!! TTTGTTCATATTGACTTAAT+TGG + chr6_1:74346650-74346669 Msa0892860:intron 20.0%
!!! ACTTAATTGGTTTTTCAATT+TGG + chr6_1:74346663-74346682 Msa0892860:intron 20.0%
!! ATCCATATCATGTTTATAAT+CGG - chr6_1:74346801-74346820 None:intergenic 20.0%
!!! AAATACTAGGTTTTTCAATT+TGG - chr6_1:74346872-74346891 None:intergenic 20.0%
!! CCTTAAAATAATAAAGAAAC+CGG + chr6_1:74347236-74347255 Msa0892860:intron 20.0%
!! TGGTAATAAAAAAAGTGAAA+TGG - chr6_1:74347303-74347322 None:intergenic 20.0%
!! AACAAATATATTTGGGTATT+GGG - chr6_1:74347397-74347416 None:intergenic 20.0%
!! TAACAAATATATTTGGGTAT+TGG - chr6_1:74347398-74347417 None:intergenic 20.0%
!! TATTAAATTATTACCTGTGT+CGG - chr6_1:74347944-74347963 None:intergenic 20.0%
!! GATGAAATCATCAAATAAAA+AGG + chr6_1:74348343-74348362 Msa0892860:intron 20.0%
!! TGAAATCATCAAATAAAAAG+GGG + chr6_1:74348345-74348364 Msa0892860:intron 20.0%
!! CTTAAATGAAAGAAAAACTT+AGG + chr6_1:74348893-74348912 Msa0892860:intron 20.0%
!!! TTTAAAATGAAAACAGATGT+TGG - chr6_1:74348959-74348978 None:intergenic 20.0%
!!! GTTTTCATTGTTTACAAAAA+AGG - chr6_1:74349045-74349064 None:intergenic 20.0%
!! TTCAAGATTTCTTAAAATGT+TGG + chr6_1:74349079-74349098 Msa0892860:intron 20.0%
!! GAAAATGGTTAGAAAAATAT+TGG + chr6_1:74349125-74349144 Msa0892860:intron 20.0%
!! TTATTAATATGAGATGATGT+AGG - chr6_1:74349300-74349319 None:intergenic 20.0%
!! AAAAACTTTAATCTCTTCAT+CGG - chr6_1:74349517-74349536 None:intergenic 20.0%
!! TTGTTATATTATGTACTAGT+AGG + chr6_1:74349581-74349600 Msa0892860:three_prime_UTR 20.0%
! AGAGTGATTTATGAGAATTA+GGG - chr6_1:74343892-74343911 None:intergenic 25.0%
! AAGAGTGATTTATGAGAATT+AGG - chr6_1:74343893-74343912 None:intergenic 25.0%
!!! TCTTTAGAATCTGTAAACTA+GGG + chr6_1:74343909-74343928 Msa0892860:five_prime_UTR 25.0%
!!! AGCAGATTTTTCAATTTTGA+TGG - chr6_1:74344061-74344080 None:intergenic 25.0%
! AAAATTGAAAAATCTGCTTC+TGG + chr6_1:74344063-74344082 Msa0892860:five_prime_UTR 25.0%
! AAATTGAAAAATCTGCTTCT+GGG + chr6_1:74344064-74344083 Msa0892860:five_prime_UTR 25.0%
!! GTTAGAAATTTTTGTGTTTC+TGG + chr6_1:74344135-74344154 Msa0892860:five_prime_UTR 25.0%
!! GATTTGATTCTGAGAAAAAA+TGG + chr6_1:74344244-74344263 Msa0892860:exon 25.0%
!! AAAATACGTTGAATTTTGCT+GGG + chr6_1:74344339-74344358 Msa0892860:CDS 25.0%
! TCAAAATCATTCAACTTCAA+AGG - chr6_1:74344581-74344600 None:intergenic 25.0%
!!! AAGTTGAATGATTTTGATGA+AGG + chr6_1:74344584-74344603 Msa0892860:CDS 25.0%
!! AGTTTTACTGTTACATTTGT+TGG + chr6_1:74344697-74344716 Msa0892860:intron 25.0%
!!! TTTGGATTTGATTTGATTCA+TGG + chr6_1:74344781-74344800 Msa0892860:intron 25.0%
!! CTTCAATTTAAGATCTGAAA+GGG - chr6_1:74344843-74344862 None:intergenic 25.0%
!! TCTTCAATTTAAGATCTGAA+AGG - chr6_1:74344844-74344863 None:intergenic 25.0%
!!! TATTATTTTTTTCCTCTACG+AGG + chr6_1:74344949-74344968 Msa0892860:intron 25.0%
!!! ATTATTTTTTTCCTCTACGA+GGG + chr6_1:74344950-74344969 Msa0892860:intron 25.0%
! ACTAAAAAAATCAGACAACT+AGG - chr6_1:74345542-74345561 None:intergenic 25.0%
!!! AATGACAGTTTTGATTTATC+TGG + chr6_1:74345610-74345629 Msa0892860:intron 25.0%
! ATGACTATGATTTATGCATT+TGG + chr6_1:74345797-74345816 Msa0892860:intron 25.0%
! TTTCAGAATATAGGCTTAAA+AGG - chr6_1:74345981-74346000 None:intergenic 25.0%
!! CATTAAGCTTCTTTTGAATA+TGG - chr6_1:74346039-74346058 None:intergenic 25.0%
! CATATTCAAAAGAAGCTTAA+TGG + chr6_1:74346037-74346056 Msa0892860:intron 25.0%
! TATATTAGATTGTAAATCCG+GGG - chr6_1:74346133-74346152 None:intergenic 25.0%
! TAAATGTGAGTGATTAGATT+AGG - chr6_1:74346293-74346312 None:intergenic 25.0%
!! ACGAAAATTGATGATAAACA+CGG - chr6_1:74346540-74346559 None:intergenic 25.0%
! TAAAAGATAGAATCAACTCA+AGG - chr6_1:74346629-74346648 None:intergenic 25.0%
! AATTGATCATAAACAGGATA+TGG - chr6_1:74346739-74346758 None:intergenic 25.0%
! CTCATAAATTGATCATAAAC+AGG - chr6_1:74346745-74346764 None:intergenic 25.0%
! TCTCATAATTCAGTATTTGT+CGG - chr6_1:74346773-74346792 None:intergenic 25.0%
! AACCGATTATAAACATGATA+TGG + chr6_1:74346796-74346815 Msa0892860:intron 25.0%
! ATTTATCGCATTGAAATACT+AGG - chr6_1:74346885-74346904 None:intergenic 25.0%
!!! TCTTCATATGTTTTATTTCG+AGG - chr6_1:74347076-74347095 None:intergenic 25.0%
! ATATGAAGAGATGATAAACA+CGG + chr6_1:74347087-74347106 Msa0892860:intron 25.0%
! TCTTCAAATGTATTATTTCG+AGG - chr6_1:74347127-74347146 None:intergenic 25.0%
! ATACATTTGAAGAGAAATAG+TGG + chr6_1:74347134-74347153 Msa0892860:intron 25.0%
!!! CCGGTTTCTTTATTATTTTA+AGG - chr6_1:74347239-74347258 None:intergenic 25.0%
! TAAAATAATAAAGAAACCGG+TGG + chr6_1:74347239-74347258 Msa0892860:intron 25.0%
!! AAAAAATGGATCGGTAATTT+TGG - chr6_1:74347323-74347342 None:intergenic 25.0%
! AAGGAGAAAAAAAAATGGAT+CGG - chr6_1:74347332-74347351 None:intergenic 25.0%
! AACGAAAGGAGAAAAAAAAA+TGG - chr6_1:74347337-74347356 None:intergenic 25.0%
! TTGATATCTAATGCATACAA+TGG - chr6_1:74347717-74347736 None:intergenic 25.0%
! ATGGAATTATGTCAAAACAA+TGG - chr6_1:74347828-74347847 None:intergenic 25.0%
!!! AGATATTTTTGTGCTTTTAC+AGG + chr6_1:74348372-74348391 Msa0892860:intron 25.0%
!!! GATATTTTTGTGCTTTTACA+GGG + chr6_1:74348373-74348392 Msa0892860:intron 25.0%
!! TAATTAACCTTTGTTGTAGA+AGG + chr6_1:74348788-74348807 Msa0892860:intron 25.0%
! AATATCAGTTCTCAATTCTT+CGG - chr6_1:74349334-74349353 None:intergenic 25.0%
! AAAAGAAGCAAAGTTAAAAC+CGG - chr6_1:74349385-74349404 None:intergenic 25.0%
! TTATAGTCAAGAGAATCAAA+CGG - chr6_1:74349557-74349576 None:intergenic 25.0%
! ATTATGTACTAGTAGGTATT+TGG + chr6_1:74349588-74349607 Msa0892860:three_prime_UTR 25.0%
!! CTCTTTAGAATCTGTAAACT+AGG + chr6_1:74343908-74343927 Msa0892860:five_prime_UTR 30.0%
ACCATTGAAGAGAAAGAAAA+AGG - chr6_1:74343998-74344017 None:intergenic 30.0%
! ATGGAAGAAAGAGAGATTTT+TGG + chr6_1:74344263-74344282 Msa0892860:CDS 30.0%
!!! AAAGAGAGATTTTTGGTTCT+GGG + chr6_1:74344270-74344289 Msa0892860:CDS 30.0%
! CAAAATACGTTGAATTTTGC+TGG + chr6_1:74344338-74344357 Msa0892860:CDS 30.0%
! GGCTTCTTAATTGATTCAAA+TGG - chr6_1:74344560-74344579 None:intergenic 30.0%
!! TGAAGGTACATGACAATTTT+AGG + chr6_1:74344601-74344620 Msa0892860:intron 30.0%
AAACTAACTAACCAGATCAA+AGG - chr6_1:74344648-74344667 None:intergenic 30.0%
TTTGATTCATGGTTTAGAAG+TGG + chr6_1:74344792-74344811 Msa0892860:intron 30.0%
GATCTTAAATTGAAGATGTG+TGG + chr6_1:74344848-74344867 Msa0892860:intron 30.0%
! TTTTCTGTCATAGTAATGTG+AGG + chr6_1:74344887-74344906 Msa0892860:intron 30.0%
!!! TGAAGGGATTAGTTTTTATC+AGG + chr6_1:74345181-74345200 Msa0892860:intron 30.0%
!!! GAAGGGATTAGTTTTTATCA+GGG + chr6_1:74345182-74345201 Msa0892860:intron 30.0%
!!! AAGGGATTAGTTTTTATCAG+GGG + chr6_1:74345183-74345202 Msa0892860:intron 30.0%
GTATAATCTGTGATGTGAAA+AGG + chr6_1:74345468-74345487 Msa0892860:intron 30.0%
TTCTTCATTGCAGAATGTAA+TGG + chr6_1:74345579-74345598 Msa0892860:intron 30.0%
ATATGCATAAAGACAAAACC+AGG - chr6_1:74345694-74345713 None:intergenic 30.0%
ATATGATGATTTAGTGAAGC+AGG + chr6_1:74345710-74345729 Msa0892860:intron 30.0%
TATGATGATTTAGTGAAGCA+GGG + chr6_1:74345711-74345730 Msa0892860:intron 30.0%
CCATTATCTACAAAATAGAC+AGG - chr6_1:74345886-74345905 None:intergenic 30.0%
! CCTGTCTATTTTGTAGATAA+TGG + chr6_1:74345883-74345902 Msa0892860:intron 30.0%
TGGCATTCAAATAAGTTTGT+AGG - chr6_1:74346019-74346038 None:intergenic 30.0%
! TTTTGTTAAATGCCAGTTGT+CGG + chr6_1:74346096-74346115 Msa0892860:intron 30.0%
ATATTAGATTGTAAATCCGG+GGG - chr6_1:74346132-74346151 None:intergenic 30.0%
GCCAATCGTTGTAATATTAT+CGG + chr6_1:74346449-74346468 Msa0892860:intron 30.0%
ACCGATAATATTACAACGAT+TGG - chr6_1:74346453-74346472 None:intergenic 30.0%
TTATCGGTAAACTTTCGTTA+AGG + chr6_1:74346465-74346484 Msa0892860:intron 30.0%
! ATTGATGATAAACACGGATA+TGG - chr6_1:74346534-74346553 None:intergenic 30.0%
ATTTGTAGTAAGCAATAGCA+TGG + chr6_1:74346586-74346605 Msa0892860:intron 30.0%
CTCTACAAACATTTATTGTG+AGG - chr6_1:74346830-74346849 None:intergenic 30.0%
!!! TCTTGTTTTTTTATCTTCGC+AGG - chr6_1:74346944-74346963 None:intergenic 30.0%
TTAGTAGTAAGGAATAGCAA+TGG - chr6_1:74346989-74347008 None:intergenic 30.0%
! TTGCTATTCCTTACTACTAA+CGG + chr6_1:74346989-74347008 Msa0892860:intron 30.0%
TATATCTTCCGTTAGTAGTA+AGG - chr6_1:74347000-74347019 None:intergenic 30.0%
AACTGATGATAAACACAGAT+AGG + chr6_1:74347041-74347060 Msa0892860:intron 30.0%
ACTGATGATAAACACAGATA+GGG + chr6_1:74347042-74347061 Msa0892860:intron 30.0%
CATAAGATTGTGACAACAAT+TGG + chr6_1:74347159-74347178 Msa0892860:intron 30.0%
GTGAAATGGCAATTAACAAA+GGG - chr6_1:74347289-74347308 None:intergenic 30.0%
AGTGAAATGGCAATTAACAA+AGG - chr6_1:74347290-74347309 None:intergenic 30.0%
!! AAGAAAGTACTACAAACGAA+AGG - chr6_1:74347351-74347370 None:intergenic 30.0%
!!! TTGTATTGTTGATTTTCCTC+TGG + chr6_1:74347419-74347438 Msa0892860:intron 30.0%
! TTCATTCCTATTTCTTTAGC+AGG + chr6_1:74347589-74347608 Msa0892860:intron 30.0%
! TCATTCCTATTTCTTTAGCA+GGG + chr6_1:74347590-74347609 Msa0892860:intron 30.0%
TATATCCCTGCTAAAGAAAT+AGG - chr6_1:74347598-74347617 None:intergenic 30.0%
CATACAATGGCAGAAATAAA+AGG - chr6_1:74347704-74347723 None:intergenic 30.0%
CCACTTAGCACATAAATAAT+AGG - chr6_1:74347794-74347813 None:intergenic 30.0%
CCTATTATTTATGTGCTAAG+TGG + chr6_1:74347791-74347810 Msa0892860:intron 30.0%
AATTCTTTCAATGAAAGGGA+TGG - chr6_1:74347847-74347866 None:intergenic 30.0%
GGGAAATTCTTTCAATGAAA+GGG - chr6_1:74347851-74347870 None:intergenic 30.0%
AGGGAAATTCTTTCAATGAA+AGG - chr6_1:74347852-74347871 None:intergenic 30.0%
ATGATTGTCCCTTGTAAATA+TGG + chr6_1:74347888-74347907 Msa0892860:intron 30.0%
GTCATAAGCCATATTTACAA+GGG - chr6_1:74347899-74347918 None:intergenic 30.0%
TGAATGTGTTTGTACTTCAT+AGG - chr6_1:74347921-74347940 None:intergenic 30.0%
ACATCTTTGATCTTAAGTGT+CGG + chr6_1:74348042-74348061 Msa0892860:intron 30.0%
! TTATACAACCATTTTCCCTT+GGG - chr6_1:74348104-74348123 None:intergenic 30.0%
! ATTATACAACCATTTTCCCT+TGG - chr6_1:74348105-74348124 None:intergenic 30.0%
AAAATAGCAGTGAATCAACT+CGG - chr6_1:74348205-74348224 None:intergenic 30.0%
TGTTGTTAGCATTTCTTACT+AGG - chr6_1:74348228-74348247 None:intergenic 30.0%
! CCTCTATTTGACACTATTTT+TGG - chr6_1:74348277-74348296 None:intergenic 30.0%
CCAAAAATAGTGTCAAATAG+AGG + chr6_1:74348274-74348293 Msa0892860:intron 30.0%
TTCATCTAGTGCTGTAATTA+GGG - chr6_1:74348329-74348348 None:intergenic 30.0%
TTTCATCTAGTGCTGTAATT+AGG - chr6_1:74348330-74348349 None:intergenic 30.0%
TTGAACGTAATTACATGTGT+CGG + chr6_1:74348683-74348702 Msa0892860:intron 30.0%
! GTTATTTCCTTCTACAACAA+AGG - chr6_1:74348798-74348817 None:intergenic 30.0%
ACAATTCTGATAGAGAACAT+AGG + chr6_1:74349013-74349032 Msa0892860:intron 30.0%
TAATATGAGATGATGTAGGA+GGG - chr6_1:74349296-74349315 None:intergenic 30.0%
TTAATATGAGATGATGTAGG+AGG - chr6_1:74349297-74349316 None:intergenic 30.0%
GAAGAATTGAGAACTGATAT+TGG + chr6_1:74349333-74349352 Msa0892860:CDS 30.0%
!!! GGTTTTAACTTTGCTTCTTT+TGG + chr6_1:74349384-74349403 Msa0892860:CDS 30.0%
! GTTTGAAATTTGAGTGAATG+TGG + chr6_1:74349693-74349712 Msa0892860:three_prime_UTR 30.0%
! GCCTTTTTCTTTCTCTTCAA+TGG + chr6_1:74343994-74344013 Msa0892860:five_prime_UTR 35.0%
!!! GAAAGAGAGATTTTTGGTTC+TGG + chr6_1:74344269-74344288 Msa0892860:CDS 35.0%
! TTTTGAGCTAAATTGAAGCC+AGG - chr6_1:74344323-74344342 None:intergenic 35.0%
TTTCCAACCTGAAAAATCTC+CGG - chr6_1:74344504-74344523 None:intergenic 35.0%
!!! GATTTTTCAGGTTGGAAAAG+TGG + chr6_1:74344506-74344525 Msa0892860:CDS 35.0%
!!! GCTATTTTTAGCCTTTGATC+TGG + chr6_1:74344634-74344653 Msa0892860:intron 35.0%
TGAAAGGGAATCTAAGCTAA+GGG - chr6_1:74344828-74344847 None:intergenic 35.0%
AAATTGAAGATGTGTGGTGT+TGG + chr6_1:74344854-74344873 Msa0892860:intron 35.0%
AATATCATTTACCCTCGTAG+AGG - chr6_1:74344964-74344983 None:intergenic 35.0%
TCTCAAATTATTAGCGGTGA+CGG - chr6_1:74345060-74345079 None:intergenic 35.0%
TGTCATGTCTAGTGTTTCAT+AGG + chr6_1:74345274-74345293 Msa0892860:intron 35.0%
! ATGAAGACGTTTCAAGTCAT+CGG + chr6_1:74345645-74345664 Msa0892860:intron 35.0%
!! GATAATGGAATATCACCCTT+CGG + chr6_1:74345898-74345917 Msa0892860:intron 35.0%
!!! GTTTTGAAATTGGAACCGAA+GGG - chr6_1:74345916-74345935 None:intergenic 35.0%
ATTAGATTAGGTCACCATCT+AGG - chr6_1:74346281-74346300 None:intergenic 35.0%
CATAATTCAGTATTTGTCGG+CGG - chr6_1:74346770-74346789 None:intergenic 35.0%
!! TAGAGAAATAGCATTGACAC+AGG + chr6_1:74346845-74346864 Msa0892860:intron 35.0%
AAGAGATGATAAACACGGAT+AGG + chr6_1:74347092-74347111 Msa0892860:intron 35.0%
AGAGATGATAAACACGGATA+GGG + chr6_1:74347093-74347112 Msa0892860:intron 35.0%
TTGGATATGAAGCATGAGAT+TGG + chr6_1:74347187-74347206 Msa0892860:intron 35.0%
ATGAAGCATGAGATTGGAAT+TGG + chr6_1:74347193-74347212 Msa0892860:intron 35.0%
ATTTAACACCAATGCATGTG+TGG + chr6_1:74347667-74347686 Msa0892860:intron 35.0%
GGTCATAAGCCATATTTACA+AGG - chr6_1:74347900-74347919 None:intergenic 35.0%
CATCTTTGATCTTAAGTGTC+GGG + chr6_1:74348043-74348062 Msa0892860:intron 35.0%
! ATCTTTGATCTTAAGTGTCG+GGG + chr6_1:74348044-74348063 Msa0892860:intron 35.0%
GTGAAGTTAGAGCAAGTTAA+TGG - chr6_1:74348181-74348200 None:intergenic 35.0%
TCATCTAGTGCTGTAATTAG+GGG - chr6_1:74348328-74348347 None:intergenic 35.0%
TTTGTCAATCCATTCTCAGT+TGG - chr6_1:74348436-74348455 None:intergenic 35.0%
GTTGTAGAAGGAAATAACAC+TGG + chr6_1:74348800-74348819 Msa0892860:intron 35.0%
TGATGCGTAAAACAATGAGA+GGG - chr6_1:74349198-74349217 None:intergenic 35.0%
AATATGAGATGATGTAGGAG+GGG - chr6_1:74349295-74349314 None:intergenic 35.0%
GAATTGAGAACTGATATTGG+TGG + chr6_1:74349336-74349355 Msa0892860:CDS 35.0%
! AACTTTGCTTCTTTTGGCAA+TGG + chr6_1:74349390-74349409 Msa0892860:CDS 35.0%
!! GGTTAAATGTAGCTCTGATA+TGG + chr6_1:74349609-74349628 Msa0892860:three_prime_UTR 35.0%
TGGTTGTAGCAAGTAGATTT+AGG + chr6_1:74349629-74349648 Msa0892860:three_prime_UTR 35.0%
GCATGCTGTTAATGTTAACC+AGG + chr6_1:74344292-74344311 Msa0892860:CDS 40.0%
CTTCCAGATTCACTCTTTCT+AGG - chr6_1:74344434-74344453 None:intergenic 40.0%
!!! TTTTCAGGTTGGAAAAGTGG+TGG + chr6_1:74344509-74344528 Msa0892860:CDS 40.0%
TGGTTTAGAAGTGGTATGTG+TGG + chr6_1:74344801-74344820 Msa0892860:intron 40.0%
CTGAAAGGGAATCTAAGCTA+AGG - chr6_1:74344829-74344848 None:intergenic 40.0%
CTGTCATAGTAATGTGAGGT+CGG + chr6_1:74344891-74344910 Msa0892860:intron 40.0%
TCGGAAATCGAGCTAATTGA+AGG + chr6_1:74344991-74345010 Msa0892860:intron 40.0%
CGGAAATCGAGCTAATTGAA+GGG + chr6_1:74344992-74345011 Msa0892860:intron 40.0%
TGTCTGTGCTTCATAGTTGA+AGG + chr6_1:74345164-74345183 Msa0892860:intron 40.0%
GTCTGTGCTTCATAGTTGAA+GGG + chr6_1:74345165-74345184 Msa0892860:intron 40.0%
ATAGGCAATAATTGTCCTGC+AGG + chr6_1:74345292-74345311 Msa0892860:intron 40.0%
CTGTGATGTGAAAAGGATGA+TGG + chr6_1:74345475-74345494 Msa0892860:intron 40.0%
!!! CGTTTTGAAATTGGAACCGA+AGG - chr6_1:74345917-74345936 None:intergenic 40.0%
!!! AAGCACGTGCGTTTTGAAAT+TGG - chr6_1:74345926-74345945 None:intergenic 40.0%
CACGTGCTTACTGTAAATTC+TGG + chr6_1:74345937-74345956 Msa0892860:CDS 40.0%
! GCTTACTGTAAATTCTGGAG+AGG + chr6_1:74345942-74345961 Msa0892860:CDS 40.0%
TATGTGCTGCCAGAAAAAAG+TGG + chr6_1:74346191-74346210 Msa0892860:intron 40.0%
!!! ATTGTCGGACCACTTTTTTC+TGG - chr6_1:74346203-74346222 None:intergenic 40.0%
! AAGTGGTCCGACAATTTTTG+TGG + chr6_1:74346208-74346227 Msa0892860:intron 40.0%
ATGGCAATTAACAGAGAGTG+TGG + chr6_1:74346247-74346266 Msa0892860:intron 40.0%
CTGAAGCATGAGATTGGAAT+TGG - chr6_1:74346419-74346438 None:intergenic 40.0%
! TCGTATCTGAAGCATGAGAT+TGG - chr6_1:74346425-74346444 None:intergenic 40.0%
TAGTAAGGAATAGCAATGGC+AGG - chr6_1:74346985-74347004 None:intergenic 40.0%
!! GTGACAACAATTGGCTCTAT+TGG + chr6_1:74347168-74347187 Msa0892860:intron 40.0%
ATGGCAATTAACAAAGGGCA+TGG - chr6_1:74347284-74347303 None:intergenic 40.0%
! ATTTTCCTCTGGCATGTTCT+AGG + chr6_1:74347430-74347449 Msa0892860:intron 40.0%
ATATCTATTCTGTCTGCGAC+TGG + chr6_1:74347500-74347519 Msa0892860:CDS 40.0%
CGTATAAACCACACATGCAT+TGG - chr6_1:74347678-74347697 None:intergenic 40.0%
TTGAATGTAACCACATGTGC+CGG + chr6_1:74347976-74347995 Msa0892860:intron 40.0%
GTCTAACATTGGTATGACAC+CGG - chr6_1:74347998-74348017 None:intergenic 40.0%
GCTACGTTGTATTGTACTTG+TGG + chr6_1:74348066-74348085 Msa0892860:intron 40.0%
CAACAATTCCCAAGGGAAAA+TGG + chr6_1:74348093-74348112 Msa0892860:intron 40.0%
GCTGTAATTAGGGGGAAAAA+TGG - chr6_1:74348319-74348338 None:intergenic 40.0%
CATCTAGTGCTGTAATTAGG+GGG - chr6_1:74348327-74348346 None:intergenic 40.0%
TTCGAGATTCTTTCCTTGAG+CGG + chr6_1:74348400-74348419 Msa0892860:CDS 40.0%
TCATTTGTGCCAACTGAGAA+TGG + chr6_1:74348424-74348443 Msa0892860:CDS 40.0%
TGGTAGAATGAGTGTCTCAT+TGG + chr6_1:74348465-74348484 Msa0892860:CDS 40.0%
! GTCCAAATGGTCGTGTTTTT+GGG + chr6_1:74348491-74348510 Msa0892860:CDS 40.0%
!! TCCAAATGGTCGTGTTTTTG+GGG + chr6_1:74348492-74348511 Msa0892860:CDS 40.0%
! TTTTCACAAGCTATGCAGCA+AGG - chr6_1:74348749-74348768 None:intergenic 40.0%
CTGATGCGTAAAACAATGAG+AGG - chr6_1:74349199-74349218 None:intergenic 40.0%
!! CTCTCATTGTTTTACGCATC+AGG + chr6_1:74349197-74349216 Msa0892860:intron 40.0%
!! TTGTTTTACGCATCAGGTTG+TGG + chr6_1:74349203-74349222 Msa0892860:intron 40.0%
!!! TGCGAGTTTTTTTCCAGAGA+AGG + chr6_1:74349227-74349246 Msa0892860:CDS 40.0%
AATGAAGCCTATCATGTCAC+CGG + chr6_1:74349359-74349378 Msa0892860:CDS 40.0%
CATGAGCATCTTAATGGCTA+GGG - chr6_1:74349465-74349484 None:intergenic 40.0%
GTCAAGCATGAGCATCTTAA+TGG - chr6_1:74349471-74349490 None:intergenic 40.0%
AGCTAAATTGAAGCCAGGTG+GGG - chr6_1:74344318-74344337 None:intergenic 45.0%
GAGCTAAATTGAAGCCAGGT+GGG - chr6_1:74344319-74344338 None:intergenic 45.0%
TGAGCTAAATTGAAGCCAGG+TGG - chr6_1:74344320-74344339 None:intergenic 45.0%
! TTGAATTTTGCTGGGTCCAC+TGG + chr6_1:74344347-74344366 Msa0892860:CDS 45.0%
TGTGGAGGTGAAGAAGAAGA+GGG + chr6_1:74344403-74344422 Msa0892860:CDS 45.0%
AGGCCTAGAAAGAGTGAATC+TGG + chr6_1:74344428-74344447 Msa0892860:CDS 45.0%
GAGTGAATCTGGAAGTAAGC+CGG + chr6_1:74344439-74344458 Msa0892860:CDS 45.0%
GTTGTCACCGATGCCAATTT+CGG + chr6_1:74344463-74344482 Msa0892860:CDS 45.0%
ATGGAAGCCGAAATTGGCAT+CGG - chr6_1:74344473-74344492 None:intergenic 45.0%
AACGGAATGGAAGCCGAAAT+TGG - chr6_1:74344479-74344498 None:intergenic 45.0%
AAAATCTCCGGTCAACGGAA+TGG - chr6_1:74344492-74344511 None:intergenic 45.0%
CCTGAAAAATCTCCGGTCAA+CGG - chr6_1:74344497-74344516 None:intergenic 45.0%
!!! TGACCGGAGATTTTTCAGGT+TGG + chr6_1:74344498-74344517 Msa0892860:CDS 45.0%
! TGAAGATGTGTGGTGTTGGA+AGG + chr6_1:74344858-74344877 Msa0892860:intron 45.0%
! GAAGATGTGTGGTGTTGGAA+GGG + chr6_1:74344859-74344878 Msa0892860:intron 45.0%
! AAGATGTGTGGTGTTGGAAG+GGG + chr6_1:74344860-74344879 Msa0892860:intron 45.0%
TGACACTCACACATCAACAC+CGG - chr6_1:74345259-74345278 None:intergenic 45.0%
TCTGTGTCTAATGCATCACC+TGG + chr6_1:74345673-74345692 Msa0892860:intron 45.0%
TGTTAAATGCCAGTTGTCGG+TGG + chr6_1:74346099-74346118 Msa0892860:intron 45.0%
GTTAAATGCCAGTTGTCGGT+GGG + chr6_1:74346100-74346119 Msa0892860:intron 45.0%
TTAAATGCCAGTTGTCGGTG+GGG + chr6_1:74346101-74346120 Msa0892860:intron 45.0%
TGGCAGCACATACAAAGAAG+GGG - chr6_1:74346183-74346202 None:intergenic 45.0%
CTGGCAGCACATACAAAGAA+GGG - chr6_1:74346184-74346203 None:intergenic 45.0%
TCTGGCAGCACATACAAAGA+AGG - chr6_1:74346185-74346204 None:intergenic 45.0%
! GCAATTAACAGAGAGTGTGG+TGG + chr6_1:74346250-74346269 Msa0892860:intron 45.0%
ATTAGGTCACCATCTAGGTC+TGG - chr6_1:74346276-74346295 None:intergenic 45.0%
GGAGTATGATTGAGTGAGTG+AGG - chr6_1:74346349-74346368 None:intergenic 45.0%
!! AATTTGCTGAGCAGTGGCAA+GGG - chr6_1:74346381-74346400 None:intergenic 45.0%
!! GAGAACAATTTGCTGAGCAG+TGG - chr6_1:74346387-74346406 None:intergenic 45.0%
!! GAAGAGAATAGCATTGACGC+AGG - chr6_1:74346690-74346709 None:intergenic 45.0%
AGGAATAGCAATGGCAGGTT+TGG - chr6_1:74346980-74346999 None:intergenic 45.0%
! GCAATTAACAAAGGGCATGG+CGG - chr6_1:74347281-74347300 None:intergenic 45.0%
GAATGTAACACTTCGCCAGT+CGG + chr6_1:74347532-74347551 Msa0892860:CDS 45.0%
TGGCGGTACTTCAACATATG+AGG + chr6_1:74347562-74347581 Msa0892860:CDS 45.0%
ACAAACACATTCACCGACAC+AGG + chr6_1:74347928-74347947 Msa0892860:intron 45.0%
CACGTGTCTGTGTCTAACAT+TGG - chr6_1:74348009-74348028 None:intergenic 45.0%
TGTTAGACACAGACACGTGT+TGG + chr6_1:74348010-74348029 Msa0892860:intron 45.0%
TGGCATGCAACAATTCCCAA+GGG + chr6_1:74348086-74348105 Msa0892860:intron 45.0%
GGATTGACAAAGAGCAGATC+TGG + chr6_1:74348445-74348464 Msa0892860:CDS 45.0%
AGAATGAGTGTCTCATTGGC+AGG + chr6_1:74348469-74348488 Msa0892860:CDS 45.0%
! GGTCCAAATGGTCGTGTTTT+TGG + chr6_1:74348490-74348509 Msa0892860:CDS 45.0%
!!! CCAAATGGTCGTGTTTTTGG+GGG + chr6_1:74348493-74348512 Msa0892860:CDS 45.0%
!! TGAACTATGAAGCACTGACG+TGG + chr6_1:74348604-74348623 Msa0892860:intron 45.0%
! GTTCAGATTGAAGGCGTGTT+CGG - chr6_1:74348723-74348742 None:intergenic 45.0%
GCAAGGACAGTTCAGATTGA+AGG - chr6_1:74348732-74348751 None:intergenic 45.0%
!! ACACTGGTGCTGATTGATGA+TGG + chr6_1:74348816-74348835 Msa0892860:intron 45.0%
!! GGTGCTGATTGATGATGGTA+AGG + chr6_1:74348821-74348840 Msa0892860:intron 45.0%
CTCTTTGGATTCTCCTTCTC+TGG - chr6_1:74349243-74349262 None:intergenic 45.0%
CAGAGAAGGAGAATCCAAAG+AGG + chr6_1:74349241-74349260 Msa0892860:CDS 45.0%
GAAGCAAAGTTAAAACCGGC+CGG - chr6_1:74349381-74349400 None:intergenic 45.0%
TGGCAACTCATCATCATCTG+CGG + chr6_1:74349422-74349441 Msa0892860:CDS 45.0%
GCATGAGCATCTTAATGGCT+AGG - chr6_1:74349466-74349485 None:intergenic 45.0%
!!! AATATCATATATTTTAAAAA+GGG - chr6_1:74346159-74346178 None:intergenic 5.0%
!!! AAATATCATATATTTTAAAA+AGG - chr6_1:74346160-74346179 None:intergenic 5.0%
GTGTGGAGGTGAAGAAGAAG+AGG + chr6_1:74344402-74344421 Msa0892860:CDS 50.0%
GTGGAGGTGAAGAAGAAGAG+GGG + chr6_1:74344404-74344423 Msa0892860:CDS 50.0%
! CCGTTGACCGGAGATTTTTC+AGG + chr6_1:74344494-74344513 Msa0892860:CDS 50.0%
!! TCAGGTTGGAAAAGTGGTGG+TGG + chr6_1:74344512-74344531 Msa0892860:CDS 50.0%
ACACGACACATGTCCGATAC+CGG + chr6_1:74345121-74345140 Msa0892860:intron 50.0%
GCACAGACACTCCTCAGATA+AGG - chr6_1:74345153-74345172 None:intergenic 50.0%
!! CAATTTGCTGAGCAGTGGCA+AGG - chr6_1:74346382-74346401 None:intergenic 50.0%
AGAAACCGGTGGCAAGAGAA+AGG + chr6_1:74347250-74347269 Msa0892860:intron 50.0%
GAAACCGGTGGCAAGAGAAA+GGG + chr6_1:74347251-74347270 Msa0892860:intron 50.0%
CAATCCCTTTCTCTTGCCAC+CGG - chr6_1:74347258-74347277 None:intergenic 50.0%
GACATCCTAGAACATGCCAG+AGG - chr6_1:74347438-74347457 None:intergenic 50.0%
GTGGCATGCAACAATTCCCA+AGG + chr6_1:74348085-74348104 Msa0892860:intron 50.0%
GTCTCATTGGCAGGTCCAAA+TGG + chr6_1:74348478-74348497 Msa0892860:CDS 50.0%
CCCCCAAAAACACGACCATT+TGG - chr6_1:74348496-74348515 None:intergenic 50.0%
!! ATGAAGCACTGACGTGGACA+TGG + chr6_1:74348610-74348629 Msa0892860:intron 50.0%
AGGAGAATCCAAAGAGGCAG+AGG + chr6_1:74349247-74349266 Msa0892860:CDS 50.0%
GGAGAATCCAAAGAGGCAGA+GGG + chr6_1:74349248-74349267 Msa0892860:CDS 50.0%
! GCTTCTTTTGGCAATGGCCA+AGG + chr6_1:74349396-74349415 Msa0892860:CDS 50.0%
ATGATGAGTTGCCAGAGCCT+TGG - chr6_1:74349416-74349435 None:intergenic 50.0%
AATGTTAACCAGGCCCCACC+TGG + chr6_1:74344302-74344321 Msa0892860:CDS 55.0%
TGGGTCCACTGGAGAGTTAC+CGG + chr6_1:74344358-74344377 Msa0892860:CDS 55.0%
CTTCTTCACCTCCACACCAC+CGG - chr6_1:74344399-74344418 None:intergenic 55.0%
AGGTGAAGAAGAAGAGGGGC+AGG + chr6_1:74344408-74344427 Msa0892860:CDS 55.0%
!! ATTGGCATCGGTGACAACGC+CGG - chr6_1:74344461-74344480 None:intergenic 55.0%
TCGGCTTCCATTCCGTTGAC+CGG + chr6_1:74344482-74344501 Msa0892860:CDS 55.0%
!! GGTTGGAAAAGTGGTGGTGG+TGG + chr6_1:74344515-74344534 Msa0892860:CDS 55.0%
!! TGGAAAAGTGGTGGTGGTGG+AGG + chr6_1:74344518-74344537 Msa0892860:CDS 55.0%
!! AAAAGTGGTGGTGGTGGAGG+TGG + chr6_1:74344521-74344540 Msa0892860:CDS 55.0%
CACGAACACCAGACACGACA+CGG + chr6_1:74345023-74345042 Msa0892860:intron 55.0%
GTCAATGTCCGTGTCGTGTC+TGG - chr6_1:74345034-74345053 None:intergenic 55.0%
CACGACACATGTCCGATACC+GGG + chr6_1:74345122-74345141 Msa0892860:intron 55.0%
GATAAGGCGTGTCCCGGTAT+CGG - chr6_1:74345137-74345156 None:intergenic 55.0%
TCCTCAGATAAGGCGTGTCC+CGG - chr6_1:74345143-74345162 None:intergenic 55.0%
TGAGCAGTGGCAAGGGAAAG+GGG - chr6_1:74346374-74346393 None:intergenic 55.0%
CTGAGCAGTGGCAAGGGAAA+GGG - chr6_1:74346375-74346394 None:intergenic 55.0%
TGGTATGACACCGGCACATG+TGG - chr6_1:74347989-74348008 None:intergenic 55.0%
TGGCACAAATGAGCCGCTCA+AGG - chr6_1:74348416-74348435 None:intergenic 55.0%
!!! TCGTGTTTTTGGGGGTGCAC+TGG + chr6_1:74348501-74348520 Msa0892860:CDS 55.0%
CACTGACGTGGACATGGACA+CGG + chr6_1:74348616-74348635 Msa0892860:intron 55.0%
ACTGACGTGGACATGGACAC+GGG + chr6_1:74348617-74348636 Msa0892860:intron 55.0%
TGATCGACCCTCTGCCTCTT+TGG - chr6_1:74349258-74349277 None:intergenic 55.0%
GAGGCAGAGGGTCGATCATT+CGG + chr6_1:74349260-74349279 Msa0892860:CDS 55.0%
GATGATGTAGGAGGGGCAGT+TGG - chr6_1:74349288-74349307 None:intergenic 55.0%
AAGCCTATCATGTCACCGGC+CGG + chr6_1:74349363-74349382 Msa0892860:CDS 55.0%
AAACCGGCCGGTGACATGAT+AGG - chr6_1:74349369-74349388 None:intergenic 55.0%
TTTGGCAATGGCCAAGGCTC+TGG + chr6_1:74349402-74349421 Msa0892860:CDS 55.0%
AATTGAAGCCAGGTGGGGCC+TGG - chr6_1:74344313-74344332 None:intergenic 60.0%
!! CACTGGAGAGTTACCGGCTC+CGG + chr6_1:74344364-74344383 Msa0892860:CDS 60.0%
ACCGGGACACGCCTTATCTG+AGG + chr6_1:74345139-74345158 Msa0892860:intron 60.0%
ATGCCAGTTGTCGGTGGGGT+TGG + chr6_1:74346105-74346124 Msa0892860:intron 60.0%
GTGTGGTGGCCAGACCTAGA+TGG + chr6_1:74346264-74346283 Msa0892860:intron 60.0%
CAGTGGCAAGGGAAAGGGGT+TGG - chr6_1:74346370-74346389 None:intergenic 60.0%
GCTGAGCAGTGGCAAGGGAA+AGG - chr6_1:74346376-74346395 None:intergenic 60.0%
CTTCGCCAGTCGGATGCTTG+TGG + chr6_1:74347542-74347561 Msa0892860:CDS 60.0%
TACCGCCACAAGCATCCGAC+TGG - chr6_1:74347550-74347569 None:intergenic 60.0%
!! GTTTTTGGGGGTGCACTGGC+TGG + chr6_1:74348505-74348524 Msa0892860:CDS 60.0%
!! GCTGGTTTGCTGGTAGCTGC+TGG + chr6_1:74348523-74348542 Msa0892860:CDS 60.0%
!! GGTAGCTGCTGGTTCTGTGC+AGG + chr6_1:74348534-74348553 Msa0892860:CDS 60.0%
CGGAGCCGGTAACTCTCCAG+TGG - chr6_1:74344366-74344385 None:intergenic 65.0%
!! AGAGTTACCGGCTCCGGTGC+CGG + chr6_1:74344370-74344389 Msa0892860:CDS 65.0%
!! AGTGGTGGTGGTGGAGGTGG+AGG + chr6_1:74344524-74344543 Msa0892860:CDS 65.0%
GGACCAACCCCACCGACAAC+TGG - chr6_1:74346111-74346130 None:intergenic 65.0%
CGCCAGTCGGATGCTTGTGG+CGG + chr6_1:74347545-74347564 Msa0892860:CDS 65.0%
!! GGGTGCACTGGCTGGTTTGC+TGG + chr6_1:74348513-74348532 Msa0892860:CDS 65.0%
ACCTCCACACCACCGGCAGC+CGG - chr6_1:74344392-74344411 None:intergenic 70.0%
!! TGTCGGTGGGGTTGGTCCCC+CGG + chr6_1:74346113-74346132 Msa0892860:intron 70.0%
ACACCACCGGCAGCCGGCAC+CGG - chr6_1:74344386-74344405 None:intergenic 75.0%
!!! GGTGCCGGCTGCCGGTGGTG+TGG + chr6_1:74344385-74344404 Msa0892860:CDS 80.0%
! GCCGGCTGCCGGTGGTGTGG+AGG + chr6_1:74344388-74344407 Msa0892860:CDS 80.0%
!! CCGGCAGCCGGCACCGGAGC+CGG - chr6_1:74344380-74344399 None:intergenic 85.0%
!!! CCGGCTCCGGTGCCGGCTGC+CGG + chr6_1:74344377-74344396 Msa0892860:CDS 85.0%
!!! GCTCCGGTGCCGGCTGCCGG+TGG + chr6_1:74344380-74344399 Msa0892860:CDS 85.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 74343883 74349788 74343883 ID=Msa0892860;Name=Msa0892860
chr6_1 mRNA 74343883 74349788 74343883 ID=Msa0892860-mRNA-1;Parent=Msa0892860;Name=Msa0892860-mRNA-1;_AED=0.17;_eAED=0.17;_QI=380|1|1|1|1|1|5|327|314
chr6_1 exon 74343883 74344605 74343883 ID=Msa0892860-mRNA-1:exon:12645;Parent=Msa0892860-mRNA-1
chr6_1 exon 74345899 74345963 74345899 ID=Msa0892860-mRNA-1:exon:12646;Parent=Msa0892860-mRNA-1
chr6_1 exon 74347452 74347583 74347452 ID=Msa0892860-mRNA-1:exon:12647;Parent=Msa0892860-mRNA-1
chr6_1 exon 74348394 74348555 74348394 ID=Msa0892860-mRNA-1:exon:12648;Parent=Msa0892860-mRNA-1
chr6_1 exon 74349219 74349788 74349219 ID=Msa0892860-mRNA-1:exon:12649;Parent=Msa0892860-mRNA-1
chr6_1 five_prime_UTR 74343883 74344262 74343883 ID=Msa0892860-mRNA-1:five_prime_utr;Parent=Msa0892860-mRNA-1
chr6_1 CDS 74344263 74344605 74344263 ID=Msa0892860-mRNA-1:cds;Parent=Msa0892860-mRNA-1
chr6_1 CDS 74345899 74345963 74345899 ID=Msa0892860-mRNA-1:cds;Parent=Msa0892860-mRNA-1
chr6_1 CDS 74347452 74347583 74347452 ID=Msa0892860-mRNA-1:cds;Parent=Msa0892860-mRNA-1
chr6_1 CDS 74348394 74348555 74348394 ID=Msa0892860-mRNA-1:cds;Parent=Msa0892860-mRNA-1
chr6_1 CDS 74349219 74349461 74349219 ID=Msa0892860-mRNA-1:cds;Parent=Msa0892860-mRNA-1
chr6_1 three_prime_UTR 74349462 74349788 74349462 ID=Msa0892860-mRNA-1:three_prime_utr;Parent=Msa0892860-mRNA-1
Gene Sequence

>Msa0892860

ATGGAAGAAAGAGAGATTTTTGGTTCTGGGCATGCTGTTAATGTTAACCAGGCCCCACCTGGCTTCAATTTAGCTCAAAATACGTTGAATTTTGCTGGGTCCACTGGAGAGTTACCGGCTCCGGTGCCGGCTGCCGGTGGTGTGGAGGTGAAGAAGAAGAGGGGCAGGCCTAGAAAGAGTGAATCTGGAAGTAAGCCGGCGTTGTCACCGATGCCAATTTCGGCTTCCATTCCGTTGACCGGAGATTTTTCAGGTTGGAAAAGTGGTGGTGGTGGAGGTGGAGGTGTAGTGAAGCCATTTGAATCAATTAAGAAGCCTTTGAAGTTGAATGATTTTGATGAAGATAATGGAATATCACCCTTCGGTTCCAATTTCAAAACGCACGTGCTTACTGTAAATTCTGGAGAGGATGTCTCGATGAAAATAATGTCTCTTTCTCAACAAGAATATCATACTATATCTATTCTGTCTGCGACTGGCACAATTTCGAATGTAACACTTCGCCAGTCGGATGCTTGTGGCGGTACTTCAACATATGAGGGAGTTTTCGAGATTCTTTCCTTGAGCGGCTCATTTGTGCCAACTGAGAATGGATTGACAAAGAGCAGATCTGGTAGAATGAGTGTCTCATTGGCAGGTCCAAATGGTCGTGTTTTTGGGGGTGCACTGGCTGGTTTGCTGGTAGCTGCTGGTTCTGTGCAGGTTGTGGTTGCGAGTTTTTTTCCAGAGAAGGAGAATCCAAAGAGGCAGAGGGTCGATCATTCGGCACCAACTGCCCCTCCTACATCATCTCATATTAATAATCATGTTTCTTCCGAAGAATTGAGAACTGATATTGGTGGAATGAAGCCTATCATGTCACCGGCCGGTTTTAACTTTGCTTCTTTTGGCAATGGCCAAGGCTCTGGCAACTCATCATCATCTGCGGATGATGAGCATGTCTAA
Protein sequence

>Msa0892860

MEEREIFGSGHAVNVNQAPPGFNLAQNTLNFAGSTGELPAPVPAAGGVEVKKKRGRPRKSESGSKPALSPMPISASIPLTGDFSGWKSGGGGGGGVVKPFESIKKPLKLNDFDEDNGISPFGSNFKTHVLTVNSGEDVSMKIMSLSQQEYHTISILSATGTISNVTLRQSDACGGTSTYEGVFEILSLSGSFVPTENGLTKSRSGRMSVSLAGPNGRVFGGALAGLLVAAGSVQVVVASFFPEKENPKRQRVDHSAPTAPPTSSHINNHVSSEELRTDIGGMKPIMSPAGFNFASFGNGQGSGNSSSSADDEHV*