AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0006050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006050 MtrunA17_Chr1g0150061 98.305 236 4 0 1 236 1 236 1.45e-171 471
Msa0006050 MtrunA17_Chr8g0386721 72.289 166 46 0 71 236 2 167 1.21e-86 254
Msa0006050 MtrunA17_Chr8g0391921 66.667 162 54 0 75 236 63 224 6.40e-79 236
Msa0006050 MtrunA17_Chr7g0259611 62.424 165 62 0 71 235 4 168 4.47e-76 227
Msa0006050 MtrunA17_Chr8g0386731 63.750 160 58 0 77 236 12 171 3.18e-73 220
Msa0006050 MtrunA17_Chr1g0185791 53.659 164 75 1 72 234 5 168 2.39e-63 195
Msa0006050 MtrunA17_Chr5g0397561 56.250 160 69 1 77 235 10 169 9.45e-61 188
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006050 AT2G25080.1 69.406 219 66 1 18 236 19 236 7.08e-108 310
Msa0006050 AT4G31870.1 67.100 231 75 1 6 236 4 233 3.89e-105 303
Msa0006050 AT4G11600.1 74.214 159 41 0 77 235 71 229 3.67e-85 253
Msa0006050 AT2G43350.2 68.553 159 50 0 78 236 47 205 7.83e-78 233
Msa0006050 AT2G43350.1 68.553 159 50 0 78 236 47 205 7.83e-78 233
Msa0006050 AT2G31570.1 67.296 159 52 0 77 235 7 165 4.29e-77 230
Msa0006050 AT1G63460.1 60.759 158 62 0 77 234 7 164 1.00e-72 219
Msa0006050 AT3G63080.1 61.146 157 61 0 79 235 14 170 2.01e-68 208
Msa0006050 AT2G48150.1 56.790 162 70 0 73 234 6 167 3.39e-66 202
Msa0006050 AT2G48150.2 58.865 141 58 0 94 234 1 141 3.10e-59 184
Msa0006050 AT4G31870.2 55.660 106 46 1 31 136 29 133 5.37e-30 110

Find 53 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCGAACCTTATCGAAAAT+TGG 0.207954 1_1:-8835500 None:intergenic
AACTGTACTTCCAAAATTAT+TGG 0.223112 1_1:-8832432 None:intergenic
GTAGAACAGGTTGATGTAAA+TGG 0.227839 1_1:+8835585 Msa0006050:intron
CTGAAATTTAACGAAAATTC+TGG 0.260514 1_1:-8836270 None:intergenic
GCTTTCCCTTGCAATCAATT+TGG 0.263308 1_1:+8835410 Msa0006050:CDS
CTTGACAGTAAAATCATAAA+TGG 0.263502 1_1:-8832752 None:intergenic
ACAGTCTCTGCCACACAAAA+TGG 0.301072 1_1:+8832501 Msa0006050:intron
TACTTGCTGCGTGAAAATTC+AGG 0.343485 1_1:+8836072 Msa0006050:exon
AAAGGGAAAGTGTTCATATA+TGG 0.355645 1_1:+8836247 Msa0006050:three_prime_UTR
TTCACGCAGCAAGTAACTTC+TGG 0.359704 1_1:-8836064 None:intergenic
TCTATAGTGTAGTAGTGAAT+AGG 0.364533 1_1:-8836192 None:intergenic
CAGTTTCTGAAGTCAAGTTC+TGG 0.365037 1_1:+8835630 Msa0006050:CDS
GACTTCAGAAACTGGTATAC+TGG 0.374167 1_1:-8835621 None:intergenic
TTAATTTCTTCATTTGATCC+AGG 0.410664 1_1:-8835443 None:intergenic
TGGTATACTGGAGCAGTAAA+TGG 0.415807 1_1:-8835609 None:intergenic
TTAGACTTCAAAACAGCCTT+AGG 0.415949 1_1:-8832691 None:intergenic
TACTATGCTTTATCACTAAA+GGG 0.419009 1_1:+8836230 Msa0006050:three_prime_UTR
CAGAACTTGACTTCAGAAAC+TGG 0.419102 1_1:-8835629 None:intergenic
GTACTATGCTTTATCACTAA+AGG 0.423758 1_1:+8836229 Msa0006050:three_prime_UTR
TGTTATATTGCGATGCTTGA+TGG 0.424373 1_1:-8832456 None:intergenic
ATTTATATTCAAAAGTTTGA+AGG 0.429700 1_1:-8836325 None:intergenic
TATGGATAATACAATATTTG+TGG 0.433238 1_1:-8832401 None:intergenic
ATGGATAATACAATATTTGT+GGG 0.434801 1_1:-8832400 None:intergenic
TAACATACCTCAATTTGAAA+AGG 0.452584 1_1:-8835747 None:intergenic
TTGCAATCAATTTGGCATGC+AGG 0.453941 1_1:+8835418 Msa0006050:CDS
ATTTGAAAAGGAGAGGTTGT+TGG 0.461689 1_1:-8835735 None:intergenic
CAATTTGGCATGCAGGAGCC+TGG 0.464234 1_1:+8835425 Msa0006050:CDS
ACAAAAGGCAAAGAAATTGA+AGG 0.466437 1_1:-8832595 None:intergenic
TTCCCCTTGAATTTGCTAAG+AGG 0.483787 1_1:-8833530 None:intergenic
TGTGCCTCTTAGCAAATTCA+AGG 0.492645 1_1:+8833526 Msa0006050:CDS
GCCACACAAAATGGTTTCCA+TGG 0.508212 1_1:+8832510 Msa0006050:exon
TGAAAAGGAGAGGTTGTTGG+TGG 0.511106 1_1:-8835732 None:intergenic
AAGAGGTGTGAAGAAGGTTG+TGG 0.519675 1_1:-8832539 None:intergenic
TGCATGCCAAATTGATTGCA+AGG 0.530005 1_1:-8835416 None:intergenic
TTAAGAAATTTGCTTGCACT+AGG 0.553262 1_1:+8835462 Msa0006050:CDS
ATCAGAGGCATGCTTGTACA+AGG 0.558429 1_1:+8836105 Msa0006050:three_prime_UTR
GAAAAGGAGAGGTTGTTGGT+GGG 0.561717 1_1:-8835731 None:intergenic
TTAGGAAAATCGAAAGAGGT+TGG 0.563898 1_1:-8832673 None:intergenic
TACCTCAATTTGAAAAGGAG+AGG 0.573842 1_1:-8835742 None:intergenic
GAAGGTTGTGGAAGAAGCCA+TGG 0.574467 1_1:-8832527 None:intergenic
TTCTGAAGTCAAGTTCTGGA+GGG 0.576508 1_1:+8835634 Msa0006050:CDS
TCTTAGCAAATTCAAGGGGA+AGG 0.578922 1_1:+8833532 Msa0006050:CDS
TTGTCAATGTTGCTTCAAGA+TGG 0.580677 1_1:+8833564 Msa0006050:CDS
GGTGCAGGATATTGATAAGA+AGG 0.588234 1_1:+8833502 Msa0006050:intron
TTTCTGAAGTCAAGTTCTGG+AGG 0.598538 1_1:+8835633 Msa0006050:CDS
AGCCTTAGGAAAATCGAAAG+AGG 0.607348 1_1:-8832677 None:intergenic
GCATGCCAAATTGATTGCAA+GGG 0.608481 1_1:-8835415 None:intergenic
ATTGTGAAGAGGTGTGAAGA+AGG 0.611184 1_1:-8832545 None:intergenic
GTGCCTCTTAGCAAATTCAA+GGG 0.611835 1_1:+8833527 Msa0006050:CDS
TCAGGAATGAGCAAAATCAG+AGG 0.660022 1_1:+8836090 Msa0006050:three_prime_UTR
GCTTGATTGAAATTGTGAAG+AGG 0.664846 1_1:-8832556 None:intergenic
TGCCTCTTAGCAAATTCAAG+GGG 0.679239 1_1:+8833528 Msa0006050:CDS
TTTGACATCATCAAACTACA+CGG 0.712985 1_1:+8834210 Msa0006050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAGCAAAAAAATATTTT+AGG - chr1_1:8836007-8836026 None:intergenic 10.0%
!!! AAATTATTGGTATGTTTTTA+TGG - chr1_1:8832422-8832441 None:intergenic 15.0%
!!! TAAAAACATACCAATAATTT+TGG + chr1_1:8832422-8832441 Msa0006050:five_prime_UTR 15.0%
!!! GATAATTTGTTAATATGTAT+AGG + chr1_1:8832829-8832848 Msa0006050:intron 15.0%
!! AAGCTGTTTATAATATATAA+CGG + chr1_1:8833057-8833076 Msa0006050:intron 15.0%
!! GAAAGAAAAGAAAAAAAAAA+GGG - chr1_1:8833624-8833643 None:intergenic 15.0%
!! TGAAAGAAAAGAAAAAAAAA+AGG - chr1_1:8833625-8833644 None:intergenic 15.0%
!!! TATGAAAATTTTAAAGACAA+AGG + chr1_1:8834247-8834266 Msa0006050:CDS 15.0%
!! TTTAAAAATCATATCTCTAT+AGG + chr1_1:8834619-8834638 Msa0006050:intron 15.0%
!! AAACATAAAAGTGAAAAATT+AGG + chr1_1:8835008-8835027 Msa0006050:intron 15.0%
!! ATTTATATTCAAAAGTTTGA+AGG - chr1_1:8836328-8836347 None:intergenic 15.0%
!! ATGGATAATACAATATTTGT+GGG - chr1_1:8832403-8832422 None:intergenic 20.0%
!! TATGGATAATACAATATTTG+TGG - chr1_1:8832404-8832423 None:intergenic 20.0%
!!! TATTTCTAGCTTATTGTATA+AGG + chr1_1:8832872-8832891 Msa0006050:intron 20.0%
!!! ATTTCTAGCTTATTGTATAA+GGG + chr1_1:8832873-8832892 Msa0006050:intron 20.0%
!! TTTATCATGATAAGTGTTTA+TGG + chr1_1:8832896-8832915 Msa0006050:intron 20.0%
!!! TGTTGTTTTCATAAACTATT+TGG + chr1_1:8832959-8832978 Msa0006050:intron 20.0%
!!! GTTGTTTTCATAAACTATTT+GGG + chr1_1:8832960-8832979 Msa0006050:intron 20.0%
!! CATAAGTTGTTTATTATGAT+AGG + chr1_1:8833024-8833043 Msa0006050:intron 20.0%
!!! TTTTTCTTCAATTCCAAAAA+AGG - chr1_1:8833438-8833457 None:intergenic 20.0%
!! ATGATCATGTTATTATTATG+TGG + chr1_1:8833481-8833500 Msa0006050:intron 20.0%
!! ATACACTTTATATTTGTGTT+TGG + chr1_1:8833598-8833617 Msa0006050:intron 20.0%
!! TTTCTTTCAATTGTAATGTT+CGG + chr1_1:8833636-8833655 Msa0006050:intron 20.0%
!! ATTAAGTATGCTTAAACAAA+TGG + chr1_1:8833690-8833709 Msa0006050:intron 20.0%
!!! ATTTTTGTATAACAAACTAG+AGG - chr1_1:8833935-8833954 None:intergenic 20.0%
!!! ATATCTTTTATTATGACTGT+TGG + chr1_1:8834310-8834329 Msa0006050:intron 20.0%
!! TTTCCAAATAAAGATATGTT+TGG - chr1_1:8834645-8834664 None:intergenic 20.0%
!!! AAACACATGCATTTTATTTT+AGG - chr1_1:8834828-8834847 None:intergenic 20.0%
!! TTAATATCCTAAATTGCAAA+TGG - chr1_1:8834910-8834929 None:intergenic 20.0%
!! ATAAAAGTGAAAAATTAGGT+AGG + chr1_1:8835012-8835031 Msa0006050:intron 20.0%
!! TAAAAGTGAAAAATTAGGTA+GGG + chr1_1:8835013-8835032 Msa0006050:intron 20.0%
!!! CTTGTTTTGTTTTGTAATTT+GGG + chr1_1:8835080-8835099 Msa0006050:intron 20.0%
!!! TTGTTTTGTTTTGTAATTTG+GGG + chr1_1:8835081-8835100 Msa0006050:intron 20.0%
!!! TTTTTGTTCAGTTACTTTTA+GGG - chr1_1:8835167-8835186 None:intergenic 20.0%
!!! ATTTTTGTTCAGTTACTTTT+AGG - chr1_1:8835168-8835187 None:intergenic 20.0%
!!! TTGCATTTTGATTACAATTT+TGG + chr1_1:8835196-8835215 Msa0006050:intron 20.0%
!!! AGTCTAACTTCTAATTTTTA+TGG + chr1_1:8835790-8835809 Msa0006050:intron 20.0%
!! CAATGAATTATTAACTAGTT+AGG + chr1_1:8835816-8835835 Msa0006050:intron 20.0%
! AACTGTACTTCCAAAATTAT+TGG - chr1_1:8832435-8832454 None:intergenic 25.0%
!!! AAATCACCTTTTTTTCAACA+TGG + chr1_1:8832640-8832659 Msa0006050:CDS 25.0%
! CTTGACAGTAAAATCATAAA+TGG - chr1_1:8832755-8832774 None:intergenic 25.0%
!! CATTTATGATTTTACTGTCA+AGG + chr1_1:8832753-8832772 Msa0006050:CDS 25.0%
! TAATATGTATAGGTCATGTT+TGG + chr1_1:8832839-8832858 Msa0006050:intron 25.0%
! AAAAAAATAGCCAATCCAAA+CGG - chr1_1:8833156-8833175 None:intergenic 25.0%
! TATTATTCATAAGCTTGTCA+AGG + chr1_1:8833214-8833233 Msa0006050:intron 25.0%
! TTCTTTCAATTGTAATGTTC+GGG + chr1_1:8833637-8833656 Msa0006050:intron 25.0%
!!! AAACAAATGGTTCTAAATTG+CGG + chr1_1:8833703-8833722 Msa0006050:intron 25.0%
!!! AGTTTTAGAAGTTTATGATG+TGG + chr1_1:8833749-8833768 Msa0006050:intron 25.0%
! TATTCAAGAACAGTAAAACA+AGG - chr1_1:8833814-8833833 None:intergenic 25.0%
! TTGTTATACAAAAATCGAGT+CGG + chr1_1:8833940-8833959 Msa0006050:intron 25.0%
!! TATCCTGTATAAGATTTGTT+GGG + chr1_1:8834435-8834454 Msa0006050:intron 25.0%
!!! GTTATTGGTATTTTTAGATG+TGG + chr1_1:8834504-8834523 Msa0006050:intron 25.0%
! AAAAAAAAAAGTTGACCAAC+TGG + chr1_1:8834577-8834596 Msa0006050:intron 25.0%
! AAAAAAAAAGTTGACCAACT+GGG + chr1_1:8834578-8834597 Msa0006050:intron 25.0%
!! ATCTTTATTTGGAAAGCTAT+TGG + chr1_1:8834650-8834669 Msa0006050:intron 25.0%
! TCAAAATGTGTTTGTCAATT+GGG - chr1_1:8834721-8834740 None:intergenic 25.0%
! TTCAAAATGTGTTTGTCAAT+TGG - chr1_1:8834722-8834741 None:intergenic 25.0%
!!! ATTTAGGATATTAACTTGTC+TGG + chr1_1:8834916-8834935 Msa0006050:intron 25.0%
! AAAAGTGAAAAATTAGGTAG+GGG + chr1_1:8835014-8835033 Msa0006050:intron 25.0%
! CCAAATTACAAAACAAAACA+AGG - chr1_1:8835082-8835101 None:intergenic 25.0%
!!! CCTTGTTTTGTTTTGTAATT+TGG + chr1_1:8835079-8835098 Msa0006050:intron 25.0%
!!! TTTTGTTCAGTTACTTTTAG+GGG - chr1_1:8835166-8835185 None:intergenic 25.0%
! TTAATTTCTTCATTTGATCC+AGG - chr1_1:8835446-8835465 None:intergenic 25.0%
!! AGAATTTCCAATTTTCGATA+AGG + chr1_1:8835493-8835512 Msa0006050:CDS 25.0%
! AAATTCTTGGTCGATAAAAA+TGG + chr1_1:8835690-8835709 Msa0006050:CDS 25.0%
! TAACATACCTCAATTTGAAA+AGG - chr1_1:8835750-8835769 None:intergenic 25.0%
!! CTAACTTCTAATTTTTATGG+TGG + chr1_1:8835793-8835812 Msa0006050:intron 25.0%
! AAATTACATTGACATACTTG+AGG - chr1_1:8835847-8835866 None:intergenic 25.0%
!! AGTATGTCAATGTAATTTTC+CGG + chr1_1:8835849-8835868 Msa0006050:intron 25.0%
! TAAGCTGTATTTGATTACAT+CGG + chr1_1:8835961-8835980 Msa0006050:intron 25.0%
! TACTATGCTTTATCACTAAA+GGG + chr1_1:8836230-8836249 Msa0006050:three_prime_UTR 25.0%
! CTGAAATTTAACGAAAATTC+TGG - chr1_1:8836273-8836292 None:intergenic 25.0%
ACAAAAGGCAAAGAAATTGA+AGG - chr1_1:8832598-8832617 None:intergenic 30.0%
! GCAATTGAGGATTTTACAAA+AGG - chr1_1:8832613-8832632 None:intergenic 30.0%
!! TGATTTTGAAGAAGCAATTG+AGG - chr1_1:8832626-8832645 None:intergenic 30.0%
GAAAAGCCATGTTGAAAAAA+AGG - chr1_1:8832649-8832668 None:intergenic 30.0%
ATAAGCTATCTTGAAGAACA+GGG + chr1_1:8833130-8833149 Msa0006050:intron 30.0%
ATGTTATTATTATGTGGTGC+AGG + chr1_1:8833487-8833506 Msa0006050:intron 30.0%
!! AAAGTGATGGTTCTAAATTG+CGG - chr1_1:8833866-8833885 None:intergenic 30.0%
TTAGAGTAATGAGAAAGTGA+TGG - chr1_1:8833879-8833898 None:intergenic 30.0%
! ATTAGACCTTTTCAAATAGC+AGG - chr1_1:8834114-8834133 None:intergenic 30.0%
GAAAGTTATGTCAAAGTTTC+TGG + chr1_1:8834144-8834163 Msa0006050:intron 30.0%
TTTGACATCATCAAACTACA+CGG + chr1_1:8834210-8834229 Msa0006050:CDS 30.0%
! AGACAAAGGTACATTACTTA+TGG + chr1_1:8834261-8834280 Msa0006050:intron 30.0%
! GACAAAGGTACATTACTTAT+GGG + chr1_1:8834262-8834281 Msa0006050:intron 30.0%
! ACAAAGGTACATTACTTATG+GGG + chr1_1:8834263-8834282 Msa0006050:intron 30.0%
!! GCTTCTTTTGGAAATCATTA+TGG + chr1_1:8834359-8834378 Msa0006050:intron 30.0%
CTATCCTGTATAAGATTTGT+TGG + chr1_1:8834434-8834453 Msa0006050:intron 30.0%
!! ATCCTGTATAAGATTTGTTG+GGG + chr1_1:8834436-8834455 Msa0006050:intron 30.0%
AGGCCAAACATATCTTTATT+TGG + chr1_1:8834639-8834658 Msa0006050:intron 30.0%
! AACACATTTTGAATCTTCAC+TGG + chr1_1:8834729-8834748 Msa0006050:intron 30.0%
TGTCTAATTGTGTCTCAAAT+AGG + chr1_1:8834770-8834789 Msa0006050:intron 30.0%
AATTGTGTCTCAAATAGGAT+TGG + chr1_1:8834775-8834794 Msa0006050:intron 30.0%
!!! ATTTTATTTTAGGTTTCCCC+AGG - chr1_1:8834818-8834837 None:intergenic 30.0%
! ATAAAATGCATGTGTTTTCG+TGG + chr1_1:8834831-8834850 Msa0006050:intron 30.0%
! TAAAATGCATGTGTTTTCGT+GGG + chr1_1:8834832-8834851 Msa0006050:intron 30.0%
ATTTCCACCATTTGCAATTT+AGG + chr1_1:8834900-8834919 Msa0006050:intron 30.0%
ATATCCTAAATTGCAAATGG+TGG - chr1_1:8834907-8834926 None:intergenic 30.0%
AAAGTGAAAAATTAGGTAGG+GGG + chr1_1:8835015-8835034 Msa0006050:intron 30.0%
!! TTCTGAGAGAGCTTTTTAAT+AGG + chr1_1:8835128-8835147 Msa0006050:intron 30.0%
!!! TTTGTTCAGTTACTTTTAGG+GGG - chr1_1:8835165-8835184 None:intergenic 30.0%
ACTAATGTAAGTAGCATATC+AGG + chr1_1:8835248-8835267 Msa0006050:intron 30.0%
CTAATGTAAGTAGCATATCA+GGG + chr1_1:8835249-8835268 Msa0006050:intron 30.0%
!! TTGTTGTTTCTCTTAGAACA+TGG + chr1_1:8835297-8835316 Msa0006050:intron 30.0%
ACAAGGAAACTAAAAATGTG+TGG - chr1_1:8835361-8835380 None:intergenic 30.0%
! TTAAGAAATTTGCTTGCACT+AGG + chr1_1:8835462-8835481 Msa0006050:CDS 30.0%
TATCGAACCTTATCGAAAAT+TGG - chr1_1:8835503-8835522 None:intergenic 30.0%
TGTAATCTATTCTGAACTAC+TGG - chr1_1:8835538-8835557 None:intergenic 30.0%
TTCTACAAAACTTCAGTACT+TGG - chr1_1:8835571-8835590 None:intergenic 30.0%
!! GTGGAATTTTGAGAAATTCT+TGG + chr1_1:8835677-8835696 Msa0006050:CDS 30.0%
!!! CTCTCTTCTTCAATTTTTTC+CGG - chr1_1:8835871-8835890 None:intergenic 30.0%
TCTATAGTGTAGTAGTGAAT+AGG - chr1_1:8836195-8836214 None:intergenic 30.0%
GTACTATGCTTTATCACTAA+AGG + chr1_1:8836229-8836248 Msa0006050:three_prime_UTR 30.0%
!! AAAGGGAAAGTGTTCATATA+TGG + chr1_1:8836247-8836266 Msa0006050:three_prime_UTR 30.0%
TGTTATATTGCGATGCTTGA+TGG - chr1_1:8832459-8832478 None:intergenic 35.0%
GCTTGATTGAAATTGTGAAG+AGG - chr1_1:8832559-8832578 None:intergenic 35.0%
TTAGGAAAATCGAAAGAGGT+TGG - chr1_1:8832676-8832695 None:intergenic 35.0%
! AACCTCTTTCGATTTTCCTA+AGG + chr1_1:8832675-8832694 Msa0006050:CDS 35.0%
TTAGACTTCAAAACAGCCTT+AGG - chr1_1:8832694-8832713 None:intergenic 35.0%
CATAAGCTATCTTGAAGAAC+AGG + chr1_1:8833129-8833148 Msa0006050:intron 35.0%
GCAGATAAGCAAATCAAAAC+AGG + chr1_1:8833387-8833406 Msa0006050:intron 35.0%
!!! AGGCACATAGTTTTGTTGAA+GGG + chr1_1:8833407-8833426 Msa0006050:intron 35.0%
! TTGTCAATGTTGCTTCAAGA+TGG + chr1_1:8833564-8833583 Msa0006050:CDS 35.0%
TTTCAATTGTAATGTTCGGG+AGG + chr1_1:8833640-8833659 Msa0006050:intron 35.0%
TTCAATTGTAATGTTCGGGA+GGG + chr1_1:8833641-8833660 Msa0006050:intron 35.0%
GCATACTTAATACCACTCAT+GGG - chr1_1:8833681-8833700 None:intergenic 35.0%
AGCATACTTAATACCACTCA+TGG - chr1_1:8833682-8833701 None:intergenic 35.0%
AAGGATAAATGTGACAGAAG+CGG - chr1_1:8833795-8833814 None:intergenic 35.0%
TTTGATGCATCCAACAAGTT+AGG + chr1_1:8834004-8834023 Msa0006050:intron 35.0%
TTGATGCATCCAACAAGTTA+GGG + chr1_1:8834005-8834024 Msa0006050:intron 35.0%
GCTCTATTTAAGCATACTTG+AGG + chr1_1:8834070-8834089 Msa0006050:intron 35.0%
! GTTTCTCCTGCTATTTGAAA+AGG + chr1_1:8834105-8834124 Msa0006050:intron 35.0%
TGATTTCCTTTGAATTGCAG+CGG + chr1_1:8834187-8834206 Msa0006050:intron 35.0%
! GAAATCATTATGGTTTGCGT+TGG + chr1_1:8834369-8834388 Msa0006050:intron 35.0%
! ATTATGGTTTGCGTTGGATT+AGG + chr1_1:8834375-8834394 Msa0006050:intron 35.0%
!! TCCTGTATAAGATTTGTTGG+GGG + chr1_1:8834437-8834456 Msa0006050:intron 35.0%
CTGAATTTCAATAGGAAGGA+AGG - chr1_1:8834478-8834497 None:intergenic 35.0%
CTTCCTTCCTATTGAAATTC+AGG + chr1_1:8834476-8834495 Msa0006050:intron 35.0%
ATGCCTGAATTTCAATAGGA+AGG - chr1_1:8834482-8834501 None:intergenic 35.0%
TCCTATTGAAATTCAGGCAT+AGG + chr1_1:8834482-8834501 Msa0006050:intron 35.0%
ACCTATGCCTGAATTTCAAT+AGG - chr1_1:8834486-8834505 None:intergenic 35.0%
GAAATTCAGGCATAGGTTAT+TGG + chr1_1:8834489-8834508 Msa0006050:intron 35.0%
! TTTTTGAACAAACTCCCAGT+TGG - chr1_1:8834561-8834580 None:intergenic 35.0%
!! TGCATGTCCATTTTAACCAA+CGG + chr1_1:8834687-8834706 Msa0006050:intron 35.0%
!! ATAGGATTGGCTTCTGTATA+AGG + chr1_1:8834788-8834807 Msa0006050:intron 35.0%
CTTCTGTATAAGGATATCCT+GGG + chr1_1:8834798-8834817 Msa0006050:intron 35.0%
TTCTGTATAAGGATATCCTG+GGG + chr1_1:8834799-8834818 Msa0006050:intron 35.0%
GGAAATAAAGCAAGATAGGT+AGG - chr1_1:8834886-8834905 None:intergenic 35.0%
TGGTGGAAATAAAGCAAGAT+AGG - chr1_1:8834890-8834909 None:intergenic 35.0%
TAAATGCCAAACAGAAAGCA+GGG - chr1_1:8834967-8834986 None:intergenic 35.0%
ATAAATGCCAAACAGAAAGC+AGG - chr1_1:8834968-8834987 None:intergenic 35.0%
! TGGCATTTATGTGCTTGTTA+TGG + chr1_1:8834978-8834997 Msa0006050:intron 35.0%
!! TTATGTGCTTGTTATGGAGA+CGG + chr1_1:8834984-8835003 Msa0006050:intron 35.0%
AAGTGAACTAGTGAAGAAGA+TGG + chr1_1:8835040-8835059 Msa0006050:intron 35.0%
TCAGAAAGCTGCAAACAAAT+AGG - chr1_1:8835114-8835133 None:intergenic 35.0%
!!! TTGTTCAGTTACTTTTAGGG+GGG - chr1_1:8835164-8835183 None:intergenic 35.0%
! GGTGTTGAAGAATTTGCAAA+AGG + chr1_1:8835217-8835236 Msa0006050:intron 35.0%
!! GTACTGAAGTTTTGTAGAAC+AGG + chr1_1:8835572-8835591 Msa0006050:intron 35.0%
!! GTAGAACAGGTTGATGTAAA+TGG + chr1_1:8835585-8835604 Msa0006050:intron 35.0%
!! TTTTTGGTGATCTTGTCAAG+TGG + chr1_1:8835658-8835677 Msa0006050:CDS 35.0%
ATTTGAAAAGGAGAGGTTGT+TGG - chr1_1:8835738-8835757 None:intergenic 35.0%
! AACCTCTCCTTTTCAAATTG+AGG + chr1_1:8835740-8835759 Msa0006050:CDS 35.0%
TACCTCAATTTGAAAAGGAG+AGG - chr1_1:8835745-8835764 None:intergenic 35.0%
AGTTAGACTTCTGATGTTGT+TGG - chr1_1:8835779-8835798 None:intergenic 35.0%
CTTCTGCAAAAATGTGAAAC+GGG - chr1_1:8836039-8836058 None:intergenic 35.0%
CCTTCTGCAAAAATGTGAAA+CGG - chr1_1:8836040-8836059 None:intergenic 35.0%
! ATTGTGAAGAGGTGTGAAGA+AGG - chr1_1:8832548-8832567 None:intergenic 40.0%
AGCCTTAGGAAAATCGAAAG+AGG - chr1_1:8832680-8832699 None:intergenic 40.0%
ATAAGCTTGTCAAGGACTCA+AGG + chr1_1:8833222-8833241 Msa0006050:intron 40.0%
!!! CAGGCACATAGTTTTGTTGA+AGG + chr1_1:8833406-8833425 Msa0006050:intron 40.0%
!!! GGCACATAGTTTTGTTGAAG+GGG + chr1_1:8833408-8833427 Msa0006050:intron 40.0%
!!! GCACATAGTTTTGTTGAAGG+GGG + chr1_1:8833409-8833428 Msa0006050:intron 40.0%
!!! CACATAGTTTTGTTGAAGGG+GGG + chr1_1:8833410-8833429 Msa0006050:intron 40.0%
GGTGCAGGATATTGATAAGA+AGG + chr1_1:8833502-8833521 Msa0006050:intron 40.0%
TGTGCCTCTTAGCAAATTCA+AGG + chr1_1:8833526-8833545 Msa0006050:CDS 40.0%
GTGCCTCTTAGCAAATTCAA+GGG + chr1_1:8833527-8833546 Msa0006050:CDS 40.0%
TGCCTCTTAGCAAATTCAAG+GGG + chr1_1:8833528-8833547 Msa0006050:CDS 40.0%
!! TTCCCCTTGAATTTGCTAAG+AGG - chr1_1:8833533-8833552 None:intergenic 40.0%
TCTTAGCAAATTCAAGGGGA+AGG + chr1_1:8833532-8833551 Msa0006050:CDS 40.0%
TGGTATCACAACCACATTTG+CGG + chr1_1:8833769-8833788 Msa0006050:intron 40.0%
AGCTACAAGATCCAGATAAC+AGG - chr1_1:8834342-8834361 None:intergenic 40.0%
! CTGGATCTTGTAGCTTCTTT+TGG + chr1_1:8834347-8834366 Msa0006050:intron 40.0%
CTGAGTTTCAATAGGAAGGA+AGG - chr1_1:8834413-8834432 None:intergenic 40.0%
CTTCCTTCCTATTGAAACTC+AGG + chr1_1:8834411-8834430 Msa0006050:intron 40.0%
TAGCCTGAGTTTCAATAGGA+AGG - chr1_1:8834417-8834436 None:intergenic 40.0%
AGGATAGCCTGAGTTTCAAT+AGG - chr1_1:8834421-8834440 None:intergenic 40.0%
!! CCTGTATAAGATTTGTTGGG+GGG + chr1_1:8834438-8834457 Msa0006050:intron 40.0%
!! CTGTATAAGATTTGTTGGGG+GGG + chr1_1:8834439-8834458 Msa0006050:intron 40.0%
!! TGTATAAGATTTGTTGGGGG+GGG + chr1_1:8834440-8834459 Msa0006050:intron 40.0%
TGTGAATGAAGTTGACCAAC+TGG + chr1_1:8834543-8834562 Msa0006050:intron 40.0%
GTGAATGAAGTTGACCAACT+GGG + chr1_1:8834544-8834563 Msa0006050:intron 40.0%
CCATATCATCATATCCCAGT+TGG - chr1_1:8834595-8834614 None:intergenic 40.0%
CCAACTGGGATATGATGATA+TGG + chr1_1:8834592-8834611 Msa0006050:intron 40.0%
!! GCATGTCCATTTTAACCAAC+GGG + chr1_1:8834688-8834707 Msa0006050:intron 40.0%
!! CATGTCCATTTTAACCAACG+GGG + chr1_1:8834689-8834708 Msa0006050:intron 40.0%
GCTTCTGTATAAGGATATCC+TGG + chr1_1:8834797-8834816 Msa0006050:intron 40.0%
AAATGCCAAACAGAAAGCAG+GGG - chr1_1:8834966-8834985 None:intergenic 40.0%
! TCCTTGTGCATTTTCTTTCC+AGG + chr1_1:8835374-8835393 Msa0006050:intron 40.0%
ACCTGGAAAGAAAATGCACA+AGG - chr1_1:8835378-8835397 None:intergenic 40.0%
! GTGCATTTTCTTTCCAGGTT+TGG + chr1_1:8835379-8835398 Msa0006050:intron 40.0%
AAAGCTAGAATCTCCAAACC+TGG - chr1_1:8835395-8835414 None:intergenic 40.0%
GCTTTCCCTTGCAATCAATT+TGG + chr1_1:8835410-8835429 Msa0006050:CDS 40.0%
GCATGCCAAATTGATTGCAA+GGG - chr1_1:8835418-8835437 None:intergenic 40.0%
TGCATGCCAAATTGATTGCA+AGG - chr1_1:8835419-8835438 None:intergenic 40.0%
TTGCAATCAATTTGGCATGC+AGG + chr1_1:8835418-8835437 Msa0006050:CDS 40.0%
TGGTATACTGGAGCAGTAAA+TGG - chr1_1:8835612-8835631 None:intergenic 40.0%
GACTTCAGAAACTGGTATAC+TGG - chr1_1:8835624-8835643 None:intergenic 40.0%
CAGAACTTGACTTCAGAAAC+TGG - chr1_1:8835632-8835651 None:intergenic 40.0%
!! CAGTTTCTGAAGTCAAGTTC+TGG + chr1_1:8835630-8835649 Msa0006050:CDS 40.0%
!! TTTCTGAAGTCAAGTTCTGG+AGG + chr1_1:8835633-8835652 Msa0006050:CDS 40.0%
!! TTCTGAAGTCAAGTTCTGGA+GGG + chr1_1:8835634-8835653 Msa0006050:CDS 40.0%
!!! TCAAGTTCTGGAGGGTTTTT+TGG + chr1_1:8835642-8835661 Msa0006050:CDS 40.0%
! CCGTTTCACATTTTTGCAGA+AGG + chr1_1:8836037-8836056 Msa0006050:intron 40.0%
! TACTTGCTGCGTGAAAATTC+AGG + chr1_1:8836072-8836091 Msa0006050:exon 40.0%
TCAGGAATGAGCAAAATCAG+AGG + chr1_1:8836090-8836109 Msa0006050:three_prime_UTR 40.0%
ACAGTCTCTGCCACACAAAA+TGG + chr1_1:8832501-8832520 Msa0006050:intron 45.0%
GCCACACAAAATGGTTTCCA+TGG + chr1_1:8832510-8832529 Msa0006050:exon 45.0%
! GCCATGGAAACCATTTTGTG+TGG - chr1_1:8832514-8832533 None:intergenic 45.0%
! AAGAGGTGTGAAGAAGGTTG+TGG - chr1_1:8832542-8832561 None:intergenic 45.0%
GCTTATCTGCACTCATCTAC+TGG - chr1_1:8833377-8833396 None:intergenic 45.0%
!!! TTGAAGGGGGGAACCTTTTT+TGG + chr1_1:8833422-8833441 Msa0006050:intron 45.0%
! TAGAGGTGTGTGTAACTGAG+GGG - chr1_1:8833918-8833937 None:intergenic 45.0%
! CTAGAGGTGTGTGTAACTGA+GGG - chr1_1:8833919-8833938 None:intergenic 45.0%
! ACTAGAGGTGTGTGTAACTG+AGG - chr1_1:8833920-8833939 None:intergenic 45.0%
CAAAAATCGAGTCGGTGACT+TGG + chr1_1:8833948-8833967 Msa0006050:intron 45.0%
! GACTCAACACCCTAACTTGT+TGG - chr1_1:8834017-8834036 None:intergenic 45.0%
GTCAAACCGCTGCAATTCAA+AGG - chr1_1:8834196-8834215 None:intergenic 45.0%
CCCCCCAACAAATCTTATAC+AGG - chr1_1:8834441-8834460 None:intergenic 45.0%
!! GTATAAGATTTGTTGGGGGG+GGG + chr1_1:8834441-8834460 Msa0006050:intron 45.0%
!! TATAAGATTTGTTGGGGGGG+GGG + chr1_1:8834442-8834461 Msa0006050:intron 45.0%
! CTCAACCCCGTTGGTTAAAA+TGG - chr1_1:8834697-8834716 None:intergenic 45.0%
TCATTCCCCTGCTTTCTGTT+TGG + chr1_1:8834958-8834977 Msa0006050:intron 45.0%
GAAAAGGAGAGGTTGTTGGT+GGG - chr1_1:8835734-8835753 None:intergenic 45.0%
TGAAAAGGAGAGGTTGTTGG+TGG - chr1_1:8835735-8835754 None:intergenic 45.0%
TTCACGCAGCAAGTAACTTC+TGG - chr1_1:8836067-8836086 None:intergenic 45.0%
! ATCAGAGGCATGCTTGTACA+AGG + chr1_1:8836105-8836124 Msa0006050:three_prime_UTR 45.0%
!! TTAAAAAATAAATAAATAGA+AGG + chr1_1:8834042-8834061 Msa0006050:intron 5.0%
GAAGGTTGTGGAAGAAGCCA+TGG - chr1_1:8832530-8832549 None:intergenic 50.0%
TCTTGAAGAACAGGGCCGTT+TGG + chr1_1:8833138-8833157 Msa0006050:intron 50.0%
AAGAACAGGGCCGTTTGGAT+TGG + chr1_1:8833143-8833162 Msa0006050:intron 50.0%
GTTGGTCGCTACCTGTTATC+TGG + chr1_1:8834328-8834347 Msa0006050:intron 50.0%
TTGCACTCGCTTCCCATGAG+TGG + chr1_1:8833666-8833685 Msa0006050:intron 55.0%
CAATTGGGACTCAACCCCGT+TGG - chr1_1:8834706-8834725 None:intergenic 55.0%
CAATTTGGCATGCAGGAGCC+TGG + chr1_1:8835425-8835444 Msa0006050:CDS 55.0%
GACAGAAGCGGCCGCAAATG+TGG - chr1_1:8833783-8833802 None:intergenic 60.0%
!! AAGATTTGTTGGGGGGGGGG+TGG + chr1_1:8834445-8834464 Msa0006050:intron 60.0%
GTTGGGGGGGGGGTGGAATA+TGG + chr1_1:8834452-8834471 Msa0006050:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 8832394 8836397 8832394 ID=Msa0006050;Name=Msa0006050
chr1_1 mRNA 8832394 8836397 8832394 ID=Msa0006050-mRNA-1;Parent=Msa0006050;Name=Msa0006050-mRNA-1;_AED=0.03;_eAED=0.03;_QI=90|1|1|1|0.83|0.71|7|312|236
chr1_1 exon 8832394 8832468 8832394 ID=Msa0006050-mRNA-1:exon:3113;Parent=Msa0006050-mRNA-1
chr1_1 exon 8832505 8832774 8832505 ID=Msa0006050-mRNA-1:exon:3114;Parent=Msa0006050-mRNA-1
chr1_1 exon 8833509 8833585 8833509 ID=Msa0006050-mRNA-1:exon:3115;Parent=Msa0006050-mRNA-1
chr1_1 exon 8834207 8834268 8834207 ID=Msa0006050-mRNA-1:exon:3116;Parent=Msa0006050-mRNA-1
chr1_1 exon 8835396 8835514 8835396 ID=Msa0006050-mRNA-1:exon:3117;Parent=Msa0006050-mRNA-1
chr1_1 exon 8835594 8835761 8835594 ID=Msa0006050-mRNA-1:exon:3118;Parent=Msa0006050-mRNA-1
chr1_1 exon 8836056 8836397 8836056 ID=Msa0006050-mRNA-1:exon:3119;Parent=Msa0006050-mRNA-1
chr1_1 five_prime_UTR 8832394 8832468 8832394 ID=Msa0006050-mRNA-1:five_prime_utr;Parent=Msa0006050-mRNA-1
chr1_1 five_prime_UTR 8832505 8832519 8832505 ID=Msa0006050-mRNA-1:five_prime_utr;Parent=Msa0006050-mRNA-1
chr1_1 CDS 8832520 8832774 8832520 ID=Msa0006050-mRNA-1:cds;Parent=Msa0006050-mRNA-1
chr1_1 CDS 8833509 8833585 8833509 ID=Msa0006050-mRNA-1:cds;Parent=Msa0006050-mRNA-1
chr1_1 CDS 8834207 8834268 8834207 ID=Msa0006050-mRNA-1:cds;Parent=Msa0006050-mRNA-1
chr1_1 CDS 8835396 8835514 8835396 ID=Msa0006050-mRNA-1:cds;Parent=Msa0006050-mRNA-1
chr1_1 CDS 8835594 8835761 8835594 ID=Msa0006050-mRNA-1:cds;Parent=Msa0006050-mRNA-1
chr1_1 CDS 8836056 8836085 8836056 ID=Msa0006050-mRNA-1:cds;Parent=Msa0006050-mRNA-1
chr1_1 three_prime_UTR 8836086 8836397 8836086 ID=Msa0006050-mRNA-1:three_prime_utr;Parent=Msa0006050-mRNA-1
Gene Sequence

>Msa0006050

ATGGTTTCCATGGCTTCTTCCACAACCTTCTTCACACCTCTTCACAATTTCAATCAAGCTAGAACATACTCAATACCTTCAATTTCTTTGCCTTTTGTAAAATCCTCAATTGCTTCTTCAAAATCACCTTTTTTTCAACATGGCTTTTCTCAACCAACCTCTTTCGATTTTCCTAAGGCTGTTTTGAAGTCTAAGTCTTTCTCAGTCAACGCTAGAGCTGTTACTGATAAATCCATTTATGATTTTACTGTCAAGGATATTGATAAGAAGGATGTGCCTCTTAGCAAATTCAAGGGGAAGGTTCTTTTGATTGTCAATGTTGCTTCAAGATGCGGTTTGACATCATCAAACTACACGGAACTCTCACACTTATATGAAAATTTTAAAGACAAAGGTTTGGAGATTCTAGCTTTCCCTTGCAATCAATTTGGCATGCAGGAGCCTGGATCAAATGAAGAAATTAAGAAATTTGCTTGCACTAGGTTCAAAGCAGAATTTCCAATTTTCGATAAGGTTGATGTAAATGGACCATTTACTGCTCCAGTATACCAGTTTCTGAAGTCAAGTTCTGGAGGGTTTTTTGGTGATCTTGTCAAGTGGAATTTTGAGAAATTCTTGGTCGATAAAAATGGTAAAGTTGTTGAACGATACCCACCAACAACCTCTCCTTTTCAAATTGAGAAGGATATCCAGAAGTTACTTGCTGCGTGA

Protein sequence

>Msa0006050

MVSMASSTTFFTPLHNFNQARTYSIPSISLPFVKSSIASSKSPFFQHGFSQPTSFDFPKAVLKSKSFSVNARAVTDKSIYDFTVKDIDKKDVPLSKFKGKVLLIVNVASRCGLTSSNYTELSHLYENFKDKGLEILAFPCNQFGMQEPGSNEEIKKFACTRFKAEFPIFDKVDVNGPFTAPVYQFLKSSSGGFFGDLVKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLAA*