AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0540160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540160 MtrunA17_Chr4g0017941 91.411 326 13 5 2 326 1 312 0.0 554
Msa0540160 MtrunA17_Chr1g0178361 56.774 310 109 6 19 326 19 305 1.22e-107 316
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0540160 AT5G61670.2 77.320 291 46 4 36 326 37 307 4.83e-154 434
Msa0540160 AT5G61670.1 77.320 291 46 4 36 326 37 307 4.83e-154 434
Msa0540160 AT5G06130.2 58.503 294 98 5 41 326 38 315 2.65e-115 336
Msa0540160 AT5G06130.1 61.538 247 75 4 84 326 1 231 3.51e-105 307

Find 92 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAATCTTGTACAGTTTC+AGG 0.123968 4_1:-21799414 None:intergenic
GAGAATGGACACAAGAAATT+AGG 0.160765 4_1:+21803721 Msa0540160:three_prime_UTR
GGAATGAATGATGGGAAATT+AGG 0.261986 4_1:-21800896 None:intergenic
TATCCATCTCTCTGGGAATA+TGG 0.267448 4_1:-21803591 None:intergenic
TGAAATTGGATCGAAAATTT+AGG 0.272812 4_1:-21799046 None:intergenic
CATTCCATTCTTGCCTCCTT+TGG 0.293420 4_1:+21800913 Msa0540160:CDS
GATGGAACTTCAAGAAATTC+AGG 0.311738 4_1:+21799440 Msa0540160:CDS
ACAAAACAGGTTTAAATGTA+TGG 0.319853 4_1:+21803761 Msa0540160:three_prime_UTR
ATGTTTCTGTTGTGGAATAA+TGG 0.331491 4_1:+21803495 Msa0540160:three_prime_UTR
TGGTGTAATCTCTGCATTAA+TGG 0.340651 4_1:+21802175 Msa0540160:CDS
TAAAGGAAACCATTCTGTTC+CGG 0.343976 4_1:-21803647 None:intergenic
ATTTAGATGAATGAATCTTT+TGG 0.346573 4_1:-21799167 None:intergenic
AAGAAATTCAGGATAATATT+CGG 0.347874 4_1:+21799451 Msa0540160:CDS
TTCGCTTGCCATAGCCATTC+CGG 0.349664 4_1:-21803379 None:intergenic
CCTATTGTGGCATCATTCTC+TGG 0.350969 4_1:+21802143 Msa0540160:CDS
AGAATGGACACAAGAAATTA+GGG 0.372630 4_1:+21803722 Msa0540160:three_prime_UTR
ATTTAGGTAGTTGTTGTTGA+TGG 0.377693 4_1:-21799030 None:intergenic
AAAGAAGATGATGTTGTGTT+TGG 0.379275 4_1:+21799102 Msa0540160:exon
AAAGGAAACCATTCTGTTCC+GGG 0.388543 4_1:-21803646 None:intergenic
TTGGAGCTTAAGCTTGGAAT+AGG 0.400506 4_1:+21801826 Msa0540160:CDS
GAGAATGGAGGATGTGAAAA+TGG 0.405969 4_1:-21799000 None:intergenic
TGTTCAAATTGCTCCGGATC+TGG 0.412046 4_1:+21802631 Msa0540160:CDS
CGCAGGTTCTGTATTATAGA+AGG 0.413449 4_1:+21799390 Msa0540160:intron
TGAAAATGGACTGCACAAAT+TGG 0.414056 4_1:-21798986 None:intergenic
CTTACCAAAGGAGGCAAGAA+TGG 0.419900 4_1:-21800917 None:intergenic
ATGTTGTGTTTGGGTGTAGT+TGG 0.422331 4_1:+21799112 Msa0540160:CDS
AGGTATCTTATCCATCTCTC+TGG 0.430753 4_1:-21803599 None:intergenic
CCAGAGAATGATGCCACAAT+AGG 0.441935 4_1:-21802143 None:intergenic
TCATTCTCTGGTGGAGCTGT+TGG 0.444757 4_1:+21802155 Msa0540160:CDS
GAGATAAAGATCGAAAGATC+TGG 0.452427 4_1:+21803562 Msa0540160:three_prime_UTR
TGCAAATACTGTCTTGGTAC+TGG 0.456169 4_1:+21802239 Msa0540160:CDS
AGGCTGATCTCCACCATTGA+AGG 0.461185 4_1:-21802584 None:intergenic
ATGTCCAACCTTGCCAGATC+CGG 0.468622 4_1:-21802644 None:intergenic
TTGTGTTTGGGTGTAGTTGG+TGG 0.471210 4_1:+21799115 Msa0540160:CDS
GGCAAGAATGGAATGAATGA+TGG 0.471565 4_1:-21800905 None:intergenic
TCTCAGTTGGAGCTTAAGCT+TGG 0.471643 4_1:+21801820 Msa0540160:intron
GGCAATTTGAAATTGTATGA+TGG 0.472443 4_1:+21803463 Msa0540160:three_prime_UTR
GATAAACAATGTAAAACAAC+AGG 0.476410 4_1:+21802205 Msa0540160:CDS
AAGAAGATGATGTTGTGTTT+GGG 0.485406 4_1:+21799103 Msa0540160:exon
AATTTGAAGTGCTTGGCAAA+TGG 0.489129 4_1:+21800986 Msa0540160:intron
AGGAGGATACCGGTTCAATC+AGG 0.490296 4_1:-21802564 None:intergenic
TGCAGACTTCAGCAAACCTC+CGG 0.495333 4_1:+21801030 Msa0540160:CDS
GTTGATGGCAAGTTTGAGAA+TGG 0.500292 4_1:-21799015 None:intergenic
CATAGTAATATGCAAAAGAA+AGG 0.500735 4_1:+21803540 Msa0540160:three_prime_UTR
GGAGCAATTTGAACATCTCT+CGG 0.515917 4_1:-21802623 None:intergenic
TGTGGTATATGTTTCTGTTG+TGG 0.520157 4_1:+21803487 Msa0540160:three_prime_UTR
AAAAGATGCAAATACTGTCT+TGG 0.520613 4_1:+21802233 Msa0540160:CDS
ATATTAAACATCTAATCAAA+AGG 0.525443 4_1:-21803420 None:intergenic
TTCTTATAGATATTGTAAGT+AGG 0.529570 4_1:+21803442 Msa0540160:three_prime_UTR
CAATAAGAGGTGGCGTGTCA+TGG 0.530836 4_1:+21799207 Msa0540160:CDS
GCAATTTGAAATTGTATGAT+GGG 0.533710 4_1:+21803464 Msa0540160:three_prime_UTR
TCTTTGCACCGGAATGGCTA+TGG 0.534453 4_1:+21803371 Msa0540160:CDS
TGTGTTTGGGTGTAGTTGGT+GGG 0.535913 4_1:+21799116 Msa0540160:CDS
CCACCATTGAAGGAGGATAC+CGG 0.540857 4_1:-21802574 None:intergenic
AGCACTTGTCCTGATTGAAC+CGG 0.540917 4_1:+21802555 Msa0540160:CDS
GAACCGGTATCCTCCTTCAA+TGG 0.546734 4_1:+21802571 Msa0540160:CDS
AACAGGTTGCATAATACTGC+CGG 0.551192 4_1:-21801049 None:intergenic
GAGAGATGTTCAAATTGCTC+CGG 0.560664 4_1:+21802625 Msa0540160:CDS
AACATGTCTTTGCACCGGAA+TGG 0.564128 4_1:+21803365 Msa0540160:CDS
GCAAGAATGGAATGAATGAT+GGG 0.568641 4_1:-21800904 None:intergenic
TGCATCTGCCTATGCAGTTG+AGG 0.569061 4_1:+21801881 Msa0540160:CDS
TATCCATATTCCCAGAGAGA+TGG 0.569523 4_1:+21803588 Msa0540160:three_prime_UTR
AAATTGCTCCGGATCTGGCA+AGG 0.573161 4_1:+21802636 Msa0540160:CDS
GGTATCTTATCCATCTCTCT+GGG 0.574686 4_1:-21803598 None:intergenic
TAGTCAGGTTGATCCTATTG+TGG 0.580018 4_1:+21802130 Msa0540160:intron
TAATCAAAAGGATCAATTCG+CGG 0.580042 4_1:-21803408 None:intergenic
TTGAAATTGTATGATGGGTG+TGG 0.585204 4_1:+21803469 Msa0540160:three_prime_UTR
GAGCTTAAGCTTGGAATAGG+TGG 0.586112 4_1:+21801829 Msa0540160:CDS
ATTGTGGCATCATTCTCTGG+TGG 0.587254 4_1:+21802146 Msa0540160:CDS
AATGGACTGCACAAATTGGT+GGG 0.587469 4_1:-21798982 None:intergenic
TGATACCACCCGGAACAGAA+TGG 0.591352 4_1:+21803638 Msa0540160:three_prime_UTR
ATTCCGGTGCAAAGACATGT+TGG 0.592847 4_1:-21803363 None:intergenic
AGGATAATATTCGGAGTCGA+AGG 0.596991 4_1:+21799460 Msa0540160:CDS
CCGGTATCCTCCTTCAATGG+TGG 0.599228 4_1:+21802574 Msa0540160:CDS
TGTCCAACATGTCTTTGCAC+CGG 0.600830 4_1:+21803360 Msa0540160:CDS
TACATGAAACTTACCAAAGG+AGG 0.601236 4_1:-21800926 None:intergenic
TAAATCTTACACTCGGAGCA+AGG 0.601691 4_1:-21801109 None:intergenic
GGACGCTACCTCAACTGCAT+AGG 0.605455 4_1:-21801889 None:intergenic
GTTTAGTTGAAGACATGTTG+TGG 0.621480 4_1:-21799140 None:intergenic
CTGATCTCCACCATTGAAGG+AGG 0.622262 4_1:-21802581 None:intergenic
AAATGGACTGCACAAATTGG+TGG 0.626713 4_1:-21798983 None:intergenic
TGTTCCGGGTGGTATCAAGA+TGG 0.627932 4_1:-21803632 None:intergenic
AAAACAGTTTCAATAAGAGG+TGG 0.630936 4_1:+21799197 Msa0540160:CDS
TATCAATGGAATCAAAAGTG+AGG 0.638280 4_1:+21798877 None:intergenic
AGTTCCATCTTGATACCACC+CGG 0.651553 4_1:+21803628 Msa0540160:three_prime_UTR
TGTGCTCGATGTTCAAACAC+GGG 0.651986 4_1:+21802532 Msa0540160:CDS
ATGTGCTCGATGTTCAAACA+CGG 0.661742 4_1:+21802531 Msa0540160:CDS
ATCAAGATGGAACTGAGTCG+AGG 0.668471 4_1:-21803619 None:intergenic
GATGGCAAGTTTGAGAATGG+AGG 0.671797 4_1:-21799012 None:intergenic
AGGTTGCATAATACTGCCGG+AGG 0.679756 4_1:-21801046 None:intergenic
ATGGACTGCACAAATTGGTG+GGG 0.694345 4_1:-21798981 None:intergenic
GGAAACCATTCTGTTCCGGG+TGG 0.736398 4_1:-21803643 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATAGATATATTGTTTT+TGG - chr4_1:21798935-21798954 None:intergenic 10.0%
!! AAAATGAATTTAATATTGAA+TGG + chr4_1:21799892-21799911 Msa0540160:intron 10.0%
!!! TGATAATATTTTTATTGATA+AGG + chr4_1:21801632-21801651 Msa0540160:intron 10.0%
!! CATAATTTAGTTATTATTAT+TGG - chr4_1:21802100-21802119 None:intergenic 10.0%
!! TAATAATAACTAAATTATGT+TGG + chr4_1:21802101-21802120 Msa0540160:intron 10.0%
!!! AATTCCATCATTTTTTAAAA+CGG - chr4_1:21799356-21799375 None:intergenic 15.0%
!!! GAATAAGATTTTTTTACATA+TGG + chr4_1:21799482-21799501 Msa0540160:CDS 15.0%
!! TAAAAAAATATTGAAGATGA+AGG + chr4_1:21799936-21799955 Msa0540160:intron 15.0%
!! AAAAAAATATTGAAGATGAA+GGG + chr4_1:21799937-21799956 Msa0540160:intron 15.0%
!! TGATTATATACACAATTATA+CGG - chr4_1:21800437-21800456 None:intergenic 15.0%
!!! ATTTATACATTTTACTCTAT+GGG + chr4_1:21800754-21800773 Msa0540160:intron 15.0%
!! GTATTACTTTATCTATATTA+TGG - chr4_1:21802725-21802744 None:intergenic 15.0%
!! TGAACTTTAAATTAAGTTAA+AGG - chr4_1:21802797-21802816 None:intergenic 15.0%
!! AGAAATGAATAAAAGAATTA+TGG + chr4_1:21802985-21803004 Msa0540160:intron 15.0%
!! AATTATGGTTTACAAATTAA+TGG + chr4_1:21803000-21803019 Msa0540160:intron 15.0%
!! ATTATGGTTTACAAATTAAT+GGG + chr4_1:21803001-21803020 Msa0540160:intron 15.0%
!! ATATTAAACATCTAATCAAA+AGG - chr4_1:21803423-21803442 None:intergenic 15.0%
!!! AGATATATTGTTTTTGGAAA+GGG - chr4_1:21798929-21798948 None:intergenic 20.0%
!!! TAGATATATTGTTTTTGGAA+AGG - chr4_1:21798930-21798949 None:intergenic 20.0%
!!! TCAACTTTAAGATTGAAAAA+AGG - chr4_1:21799073-21799092 None:intergenic 20.0%
!!! ATTTAGATGAATGAATCTTT+TGG - chr4_1:21799170-21799189 None:intergenic 20.0%
!! GGTGTATTTCATAAAAAAAA+GGG - chr4_1:21799332-21799351 None:intergenic 20.0%
!!! ATTCCATCATTTTTTAAAAC+GGG - chr4_1:21799355-21799374 None:intergenic 20.0%
!! AAGAAATTCAGGATAATATT+CGG + chr4_1:21799451-21799470 Msa0540160:CDS 20.0%
!!! CAGTTTGATTTTATTACTTA+TGG + chr4_1:21800588-21800607 Msa0540160:intron 20.0%
!! ATGTATACATAAAATTGAGA+TGG + chr4_1:21800622-21800641 Msa0540160:intron 20.0%
!!! TAAAATTGAGATGGATTTTT+TGG + chr4_1:21800631-21800650 Msa0540160:intron 20.0%
!! CATAGAGTAAAATGTATAAA+TGG - chr4_1:21800755-21800774 None:intergenic 20.0%
!!! CATTTATACATTTTACTCTA+TGG + chr4_1:21800753-21800772 Msa0540160:intron 20.0%
!!! ATATACTCTTGTTATTTTGT+AGG + chr4_1:21800797-21800816 Msa0540160:intron 20.0%
!! TAATGAAGTAGAATATGAAA+TGG - chr4_1:21801201-21801220 None:intergenic 20.0%
!! TTCATATTCTACTTCATTAA+TGG + chr4_1:21801202-21801221 Msa0540160:intron 20.0%
!! TACAATATAGATTATTACGA+CGG - chr4_1:21801321-21801340 None:intergenic 20.0%
!!! TATTTTTATTGATAAGGCTT+AGG + chr4_1:21801638-21801657 Msa0540160:intron 20.0%
!! TTACTTTATCTATATTATGG+CGG - chr4_1:21802722-21802741 None:intergenic 20.0%
!!! ATTTTCGTTTTGAAAGATAA+AGG - chr4_1:21802854-21802873 None:intergenic 20.0%
!!! ATTGCTCTTTTATGAAATTT+TGG + chr4_1:21802916-21802935 Msa0540160:intron 20.0%
!! TCCAAAACTATGAAAAAAAA+TGG - chr4_1:21803089-21803108 None:intergenic 20.0%
!! TTCTTATAGATATTGTAAGT+AGG + chr4_1:21803442-21803461 Msa0540160:three_prime_UTR 20.0%
!! CATTCAATTCTCAAAAATAA+AGG - chr4_1:21803667-21803686 None:intergenic 20.0%
!!! TTATTTTTGAGAATTGAATG+TGG + chr4_1:21803667-21803686 Msa0540160:three_prime_UTR 20.0%
!!! TGTTTTGTAAAATAGTAATC+AGG - chr4_1:21803749-21803768 None:intergenic 20.0%
!!! TGATTACTATTTTACAAAAC+AGG + chr4_1:21803748-21803767 Msa0540160:three_prime_UTR 20.0%
! TGAAATTGGATCGAAAATTT+AGG - chr4_1:21799049-21799068 None:intergenic 25.0%
! GATTGAAAAAAGGTTGAAAT+TGG - chr4_1:21799063-21799082 None:intergenic 25.0%
! AGAAAAACAGTTTCAATAAG+AGG + chr4_1:21799194-21799213 Msa0540160:CDS 25.0%
! GGGTGTATTTCATAAAAAAA+AGG - chr4_1:21799333-21799352 None:intergenic 25.0%
!!! TTCCATCATTTTTTAAAACG+GGG - chr4_1:21799354-21799373 None:intergenic 25.0%
!!! ATTTTTATTGTTTTGAACGC+AGG + chr4_1:21799373-21799392 Msa0540160:intron 25.0%
!!! GATTTTTTTACATATGGAAG+AGG + chr4_1:21799488-21799507 Msa0540160:CDS 25.0%
! ATTGTTAATGTATACAATCC+AGG - chr4_1:21799601-21799620 None:intergenic 25.0%
!! TTGCAATCACTAACATATTT+TGG - chr4_1:21799759-21799778 None:intergenic 25.0%
! CATCATTATTGTTCTTTCTT+CGG - chr4_1:21799805-21799824 None:intergenic 25.0%
! ATTTAATATTGAATGGACGA+TGG + chr4_1:21799899-21799918 Msa0540160:intron 25.0%
! CTAAAGATCTCTACTATATA+AGG - chr4_1:21800221-21800240 None:intergenic 25.0%
! AATTGTGTATATAATCACAC+TGG + chr4_1:21800440-21800459 Msa0540160:intron 25.0%
!! TGGTAATTTGAATTTTCAAC+AGG - chr4_1:21800735-21800754 None:intergenic 25.0%
! AGAATTAAAAATGCTGAACT+TGG + chr4_1:21800843-21800862 Msa0540160:CDS 25.0%
!! ATTAGTGGGATAATACTTTT+TGG + chr4_1:21801080-21801099 Msa0540160:CDS 25.0%
! GTAAAAGTAAATCTTACACT+CGG - chr4_1:21801119-21801138 None:intergenic 25.0%
! ACAATATAGATTATTACGAC+GGG - chr4_1:21801320-21801339 None:intergenic 25.0%
! CGTAATAATCTATATTGTAG+CGG + chr4_1:21801322-21801341 Msa0540160:intron 25.0%
!! TTATTGTAATTTTTGTCTCG+TGG - chr4_1:21801464-21801483 None:intergenic 25.0%
! TTAGGTTAAGCAAATATTAC+TGG - chr4_1:21801582-21801601 None:intergenic 25.0%
!! CTTTTTATATCCATCTTTTG+TGG + chr4_1:21801757-21801776 Msa0540160:intron 25.0%
! GATAAACAATGTAAAACAAC+AGG + chr4_1:21802205-21802224 Msa0540160:CDS 25.0%
!! TTTGGAATCAAATTTCTGAA+TGG + chr4_1:21802296-21802315 Msa0540160:intron 25.0%
!! TGACATTTCGATTATACTTT+TGG + chr4_1:21802490-21802509 Msa0540160:intron 25.0%
! AAATTAAGTTAAAGGACTTC+TGG - chr4_1:21802789-21802808 None:intergenic 25.0%
!! CATAAAAGAGCAATTTTTCA+CGG - chr4_1:21802910-21802929 None:intergenic 25.0%
! TTCATTTCTACTAGCTAAAA+TGG - chr4_1:21802974-21802993 None:intergenic 25.0%
!!! GCCATTTTTTTTCATAGTTT+TGG + chr4_1:21803085-21803104 Msa0540160:intron 25.0%
! GTTACAATTATCATCATCAA+GGG - chr4_1:21803180-21803199 None:intergenic 25.0%
! AGTTACAATTATCATCATCA+AGG - chr4_1:21803181-21803200 None:intergenic 25.0%
! AAGATATAGACGATTAATCT+AGG - chr4_1:21803251-21803270 None:intergenic 25.0%
!! GCAATTTGAAATTGTATGAT+GGG + chr4_1:21803464-21803483 Msa0540160:three_prime_UTR 25.0%
! CATAGTAATATGCAAAAGAA+AGG + chr4_1:21803540-21803559 Msa0540160:three_prime_UTR 25.0%
! ACAAAACAGGTTTAAATGTA+TGG + chr4_1:21803761-21803780 Msa0540160:three_prime_UTR 25.0%
!!! TATTTTTAGTGGAGTTGAGA+CGG - chr4_1:21798906-21798925 None:intergenic 30.0%
!!! TTTGGAAAGGGTATTTTTAG+TGG - chr4_1:21798917-21798936 None:intergenic 30.0%
! ATTTAGGTAGTTGTTGTTGA+TGG - chr4_1:21799033-21799052 None:intergenic 30.0%
AAAGAAGATGATGTTGTGTT+TGG + chr4_1:21799102-21799121 Msa0540160:exon 30.0%
AAGAAGATGATGTTGTGTTT+GGG + chr4_1:21799103-21799122 Msa0540160:exon 30.0%
AAAACAGTTTCAATAAGAGG+TGG + chr4_1:21799197-21799216 Msa0540160:CDS 30.0%
!!! TCCATCATTTTTTAAAACGG+GGG - chr4_1:21799353-21799372 None:intergenic 30.0%
! TGTACAAGATTTTGCTAAGA+TGG + chr4_1:21799422-21799441 Msa0540160:CDS 30.0%
!! GTAAATAGTCATTTTAGTCC+TGG + chr4_1:21799580-21799599 Msa0540160:intron 30.0%
! TTGAACTCGAGTTATCATTT+TGG - chr4_1:21799627-21799646 None:intergenic 30.0%
TGTTAACTCTCTAATTCCTA+GGG - chr4_1:21799723-21799742 None:intergenic 30.0%
! GTAGAGATCTTTAGAAGAAT+TGG + chr4_1:21800227-21800246 Msa0540160:intron 30.0%
! AGATCTTTAGAAGAATTGGA+GGG + chr4_1:21800231-21800250 Msa0540160:intron 30.0%
! GATGATATGATGATGATTCT+CGG + chr4_1:21800321-21800340 Msa0540160:intron 30.0%
AAAGAAGTCAATAGTTGTTC+CGG - chr4_1:21800414-21800433 None:intergenic 30.0%
CAGGTTCTTTGTATTAAACA+TGG - chr4_1:21800716-21800735 None:intergenic 30.0%
! ATACATTTTACTCTATGGGA+TGG + chr4_1:21800758-21800777 Msa0540160:intron 30.0%
!!! TTGTTATTTTGTAGGTTCGA+AGG + chr4_1:21800805-21800824 Msa0540160:intron 30.0%
AGTTACATGAAACTTACCAA+AGG - chr4_1:21800932-21800951 None:intergenic 30.0%
!! ACCTGTTTTTCTCTTATTAG+TGG + chr4_1:21801065-21801084 Msa0540160:CDS 30.0%
!! CCTGTTTTTCTCTTATTAGT+GGG + chr4_1:21801066-21801085 Msa0540160:CDS 30.0%
ACTCTCCTTAACTATATTCT+TGG + chr4_1:21801606-21801625 Msa0540160:intron 30.0%
CATTGCCAAGAATATAGTTA+AGG - chr4_1:21801614-21801633 None:intergenic 30.0%
TAGGATGTACAGCAAATTAA+TGG + chr4_1:21801657-21801676 Msa0540160:intron 30.0%
ATTGAAAATGCCACAAAAGA+TGG - chr4_1:21801770-21801789 None:intergenic 30.0%
TACTTGTCTAATTTCTCAGT+TGG + chr4_1:21801807-21801826 Msa0540160:intron 30.0%
TTATGTTGGAAATTGTAGTC+AGG + chr4_1:21802115-21802134 Msa0540160:intron 30.0%
AAAAGATGCAAATACTGTCT+TGG + chr4_1:21802233-21802252 Msa0540160:CDS 30.0%
TAAGACTTCAAAAACCACTT+CGG + chr4_1:21802262-21802281 Msa0540160:intron 30.0%
GTAACAATTTGCACTAAGAA+AGG - chr4_1:21802356-21802375 None:intergenic 30.0%
GTATCTTCACTTCAGAATTA+TGG - chr4_1:21803039-21803058 None:intergenic 30.0%
TAGTCTATGTCTAGATAACA+TGG - chr4_1:21803215-21803234 None:intergenic 30.0%
TAGACATAGACTAATTAGCT+TGG + chr4_1:21803222-21803241 Msa0540160:intron 30.0%
TAATCAAAAGGATCAATTCG+CGG - chr4_1:21803411-21803430 None:intergenic 30.0%
! GGCAATTTGAAATTGTATGA+TGG + chr4_1:21803463-21803482 Msa0540160:three_prime_UTR 30.0%
! ATGTTTCTGTTGTGGAATAA+TGG + chr4_1:21803495-21803514 Msa0540160:three_prime_UTR 30.0%
CCATTCTCAAAAAGTTATCA+TGG - chr4_1:21803709-21803728 None:intergenic 30.0%
!! CCATGATAACTTTTTGAGAA+TGG + chr4_1:21803706-21803725 Msa0540160:three_prime_UTR 30.0%
AGAATGGACACAAGAAATTA+GGG + chr4_1:21803722-21803741 Msa0540160:three_prime_UTR 30.0%
!! TGAAAATGGACTGCACAAAT+TGG - chr4_1:21798989-21799008 None:intergenic 35.0%
GTTTAGTTGAAGACATGTTG+TGG - chr4_1:21799143-21799162 None:intergenic 35.0%
! AGTAGCAGAGTTTTTATCAG+TGG - chr4_1:21799290-21799309 None:intergenic 35.0%
ACTGATAAAAACTCTGCTAC+TGG + chr4_1:21799289-21799308 Msa0540160:CDS 35.0%
CTGATAAAAACTCTGCTACT+GGG + chr4_1:21799290-21799309 Msa0540160:CDS 35.0%
!!! ACCCCCGTTTTAAAAAATGA+TGG + chr4_1:21799349-21799368 Msa0540160:intron 35.0%
GCAAAATCTTGTACAGTTTC+AGG - chr4_1:21799417-21799436 None:intergenic 35.0%
GATGGAACTTCAAGAAATTC+AGG + chr4_1:21799440-21799459 Msa0540160:CDS 35.0%
GATAACTCGAGTTCAATTCT+TGG + chr4_1:21799631-21799650 Msa0540160:intron 35.0%
AGTCTGGTCAAAAATTGTAC+TGG - chr4_1:21799657-21799676 None:intergenic 35.0%
ACCAGACTTTACTTACCTTT+CGG + chr4_1:21799669-21799688 Msa0540160:intron 35.0%
! TCATTCGAAGTTTTTCCGAA+AGG - chr4_1:21799687-21799706 None:intergenic 35.0%
GGAAAAACTTCGAATGACTA+GGG + chr4_1:21799690-21799709 Msa0540160:intron 35.0%
GTTAACTCTCTAATTCCTAG+GGG - chr4_1:21799722-21799741 None:intergenic 35.0%
GTGTTAACTCTCTAATTCCT+AGG - chr4_1:21799724-21799743 None:intergenic 35.0%
AATATTGAATGGACGATGGT+TGG + chr4_1:21799903-21799922 Msa0540160:intron 35.0%
CTTATGTTGGAAACTTTCCT+CGG - chr4_1:21800001-21800020 None:intergenic 35.0%
AGATCATTGGCATCTTATGT+TGG - chr4_1:21800014-21800033 None:intergenic 35.0%
AAGATGCCAATGATCTAAAG+TGG + chr4_1:21800018-21800037 Msa0540160:intron 35.0%
CAAGTTCCACTTTAGATCAT+TGG - chr4_1:21800027-21800046 None:intergenic 35.0%
CTAAAGTGGAACTTGAATGA+TGG + chr4_1:21800032-21800051 Msa0540160:intron 35.0%
! GAGATCTTTAGAAGAATTGG+AGG + chr4_1:21800230-21800249 Msa0540160:intron 35.0%
TCAATTCTTGCCTTGATAAG+TGG + chr4_1:21800282-21800301 Msa0540160:intron 35.0%
! ATATGATGATGATTCTCGGA+GGG + chr4_1:21800325-21800344 Msa0540160:intron 35.0%
CATGAGATTCCAATCCAAAT+GGG + chr4_1:21800376-21800395 Msa0540160:intron 35.0%
TGTGTATATAATCACACTGG+TGG + chr4_1:21800443-21800462 Msa0540160:intron 35.0%
ATAATCACACTGGTGGTTTA+TGG + chr4_1:21800450-21800469 Msa0540160:intron 35.0%
TAATCACACTGGTGGTTTAT+GGG + chr4_1:21800451-21800470 Msa0540160:intron 35.0%
! TTAAGATCACTGTTGCTTGT+AGG + chr4_1:21800509-21800528 Msa0540160:intron 35.0%
! GGAATGAATGATGGGAAATT+AGG - chr4_1:21800899-21800918 None:intergenic 35.0%
GCAAGAATGGAATGAATGAT+GGG - chr4_1:21800907-21800926 None:intergenic 35.0%
TACATGAAACTTACCAAAGG+AGG - chr4_1:21800929-21800948 None:intergenic 35.0%
! TGCTTTCAATTTGAAGTGCT+TGG + chr4_1:21800979-21800998 Msa0540160:intron 35.0%
! AATTTGAAGTGCTTGGCAAA+TGG + chr4_1:21800986-21801005 Msa0540160:intron 35.0%
CCCACTAATAAGAGAAAAAC+AGG - chr4_1:21801069-21801088 None:intergenic 35.0%
!! AGTGGGATAATACTTTTTGG+TGG + chr4_1:21801083-21801102 Msa0540160:CDS 35.0%
AGATCAGTGTTGTCAAATAG+CGG + chr4_1:21801294-21801313 Msa0540160:intron 35.0%
!! AACAAATCGGTGTCAAATAG+AGG + chr4_1:21801351-21801370 Msa0540160:intron 35.0%
GTGTCAAATAGAGGCTATAT+CGG + chr4_1:21801360-21801379 Msa0540160:intron 35.0%
GTGTTGTCAATCATGAATAG+TGG - chr4_1:21801422-21801441 None:intergenic 35.0%
GAATTGTTCAATGTTTGAGC+AGG + chr4_1:21801506-21801525 Msa0540160:intron 35.0%
!! TGGCCAATCCTTTTACTTTT+GGG + chr4_1:21801549-21801568 Msa0540160:intron 35.0%
!!! TAGTTAAGGAGAGTGCTTTT+AGG - chr4_1:21801600-21801619 None:intergenic 35.0%
! TTTGAGGTAGCATGATCAAA+AGG - chr4_1:21801714-21801733 None:intergenic 35.0%
!! GTACAATGTAGTGCTTTTTG+AGG - chr4_1:21801730-21801749 None:intergenic 35.0%
TCTGCGAAGAATAAGTAAAC+AGG - chr4_1:21801933-21801952 None:intergenic 35.0%
TGTTTACTTATTCTTCGCAG+AGG + chr4_1:21801932-21801951 Msa0540160:intron 35.0%
CTGCAAATTATGTCACTAGA+GGG + chr4_1:21802015-21802034 Msa0540160:intron 35.0%
TGGTGTAATCTCTGCATTAA+TGG + chr4_1:21802175-21802194 Msa0540160:CDS 35.0%
GGAATCAAATTTCTGAATGG+TGG + chr4_1:21802299-21802318 Msa0540160:intron 35.0%
GTTACTGCTTTCAACTGTTA+AGG + chr4_1:21802371-21802390 Msa0540160:intron 35.0%
TTCAACTGTTAAGGAGAAGA+TGG + chr4_1:21802380-21802399 Msa0540160:intron 35.0%
!!! GATTATACTTTTGGCTTGTC+AGG + chr4_1:21802499-21802518 Msa0540160:intron 35.0%
! TTTGAACATCTCTCGGTTTT+TGG - chr4_1:21802619-21802638 None:intergenic 35.0%
TTTGGACTGAAGATCACTAA+AGG - chr4_1:21802886-21802905 None:intergenic 35.0%
! AGAGCAATTTTTCACGGTTT+TGG - chr4_1:21802904-21802923 None:intergenic 35.0%
!!! ATGAAATTTTGGTGCCATGT+TGG + chr4_1:21802927-21802946 Msa0540160:intron 35.0%
TATATCTTCGCATACCTTCT+GGG + chr4_1:21803263-21803282 Msa0540160:intron 35.0%
ATTATTGCTACAAACCCAGA+AGG - chr4_1:21803280-21803299 None:intergenic 35.0%
TGATACTGAATTCTGATTGC+AGG + chr4_1:21803332-21803351 Msa0540160:intron 35.0%
!! TTGAAATTGTATGATGGGTG+TGG + chr4_1:21803469-21803488 Msa0540160:three_prime_UTR 35.0%
! TGTGGTATATGTTTCTGTTG+TGG + chr4_1:21803487-21803506 Msa0540160:three_prime_UTR 35.0%
GAGATAAAGATCGAAAGATC+TGG + chr4_1:21803562-21803581 Msa0540160:three_prime_UTR 35.0%
TAAAGGAAACCATTCTGTTC+CGG - chr4_1:21803650-21803669 None:intergenic 35.0%
GAGAATGGACACAAGAAATT+AGG + chr4_1:21803721-21803740 Msa0540160:three_prime_UTR 35.0%
!! AATGGACTGCACAAATTGGT+GGG - chr4_1:21798985-21799004 None:intergenic 40.0%
!! AAATGGACTGCACAAATTGG+TGG - chr4_1:21798986-21799005 None:intergenic 40.0%
GAGAATGGAGGATGTGAAAA+TGG - chr4_1:21799003-21799022 None:intergenic 40.0%
!! GTTGATGGCAAGTTTGAGAA+TGG - chr4_1:21799018-21799037 None:intergenic 40.0%
ATGTTGTGTTTGGGTGTAGT+TGG + chr4_1:21799112-21799131 Msa0540160:CDS 40.0%
CGCAGGTTCTGTATTATAGA+AGG + chr4_1:21799390-21799409 Msa0540160:intron 40.0%
AGGATAATATTCGGAGTCGA+AGG + chr4_1:21799460-21799479 Msa0540160:CDS 40.0%
TCCGAAAGGTAAGTAAAGTC+TGG - chr4_1:21799673-21799692 None:intergenic 40.0%
CGGAAAAACTTCGAATGACT+AGG + chr4_1:21799689-21799708 Msa0540160:intron 40.0%
GTTTATCATAGCCTGTATGC+AGG + chr4_1:21799840-21799859 Msa0540160:intron 40.0%
ACATTCATCTTCCTGCATAC+AGG - chr4_1:21799854-21799873 None:intergenic 40.0%
GAAGATGAAGGGATGATTAC+TGG + chr4_1:21799948-21799967 Msa0540160:intron 40.0%
AGTGGAACTTGAATGATGGT+TGG + chr4_1:21800036-21800055 Msa0540160:intron 40.0%
!! TGAATGATGGTTGGTGATGA+CGG + chr4_1:21800045-21800064 Msa0540160:intron 40.0%
TAGCATTCTGATGCTCAAGT+CGG + chr4_1:21800120-21800139 Msa0540160:intron 40.0%
CTCAAGTCGGTAGAAGATTT+AGG + chr4_1:21800133-21800152 Msa0540160:intron 40.0%
GTAGAAGATTTAGGTGAGTG+AGG + chr4_1:21800142-21800161 Msa0540160:intron 40.0%
AGACGACAATCCACTTATCA+AGG - chr4_1:21800295-21800314 None:intergenic 40.0%
! GATATGATGATGATTCTCGG+AGG + chr4_1:21800324-21800343 Msa0540160:intron 40.0%
GCATGAGATTCCAATCCAAA+TGG + chr4_1:21800375-21800394 Msa0540160:intron 40.0%
AACTGTAGAACACTTTCTCG+CGG - chr4_1:21800573-21800592 None:intergenic 40.0%
GGCAAGAATGGAATGAATGA+TGG - chr4_1:21800908-21800927 None:intergenic 40.0%
AACAGGTTGCATAATACTGC+CGG - chr4_1:21801052-21801071 None:intergenic 40.0%
TAAATCTTACACTCGGAGCA+AGG - chr4_1:21801112-21801131 None:intergenic 40.0%
! TGAATCCGACTCTTTTGTAC+TGG + chr4_1:21801162-21801181 Msa0540160:intron 40.0%
TTGCACCAGTACAAAAGAGT+CGG - chr4_1:21801170-21801189 None:intergenic 40.0%
! GTAGCGGAATTCGAACAAAT+CGG + chr4_1:21801338-21801357 Msa0540160:intron 40.0%
AACACTAGAGAAGAGAGAGA+GGG + chr4_1:21801437-21801456 Msa0540160:intron 40.0%
! CTGGCCAATCCTTTTACTTT+TGG + chr4_1:21801548-21801567 Msa0540160:intron 40.0%
GCACCCAAAAGTAAAAGGAT+TGG - chr4_1:21801555-21801574 None:intergenic 40.0%
TTGGAGCTTAAGCTTGGAAT+AGG + chr4_1:21801826-21801845 Msa0540160:CDS 40.0%
AGGCGACAATAATCAGGAAA+TGG - chr4_1:21801913-21801932 None:intergenic 40.0%
GTAAACAGGCGACAATAATC+AGG - chr4_1:21801919-21801938 None:intergenic 40.0%
GCTGCAAATTATGTCACTAG+AGG + chr4_1:21802014-21802033 Msa0540160:intron 40.0%
TGTTGTCAGATCATCACTCT+TGG + chr4_1:21802047-21802066 Msa0540160:intron 40.0%
!! TAGTCAGGTTGATCCTATTG+TGG + chr4_1:21802130-21802149 Msa0540160:intron 40.0%
TGCAAATACTGTCTTGGTAC+TGG + chr4_1:21802239-21802258 Msa0540160:CDS 40.0%
AAAAATGCAGATCTCCGAAG+TGG - chr4_1:21802279-21802298 None:intergenic 40.0%
! ACTTCGGAGATCTGCATTTT+TGG + chr4_1:21802278-21802297 Msa0540160:intron 40.0%
GAAGATGGCAAAGCAAAAAC+TGG + chr4_1:21802395-21802414 Msa0540160:intron 40.0%
ATGTGCTCGATGTTCAAACA+CGG + chr4_1:21802531-21802550 Msa0540160:CDS 40.0%
!!! TCGGTTTTTGGTGGTGATAA+AGG - chr4_1:21802607-21802626 None:intergenic 40.0%
GGAGCAATTTGAACATCTCT+CGG - chr4_1:21802626-21802645 None:intergenic 40.0%
GAGAGATGTTCAAATTGCTC+CGG + chr4_1:21802625-21802644 Msa0540160:CDS 40.0%
CTTCCAAAATAAGGCCAACA+TGG - chr4_1:21802944-21802963 None:intergenic 40.0%
! GGCATCGAACTTCCAAAATA+AGG - chr4_1:21802953-21802972 None:intergenic 40.0%
ATTGTACCCGAGTGTTAGTA+AGG - chr4_1:21803137-21803156 None:intergenic 40.0%
ACTAACACTCGGGTACAATT+TGG + chr4_1:21803138-21803157 Msa0540160:intron 40.0%
CTATATCTTCGCATACCTTC+TGG + chr4_1:21803262-21803281 Msa0540160:intron 40.0%
TATCCATATTCCCAGAGAGA+TGG + chr4_1:21803588-21803607 Msa0540160:three_prime_UTR 40.0%
! TATCCATCTCTCTGGGAATA+TGG - chr4_1:21803594-21803613 None:intergenic 40.0%
GGTATCTTATCCATCTCTCT+GGG - chr4_1:21803601-21803620 None:intergenic 40.0%
AGGTATCTTATCCATCTCTC+TGG - chr4_1:21803602-21803621 None:intergenic 40.0%
AAAGGAAACCATTCTGTTCC+GGG - chr4_1:21803649-21803668 None:intergenic 40.0%
! ATGGACTGCACAAATTGGTG+GGG - chr4_1:21798984-21799003 None:intergenic 45.0%
GATGGCAAGTTTGAGAATGG+AGG - chr4_1:21799015-21799034 None:intergenic 45.0%
TTGTGTTTGGGTGTAGTTGG+TGG + chr4_1:21799115-21799134 Msa0540160:CDS 45.0%
TGTGTTTGGGTGTAGTTGGT+GGG + chr4_1:21799116-21799135 Msa0540160:CDS 45.0%
GATGAAGGGATGATTACTGG+TGG + chr4_1:21799951-21799970 Msa0540160:intron 45.0%
TGGAAACTTTCCTCGGTCAA+AGG - chr4_1:21799994-21800013 None:intergenic 45.0%
!! TTGGTGATGACGGAACATAG+TGG + chr4_1:21800055-21800074 Msa0540160:intron 45.0%
TTGACGATTGATCTCTGGCT+TGG + chr4_1:21800084-21800103 Msa0540160:intron 45.0%
TTGAGCATCAGAATGCTAGC+AGG - chr4_1:21800118-21800137 None:intergenic 45.0%
ATTCCAATCCAAATGGGCCT+TGG + chr4_1:21800382-21800401 Msa0540160:intron 45.0%
CATTCCATTCTTGCCTCCTT+TGG + chr4_1:21800913-21800932 Msa0540160:CDS 45.0%
CTTACCAAAGGAGGCAAGAA+TGG - chr4_1:21800920-21800939 None:intergenic 45.0%
AAAGAGTCGGATTCACATCG+AGG - chr4_1:21801157-21801176 None:intergenic 45.0%
!! GTGCTATAGCACTGATGAGT+AGG + chr4_1:21801382-21801401 Msa0540160:intron 45.0%
CAACACTAGAGAAGAGAGAG+AGG + chr4_1:21801436-21801455 Msa0540160:intron 45.0%
CCAGCAACAGCAATAGCATA+GGG - chr4_1:21801532-21801551 None:intergenic 45.0%
GCAACGCACCCAAAAGTAAA+AGG - chr4_1:21801560-21801579 None:intergenic 45.0%
TCTCAGTTGGAGCTTAAGCT+TGG + chr4_1:21801820-21801839 Msa0540160:intron 45.0%
GAGCTTAAGCTTGGAATAGG+TGG + chr4_1:21801829-21801848 Msa0540160:CDS 45.0%
CCAGAGAATGATGCCACAAT+AGG - chr4_1:21802146-21802165 None:intergenic 45.0%
CCTATTGTGGCATCATTCTC+TGG + chr4_1:21802143-21802162 Msa0540160:CDS 45.0%
ATTGTGGCATCATTCTCTGG+TGG + chr4_1:21802146-21802165 Msa0540160:CDS 45.0%
! ATGGTGGAACTGAAGCGTTA+TGG + chr4_1:21802315-21802334 Msa0540160:intron 45.0%
TGTGCTCGATGTTCAAACAC+GGG + chr4_1:21802532-21802551 Msa0540160:CDS 45.0%
AGCACTTGTCCTGATTGAAC+CGG + chr4_1:21802555-21802574 Msa0540160:CDS 45.0%
!! GAACATCTCTCGGTTTTTGG+TGG - chr4_1:21802616-21802635 None:intergenic 45.0%
TGTTCAAATTGCTCCGGATC+TGG + chr4_1:21802631-21802650 Msa0540160:CDS 45.0%
!!! GTGCCATGTTGGCCTTATTT+TGG + chr4_1:21802938-21802957 Msa0540160:intron 45.0%
GCAGAGGTCTAACGACAAAA+AGG - chr4_1:21803115-21803134 None:intergenic 45.0%
ACCTCTGCCTTACTAACACT+CGG + chr4_1:21803127-21803146 Msa0540160:intron 45.0%
TCAAGGGAACAATGTTGACG+TGG - chr4_1:21803164-21803183 None:intergenic 45.0%
TGTCCAACATGTCTTTGCAC+CGG + chr4_1:21803360-21803379 Msa0540160:CDS 45.0%
ATTCCGGTGCAAAGACATGT+TGG - chr4_1:21803366-21803385 None:intergenic 45.0%
AACATGTCTTTGCACCGGAA+TGG + chr4_1:21803365-21803384 Msa0540160:CDS 45.0%
ATCAAGATGGAACTGAGTCG+AGG - chr4_1:21803622-21803641 None:intergenic 45.0%
AGTTCCATCTTGATACCACC+CGG + chr4_1:21803628-21803647 Msa0540160:three_prime_UTR 45.0%
!! AAAAATTAAATTTAAAAAAG+TGG + chr4_1:21803063-21803082 Msa0540160:intron 5.0%
CAATAAGAGGTGGCGTGTCA+TGG + chr4_1:21799207-21799226 Msa0540160:CDS 50.0%
AGGGATGATTACTGGTGGCA+AGG + chr4_1:21799956-21799975 Msa0540160:intron 50.0%
GGGATGATTACTGGTGGCAA+GGG + chr4_1:21799957-21799976 Msa0540160:intron 50.0%
ATTACTGGTGGCAAGGGAAG+TGG + chr4_1:21799963-21799982 Msa0540160:intron 50.0%
AGTGGAAACTCCTTTGACCG+AGG + chr4_1:21799981-21800000 Msa0540160:intron 50.0%
!! GTGATGACGGAACATAGTGG+AGG + chr4_1:21800058-21800077 Msa0540160:intron 50.0%
! ATGACGGAACATAGTGGAGG+AGG + chr4_1:21800061-21800080 Msa0540160:intron 50.0%
GGAGGTTGACGATTGATCTC+TGG + chr4_1:21800079-21800098 Msa0540160:intron 50.0%
!! CGATTGATCTCTGGCTTGGA+TGG + chr4_1:21800088-21800107 Msa0540160:intron 50.0%
TGATGTGTACCTTGCTCCTG+AGG + chr4_1:21800182-21800201 Msa0540160:intron 50.0%
GATGTGTACCTTGCTCCTGA+GGG + chr4_1:21800183-21800202 Msa0540160:intron 50.0%
GCGTCTTCTCACGTACTCAA+TGG - chr4_1:21800262-21800281 None:intergenic 50.0%
TGCAGACTTCAGCAAACCTC+CGG + chr4_1:21801030-21801049 Msa0540160:CDS 50.0%
AGGTTGCATAATACTGCCGG+AGG - chr4_1:21801049-21801068 None:intergenic 50.0%
! CCCTATGCTATTGCTGTTGC+TGG + chr4_1:21801529-21801548 Msa0540160:intron 50.0%
GCCAGCAACAGCAATAGCAT+AGG - chr4_1:21801533-21801552 None:intergenic 50.0%
TGCATCTGCCTATGCAGTTG+AGG + chr4_1:21801881-21801900 Msa0540160:CDS 50.0%
TCATTCTCTGGTGGAGCTGT+TGG + chr4_1:21802155-21802174 Msa0540160:CDS 50.0%
!! AGGAGGATACCGGTTCAATC+AGG - chr4_1:21802567-21802586 None:intergenic 50.0%
GAACCGGTATCCTCCTTCAA+TGG + chr4_1:21802571-21802590 Msa0540160:CDS 50.0%
CCACCATTGAAGGAGGATAC+CGG - chr4_1:21802577-21802596 None:intergenic 50.0%
CTGATCTCCACCATTGAAGG+AGG - chr4_1:21802584-21802603 None:intergenic 50.0%
AGGCTGATCTCCACCATTGA+AGG - chr4_1:21802587-21802606 None:intergenic 50.0%
AAATTGCTCCGGATCTGGCA+AGG + chr4_1:21802636-21802655 Msa0540160:CDS 50.0%
ATGTCCAACCTTGCCAGATC+CGG - chr4_1:21802647-21802666 None:intergenic 50.0%
CCTCTGCCTTACTAACACTC+GGG + chr4_1:21803128-21803147 Msa0540160:intron 50.0%
TCTTTGCACCGGAATGGCTA+TGG + chr4_1:21803371-21803390 Msa0540160:CDS 50.0%
TTCGCTTGCCATAGCCATTC+CGG - chr4_1:21803382-21803401 None:intergenic 50.0%
TGTTCCGGGTGGTATCAAGA+TGG - chr4_1:21803635-21803654 None:intergenic 50.0%
TGATACCACCCGGAACAGAA+TGG + chr4_1:21803638-21803657 Msa0540160:three_prime_UTR 50.0%
TGACTAGGGACACTTCCCCT+AGG + chr4_1:21799704-21799723 Msa0540160:intron 55.0%
GAGCCAAGGCCCATTTGGAT+TGG - chr4_1:21800388-21800407 None:intergenic 55.0%
AAATGGGCCTTGGCTCAGTC+CGG + chr4_1:21800392-21800411 Msa0540160:intron 55.0%
AGTTGTTCCGGACTGAGCCA+AGG - chr4_1:21800402-21800421 None:intergenic 55.0%
GGACGCTACCTCAACTGCAT+AGG - chr4_1:21801892-21801911 None:intergenic 55.0%
CCGGTATCCTCCTTCAATGG+TGG + chr4_1:21802574-21802593 Msa0540160:CDS 55.0%
CCCGAGTGTTAGTAAGGCAG+AGG - chr4_1:21803131-21803150 None:intergenic 55.0%
GGAAACCATTCTGTTCCGGG+TGG - chr4_1:21803646-21803665 None:intergenic 55.0%
ACCTTGCTCCTGAGGGAGTG+AGG + chr4_1:21800190-21800209 Msa0540160:intron 60.0%
CCTTGCTCCTGAGGGAGTGA+GGG + chr4_1:21800191-21800210 Msa0540160:intron 60.0%
GGACTGAGCCAAGGCCCATT+TGG - chr4_1:21800393-21800412 None:intergenic 60.0%
TGCTCCGGATCTGGCAAGGT+TGG + chr4_1:21802640-21802659 Msa0540160:intron 60.0%
CCCTCACTCCCTCAGGAGCA+AGG - chr4_1:21800194-21800213 None:intergenic 65.0%
TGCTCCTGAGGGAGTGAGGG+AGG + chr4_1:21800194-21800213 Msa0540160:intron 65.0%
AGGACCTCCCTCACTCCCTC+AGG - chr4_1:21800201-21800220 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 21798881 21803795 21798881 ID=Msa0540160;Name=Msa0540160
chr4_1 mRNA 21798881 21803795 21798881 ID=Msa0540160-mRNA-1;Parent=Msa0540160;Name=Msa0540160-mRNA-1;_AED=0.25;_eAED=0.26;_QI=228|0.85|0.87|1|0.71|0.87|8|364|326
chr4_1 exon 21798881 21799311 21798881 ID=Msa0540160-mRNA-1:exon:6184;Parent=Msa0540160-mRNA-1
chr4_1 exon 21799395 21799509 21799395 ID=Msa0540160-mRNA-1:exon:6185;Parent=Msa0540160-mRNA-1
chr4_1 exon 21800819 21800934 21800819 ID=Msa0540160-mRNA-1:exon:6186;Parent=Msa0540160-mRNA-1
chr4_1 exon 21800995 21801121 21800995 ID=Msa0540160-mRNA-1:exon:6187;Parent=Msa0540160-mRNA-1
chr4_1 exon 21801826 21801902 21801826 ID=Msa0540160-mRNA-1:exon:6188;Parent=Msa0540160-mRNA-1
chr4_1 exon 21802133 21802260 21802133 ID=Msa0540160-mRNA-1:exon:6189;Parent=Msa0540160-mRNA-1
chr4_1 exon 21802521 21802657 21802521 ID=Msa0540160-mRNA-1:exon:6190;Parent=Msa0540160-mRNA-1
chr4_1 exon 21803354 21803795 21803354 ID=Msa0540160-mRNA-1:exon:6191;Parent=Msa0540160-mRNA-1
chr4_1 five_prime_UTR 21798881 21799108 21798881 ID=Msa0540160-mRNA-1:five_prime_utr;Parent=Msa0540160-mRNA-1
chr4_1 CDS 21799109 21799311 21799109 ID=Msa0540160-mRNA-1:cds;Parent=Msa0540160-mRNA-1
chr4_1 CDS 21799395 21799509 21799395 ID=Msa0540160-mRNA-1:cds;Parent=Msa0540160-mRNA-1
chr4_1 CDS 21800819 21800934 21800819 ID=Msa0540160-mRNA-1:cds;Parent=Msa0540160-mRNA-1
chr4_1 CDS 21800995 21801121 21800995 ID=Msa0540160-mRNA-1:cds;Parent=Msa0540160-mRNA-1
chr4_1 CDS 21801826 21801902 21801826 ID=Msa0540160-mRNA-1:cds;Parent=Msa0540160-mRNA-1
chr4_1 CDS 21802133 21802260 21802133 ID=Msa0540160-mRNA-1:cds;Parent=Msa0540160-mRNA-1
chr4_1 CDS 21802521 21802657 21802521 ID=Msa0540160-mRNA-1:cds;Parent=Msa0540160-mRNA-1
chr4_1 CDS 21803354 21803431 21803354 ID=Msa0540160-mRNA-1:cds;Parent=Msa0540160-mRNA-1
chr4_1 three_prime_UTR 21803432 21803795 21803432 ID=Msa0540160-mRNA-1:three_prime_utr;Parent=Msa0540160-mRNA-1
Gene Sequence

>Msa0540160

ATGATGTTGTGTTTGGGTGTAGTTGGTGGGTCCACAACATGTCTTCAACTAAACAACACCAAAAGATTCATTCATCTAAATAATAAGAAAAACAGTTTCAATAAGAGGTGGCGTGTCATGGCACTTGAATTTGAATCAGACTCTTCTTCTTTTGCATCTTCTATTGATTCTTCTGATACCACTGATAAAAACTCTGCTACTGGGTTCTGTATTATAGAAGGACCTGAAACTGTACAAGATTTTGCTAAGATGGAACTTCAAGAAATTCAGGATAATATTCGGAGTCGAAGGAATAAGATTTTTTTACATATGGAAGAGGTTCGAAGGCTTAGAATACAGCAAAGAATTAAAAATGCTGAACTTGGAATTTTTAAAGAAGAGCAAGAAATGAACTTCCTAATTTCCCATCATTCATTCCATTCTTGCCTCCTTTGTGCTTGGCAAATGGTAATCAACTACATGTGTTATTTGCAGACTTCAGCAAACCTCCGGCAGTATTATGCAACCTGTTTTTCTCTTATTAGTGGGATAATACTTTTTGGTGGTCTCCTTGCTCCGAGTTTGGAGCTTAAGCTTGGAATAGGTGGCACATCTTATGCAGATTTTATTCAAAATATGCATCTGCCTATGCAGTTGAGTCAGGTTGATCCTATTGTGGCATCATTCTCTGGTGGAGCTGTTGGTGTAATCTCTGCATTAATGGTTGTTGAGATAAACAATGTAAAACAACAGGAACAGAAAAGATGCAAATACTGTCTTGGTACTGGATATCTTGCATGTGCTCGATGTTCAAACACGGGAGCACTTGTCCTGATTGAACCGGTATCCTCCTTCAATGGTGGAGATCAGCCTTTATCACCACCAAAAACCGAGAGATGTTCAAATTGCTCCGGATCTGGCAAGGTCATGTGTCCAACATGTCTTTGCACCGGAATGGCTATGGCAAGCGAACATGATCCGCGAATTGATCCTTTTGATTAG

Protein sequence

>Msa0540160

MMLCLGVVGGSTTCLQLNNTKRFIHLNNKKNSFNKRWRVMALEFESDSSSFASSIDSSDTTDKNSATGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGIFKEEQEMNFLISHHSFHSCLLCAWQMVINYMCYLQTSANLRQYYATCFSLISGIILFGGLLAPSLELKLGIGGTSYADFIQNMHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEQKRCKYCLGTGYLACARCSNTGALVLIEPVSSFNGGDQPLSPPKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD*