AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1026710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1026710 MtrunA17_Chr1g0208141 99.329 596 4 0 3 598 2 597 0.0 1188
Msa1026710 MtrunA17_Chr4g0000511 78.532 545 117 0 54 598 86 630 0.0 898
Msa1026710 MtrunA17_Chr3g0077771 31.621 253 155 5 119 355 117 367 3.08e-29 119
Msa1026710 MtrunA17_Chr4g0004721 28.235 255 174 4 119 372 68 314 1.35e-28 116
Msa1026710 MtrunA17_Chr4g0004711 28.794 257 168 5 120 372 68 313 3.15e-28 115
Msa1026710 MtrunA17_Chr1g0210971 33.910 289 161 8 97 360 63 346 1.01e-27 115
Msa1026710 MtrunA17_Chr4g0004681 26.772 254 176 4 119 372 67 310 5.78e-26 108
Msa1026710 MtrunA17_Chr6g0450811 30.924 249 162 4 120 361 122 367 1.35e-23 103
Msa1026710 MtrunA17_Chr4g0004741 29.297 256 170 6 119 372 67 313 3.59e-21 94.7
Msa1026710 MtrunA17_Chr8g0351111 28.788 264 171 5 120 379 76 326 5.84e-21 94.4
Msa1026710 MtrunA17_Chr2g0331641 28.462 260 168 7 119 372 67 314 1.02e-19 90.5
Msa1026710 MtrunA17_Chr6g0450821 28.629 248 150 5 120 361 92 318 2.39e-18 86.7
Msa1026710 MtrunA17_Chr8g0351141 25.197 254 177 5 120 367 79 325 3.20e-17 83.2
Msa1026710 MtrunA17_Chr8g0351121 26.482 253 173 6 99 346 93 337 4.68e-17 83.2
Msa1026710 MtrunA17_Chr7g0246361 29.911 224 138 8 120 341 57 263 2.51e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1026710 AT4G34200.1 83.390 584 93 2 19 598 20 603 0.0 982
Msa1026710 AT3G19480.1 82.155 566 99 1 35 598 23 588 0.0 941
Msa1026710 AT1G17745.1 78.269 543 118 0 56 598 82 624 0.0 885
Msa1026710 AT1G17745.2 74.211 570 120 2 56 598 82 651 0.0 863
Msa1026710 AT1G72190.1 29.181 281 183 5 76 347 77 350 1.14e-27 115
Msa1026710 AT5G14780.2 31.667 240 160 3 126 361 112 351 5.53e-27 113
Msa1026710 AT5G14780.3 31.667 240 160 3 126 361 100 339 8.23e-27 112
Msa1026710 AT1G79870.1 28.627 255 171 6 120 372 68 313 1.07e-26 111
Msa1026710 AT5G14780.1 31.667 240 160 3 126 361 126 365 1.34e-26 112
Msa1026710 AT1G68010.1 32.753 287 167 7 97 360 63 346 3.92e-25 108
Msa1026710 AT1G68010.2 32.986 288 166 8 97 360 63 347 1.23e-23 103
Msa1026710 AT1G68010.3 32.482 274 159 7 97 347 63 333 1.42e-23 103
Msa1026710 AT1G12550.1 28.631 241 165 4 120 358 75 310 1.62e-23 102
Msa1026710 AT2G45630.2 28.125 256 173 6 120 372 91 338 3.95e-22 98.6
Msa1026710 AT1G79870.2 27.559 254 156 6 120 372 68 294 2.66e-21 95.1

Find 205 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATCATTGAGCATCTTAT+TGG 0.186509 7_1:-58889910 None:intergenic
GGCGGAGGAGAGAGGGAGTT+TGG 0.212385 7_1:-58888638 None:intergenic
CAACTCATCAAGTGAAGTTT+TGG 0.231840 7_1:-58888478 None:intergenic
CTTGTTAGAGCATTGGATTC+TGG 0.237598 7_1:+58890005 Msa1026710:CDS
GTGAAGGGAGACGGAGGGTT+TGG 0.252825 7_1:-58888594 None:intergenic
ACACTTGCTGTAATGGGATT+TGG 0.255805 7_1:+58889711 Msa1026710:CDS
GCTAGTGCCATATCAGATTC+AGG 0.283199 7_1:+58891224 Msa1026710:CDS
CATAACCAACTTGCTGTCTT+TGG 0.290705 7_1:-58890159 None:intergenic
GTTCACGAAAACACTGGATA+TGG 0.294301 7_1:-58891069 None:intergenic
TGGAATGAATTGTGATTTAC+TGG 0.300026 7_1:+58891706 Msa1026710:three_prime_UTR
CAAGCGAGTAGGTGAGTTTA+GGG 0.302152 7_1:+58891655 Msa1026710:three_prime_UTR
TGTTGATCTTGCTGAGAAAC+TGG 0.306465 7_1:+58890911 Msa1026710:CDS
ACAAGCGAGTAGGTGAGTTT+AGG 0.325630 7_1:+58891654 Msa1026710:three_prime_UTR
TGAAGGGAGACGGAGGGTTT+GGG 0.332772 7_1:-58888593 None:intergenic
AAGGTAGCATTATACTTTGC+AGG 0.338794 7_1:+58891330 Msa1026710:CDS
CGTGAAGTGTTTGAATCTTC+CGG 0.339399 7_1:+58888895 Msa1026710:CDS
CACTTGCTGTAATGGGATTT+GGG 0.344965 7_1:+58889712 Msa1026710:CDS
GGAGTTTGGAGGAGAGAGAA+AGG 0.350829 7_1:-58888624 None:intergenic
GCTGATCGTGCTCATGCTAT+TGG 0.358730 7_1:+58889810 Msa1026710:CDS
GAGGAGAGAGTTATTCTTGA+TGG 0.369656 7_1:+58891140 Msa1026710:CDS
TCTAACTCCTTTCTTCATCT+TGG 0.371423 7_1:-58889940 None:intergenic
GGGAAGACACTTGCTGTAAT+GGG 0.381131 7_1:+58889705 Msa1026710:CDS
GACCTCCCCTGAATCTGATA+TGG 0.384239 7_1:-58891231 None:intergenic
ACATGGTCAATACAGGGAAA+TGG 0.390332 7_1:+58889649 Msa1026710:intron
GAAGACGACGAGGGAACGGC+GGG 0.395159 7_1:-58888689 None:intergenic
AGCATCACAGAGAGAGATCT+TGG 0.396721 7_1:-58888842 None:intergenic
GCGGAGAGAGACGGAGAAGG+CGG 0.399759 7_1:-58888656 None:intergenic
GAGATTCCACGTTAGCAATC+TGG 0.405437 7_1:-58891196 None:intergenic
AGACGAGTGTCAAGATCATC+AGG 0.412057 7_1:-58891011 None:intergenic
CCCACCTTTCCAATCATACC+TGG 0.415387 7_1:-58891365 None:intergenic
ATCTTGGTGCAAAGCTCCTC+AGG 0.418039 7_1:-58888826 None:intergenic
CCACGTTAGCAATCTGGACT+TGG 0.423183 7_1:-58891190 None:intergenic
CAACGATGGTACATCAAAAC+CGG 0.424053 7_1:-58891630 None:intergenic
TGGGAAGACACTTGCTGTAA+TGG 0.425768 7_1:+58889704 Msa1026710:CDS
GGAAAGGTGGGAAGCATCTT+GGG 0.427465 7_1:+58891377 Msa1026710:CDS
GGAAAAGAATAATGTAACTT+TGG 0.427968 7_1:+58891686 Msa1026710:three_prime_UTR
TATGTTGGAGTTTCCCTAGT+TGG 0.429161 7_1:+58889684 Msa1026710:CDS
GTAGATCAACCAGGTATGAT+TGG 0.432608 7_1:+58891356 Msa1026710:CDS
CAGCAAGTGTCTTCCCAACT+AGG 0.432947 7_1:-58889698 None:intergenic
GGGAAGATGGTGAAGGGAGA+CGG 0.433199 7_1:-58888603 None:intergenic
AAATAGCAGAAGCTGTCGTT+GGG 0.435352 7_1:+58890345 Msa1026710:CDS
CACGGGATCGCGCTCTTAGC+TGG 0.436535 7_1:+58889042 Msa1026710:CDS
CTCAAGGTTGTTGGTAGAGC+TGG 0.437574 7_1:+58888925 Msa1026710:CDS
TGGAAAGGTGGGAAGCATCT+TGG 0.437963 7_1:+58891376 Msa1026710:CDS
CGCTACCGAACATGGTTGCT+TGG 0.440707 7_1:+58888978 Msa1026710:CDS
CATGGTCAATACAGGGAAAT+GGG 0.442636 7_1:+58889650 Msa1026710:intron
GAGGAGAGAGAAAGGGAAGA+TGG 0.443990 7_1:-58888616 None:intergenic
AAACACTTCACGTGAGACTT+TGG 0.446385 7_1:-58888884 None:intergenic
GGAAGTAGCGTTAGCGGCGG+CGG 0.448739 7_1:-58888572 None:intergenic
GGGTAGGTTGGCTGTCCAAC+TGG 0.450313 7_1:+58890932 Msa1026710:CDS
TTCAGGGGAGGTCACGGTGG+AGG 0.452073 7_1:+58891241 Msa1026710:CDS
ATGTTGGAGTTTCCCTAGTT+GGG 0.453564 7_1:+58889685 Msa1026710:CDS
AACCAACTTGCTGTCTTTGG+TGG 0.455394 7_1:-58890156 None:intergenic
GCTGAAAAGCTCGGCGAAGC+TGG 0.458612 7_1:+58888751 Msa1026710:CDS
ATGAATTCAAGTGGATTCTC+AGG 0.462448 7_1:-58891167 None:intergenic
AAAGAATCTTTGCAAAGGAT+TGG 0.466060 7_1:+58891494 Msa1026710:CDS
AAGCAGGCTGTGATGGCAAT+TGG 0.470416 7_1:+58891452 Msa1026710:CDS
GCACGATCAGCAGGAGCATA+AGG 0.471790 7_1:-58889798 None:intergenic
AACAACCAAGCAACCATGTT+CGG 0.472937 7_1:-58888983 None:intergenic
GTAATGGGATTTGGGAAGGT+TGG 0.474064 7_1:+58889720 Msa1026710:CDS
GGATGCACTTGTTAGAGCAT+TGG 0.476077 7_1:+58889998 Msa1026710:CDS
CTGTCGTTGGGGCTTTGAAA+GGG 0.476987 7_1:+58890357 Msa1026710:CDS
GGATTCTGGAATTGTAGCTC+AGG 0.477094 7_1:+58890019 Msa1026710:CDS
GGAGGAGAGAGGGAGTTTGG+AGG 0.479184 7_1:-58888635 None:intergenic
GAGAGAGACGGAGAAGGCGG+AGG 0.480445 7_1:-58888653 None:intergenic
ACATTTAATCTTACAACTTG+AGG 0.482522 7_1:-58891547 None:intergenic
TTGAGCATCTTATTGGTAGC+AGG 0.483290 7_1:-58889903 None:intergenic
AAGATCCAACCTTTGTAAGA+TGG 0.485383 7_1:-58891286 None:intergenic
GTAACTTACCTGAGCTTCCA+TGG 0.486993 7_1:-58890222 None:intergenic
TTCTCAGCAAGATCAACAAA+TGG 0.487878 7_1:-58890906 None:intergenic
TGCTAAGGGGCTTGGTATGA+AGG 0.488921 7_1:+58889761 Msa1026710:CDS
AGATCCAACCTTTGTAAGAT+GGG 0.489776 7_1:-58891285 None:intergenic
TGGGAGAGAAGTAAGTATGT+TGG 0.490032 7_1:+58889669 Msa1026710:CDS
GCTAGGCGTGCTAAGGGGCT+TGG 0.491466 7_1:+58889753 Msa1026710:CDS
AAAACAAATTCTTCAACAGC+AGG 0.493626 7_1:-58891524 None:intergenic
TTATTGGTAGCAGGCGTAAG+AGG 0.493736 7_1:-58889894 None:intergenic
CGAAGACGACGAGGGAACGG+CGG 0.494219 7_1:-58888690 None:intergenic
CGGAGAAGGCGGAGGAGAGA+GGG 0.496667 7_1:-58888645 None:intergenic
GCCATCACAGCCTGCTTGCG+TGG 0.497834 7_1:-58891446 None:intergenic
ATTTGGGAAGGTTGGAACTG+AGG 0.497988 7_1:+58889728 Msa1026710:CDS
AGACGAAGACGACGAGGGAA+CGG 0.498132 7_1:-58888693 None:intergenic
TGCCAGTACCATGGAAGCTC+AGG 0.500424 7_1:+58890214 Msa1026710:CDS
GGTTTGGGAAGTAGCGTTAG+CGG 0.502137 7_1:-58888578 None:intergenic
GAAATAGCAGAAGCTGTCGT+TGG 0.503793 7_1:+58890344 Msa1026710:CDS
TCCACGCAAGCAGGCTGTGA+TGG 0.504167 7_1:+58891445 Msa1026710:CDS
AAGATGGTGAAGGGAGACGG+AGG 0.504509 7_1:-58888600 None:intergenic
CATGGCTAGAAATGTTGCTC+AGG 0.505750 7_1:+58889065 Msa1026710:CDS
TTCACGAAAACACTGGATAT+GGG 0.506220 7_1:-58891068 None:intergenic
GTTACTGCAACACCTCATCT+TGG 0.506235 7_1:+58890191 Msa1026710:CDS
GGGTTTAGAGTCGAGGGAAG+AGG 0.506860 7_1:-58888716 None:intergenic
TGAGGTTGCTAGGCGTGCTA+AGG 0.507332 7_1:+58889746 Msa1026710:CDS
GGTGGAAGACTCAAGGTTGT+TGG 0.507539 7_1:+58888916 Msa1026710:CDS
TACCTGAGCTTCCATGGTAC+TGG 0.508674 7_1:-58890216 None:intergenic
TTGGCTGTCCAACTGGTAGC+AGG 0.509470 7_1:+58890939 Msa1026710:CDS
GAGTTTGGAGGAGAGAGAAA+GGG 0.509782 7_1:-58888623 None:intergenic
ATATGTCTGGCTGATGTGCC+CGG 0.510140 7_1:+58891611 Msa1026710:three_prime_UTR
TGGTATTGATAACGTGGATC+TGG 0.510283 7_1:+58888951 Msa1026710:CDS
AGAGAAAGGGAAGATGGTGA+AGG 0.510419 7_1:-58888610 None:intergenic
CTGGCCGCCGCTACCGAACA+TGG 0.510644 7_1:+58888970 Msa1026710:CDS
GCTGTCGTTGGGGCTTTGAA+AGG 0.514440 7_1:+58890356 Msa1026710:CDS
AACTTGCTGTCTTTGGTGGG+TGG 0.516646 7_1:-58890152 None:intergenic
TGCTGAGAAACTGGGTAGGT+TGG 0.518778 7_1:+58890920 Msa1026710:CDS
TCAGGGGAGGTCACGGTGGA+GGG 0.520156 7_1:+58891242 Msa1026710:CDS
CTAGTGCCATATCAGATTCA+GGG 0.520803 7_1:+58891225 Msa1026710:CDS
AGCGGCGGCAACAGTGTTAG+CGG 0.522757 7_1:-58889016 None:intergenic
AGCGAGTAGGTGAGTTTAGG+GGG 0.522975 7_1:+58891657 Msa1026710:three_prime_UTR
CGGCCATGTTTATGTTTGAG+AGG 0.523214 7_1:-58888552 None:intergenic
GAGGTTGCTAGGCGTGCTAA+GGG 0.523235 7_1:+58889747 Msa1026710:CDS
GAGAAAGGGAAGATGGTGAA+GGG 0.525178 7_1:-58888609 None:intergenic
CTTGATAACAGTCACAAGAC+AGG 0.526093 7_1:-58888438 None:intergenic
AGACGACGAGGGAACGGCGG+GGG 0.527589 7_1:-58888687 None:intergenic
CTCCTCAGGAGTGAGATTGT+AGG 0.528475 7_1:-58888812 None:intergenic
ACCAGGTATGATTGGAAAGG+TGG 0.534240 7_1:+58891364 Msa1026710:CDS
AAGGATTGCTCCACGCAAGC+AGG 0.534675 7_1:+58891436 Msa1026710:CDS
CGCGATCCCGTGTTCAGCGG+CGG 0.534842 7_1:-58889031 None:intergenic
ATAGCATGAGCACGATCAGC+AGG 0.535627 7_1:-58889807 None:intergenic
CTGTTGCCGCCGCTGAACAC+GGG 0.536140 7_1:+58889025 Msa1026710:CDS
ACGGAGAAGGCGGAGGAGAG+AGG 0.539989 7_1:-58888646 None:intergenic
CGCTTCCTCCTGCTACCAGT+TGG 0.547036 7_1:-58890947 None:intergenic
AGGTTGGAACTGAGGTTGCT+AGG 0.547137 7_1:+58889736 Msa1026710:CDS
ACCAACTTGCTGTCTTTGGT+GGG 0.548749 7_1:-58890155 None:intergenic
CAAGCAACCATGTTCGGTAG+CGG 0.550793 7_1:-58888977 None:intergenic
GCTGATGCTTCTATCAAAGC+TGG 0.551395 7_1:+58889087 Msa1026710:CDS
GGGGCGGAGAGAGACGGAGA+AGG 0.551469 7_1:-58888659 None:intergenic
ACTGTTGCCGCCGCTGAACA+CGG 0.551728 7_1:+58889024 Msa1026710:CDS
CCAAGTCCAGATTGCTAACG+TGG 0.553204 7_1:+58891190 Msa1026710:CDS
TACTGCAGTCAATGCACCAA+TGG 0.553293 7_1:+58890391 Msa1026710:CDS
ATCAGATTCAGGGGAGGTCA+CGG 0.555338 7_1:+58891235 Msa1026710:CDS
CACGGTGGAGGGTCGTGTGA+AGG 0.556967 7_1:+58891253 Msa1026710:CDS
TGCTGTAATGGGATTTGGGA+AGG 0.561363 7_1:+58889716 Msa1026710:CDS
CTTCGTGCTATGATAACAAA+GGG 0.568014 7_1:+58891035 Msa1026710:CDS
CTTTGCAAAGATTCTTTGCG+TGG 0.570600 7_1:-58891488 None:intergenic
AAGTGACTTACGCTTCCGCT+AGG 0.571734 7_1:+58890985 Msa1026710:CDS
TAAAGGGAATAACAGTGTGT+TGG 0.572631 7_1:+58891767 Msa1026710:three_prime_UTR
GAAGTTGATGTGAGTTTGGA+AGG 0.575576 7_1:+58891311 Msa1026710:CDS
ATCTTCCGGTGGAAGACTCA+AGG 0.576123 7_1:+58888909 Msa1026710:CDS
AATGTCAGCTTCATGAGTGT+TGG 0.576599 7_1:+58891413 Msa1026710:CDS
TGTCGTTGGGGCTTTGAAAG+GGG 0.577535 7_1:+58890358 Msa1026710:CDS
AGCAAGTGTCTTCCCAACTA+GGG 0.578467 7_1:-58889697 None:intergenic
GCGGCAACAGTGTTAGCGGT+GGG 0.581834 7_1:-58889012 None:intergenic
CAACTGGTAGCAGGAGGAAG+CGG 0.583181 7_1:+58890948 Msa1026710:CDS
CCAGGTATGATTGGAAAGGT+GGG 0.583244 7_1:+58891365 Msa1026710:CDS
GTGGAGGGTCGTGTGAAGGA+TGG 0.585025 7_1:+58891257 Msa1026710:CDS
GGACGGTGGGTTTAGAGTCG+AGG 0.586128 7_1:-58888723 None:intergenic
AGATGGTGAAGGGAGACGGA+GGG 0.591266 7_1:-58888599 None:intergenic
AGCACCTCTGAGGAAACCAT+TGG 0.591640 7_1:-58890407 None:intergenic
GACTTCACTGCTAAACAAAG+AGG 0.591938 7_1:+58891104 Msa1026710:CDS
TGGACTTGGATGAATTCAAG+TGG 0.592769 7_1:-58891176 None:intergenic
TCTTCGTGCTATGATAACAA+AGG 0.593071 7_1:+58891034 Msa1026710:CDS
GACGGTGGGTTTAGAGTCGA+GGG 0.598017 7_1:-58888722 None:intergenic
GATCCAACCTTTGTAAGATG+GGG 0.598278 7_1:-58891284 None:intergenic
TCAGCTTCATGAGTGTTGGA+AGG 0.600265 7_1:+58891417 Msa1026710:CDS
AAGAGGAGACGAAGACGACG+AGG 0.601153 7_1:-58888699 None:intergenic
AGTGACTTACGCTTCCGCTA+GGG 0.601349 7_1:+58890986 Msa1026710:CDS
GAGCGCGATCCCGTGTTCAG+CGG 0.601676 7_1:-58889034 None:intergenic
GATCGCGCTCTTAGCTGGCA+TGG 0.602254 7_1:+58889047 Msa1026710:CDS
GTTGTTGGTAGAGCTGGTGT+TGG 0.603479 7_1:+58888931 Msa1026710:CDS
CACGCAAAGAATCTTTGCAA+AGG 0.603720 7_1:+58891489 Msa1026710:CDS
ATTGTTAATGTTGCTCGTGG+TGG 0.608712 7_1:+58889963 Msa1026710:CDS
GGCGGCAACAGTGTTAGCGG+TGG 0.609033 7_1:-58889013 None:intergenic
TCATCTTGGTGCCAGTACCA+TGG 0.610967 7_1:+58890205 Msa1026710:CDS
GCAACCATGTTCGGTAGCGG+CGG 0.611449 7_1:-58888974 None:intergenic
TGCACCAATGGTTTCCTCAG+AGG 0.611627 7_1:+58890403 Msa1026710:CDS
ATGGTACTGGCACCAAGATG+AGG 0.614100 7_1:-58890203 None:intergenic
AACAACCTTGAGTCTTCCAC+CGG 0.614270 7_1:-58888914 None:intergenic
GTCCTCGTCGCTGAAAAGCT+CGG 0.619802 7_1:+58888742 Msa1026710:CDS
AAGCGAGTAGGTGAGTTTAG+GGG 0.620960 7_1:+58891656 Msa1026710:three_prime_UTR
TTGGGAAGTAGCGTTAGCGG+CGG 0.621158 7_1:-58888575 None:intergenic
AACTAAGTTCACGAAAACAC+TGG 0.623332 7_1:-58891075 None:intergenic
AACGATGGTACATCAAAACC+GGG 0.629832 7_1:-58891629 None:intergenic
AGGTTGCTAGGCGTGCTAAG+GGG 0.630349 7_1:+58889748 Msa1026710:CDS
TCAACCAGGTATGATTGGAA+AGG 0.630443 7_1:+58891361 Msa1026710:CDS
GTTGATCTTGCTGAGAAACT+GGG 0.632655 7_1:+58890912 Msa1026710:CDS
AAATGAGTGAGTGAGTGAGT+GGG 0.634099 7_1:-58888520 None:intergenic
CCATCGTTGAACAAGCGAGT+AGG 0.640090 7_1:+58891644 Msa1026710:three_prime_UTR
TTGATAACAGTCACAAGACA+GGG 0.642046 7_1:-58888437 None:intergenic
AGAATTGTTAATGTTGCTCG+TGG 0.642633 7_1:+58889960 Msa1026710:CDS
AGAGGAGACGAAGACGACGA+GGG 0.647210 7_1:-58888698 None:intergenic
CGAGTAGGTGAGTTTAGGGG+GGG 0.648782 7_1:+58891659 Msa1026710:three_prime_UTR
GAAATGAGTGAGTGAGTGAG+TGG 0.651534 7_1:-58888521 None:intergenic
ACTTCACTGCTAAACAAAGA+GGG 0.657467 7_1:+58891105 Msa1026710:CDS
ACCCACCAAAGACAGCAAGT+TGG 0.658654 7_1:+58890154 Msa1026710:CDS
GAAGTGTTTGAATCTTCCGG+TGG 0.658805 7_1:+58888898 Msa1026710:CDS
ATCCAACCTTTGTAAGATGG+GGG 0.663549 7_1:-58891283 None:intergenic
TAGTGCCATATCAGATTCAG+GGG 0.665071 7_1:+58891226 Msa1026710:CDS
ACACCTCTCAAACATAAACA+TGG 0.665632 7_1:+58888549 Msa1026710:exon
GACGAGTGTCAAGATCATCA+GGG 0.667404 7_1:-58891010 None:intergenic
AAGATCATCAGGGGCCCTAG+CGG 0.668439 7_1:-58891000 None:intergenic
AAGAGGGCTAAGAATTACTG+AGG 0.668513 7_1:+58891121 Msa1026710:CDS
TGCAGGCAAGTAGATCAACC+AGG 0.669453 7_1:+58891347 Msa1026710:CDS
CTCCTACAATCTCACTCCTG+AGG 0.670177 7_1:+58888810 Msa1026710:CDS
CAAAGAGATGAAATCAGCGG+TGG 0.673605 7_1:-58889865 None:intergenic
AGATTCAGGGGAGGTCACGG+TGG 0.674117 7_1:+58891238 Msa1026710:CDS
GCGAGTAGGTGAGTTTAGGG+GGG 0.674357 7_1:+58891658 Msa1026710:three_prime_UTR
GCTGTCCAACTGGTAGCAGG+AGG 0.676150 7_1:+58890942 Msa1026710:CDS
AAGACGACGAGGGAACGGCG+GGG 0.677271 7_1:-58888688 None:intergenic
GATGCTCTCATCGTTCGCAG+TGG 0.681979 7_1:+58888859 Msa1026710:CDS
ACGAGTGTCAAGATCATCAG+GGG 0.682389 7_1:-58891009 None:intergenic
CCTACTCGCTTGTTCAACGA+TGG 0.683942 7_1:-58891644 None:intergenic
TGCCATATCAGATTCAGGGG+AGG 0.684990 7_1:+58891229 Msa1026710:CDS
AATAGCAGAAGCTGTCGTTG+GGG 0.700433 7_1:+58890346 Msa1026710:CDS
GTGCAAAGAGATGAAATCAG+CGG 0.712158 7_1:-58889868 None:intergenic
ATCTTGCTGAGAAACTGGGT+AGG 0.734226 7_1:+58890916 Msa1026710:CDS
TGGTGTTGGTATTGATAACG+TGG 0.740226 7_1:+58888945 Msa1026710:CDS
TCGTGGTGGAGTCATTGACG+AGG 0.747608 7_1:+58889977 Msa1026710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAATATAACAAACA+AGG - chr7_1:58889150-58889169 None:intergenic 10.0%
!!! TATTTTTATCATGAAATAAA+AGG - chr7_1:58890456-58890475 None:intergenic 10.0%
!!! TTTTTTAGTGTTAGTTATTT+GGG + chr7_1:58889192-58889211 Msa1026710:intron 15.0%
!! TAATTTAAGTAAACTAAAAG+TGG - chr7_1:58890059-58890078 None:intergenic 15.0%
!!! TTTACTATTTAGAATGATTT+TGG - chr7_1:58890540-58890559 None:intergenic 15.0%
!!! TTTCTGTTGTATTTTATTTT+TGG + chr7_1:58891581-58891600 Msa1026710:three_prime_UTR 15.0%
!!! TTGTATTTTATTTTTGGATT+GGG + chr7_1:58891587-58891606 Msa1026710:three_prime_UTR 15.0%
!!! TCATTTTTATTTGGAAATAA+AGG + chr7_1:58891750-58891769 Msa1026710:three_prime_UTR 15.0%
!!! CATTTTTATTTGGAAATAAA+GGG + chr7_1:58891751-58891770 Msa1026710:three_prime_UTR 15.0%
!!! GTTTTTTAGTGTTAGTTATT+TGG + chr7_1:58889191-58889210 Msa1026710:intron 20.0%
!! TTGAGATCTAATGATATATA+TGG + chr7_1:58889376-58889395 Msa1026710:intron 20.0%
!! TGAGATCTAATGATATATAT+GGG + chr7_1:58889377-58889396 Msa1026710:intron 20.0%
!! TTTGAGAAAATGACATTATT+CGG - chr7_1:58889552-58889571 None:intergenic 20.0%
!!! TCGTTTTCAATATATGAATA+TGG - chr7_1:58890583-58890602 None:intergenic 20.0%
!!! TCATATATTGAAAACGATTT+TGG + chr7_1:58890586-58890605 Msa1026710:intron 20.0%
!!! GTTGTATTTTATTTTTGGAT+TGG + chr7_1:58891586-58891605 Msa1026710:three_prime_UTR 20.0%
! AAAAACACAACAAAATCATC+AGG - chr7_1:58889177-58889196 None:intergenic 25.0%
!! TGGTAAAATTTTCTGTGTAA+AGG + chr7_1:58889294-58889313 Msa1026710:intron 25.0%
!! TAAAATTTTCTGTGTAAAGG+AGG + chr7_1:58889297-58889316 Msa1026710:intron 25.0%
! GAGATCTAATGATATATATG+GGG + chr7_1:58889378-58889397 Msa1026710:intron 25.0%
! AGATCTAATGATATATATGG+GGG + chr7_1:58889379-58889398 Msa1026710:intron 25.0%
!! GCATAAGTTATTAGTTGATA+TGG + chr7_1:58889606-58889625 Msa1026710:intron 25.0%
!!! ATTGAATTAGTGTTGATACA+TGG + chr7_1:58889632-58889651 Msa1026710:intron 25.0%
! ATATTGCTTGGATATAGATA+AGG - chr7_1:58890512-58890531 None:intergenic 25.0%
! TTATCTATATCCAAGCAATA+TGG + chr7_1:58890511-58890530 Msa1026710:intron 25.0%
!!! AAAACGATTTTGGAACAAAA+TGG + chr7_1:58890596-58890615 Msa1026710:intron 25.0%
!!! AGTATTTAATTTGAACCAGT+TGG - chr7_1:58890657-58890676 None:intergenic 25.0%
! ATTAAATACTACTCAAGTGA+AGG + chr7_1:58890667-58890686 Msa1026710:intron 25.0%
! GATTTGAGAAATCTAATACA+TGG + chr7_1:58890699-58890718 Msa1026710:intron 25.0%
!!! CTTAATGAGTTTTTTTTGCT+CGG + chr7_1:58890724-58890743 Msa1026710:intron 25.0%
! TCCTAATACAAAATGATTCA+TGG + chr7_1:58890789-58890808 Msa1026710:intron 25.0%
!! TCCATGAATCATTTTGTATT+AGG - chr7_1:58890793-58890812 None:intergenic 25.0%
! ATACAAAATGATTCATGGAT+TGG + chr7_1:58890794-58890813 Msa1026710:intron 25.0%
! ACATTTAATCTTACAACTTG+AGG - chr7_1:58891550-58891569 None:intergenic 25.0%
! GGAAAAGAATAATGTAACTT+TGG + chr7_1:58891686-58891705 Msa1026710:three_prime_UTR 25.0%
!!! CATGCTTGTTCATTTTTATT+TGG + chr7_1:58891741-58891760 Msa1026710:three_prime_UTR 25.0%
! AACTCATCAAGTGAAGTTTT+GGG - chr7_1:58888480-58888499 None:intergenic 30.0%
TTGTTAACTACTAGTTGACT+AGG + chr7_1:58889263-58889282 Msa1026710:intron 30.0%
! ATAGTTTGTGTCTTTGTTTC+AGG + chr7_1:58890103-58890122 Msa1026710:intron 30.0%
AAGCTATAACTCATAGTCAT+AGG - chr7_1:58890259-58890278 None:intergenic 30.0%
TTTCAAAGGTTATTAGACAC+TGG - chr7_1:58890298-58890317 None:intergenic 30.0%
!! ATTTTGGAAACCATATTGCT+TGG - chr7_1:58890524-58890543 None:intergenic 30.0%
!! ATTGGAGTTGGTGATAAATT+TGG + chr7_1:58890812-58890831 Msa1026710:intron 30.0%
!!! TTTTGAAGTTGATGTGAGTT+TGG + chr7_1:58891307-58891326 Msa1026710:CDS 30.0%
AAAGAATCTTTGCAAAGGAT+TGG + chr7_1:58891494-58891513 Msa1026710:CDS 30.0%
AAAACAAATTCTTCAACAGC+AGG - chr7_1:58891527-58891546 None:intergenic 30.0%
TGGAATGAATTGTGATTTAC+TGG + chr7_1:58891706-58891725 Msa1026710:three_prime_UTR 30.0%
! TTGATAACAGTCACAAGACA+GGG - chr7_1:58888440-58888459 None:intergenic 35.0%
! CAACTCATCAAGTGAAGTTT+TGG - chr7_1:58888481-58888500 None:intergenic 35.0%
ACACCTCTCAAACATAAACA+TGG + chr7_1:58888549-58888568 Msa1026710:exon 35.0%
CACACACAAATTGGTATATG+AGG - chr7_1:58889334-58889353 None:intergenic 35.0%
CTCATATACCAATTTGTGTG+TGG + chr7_1:58889332-58889351 Msa1026710:intron 35.0%
AGAATTCACCACACACAAAT+TGG - chr7_1:58889343-58889362 None:intergenic 35.0%
TTCTTCCGTGTAATCTGTAA+TGG + chr7_1:58889422-58889441 Msa1026710:intron 35.0%
TCTTCCGTGTAATCTGTAAT+GGG + chr7_1:58889423-58889442 Msa1026710:intron 35.0%
AACACCCATTACAGATTACA+CGG - chr7_1:58889430-58889449 None:intergenic 35.0%
!! TGTAATGGGTGTTAATGTTG+TGG + chr7_1:58889437-58889456 Msa1026710:intron 35.0%
! ACATTGTCACTTCTGATCAA+AGG + chr7_1:58889480-58889499 Msa1026710:intron 35.0%
TGTTGATACATGGTCAATAC+AGG + chr7_1:58889642-58889661 Msa1026710:intron 35.0%
GTTGATACATGGTCAATACA+GGG + chr7_1:58889643-58889662 Msa1026710:intron 35.0%
CTCATCATTGAGCATCTTAT+TGG - chr7_1:58889913-58889932 None:intergenic 35.0%
! ACTTTTGCCAAGATGAAGAA+AGG + chr7_1:58889933-58889952 Msa1026710:CDS 35.0%
TCTAACTCCTTTCTTCATCT+TGG - chr7_1:58889943-58889962 None:intergenic 35.0%
AGAATTGTTAATGTTGCTCG+TGG + chr7_1:58889960-58889979 Msa1026710:CDS 35.0%
ATAGTCATAGGCAATTGCTT+AGG - chr7_1:58890247-58890266 None:intergenic 35.0%
! AACCTTTGAAAATGATGACC+AGG + chr7_1:58890307-58890326 Msa1026710:intron 35.0%
! TTCCTGGTCATCATTTTCAA+AGG - chr7_1:58890312-58890331 None:intergenic 35.0%
TTTGAAAATGATGACCAGGA+AGG + chr7_1:58890311-58890330 Msa1026710:intron 35.0%
AGTAACAATATCAAGAGGCA+AGG - chr7_1:58890480-58890499 None:intergenic 35.0%
GAAGCAGTAACAATATCAAG+AGG - chr7_1:58890485-58890504 None:intergenic 35.0%
GATAAAGCCAGCTTCAAAAT+TGG - chr7_1:58890760-58890779 None:intergenic 35.0%
!! AATGATTCATGGATTGGAGT+TGG + chr7_1:58890800-58890819 Msa1026710:intron 35.0%
TTCTCAGCAAGATCAACAAA+TGG - chr7_1:58890909-58890928 None:intergenic 35.0%
TCTTCGTGCTATGATAACAA+AGG + chr7_1:58891034-58891053 Msa1026710:CDS 35.0%
CTTCGTGCTATGATAACAAA+GGG + chr7_1:58891035-58891054 Msa1026710:CDS 35.0%
TTCACGAAAACACTGGATAT+GGG - chr7_1:58891071-58891090 None:intergenic 35.0%
AACTAAGTTCACGAAAACAC+TGG - chr7_1:58891078-58891097 None:intergenic 35.0%
ACTTCACTGCTAAACAAAGA+GGG + chr7_1:58891105-58891124 Msa1026710:CDS 35.0%
! ATGAATTCAAGTGGATTCTC+AGG - chr7_1:58891170-58891189 None:intergenic 35.0%
AGATCCAACCTTTGTAAGAT+GGG - chr7_1:58891288-58891307 None:intergenic 35.0%
AAGATCCAACCTTTGTAAGA+TGG - chr7_1:58891289-58891308 None:intergenic 35.0%
AAGGTAGCATTATACTTTGC+AGG + chr7_1:58891330-58891349 Msa1026710:CDS 35.0%
TAAAGGGAATAACAGTGTGT+TGG + chr7_1:58891767-58891786 Msa1026710:three_prime_UTR 35.0%
! CTTGATAACAGTCACAAGAC+AGG - chr7_1:58888441-58888460 None:intergenic 40.0%
AAATGAGTGAGTGAGTGAGT+GGG - chr7_1:58888523-58888542 None:intergenic 40.0%
AAACACTTCACGTGAGACTT+TGG - chr7_1:58888887-58888906 None:intergenic 40.0%
! CGTGAAGTGTTTGAATCTTC+CGG + chr7_1:58888895-58888914 Msa1026710:CDS 40.0%
!! TGGTGTTGGTATTGATAACG+TGG + chr7_1:58888945-58888964 Msa1026710:CDS 40.0%
!! TGGTATTGATAACGTGGATC+TGG + chr7_1:58888951-58888970 Msa1026710:CDS 40.0%
AACAACCAAGCAACCATGTT+CGG - chr7_1:58888986-58889005 None:intergenic 40.0%
TAGTTGACTAGGTGACGTAA+TGG + chr7_1:58889274-58889293 Msa1026710:intron 40.0%
ACATGGTCAATACAGGGAAA+TGG + chr7_1:58889649-58889668 Msa1026710:intron 40.0%
CATGGTCAATACAGGGAAAT+GGG + chr7_1:58889650-58889669 Msa1026710:intron 40.0%
TGGGAGAGAAGTAAGTATGT+TGG + chr7_1:58889669-58889688 Msa1026710:CDS 40.0%
TATGTTGGAGTTTCCCTAGT+TGG + chr7_1:58889684-58889703 Msa1026710:CDS 40.0%
ATGTTGGAGTTTCCCTAGTT+GGG + chr7_1:58889685-58889704 Msa1026710:CDS 40.0%
!! ACACTTGCTGTAATGGGATT+TGG + chr7_1:58889711-58889730 Msa1026710:CDS 40.0%
!! CACTTGCTGTAATGGGATTT+GGG + chr7_1:58889712-58889731 Msa1026710:CDS 40.0%
! TGTTGAGCTTGTGAGTTTTG+AGG + chr7_1:58889833-58889852 Msa1026710:CDS 40.0%
GTGCAAAGAGATGAAATCAG+CGG - chr7_1:58889871-58889890 None:intergenic 40.0%
! TTGAGCATCTTATTGGTAGC+AGG - chr7_1:58889906-58889925 None:intergenic 40.0%
ATTGTTAATGTTGCTCGTGG+TGG + chr7_1:58889963-58889982 Msa1026710:CDS 40.0%
!! CTTGTTAGAGCATTGGATTC+TGG + chr7_1:58890005-58890024 Msa1026710:CDS 40.0%
! GTTTGTGTCTTTGTTTCAGG+CGG + chr7_1:58890106-58890125 Msa1026710:intron 40.0%
!! CATAACCAACTTGCTGTCTT+TGG - chr7_1:58890162-58890181 None:intergenic 40.0%
ATTAGACACTGGTGGCAAAA+GGG - chr7_1:58890287-58890306 None:intergenic 40.0%
TATTAGACACTGGTGGCAAA+AGG - chr7_1:58890288-58890307 None:intergenic 40.0%
CAAAGGTTATTAGACACTGG+TGG - chr7_1:58890295-58890314 None:intergenic 40.0%
TTTCAATAGCTACACCTTCC+TGG - chr7_1:58890328-58890347 None:intergenic 40.0%
AAATAGCAGAAGCTGTCGTT+GGG + chr7_1:58890345-58890364 Msa1026710:CDS 40.0%
!!! TATCCCTCCAATTTTGAAGC+TGG + chr7_1:58890750-58890769 Msa1026710:intron 40.0%
AAGCCAGCTTCAAAATTGGA+GGG - chr7_1:58890756-58890775 None:intergenic 40.0%
AAAGCCAGCTTCAAAATTGG+AGG - chr7_1:58890757-58890776 None:intergenic 40.0%
! TTGGTGATAAATTTGGCGAC+TGG + chr7_1:58890819-58890838 Msa1026710:intron 40.0%
! TTCATTCCTTTGTGACTTGC+AGG + chr7_1:58890866-58890885 Msa1026710:intron 40.0%
TTAACACCTGCAAGTCACAA+AGG - chr7_1:58890875-58890894 None:intergenic 40.0%
TGTTGATCTTGCTGAGAAAC+TGG + chr7_1:58890911-58890930 Msa1026710:CDS 40.0%
GTTGATCTTGCTGAGAAACT+GGG + chr7_1:58890912-58890931 Msa1026710:CDS 40.0%
GTTCACGAAAACACTGGATA+TGG - chr7_1:58891072-58891091 None:intergenic 40.0%
GACTTCACTGCTAAACAAAG+AGG + chr7_1:58891104-58891123 Msa1026710:CDS 40.0%
AAGAGGGCTAAGAATTACTG+AGG + chr7_1:58891121-58891140 Msa1026710:CDS 40.0%
GAGGAGAGAGTTATTCTTGA+TGG + chr7_1:58891140-58891159 Msa1026710:CDS 40.0%
TGGACTTGGATGAATTCAAG+TGG - chr7_1:58891179-58891198 None:intergenic 40.0%
CTAGTGCCATATCAGATTCA+GGG + chr7_1:58891225-58891244 Msa1026710:CDS 40.0%
TAGTGCCATATCAGATTCAG+GGG + chr7_1:58891226-58891245 Msa1026710:CDS 40.0%
ATCCAACCTTTGTAAGATGG+GGG - chr7_1:58891286-58891305 None:intergenic 40.0%
GATCCAACCTTTGTAAGATG+GGG - chr7_1:58891287-58891306 None:intergenic 40.0%
!! GAAGTTGATGTGAGTTTGGA+AGG + chr7_1:58891311-58891330 Msa1026710:CDS 40.0%
GTAGATCAACCAGGTATGAT+TGG + chr7_1:58891356-58891375 Msa1026710:CDS 40.0%
TCAACCAGGTATGATTGGAA+AGG + chr7_1:58891361-58891380 Msa1026710:CDS 40.0%
AATGTCAGCTTCATGAGTGT+TGG + chr7_1:58891413-58891432 Msa1026710:CDS 40.0%
CTTTGCAAAGATTCTTTGCG+TGG - chr7_1:58891491-58891510 None:intergenic 40.0%
CACGCAAAGAATCTTTGCAA+AGG + chr7_1:58891489-58891508 Msa1026710:CDS 40.0%
!! TTTTGGATTGGGCATATGTC+TGG + chr7_1:58891598-58891617 Msa1026710:three_prime_UTR 40.0%
AACGATGGTACATCAAAACC+GGG - chr7_1:58891632-58891651 None:intergenic 40.0%
CAACGATGGTACATCAAAAC+CGG - chr7_1:58891633-58891652 None:intergenic 40.0%
GAAATGAGTGAGTGAGTGAG+TGG - chr7_1:58888524-58888543 None:intergenic 45.0%
CGGCCATGTTTATGTTTGAG+AGG - chr7_1:58888555-58888574 None:intergenic 45.0%
GAGAAAGGGAAGATGGTGAA+GGG - chr7_1:58888612-58888631 None:intergenic 45.0%
AGAGAAAGGGAAGATGGTGA+AGG - chr7_1:58888613-58888632 None:intergenic 45.0%
GAGTTTGGAGGAGAGAGAAA+GGG - chr7_1:58888626-58888645 None:intergenic 45.0%
AGCATCACAGAGAGAGATCT+TGG - chr7_1:58888845-58888864 None:intergenic 45.0%
! GAAGTGTTTGAATCTTCCGG+TGG + chr7_1:58888898-58888917 Msa1026710:CDS 45.0%
AACAACCTTGAGTCTTCCAC+CGG - chr7_1:58888917-58888936 None:intergenic 45.0%
CATGGCTAGAAATGTTGCTC+AGG + chr7_1:58889065-58889084 Msa1026710:CDS 45.0%
GCTGATGCTTCTATCAAAGC+TGG + chr7_1:58889087-58889106 Msa1026710:CDS 45.0%
AGCAAGTGTCTTCCCAACTA+GGG - chr7_1:58889700-58889719 None:intergenic 45.0%
!! TGGGAAGACACTTGCTGTAA+TGG + chr7_1:58889704-58889723 Msa1026710:CDS 45.0%
!! GGGAAGACACTTGCTGTAAT+GGG + chr7_1:58889705-58889724 Msa1026710:CDS 45.0%
! TGCTGTAATGGGATTTGGGA+AGG + chr7_1:58889716-58889735 Msa1026710:CDS 45.0%
! GTAATGGGATTTGGGAAGGT+TGG + chr7_1:58889720-58889739 Msa1026710:CDS 45.0%
ATTTGGGAAGGTTGGAACTG+AGG + chr7_1:58889728-58889747 Msa1026710:CDS 45.0%
!!! TGAGCTTGTGAGTTTTGAGG+AGG + chr7_1:58889836-58889855 Msa1026710:CDS 45.0%
CAAAGAGATGAAATCAGCGG+TGG - chr7_1:58889868-58889887 None:intergenic 45.0%
! TTATTGGTAGCAGGCGTAAG+AGG - chr7_1:58889897-58889916 None:intergenic 45.0%
! GGATGCACTTGTTAGAGCAT+TGG + chr7_1:58889998-58890017 Msa1026710:CDS 45.0%
!! GGATTCTGGAATTGTAGCTC+AGG + chr7_1:58890019-58890038 Msa1026710:CDS 45.0%
!! ACCAACTTGCTGTCTTTGGT+GGG - chr7_1:58890158-58890177 None:intergenic 45.0%
!! AACCAACTTGCTGTCTTTGG+TGG - chr7_1:58890159-58890178 None:intergenic 45.0%
GTTACTGCAACACCTCATCT+TGG + chr7_1:58890191-58890210 Msa1026710:CDS 45.0%
GTAACTTACCTGAGCTTCCA+TGG - chr7_1:58890225-58890244 None:intergenic 45.0%
TTAGACACTGGTGGCAAAAG+GGG - chr7_1:58890286-58890305 None:intergenic 45.0%
GAAATAGCAGAAGCTGTCGT+TGG + chr7_1:58890344-58890363 Msa1026710:CDS 45.0%
AATAGCAGAAGCTGTCGTTG+GGG + chr7_1:58890346-58890365 Msa1026710:CDS 45.0%
TACTGCAGTCAATGCACCAA+TGG + chr7_1:58890391-58890410 Msa1026710:CDS 45.0%
! TTTTGTTCCTAGCACCTCTG+AGG - chr7_1:58890420-58890439 None:intergenic 45.0%
TCAACTGCTATGTGTCCAAC+TGG + chr7_1:58890639-58890658 Msa1026710:intron 45.0%
ATCTTGCTGAGAAACTGGGT+AGG + chr7_1:58890916-58890935 Msa1026710:CDS 45.0%
ACGAGTGTCAAGATCATCAG+GGG - chr7_1:58891012-58891031 None:intergenic 45.0%
GACGAGTGTCAAGATCATCA+GGG - chr7_1:58891013-58891032 None:intergenic 45.0%
AGACGAGTGTCAAGATCATC+AGG - chr7_1:58891014-58891033 None:intergenic 45.0%
GAGATTCCACGTTAGCAATC+TGG - chr7_1:58891199-58891218 None:intergenic 45.0%
GCTAGTGCCATATCAGATTC+AGG + chr7_1:58891224-58891243 Msa1026710:CDS 45.0%
ACCAGGTATGATTGGAAAGG+TGG + chr7_1:58891364-58891383 Msa1026710:CDS 45.0%
CCAGGTATGATTGGAAAGGT+GGG + chr7_1:58891365-58891384 Msa1026710:CDS 45.0%
!! TCAGCTTCATGAGTGTTGGA+AGG + chr7_1:58891417-58891436 Msa1026710:CDS 45.0%
ACAAGCGAGTAGGTGAGTTT+AGG + chr7_1:58891654-58891673 Msa1026710:three_prime_UTR 45.0%
CAAGCGAGTAGGTGAGTTTA+GGG + chr7_1:58891655-58891674 Msa1026710:three_prime_UTR 45.0%
AAGCGAGTAGGTGAGTTTAG+GGG + chr7_1:58891656-58891675 Msa1026710:three_prime_UTR 45.0%
!! TACTTAAATTAATAATTAAT+TGG + chr7_1:58890068-58890087 Msa1026710:intron 5.0%
!! ACTTAAATTAATAATTAATT+GGG + chr7_1:58890069-58890088 Msa1026710:intron 5.0%
GGTTTGGGAAGTAGCGTTAG+CGG - chr7_1:58888581-58888600 None:intergenic 50.0%
GAGGAGAGAGAAAGGGAAGA+TGG - chr7_1:58888619-58888638 None:intergenic 50.0%
GGAGTTTGGAGGAGAGAGAA+AGG - chr7_1:58888627-58888646 None:intergenic 50.0%
CTCCTACAATCTCACTCCTG+AGG + chr7_1:58888810-58888829 Msa1026710:CDS 50.0%
CTCCTCAGGAGTGAGATTGT+AGG - chr7_1:58888815-58888834 None:intergenic 50.0%
! ATCTTGGTGCAAAGCTCCTC+AGG - chr7_1:58888829-58888848 None:intergenic 50.0%
ATCTTCCGGTGGAAGACTCA+AGG + chr7_1:58888909-58888928 Msa1026710:CDS 50.0%
GGTGGAAGACTCAAGGTTGT+TGG + chr7_1:58888916-58888935 Msa1026710:CDS 50.0%
! CTCAAGGTTGTTGGTAGAGC+TGG + chr7_1:58888925-58888944 Msa1026710:CDS 50.0%
! GTTGTTGGTAGAGCTGGTGT+TGG + chr7_1:58888931-58888950 Msa1026710:CDS 50.0%
CAAGCAACCATGTTCGGTAG+CGG - chr7_1:58888980-58888999 None:intergenic 50.0%
TCAGTGTCAGACACTCACAC+AGG - chr7_1:58889511-58889530 None:intergenic 50.0%
CAGCAAGTGTCTTCCCAACT+AGG - chr7_1:58889701-58889720 None:intergenic 50.0%
AGGTTGGAACTGAGGTTGCT+AGG + chr7_1:58889736-58889755 Msa1026710:CDS 50.0%
! TGCTAAGGGGCTTGGTATGA+AGG + chr7_1:58889761-58889780 Msa1026710:CDS 50.0%
ATAGCATGAGCACGATCAGC+AGG - chr7_1:58889810-58889829 None:intergenic 50.0%
GCTGATCGTGCTCATGCTAT+TGG + chr7_1:58889810-58889829 Msa1026710:CDS 50.0%
! GGCGGCTCTTGATGTTTTCA+CGG + chr7_1:58890124-58890143 Msa1026710:intron 50.0%
! GGCTCTTGATGTTTTCACGG+TGG + chr7_1:58890127-58890146 Msa1026710:CDS 50.0%
!! AACTTGCTGTCTTTGGTGGG+TGG - chr7_1:58890155-58890174 None:intergenic 50.0%
ACCCACCAAAGACAGCAAGT+TGG + chr7_1:58890154-58890173 Msa1026710:CDS 50.0%
!! ATGGTACTGGCACCAAGATG+AGG - chr7_1:58890206-58890225 None:intergenic 50.0%
!! TCATCTTGGTGCCAGTACCA+TGG + chr7_1:58890205-58890224 Msa1026710:CDS 50.0%
TACCTGAGCTTCCATGGTAC+TGG - chr7_1:58890219-58890238 None:intergenic 50.0%
!! CTGTCGTTGGGGCTTTGAAA+GGG + chr7_1:58890357-58890376 Msa1026710:CDS 50.0%
!! TGTCGTTGGGGCTTTGAAAG+GGG + chr7_1:58890358-58890377 Msa1026710:CDS 50.0%
TGCACCAATGGTTTCCTCAG+AGG + chr7_1:58890403-58890422 Msa1026710:CDS 50.0%
! AGCACCTCTGAGGAAACCAT+TGG - chr7_1:58890410-58890429 None:intergenic 50.0%
!! ATGGTTTCCTCAGAGGTGCT+AGG + chr7_1:58890410-58890429 Msa1026710:intron 50.0%
TGCTGAGAAACTGGGTAGGT+TGG + chr7_1:58890920-58890939 Msa1026710:CDS 50.0%
AAGTGACTTACGCTTCCGCT+AGG + chr7_1:58890985-58891004 Msa1026710:CDS 50.0%
AGTGACTTACGCTTCCGCTA+GGG + chr7_1:58890986-58891005 Msa1026710:CDS 50.0%
CCACGTTAGCAATCTGGACT+TGG - chr7_1:58891193-58891212 None:intergenic 50.0%
CCAAGTCCAGATTGCTAACG+TGG + chr7_1:58891190-58891209 Msa1026710:CDS 50.0%
TGCCATATCAGATTCAGGGG+AGG + chr7_1:58891229-58891248 Msa1026710:CDS 50.0%
GACCTCCCCTGAATCTGATA+TGG - chr7_1:58891234-58891253 None:intergenic 50.0%
ATCAGATTCAGGGGAGGTCA+CGG + chr7_1:58891235-58891254 Msa1026710:CDS 50.0%
TGGTGTCCCCCATCTTACAA+AGG + chr7_1:58891277-58891296 Msa1026710:CDS 50.0%
GTCCCCCATCTTACAAAGGT+TGG + chr7_1:58891281-58891300 Msa1026710:CDS 50.0%
TGCAGGCAAGTAGATCAACC+AGG + chr7_1:58891347-58891366 Msa1026710:CDS 50.0%
CCCACCTTTCCAATCATACC+TGG - chr7_1:58891368-58891387 None:intergenic 50.0%
!! TGGAAAGGTGGGAAGCATCT+TGG + chr7_1:58891376-58891395 Msa1026710:CDS 50.0%
!! GGAAAGGTGGGAAGCATCTT+GGG + chr7_1:58891377-58891396 Msa1026710:CDS 50.0%
AAGCAGGCTGTGATGGCAAT+TGG + chr7_1:58891452-58891471 Msa1026710:CDS 50.0%
ATATGTCTGGCTGATGTGCC+CGG + chr7_1:58891611-58891630 Msa1026710:three_prime_UTR 50.0%
CCTACTCGCTTGTTCAACGA+TGG - chr7_1:58891647-58891666 None:intergenic 50.0%
CCATCGTTGAACAAGCGAGT+AGG + chr7_1:58891644-58891663 Msa1026710:three_prime_UTR 50.0%
AGCGAGTAGGTGAGTTTAGG+GGG + chr7_1:58891657-58891676 Msa1026710:three_prime_UTR 50.0%
TTGGGAAGTAGCGTTAGCGG+CGG - chr7_1:58888578-58888597 None:intergenic 55.0%
TGAAGGGAGACGGAGGGTTT+GGG - chr7_1:58888596-58888615 None:intergenic 55.0%
AGATGGTGAAGGGAGACGGA+GGG - chr7_1:58888602-58888621 None:intergenic 55.0%
AAGATGGTGAAGGGAGACGG+AGG - chr7_1:58888603-58888622 None:intergenic 55.0%
GGGAAGATGGTGAAGGGAGA+CGG - chr7_1:58888606-58888625 None:intergenic 55.0%
AGACGAAGACGACGAGGGAA+CGG - chr7_1:58888696-58888715 None:intergenic 55.0%
AGAGGAGACGAAGACGACGA+GGG - chr7_1:58888701-58888720 None:intergenic 55.0%
AAGAGGAGACGAAGACGACG+AGG - chr7_1:58888702-58888721 None:intergenic 55.0%
! GGGTTTAGAGTCGAGGGAAG+AGG - chr7_1:58888719-58888738 None:intergenic 55.0%
! GACGGTGGGTTTAGAGTCGA+GGG - chr7_1:58888725-58888744 None:intergenic 55.0%
! TTTTCAGCGACGAGGACGGT+GGG - chr7_1:58888739-58888758 None:intergenic 55.0%
! GAGCTTTTCAGCGACGAGGA+CGG - chr7_1:58888743-58888762 None:intergenic 55.0%
GTCCTCGTCGCTGAAAAGCT+CGG + chr7_1:58888742-58888761 Msa1026710:CDS 55.0%
GATGCTCTCATCGTTCGCAG+TGG + chr7_1:58888859-58888878 Msa1026710:CDS 55.0%
CGCTACCGAACATGGTTGCT+TGG + chr7_1:58888978-58888997 Msa1026710:CDS 55.0%
TGAGGTTGCTAGGCGTGCTA+AGG + chr7_1:58889746-58889765 Msa1026710:CDS 55.0%
GAGGTTGCTAGGCGTGCTAA+GGG + chr7_1:58889747-58889766 Msa1026710:CDS 55.0%
AGGTTGCTAGGCGTGCTAAG+GGG + chr7_1:58889748-58889767 Msa1026710:CDS 55.0%
! GCACGATCAGCAGGAGCATA+AGG - chr7_1:58889801-58889820 None:intergenic 55.0%
! TCGTGGTGGAGTCATTGACG+AGG + chr7_1:58889977-58889996 Msa1026710:CDS 55.0%
TGCCAGTACCATGGAAGCTC+AGG + chr7_1:58890214-58890233 Msa1026710:CDS 55.0%
!! GCTGTCGTTGGGGCTTTGAA+AGG + chr7_1:58890356-58890375 Msa1026710:CDS 55.0%
TTGGCTGTCCAACTGGTAGC+AGG + chr7_1:58890939-58890958 Msa1026710:CDS 55.0%
CAACTGGTAGCAGGAGGAAG+CGG + chr7_1:58890948-58890967 Msa1026710:CDS 55.0%
AAGATCATCAGGGGCCCTAG+CGG - chr7_1:58891003-58891022 None:intergenic 55.0%
AAGGATTGCTCCACGCAAGC+AGG + chr7_1:58891436-58891455 Msa1026710:CDS 55.0%
GCGAGTAGGTGAGTTTAGGG+GGG + chr7_1:58891658-58891677 Msa1026710:three_prime_UTR 55.0%
CGAGTAGGTGAGTTTAGGGG+GGG + chr7_1:58891659-58891678 Msa1026710:three_prime_UTR 55.0%
GTGAAGGGAGACGGAGGGTT+TGG - chr7_1:58888597-58888616 None:intergenic 60.0%
GGAGGAGAGAGGGAGTTTGG+AGG - chr7_1:58888638-58888657 None:intergenic 60.0%
! GGACGGTGGGTTTAGAGTCG+AGG - chr7_1:58888726-58888745 None:intergenic 60.0%
! CTTTTCAGCGACGAGGACGG+TGG - chr7_1:58888740-58888759 None:intergenic 60.0%
GCTGAAAAGCTCGGCGAAGC+TGG + chr7_1:58888751-58888770 Msa1026710:CDS 60.0%
! GCAACCATGTTCGGTAGCGG+CGG - chr7_1:58888977-58888996 None:intergenic 60.0%
GCGGCAACAGTGTTAGCGGT+GGG - chr7_1:58889015-58889034 None:intergenic 60.0%
AGCGGCGGCAACAGTGTTAG+CGG - chr7_1:58889019-58889038 None:intergenic 60.0%
ACTGTTGCCGCCGCTGAACA+CGG + chr7_1:58889024-58889043 Msa1026710:CDS 60.0%
GATCGCGCTCTTAGCTGGCA+TGG + chr7_1:58889047-58889066 Msa1026710:CDS 60.0%
! GGGTAGGTTGGCTGTCCAAC+TGG + chr7_1:58890932-58890951 Msa1026710:CDS 60.0%
GCTGTCCAACTGGTAGCAGG+AGG + chr7_1:58890942-58890961 Msa1026710:CDS 60.0%
CGCTTCCTCCTGCTACCAGT+TGG - chr7_1:58890950-58890969 None:intergenic 60.0%
AGATTCAGGGGAGGTCACGG+TGG + chr7_1:58891238-58891257 Msa1026710:CDS 60.0%
GTGGAGGGTCGTGTGAAGGA+TGG + chr7_1:58891257-58891276 Msa1026710:CDS 60.0%
TCCACGCAAGCAGGCTGTGA+TGG + chr7_1:58891445-58891464 Msa1026710:CDS 60.0%
GGTGAGTTTAGGGGGGGATG+AGG + chr7_1:58891665-58891684 Msa1026710:three_prime_UTR 60.0%
GGAAGTAGCGTTAGCGGCGG+CGG - chr7_1:58888575-58888594 None:intergenic 65.0%
GGCGGAGGAGAGAGGGAGTT+TGG - chr7_1:58888641-58888660 None:intergenic 65.0%
CGGAGAAGGCGGAGGAGAGA+GGG - chr7_1:58888648-58888667 None:intergenic 65.0%
ACGGAGAAGGCGGAGGAGAG+AGG - chr7_1:58888649-58888668 None:intergenic 65.0%
GAGAGAGACGGAGAAGGCGG+AGG - chr7_1:58888656-58888675 None:intergenic 65.0%
GCGGAGAGAGACGGAGAAGG+CGG - chr7_1:58888659-58888678 None:intergenic 65.0%
GTTGTGGGGGCGGAGAGAGA+CGG - chr7_1:58888668-58888687 None:intergenic 65.0%
AAGACGACGAGGGAACGGCG+GGG - chr7_1:58888691-58888710 None:intergenic 65.0%
GAAGACGACGAGGGAACGGC+GGG - chr7_1:58888692-58888711 None:intergenic 65.0%
CGAAGACGACGAGGGAACGG+CGG - chr7_1:58888693-58888712 None:intergenic 65.0%
! CGCCGAGCTTTTCAGCGACG+AGG - chr7_1:58888747-58888766 None:intergenic 65.0%
GGCGGCAACAGTGTTAGCGG+TGG - chr7_1:58889016-58889035 None:intergenic 65.0%
CTGTTGCCGCCGCTGAACAC+GGG + chr7_1:58889025-58889044 Msa1026710:CDS 65.0%
GAGCGCGATCCCGTGTTCAG+CGG - chr7_1:58889037-58889056 None:intergenic 65.0%
CACGGGATCGCGCTCTTAGC+TGG + chr7_1:58889042-58889061 Msa1026710:CDS 65.0%
GCTAGGCGTGCTAAGGGGCT+TGG + chr7_1:58889753-58889772 Msa1026710:CDS 65.0%
TTCAGGGGAGGTCACGGTGG+AGG + chr7_1:58891241-58891260 Msa1026710:CDS 65.0%
TCAGGGGAGGTCACGGTGGA+GGG + chr7_1:58891242-58891261 Msa1026710:CDS 65.0%
CACGGTGGAGGGTCGTGTGA+AGG + chr7_1:58891253-58891272 Msa1026710:CDS 65.0%
GCCATCACAGCCTGCTTGCG+TGG - chr7_1:58891449-58891468 None:intergenic 65.0%
GGGGCGGAGAGAGACGGAGA+AGG - chr7_1:58888662-58888681 None:intergenic 70.0%
AGGGAACGGCGGGGGTTGTG+GGG - chr7_1:58888682-58888701 None:intergenic 70.0%
GAGGGAACGGCGGGGGTTGT+GGG - chr7_1:58888683-58888702 None:intergenic 70.0%
AGACGACGAGGGAACGGCGG+GGG - chr7_1:58888690-58888709 None:intergenic 70.0%
CTGGCCGCCGCTACCGAACA+TGG + chr7_1:58888970-58888989 Msa1026710:CDS 70.0%
CGCGATCCCGTGTTCAGCGG+CGG - chr7_1:58889034-58889053 None:intergenic 70.0%
AACGGCGGGGGTTGTGGGGG+CGG - chr7_1:58888678-58888697 None:intergenic 75.0%
GGGAACGGCGGGGGTTGTGG+GGG - chr7_1:58888681-58888700 None:intergenic 75.0%
CGAGGGAACGGCGGGGGTTG+TGG - chr7_1:58888684-58888703 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 58888425 58891807 58888425 ID=Msa1026710;Name=Msa1026710
chr7_1 mRNA 58888425 58891807 58888425 ID=Msa1026710-mRNA-1;Parent=Msa1026710;Name=Msa1026710-mRNA-1;_AED=0.06;_eAED=0.06;_QI=143|1|1|1|1|1|5|248|598
chr7_1 exon 58888425 58889108 58888425 ID=Msa1026710-mRNA-1:exon:11772;Parent=Msa1026710-mRNA-1
chr7_1 exon 58889664 58890040 58889664 ID=Msa1026710-mRNA-1:exon:11773;Parent=Msa1026710-mRNA-1
chr7_1 exon 58890125 58890235 58890125 ID=Msa1026710-mRNA-1:exon:11774;Parent=Msa1026710-mRNA-1
chr7_1 exon 58890329 58890424 58890329 ID=Msa1026710-mRNA-1:exon:11775;Parent=Msa1026710-mRNA-1
chr7_1 exon 58890888 58891807 58890888 ID=Msa1026710-mRNA-1:exon:11776;Parent=Msa1026710-mRNA-1
chr7_1 five_prime_UTR 58888425 58888567 58888425 ID=Msa1026710-mRNA-1:five_prime_utr;Parent=Msa1026710-mRNA-1
chr7_1 CDS 58888568 58889108 58888568 ID=Msa1026710-mRNA-1:cds;Parent=Msa1026710-mRNA-1
chr7_1 CDS 58889664 58890040 58889664 ID=Msa1026710-mRNA-1:cds;Parent=Msa1026710-mRNA-1
chr7_1 CDS 58890125 58890235 58890125 ID=Msa1026710-mRNA-1:cds;Parent=Msa1026710-mRNA-1
chr7_1 CDS 58890329 58890424 58890329 ID=Msa1026710-mRNA-1:cds;Parent=Msa1026710-mRNA-1
chr7_1 CDS 58890888 58891559 58890888 ID=Msa1026710-mRNA-1:cds;Parent=Msa1026710-mRNA-1
chr7_1 three_prime_UTR 58891560 58891807 58891560 ID=Msa1026710-mRNA-1:three_prime_utr;Parent=Msa1026710-mRNA-1
Gene Sequence

>Msa1026710

ATGGCCGCCGCCGCTAACGCTACTTCCCAAACCCTCCGTCTCCCTTCACCATCTTCCCTTTCTCTCTCCTCCAAACTCCCTCTCTCCTCCGCCTTCTCCGTCTCTCTCCGCCCCCACAACCCCCGCCGTTCCCTCGTCGTCTTCGTCTCCTCTTCCCTCGACTCTAAACCCACCGTCCTCGTCGCTGAAAAGCTCGGCGAAGCTGGTCTCACTCTTCTCAAAGACTTCGCTAACGTCGACTGCTCCTACAATCTCACTCCTGAGGAGCTTTGCACCAAGATCTCTCTCTGTGATGCTCTCATCGTTCGCAGTGGTACCAAAGTCTCACGTGAAGTGTTTGAATCTTCCGGTGGAAGACTCAAGGTTGTTGGTAGAGCTGGTGTTGGTATTGATAACGTGGATCTGGCCGCCGCTACCGAACATGGTTGCTTGGTTGTTAATGCTCCCACCGCTAACACTGTTGCCGCCGCTGAACACGGGATCGCGCTCTTAGCTGGCATGGCTAGAAATGTTGCTCAGGCTGATGCTTCTATCAAAGCTGGGAAATGGGAGAGAAGTAAGTATGTTGGAGTTTCCCTAGTTGGGAAGACACTTGCTGTAATGGGATTTGGGAAGGTTGGAACTGAGGTTGCTAGGCGTGCTAAGGGGCTTGGTATGAAGGTTATTGCTCATGATCCTTATGCTCCTGCTGATCGTGCTCATGCTATTGGTGTTGAGCTTGTGAGTTTTGAGGAGGCTATTGCCACCGCTGATTTCATCTCTTTGCACATGCCTCTTACGCCTGCTACCAATAAGATGCTCAATGATGAGACTTTTGCCAAGATGAAGAAAGGAGTTAGAATTGTTAATGTTGCTCGTGGTGGAGTCATTGACGAGGATGCACTTGTTAGAGCATTGGATTCTGGAATTGTAGCTCAGGCGGCTCTTGATGTTTTCACGGTGGAACCACCCACCAAAGACAGCAAGTTGGTTATGCATGAGCTAGTTACTGCAACACCTCATCTTGGTGCCAGTACCATGGAAGCTCAGGAAGGTGTAGCTATTGAAATAGCAGAAGCTGTCGTTGGGGCTTTGAAAGGGGAGCTTGCTTCTACTGCAGTCAATGCACCAATGGTTTCCTCAGAGGTGTTAACAGAACTAAAACCATTTGTTGATCTTGCTGAGAAACTGGGTAGGTTGGCTGTCCAACTGGTAGCAGGAGGAAGCGGTGTAAAGACAGTGAAAGTGACTTACGCTTCCGCTAGGGCCCCTGATGATCTTGACACTCGTCTTCTTCGTGCTATGATAACAAAGGGTCTGATTGAGCCCATATCCAGTGTTTTCGTGAACTTAGTTAATGCTGACTTCACTGCTAAACAAAGAGGGCTAAGAATTACTGAGGAGAGAGTTATTCTTGATGGTTCACCTGAGAATCCACTTGAATTCATCCAAGTCCAGATTGCTAACGTGGAATCTCGATTTGCTAGTGCCATATCAGATTCAGGGGAGGTCACGGTGGAGGGTCGTGTGAAGGATGGTGTCCCCCATCTTACAAAGGTTGGATCTTTTGAAGTTGATGTGAGTTTGGAAGGTAGCATTATACTTTGCAGGCAAGTAGATCAACCAGGTATGATTGGAAAGGTGGGAAGCATCTTGGGTGAAGAGAATGTGAATGTCAGCTTCATGAGTGTTGGAAGGATTGCTCCACGCAAGCAGGCTGTGATGGCAATTGGAGTTGATGAGCAACCACGCAAAGAATCTTTGCAAAGGATTGGAGACATTCCTGCTGTTGAAGAATTTGTTTTCCTCAAGTTGTAA
Protein sequence

>Msa1026710

MAAAANATSQTLRLPSPSSLSLSSKLPLSSAFSVSLRPHNPRRSLVVFVSSSLDSKPTVLVAEKLGEAGLTLLKDFANVDCSYNLTPEELCTKISLCDALIVRSGTKVSREVFESSGGRLKVVGRAGVGIDNVDLAAATEHGCLVVNAPTANTVAAAEHGIALLAGMARNVAQADASIKAGKWERSKYVGVSLVGKTLAVMGFGKVGTEVARRAKGLGMKVIAHDPYAPADRAHAIGVELVSFEEAIATADFISLHMPLTPATNKMLNDETFAKMKKGVRIVNVARGGVIDEDALVRALDSGIVAQAALDVFTVEPPTKDSKLVMHELVTATPHLGASTMEAQEGVAIEIAEAVVGALKGELASTAVNAPMVSSEVLTELKPFVDLAEKLGRLAVQLVAGGSGVKTVKVTYASARAPDDLDTRLLRAMITKGLIEPISSVFVNLVNADFTAKQRGLRITEERVILDGSPENPLEFIQVQIANVESRFASAISDSGEVTVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGKVGSILGEENVNVSFMSVGRIAPRKQAVMAIGVDEQPRKESLQRIGDIPAVEEFVFLKL*