AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1164830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1164830 MtrunA17_Chr7g0272881 97.619 252 5 1 23 274 1 251 0.0 513
Msa1164830 MtrunA17_Chr2g0319981 31.019 216 126 10 30 229 19 227 7.80e-18 82.0
Msa1164830 MtrunA17_Chr4g0041461 31.361 169 90 7 74 229 74 229 2.52e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1164830 AT3G05345.1 62.353 255 82 7 23 274 1 244 1.71e-109 317
Msa1164830 AT2G42750.1 31.081 222 124 9 24 229 25 233 1.69e-16 78.6

Find 98 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCATCACAGAGAATTATTT+TGG 0.134244 7_4:-56581347 Msa1164830:CDS
AACATGCTGGGTTGAAAATT+TGG 0.174458 7_4:+56580904 None:intergenic
CCTTCAATTTAAACATTCTT+TGG 0.229699 7_4:-56580160 Msa1164830:three_prime_UTR
TTAAACATTCTTTGGATTCC+TGG 0.261201 7_4:-56580152 Msa1164830:three_prime_UTR
TCGAAAAGCGGCTTTAATTT+CGG 0.279196 7_4:+56582474 None:intergenic
CTCAGTGCTATCTATAGTTT+GGG 0.286961 7_4:+56580850 None:intergenic
TTCACATTTGTCTCTTCAAC+TGG 0.307988 7_4:-56581636 Msa1164830:CDS
TCTCAGTGCTATCTATAGTT+TGG 0.308680 7_4:+56580849 None:intergenic
AAAAGTCATGTAGTGAGATT+TGG 0.310240 7_4:+56580576 None:intergenic
TTTGGTGTTTGGTTTCTCTA+TGG 0.328111 7_4:-56580301 Msa1164830:three_prime_UTR
CAACCTGAACGATCCCATTA+TGG 0.329530 7_4:+56582669 None:intergenic
CTGTGTTTGATAACACTTGC+AGG 0.333104 7_4:-56580465 Msa1164830:three_prime_UTR
CCAAAGAATGTTTAAATTGA+AGG 0.339907 7_4:+56580160 None:intergenic
CACAGTTGGTCTTACCATAA+TGG 0.340880 7_4:-56582683 Msa1164830:CDS
ACTTTGACATAATCTTCCTT+AGG 0.356859 7_4:+56580396 None:intergenic
GTTATTCTCAAACTTAGCTT+TGG 0.385126 7_4:+56580952 None:intergenic
CTACGGATGAATTTGGTGTT+TGG 0.396165 7_4:-56580312 Msa1164830:three_prime_UTR
TGTGGTTGACTTTGGGATCA+AGG 0.398210 7_4:-56580358 Msa1164830:three_prime_UTR
GTGTGTGCTACGGATGAATT+TGG 0.398410 7_4:-56580319 Msa1164830:three_prime_UTR
TGCCTCAGCTGATGTATCAT+AGG 0.402393 7_4:+56580997 None:intergenic
ATGGTTCTGTGGTTGACTTT+GGG 0.411324 7_4:-56580365 Msa1164830:three_prime_UTR
GCTTCACTTAACCCCTCCTA+TGG 0.418754 7_4:-56582728 Msa1164830:CDS
GAACACTTGATAGTTATTAC+AGG 0.423882 7_4:+56580182 None:intergenic
CATCTCTGTTGAGGTCTGGA+TGG 0.429052 7_4:+56582346 None:intergenic
TTACCATAATGGGATCGTTC+AGG 0.432032 7_4:-56582672 Msa1164830:CDS
ATTTCGGCGGCTGAGCAGTT+AGG 0.433399 7_4:+56582490 None:intergenic
CCAAAATAATTCTCTGTGAT+GGG 0.435014 7_4:+56581347 None:intergenic
GATGGTTCTGTGGTTGACTT+TGG 0.437474 7_4:-56580366 Msa1164830:three_prime_UTR
ACATAATGAATGCAACTTCT+CGG 0.437627 7_4:+56581373 None:intergenic
ACAGTTGGTCTTACCATAAT+GGG 0.440049 7_4:-56582682 Msa1164830:CDS
TGGGATCAAGGCATATACTA+TGG 0.440374 7_4:-56580346 Msa1164830:three_prime_UTR
TCCAAAATAATTCTCTGTGA+TGG 0.443344 7_4:+56581346 None:intergenic
GTCCAACAGCGCACTGAACT+TGG 0.458552 7_4:+56581401 None:intergenic
CTTTGACATAATCTTCCTTA+GGG 0.470387 7_4:+56580397 None:intergenic
GTTAATGAGTTTCTTTGTGT+CGG 0.474240 7_4:-56581952 Msa1164830:CDS
AATTTGTGATGGTGTGTAGT+TGG 0.477410 7_4:+56582140 None:intergenic
AACAACTGTTTATAGGTCAT+GGG 0.479720 7_4:-56581432 Msa1164830:intron
CATAATGAATGCAACTTCTC+GGG 0.481674 7_4:+56581374 None:intergenic
ACGTAATACAACCACAATGA+TGG 0.482587 7_4:+56580263 None:intergenic
TCCTCTGCTTACACCGTCCT+CGG 0.486253 7_4:-56582520 Msa1164830:CDS
AGATAGTCACTACTTTATAG+TGG 0.493927 7_4:+56580228 None:intergenic
TTTCAACCCAGCATGTTGAC+TGG 0.504611 7_4:-56580898 Msa1164830:CDS
TTCACACTCTGGTCTGTCAA+AGG 0.509595 7_4:+56581990 None:intergenic
GACGGTGTAAGCAGAGGAAG+TGG 0.512906 7_4:+56582525 None:intergenic
CAGCAACTCCCTCTGACTAA+AGG 0.521356 7_4:+56580485 None:intergenic
CTTCACTTAACCCCTCCTAT+GGG 0.521637 7_4:-56582727 Msa1164830:CDS
TCACACTCTGGTCTGTCAAA+GGG 0.522302 7_4:+56581991 None:intergenic
TACGTTTCAATAATTTGTGA+TGG 0.522555 7_4:+56582129 None:intergenic
CCGTGTAATTCAAGCATACC+AGG 0.525324 7_4:-56582292 Msa1164830:intron
TTTCAGAATACTGAGGTGTA+AGG 0.526250 7_4:+56580766 None:intergenic
TGCTGCCTGGAGTGACCCTA+AGG 0.528250 7_4:-56580412 Msa1164830:three_prime_UTR
AGATCAAAAGCTTCACACTC+TGG 0.531042 7_4:+56581979 None:intergenic
CGGCGGCTGAGCAGTTAGGT+TGG 0.531621 7_4:+56582494 None:intergenic
TACCAAGTTCAGTGCGCTGT+TGG 0.532355 7_4:-56581403 Msa1164830:CDS
AATTGCAGAGGCAGAGAAGA+TGG 0.533070 7_4:-56582556 Msa1164830:CDS
ATCTTCCTTAGGGTCACTCC+AGG 0.536871 7_4:+56580407 None:intergenic
GCTAAAACCAGTCAACATGC+TGG 0.539656 7_4:+56580891 None:intergenic
ACCATGCTAATACTGCTGCC+TGG 0.540392 7_4:-56580425 Msa1164830:three_prime_UTR
GCCTCAGCTGATGTATCATA+GGG 0.543724 7_4:+56580998 None:intergenic
TGACTCTTATTCCATCATTG+TGG 0.547489 7_4:-56580274 Msa1164830:three_prime_UTR
CGTTTAAATCCTTTAGTCAG+AGG 0.553357 7_4:-56580494 Msa1164830:three_prime_UTR
AAGGATTTAAACGCCATGGC+AGG 0.561465 7_4:+56580504 None:intergenic
TAGTTTGGGGAGTGAAGACA+TGG 0.562442 7_4:+56580864 None:intergenic
GTTTAAATCCTTTAGTCAGA+GGG 0.564950 7_4:-56580493 Msa1164830:three_prime_UTR
TATGTCAAAGTCAATTGTGA+TGG 0.565976 7_4:-56580384 Msa1164830:three_prime_UTR
GAGTTTCTTTGTGTCGGCAA+AGG 0.566077 7_4:-56581946 Msa1164830:intron
CTATGGTGGTGTGTGTGCTA+CGG 0.586058 7_4:-56580329 Msa1164830:three_prime_UTR
CTAAAACCAGTCAACATGCT+GGG 0.591004 7_4:+56580892 None:intergenic
AGAAGAGAGCACAACACAAG+TGG 0.593219 7_4:-56582771 None:intergenic
CAAAATAATTCTCTGTGATG+GGG 0.597740 7_4:+56581348 None:intergenic
TTCTTTAAAGACACAGACAA+AGG 0.611750 7_4:+56582592 None:intergenic
TCCAGGCAGCAGTATTAGCA+TGG 0.613571 7_4:+56580424 None:intergenic
ACTAAAGGATTTAAACGCCA+TGG 0.620443 7_4:+56580500 None:intergenic
ACAGCACGTGCATCTTCTCA+AGG 0.621543 7_4:-56581612 Msa1164830:intron
TGATACTTTGGATCGAAAAG+CGG 0.622876 7_4:+56582462 None:intergenic
GTTAGGTTGGACTCCGAGGA+CGG 0.622942 7_4:+56582507 None:intergenic
AGTCAATTGTGATGGTTCTG+TGG 0.623540 7_4:-56580376 Msa1164830:three_prime_UTR
TCCGAGGACGGTGTAAGCAG+AGG 0.625114 7_4:+56582519 None:intergenic
CCTGGTATGCTTGAATTACA+CGG 0.626987 7_4:+56582292 None:intergenic
ACAACTGTTTATAGGTCATG+GGG 0.627093 7_4:-56581431 Msa1164830:intron
AAGTCGAAGTTGGACACAGT+TGG 0.629994 7_4:-56582697 Msa1164830:CDS
AGCAGTTAGGTTGGACTCCG+AGG 0.631176 7_4:+56582503 None:intergenic
TCACTTAACCCCTCCTATGG+GGG 0.636413 7_4:-56582725 Msa1164830:CDS
TTCACTTAACCCCTCCTATG+GGG 0.637290 7_4:-56582726 Msa1164830:CDS
AAAACAAGAACGAATTGCAG+AGG 0.651160 7_4:-56582568 Msa1164830:CDS
ATGAGGTGCTCTTTCCACAC+AGG 0.664251 7_4:+56581662 None:intergenic
ACCCTATGATACATCAGCTG+AGG 0.667271 7_4:-56580999 Msa1164830:CDS
TAAGCAGAGGAAGTGGACAG+AGG 0.671934 7_4:+56582532 None:intergenic
TTACATGTTTCAGAATACTG+AGG 0.676400 7_4:+56580759 None:intergenic
GATCAAGGCATATACTATGG+TGG 0.688229 7_4:-56580343 Msa1164830:three_prime_UTR
GATTGCTGATGAGACAGTCA+TGG 0.694367 7_4:-56580828 Msa1164830:three_prime_UTR
AAAAGCGGCTTTAATTTCGG+CGG 0.695406 7_4:+56582477 None:intergenic
GAGACAAATGTGAAAGCATG+AGG 0.702751 7_4:+56581645 None:intergenic
TCAGTGCTATCTATAGTTTG+GGG 0.710241 7_4:+56580851 None:intergenic
ACACAGACAAAGGAAAAGTG+CGG 0.720075 7_4:+56582602 None:intergenic
TGTTTGATAACACTTGCAGG+TGG 0.732567 7_4:-56580462 Msa1164830:three_prime_UTR
AGCTTGTTCAAATTCCTGTG+TGG 0.759817 7_4:-56581676 Msa1164830:CDS
AGTTTGGGGAGTGAAGACAT+GGG 0.801612 7_4:+56580865 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTCTTTAATTTATTACTT+AGG - chr7_4:56580498-56580517 Msa1164830:three_prime_UTR 15.0%
!! TAATAAATTTCTCAAAATGA+AGG + chr7_4:56581318-56581337 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTACTTGG+TGG - chr7_4:56581606-56581625 Msa1164830:intron 15.0%
!!! TTTTTTTTTTTTTACTTGGT+GGG - chr7_4:56581607-56581626 Msa1164830:intron 15.0%
!! AAAGATAATATATTGACAAA+GGG + chr7_4:56581658-56581677 None:intergenic 15.0%
!! ATCTTTCTTATAAAACTAAA+AGG - chr7_4:56581672-56581691 Msa1164830:CDS 15.0%
!! ATGATAGAAATAGATAAATA+GGG + chr7_4:56581722-56581741 None:intergenic 15.0%
!! TATGATAGAAATAGATAAAT+AGG + chr7_4:56581723-56581742 None:intergenic 15.0%
!!! TATAACATATTATTACCTTT+TGG - chr7_4:56581769-56581788 Msa1164830:intron 15.0%
!! TTAAACTCATCAATGTAAAA+TGG + chr7_4:56581172-56581191 None:intergenic 20.0%
!! GAAAGATAATATATTGACAA+AGG + chr7_4:56581659-56581678 None:intergenic 20.0%
!! AAAAATTGTATGATTCCAAA+AGG + chr7_4:56581787-56581806 None:intergenic 20.0%
!! AAAGGAAATAAGAAATCAAA+TGG + chr7_4:56581831-56581850 None:intergenic 20.0%
!! GCAAAATCTTAAAATAAGAT+GGG + chr7_4:56582183-56582202 None:intergenic 20.0%
!! TGCAAAATCTTAAAATAAGA+TGG + chr7_4:56582184-56582203 None:intergenic 20.0%
!!! CTTATTTTAAGATTTTGCAA+CGG - chr7_4:56582185-56582204 Msa1164830:intron 20.0%
!!! TTTTTATTATAGAAATGACC+AGG + chr7_4:56582746-56582765 None:intergenic 20.0%
! AATGATTGATGTTGATACTT+TGG + chr7_4:56580430-56580449 None:intergenic 25.0%
! TGAATTGAAGAGAATGAAAA+TGG + chr7_4:56580466-56580485 None:intergenic 25.0%
!! TACGTTTCAATAATTTGTGA+TGG + chr7_4:56580751-56580770 None:intergenic 25.0%
! ACAATTTAGACCACATATAT+CGG - chr7_4:56581020-56581039 Msa1164830:intron 25.0%
! AATTTCTCAAAATGAAGGAA+GGG + chr7_4:56581313-56581332 None:intergenic 25.0%
! AAATTTCTCAAAATGAAGGA+AGG + chr7_4:56581314-56581333 None:intergenic 25.0%
! TATCTTCAACAACTGTTTAT+AGG - chr7_4:56581438-56581457 Msa1164830:intron 25.0%
! ATAAATAGGGAAATTAAGCA+TGG + chr7_4:56581709-56581728 None:intergenic 25.0%
! ATACTGAAACATCAACAAAA+AGG + chr7_4:56581849-56581868 None:intergenic 25.0%
!!! GAAAATTTGGTTTTCTTCTT+TGG + chr7_4:56581963-56581982 None:intergenic 25.0%
! GCAGCTCATAAAAAATTTAT+TGG + chr7_4:56582082-56582101 None:intergenic 25.0%
!!! ATTTTTTATGAGCTGCTTAT+AGG - chr7_4:56582086-56582105 Msa1164830:intron 25.0%
! CCAAAGAATGTTTAAATTGA+AGG + chr7_4:56582720-56582739 None:intergenic 25.0%
! CCTTCAATTTAAACATTCTT+TGG - chr7_4:56582717-56582736 Msa1164830:CDS 25.0%
! TTCTTTAAAGACACAGACAA+AGG + chr7_4:56580288-56580307 None:intergenic 30.0%
! TTTCATTTTCATCTCTGTTG+AGG + chr7_4:56580543-56580562 None:intergenic 30.0%
CCGTAGATTTCAAAACAATA+CGG + chr7_4:56580801-56580820 None:intergenic 30.0%
!!! CCGTATTGTTTTGAAATCTA+CGG - chr7_4:56580798-56580817 Msa1164830:three_prime_UTR 30.0%
GTTAATGAGTTTCTTTGTGT+CGG - chr7_4:56580925-56580944 Msa1164830:CDS 30.0%
ACATAATTTCATGTCGTGTA+AGG + chr7_4:56580990-56581009 None:intergenic 30.0%
AACAACTGTTTATAGGTCAT+GGG - chr7_4:56581445-56581464 Msa1164830:intron 30.0%
ACATAATGAATGCAACTTCT+CGG + chr7_4:56581507-56581526 None:intergenic 30.0%
CAAAATAATTCTCTGTGATG+GGG + chr7_4:56581532-56581551 None:intergenic 30.0%
CCAAAATAATTCTCTGTGAT+GGG + chr7_4:56581533-56581552 None:intergenic 30.0%
TCCAAAATAATTCTCTGTGA+TGG + chr7_4:56581534-56581553 None:intergenic 30.0%
!!! ATCACAGAGAATTATTTTGG+AGG - chr7_4:56581533-56581552 Msa1164830:intron 30.0%
GTTATTCTCAAACTTAGCTT+TGG + chr7_4:56581928-56581947 None:intergenic 30.0%
TTACATGTTTCAGAATACTG+AGG + chr7_4:56582121-56582140 None:intergenic 30.0%
TGTAAGCTACTTACTACAAT+CGG - chr7_4:56582136-56582155 Msa1164830:CDS 30.0%
!!! TTTTAAGATTTTGCAACGGA+TGG - chr7_4:56582189-56582208 Msa1164830:intron 30.0%
TCTTTCAGTGAATGAATCAA+GGG - chr7_4:56582235-56582254 Msa1164830:intron 30.0%
AAAAGTCATGTAGTGAGATT+TGG + chr7_4:56582304-56582323 None:intergenic 30.0%
! AATTTTTCGTCATTTCCACA+AGG + chr7_4:56582327-56582346 None:intergenic 30.0%
! ATTTCTAATTTTTCCTGCCA+TGG - chr7_4:56582360-56582379 Msa1164830:CDS 30.0%
GTTTAAATCCTTTAGTCAGA+GGG - chr7_4:56582384-56582403 Msa1164830:intron 30.0%
CTTTGACATAATCTTCCTTA+GGG + chr7_4:56582483-56582502 None:intergenic 30.0%
ACTTTGACATAATCTTCCTT+AGG + chr7_4:56582484-56582503 None:intergenic 30.0%
TATGTCAAAGTCAATTGTGA+TGG - chr7_4:56582493-56582512 Msa1164830:CDS 30.0%
AGATAGTCACTACTTTATAG+TGG + chr7_4:56582652-56582671 None:intergenic 30.0%
! GAACACTTGATAGTTATTAC+AGG + chr7_4:56582698-56582717 None:intergenic 30.0%
TTAAACATTCTTTGGATTCC+TGG - chr7_4:56582725-56582744 Msa1164830:CDS 30.0%
!! ACAGTTGGTCTTACCATAAT+GGG - chr7_4:56580195-56580214 Msa1164830:three_prime_UTR 35.0%
AAAACAAGAACGAATTGCAG+AGG - chr7_4:56580309-56580328 Msa1164830:three_prime_UTR 35.0%
! TCGAAAAGCGGCTTTAATTT+CGG + chr7_4:56580406-56580425 None:intergenic 35.0%
TGATACTTTGGATCGAAAAG+CGG + chr7_4:56580418-56580437 None:intergenic 35.0%
! TATGATGTGTGGTAGTGAAT+AGG + chr7_4:56580652-56580671 None:intergenic 35.0%
ACTATGCTGTATATGATGTG+TGG + chr7_4:56580663-56580682 None:intergenic 35.0%
! CTGCAGTAAAAAAAGCATGA+AGG + chr7_4:56580710-56580729 None:intergenic 35.0%
! AATTTGTGATGGTGTGTAGT+TGG + chr7_4:56580740-56580759 None:intergenic 35.0%
!!! TGCTGACTTTTCACTTTTCA+GGG - chr7_4:56580852-56580871 Msa1164830:three_prime_UTR 35.0%
TTCACATTTGTCTCTTCAAC+TGG - chr7_4:56581241-56581260 Msa1164830:intron 35.0%
CAACAACTGTTTATAGGTCA+TGG - chr7_4:56581444-56581463 Msa1164830:intron 35.0%
ACAACTGTTTATAGGTCATG+GGG - chr7_4:56581446-56581465 Msa1164830:intron 35.0%
CATAATGAATGCAACTTCTC+GGG + chr7_4:56581506-56581525 None:intergenic 35.0%
! CCCATCACAGAGAATTATTT+TGG - chr7_4:56581530-56581549 Msa1164830:intron 35.0%
!!! TCTTCTTTGGCTTTTGGTAT+CGG + chr7_4:56581950-56581969 None:intergenic 35.0%
!!! TGGTTTTCTTCTTTGGCTTT+TGG + chr7_4:56581956-56581975 None:intergenic 35.0%
! AACATGCTGGGTTGAAAATT+TGG + chr7_4:56581976-56581995 None:intergenic 35.0%
TCAGTGCTATCTATAGTTTG+GGG + chr7_4:56582029-56582048 None:intergenic 35.0%
CTCAGTGCTATCTATAGTTT+GGG + chr7_4:56582030-56582049 None:intergenic 35.0%
TCTCAGTGCTATCTATAGTT+TGG + chr7_4:56582031-56582050 None:intergenic 35.0%
TTTCAGAATACTGAGGTGTA+AGG + chr7_4:56582114-56582133 None:intergenic 35.0%
GTAAGCTACTTACTACAATC+GGG - chr7_4:56582137-56582156 Msa1164830:CDS 35.0%
CTCTTTCAGTGAATGAATCA+AGG - chr7_4:56582234-56582253 Msa1164830:intron 35.0%
ACTAAAGGATTTAAACGCCA+TGG + chr7_4:56582380-56582399 None:intergenic 35.0%
CGTTTAAATCCTTTAGTCAG+AGG - chr7_4:56582383-56582402 Msa1164830:intron 35.0%
!! TTTGGTGTTTGGTTTCTCTA+TGG - chr7_4:56582576-56582595 Msa1164830:CDS 35.0%
TGACTCTTATTCCATCATTG+TGG - chr7_4:56582603-56582622 Msa1164830:CDS 35.0%
ACGTAATACAACCACAATGA+TGG + chr7_4:56582617-56582636 None:intergenic 35.0%
! AGTAGTGACTATCTTTTCAC+AGG - chr7_4:56582658-56582677 Msa1164830:CDS 35.0%
!! GGGTTAAGTGAAGCATTTTC+TGG + chr7_4:56580143-56580162 None:intergenic 40.0%
!! CACAGTTGGTCTTACCATAA+TGG - chr7_4:56580194-56580213 Msa1164830:three_prime_UTR 40.0%
! TTACCATAATGGGATCGTTC+AGG - chr7_4:56580205-56580224 Msa1164830:three_prime_UTR 40.0%
ACACAGACAAAGGAAAAGTG+CGG + chr7_4:56580278-56580297 None:intergenic 40.0%
! AAAAGCGGCTTTAATTTCGG+CGG + chr7_4:56580403-56580422 None:intergenic 40.0%
! TTTTCATCTCTGTTGAGGTC+TGG + chr7_4:56580538-56580557 None:intergenic 40.0%
CCTGGTATGCTTGAATTACA+CGG + chr7_4:56580588-56580607 None:intergenic 40.0%
AGTTAGTACCAAGTAGTACC+TGG + chr7_4:56580606-56580625 None:intergenic 40.0%
CTGAAAAGTGAAAAGTCAGC+AGG + chr7_4:56580853-56580872 None:intergenic 40.0%
!!! CTGCTGACTTTTCACTTTTC+AGG - chr7_4:56580851-56580870 Msa1164830:three_prime_UTR 40.0%
AGATCAAAAGCTTCACACTC+TGG + chr7_4:56580901-56580920 None:intergenic 40.0%
TAGACCACATATATCGGTGT+AGG - chr7_4:56581026-56581045 Msa1164830:intron 40.0%
CTGCATTTAATGTCCTACAC+TGG - chr7_4:56581052-56581071 Msa1164830:intron 40.0%
! ATTAAAGGTGTGTCCAGTGT+AGG + chr7_4:56581068-56581087 None:intergenic 40.0%
ACACCTTTAATCTGCAAGTG+TGG - chr7_4:56581077-56581096 Msa1164830:intron 40.0%
GATCCACACTTGCAGATTAA+AGG + chr7_4:56581083-56581102 None:intergenic 40.0%
TACAATGTCTCAACGTCACT+TGG - chr7_4:56581118-56581137 Msa1164830:intron 40.0%
ACAATGTCTCAACGTCACTT+GGG - chr7_4:56581119-56581138 Msa1164830:intron 40.0%
! AGCTTGTTCAAATTCCTGTG+TGG - chr7_4:56581201-56581220 Msa1164830:intron 40.0%
! GAGACAAATGTGAAAGCATG+AGG + chr7_4:56581235-56581254 None:intergenic 40.0%
!! TTTTGGAGGAGCTACTTAAC+AGG - chr7_4:56581547-56581566 Msa1164830:intron 40.0%
!!! TTTTTTTACTTGGTGGGCTG+TGG - chr7_4:56581613-56581632 Msa1164830:CDS 40.0%
CTAAAACCAGTCAACATGCT+GGG + chr7_4:56581988-56582007 None:intergenic 40.0%
! TAAGATTTTGCAACGGATGG+TGG - chr7_4:56582192-56582211 Msa1164830:intron 40.0%
! AAGATTTTGCAACGGATGGT+GGG - chr7_4:56582193-56582212 Msa1164830:intron 40.0%
! CACTACATGACTTTTCCTTG+TGG - chr7_4:56582309-56582328 Msa1164830:CDS 40.0%
! CTGTGTTTGATAACACTTGC+AGG - chr7_4:56582412-56582431 Msa1164830:intron 40.0%
! TGTTTGATAACACTTGCAGG+TGG - chr7_4:56582415-56582434 Msa1164830:intron 40.0%
! AGTCAATTGTGATGGTTCTG+TGG - chr7_4:56582501-56582520 Msa1164830:CDS 40.0%
! ATGGTTCTGTGGTTGACTTT+GGG - chr7_4:56582512-56582531 Msa1164830:CDS 40.0%
TGGGATCAAGGCATATACTA+TGG - chr7_4:56582531-56582550 Msa1164830:CDS 40.0%
GATCAAGGCATATACTATGG+TGG - chr7_4:56582534-56582553 Msa1164830:CDS 40.0%
!! CTACGGATGAATTTGGTGTT+TGG - chr7_4:56582565-56582584 Msa1164830:CDS 40.0%
CTTCACTTAACCCCTCCTAT+GGG - chr7_4:56580150-56580169 Msa1164830:three_prime_UTR 45.0%
TTCACTTAACCCCTCCTATG+GGG - chr7_4:56580151-56580170 Msa1164830:three_prime_UTR 45.0%
ACTTACTTTCCCCCATAGGA+GGG + chr7_4:56580164-56580183 None:intergenic 45.0%
TTCGACTTACTTTCCCCCAT+AGG + chr7_4:56580168-56580187 None:intergenic 45.0%
AAGTCGAAGTTGGACACAGT+TGG - chr7_4:56580180-56580199 Msa1164830:three_prime_UTR 45.0%
CAACCTGAACGATCCCATTA+TGG + chr7_4:56580211-56580230 None:intergenic 45.0%
AATTGCAGAGGCAGAGAAGA+TGG - chr7_4:56580321-56580340 Msa1164830:three_prime_UTR 45.0%
CCGTGTAATTCAAGCATACC+AGG - chr7_4:56580585-56580604 Msa1164830:intron 45.0%
CAAGCATACCAGGTACTACT+TGG - chr7_4:56580595-56580614 Msa1164830:intron 45.0%
TCACACTCTGGTCTGTCAAA+GGG + chr7_4:56580889-56580908 None:intergenic 45.0%
TTCACACTCTGGTCTGTCAA+AGG + chr7_4:56580890-56580909 None:intergenic 45.0%
! GAGTTTCTTTGTGTCGGCAA+AGG - chr7_4:56580931-56580950 Msa1164830:CDS 45.0%
! TTCTTTGTGTCGGCAAAGGT+AGG - chr7_4:56580935-56580954 Msa1164830:CDS 45.0%
GTGTCCTACACCGATATATG+TGG + chr7_4:56581033-56581052 None:intergenic 45.0%
ACCCTATGATACATCAGCTG+AGG - chr7_4:56581878-56581897 Msa1164830:intron 45.0%
GCCTCAGCTGATGTATCATA+GGG + chr7_4:56581882-56581901 None:intergenic 45.0%
TGCCTCAGCTGATGTATCAT+AGG + chr7_4:56581883-56581902 None:intergenic 45.0%
TTTCAACCCAGCATGTTGAC+TGG - chr7_4:56581979-56581998 Msa1164830:CDS 45.0%
GCTAAAACCAGTCAACATGC+TGG + chr7_4:56581989-56582008 None:intergenic 45.0%
AGTTTGGGGAGTGAAGACAT+GGG + chr7_4:56582015-56582034 None:intergenic 45.0%
TAGTTTGGGGAGTGAAGACA+TGG + chr7_4:56582016-56582035 None:intergenic 45.0%
GATTGCTGATGAGACAGTCA+TGG - chr7_4:56582049-56582068 Msa1164830:intron 45.0%
! AGATTTTGCAACGGATGGTG+GGG - chr7_4:56582194-56582213 Msa1164830:intron 45.0%
ACGTGAATGCGTGATATTGC+AGG - chr7_4:56582274-56582293 Msa1164830:intron 45.0%
AAGGATTTAAACGCCATGGC+AGG + chr7_4:56582376-56582395 None:intergenic 45.0%
! GATGGTTCTGTGGTTGACTT+TGG - chr7_4:56582511-56582530 Msa1164830:CDS 45.0%
!! TGTGGTTGACTTTGGGATCA+AGG - chr7_4:56582519-56582538 Msa1164830:CDS 45.0%
GTGTGTGCTACGGATGAATT+TGG - chr7_4:56582558-56582577 Msa1164830:CDS 45.0%
!! AAAAAAAAAAAAAAAATTGT+AGG + chr7_4:56581595-56581614 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTACT+TGG - chr7_4:56581603-56581622 Msa1164830:intron 5.0%
GCTTCACTTAACCCCTCCTA+TGG - chr7_4:56580149-56580168 Msa1164830:three_prime_UTR 50.0%
TCACTTAACCCCTCCTATGG+GGG - chr7_4:56580152-56580171 Msa1164830:three_prime_UTR 50.0%
CTTACTTTCCCCCATAGGAG+GGG + chr7_4:56580163-56580182 None:intergenic 50.0%
GACTTACTTTCCCCCATAGG+AGG + chr7_4:56580165-56580184 None:intergenic 50.0%
GGGGGAAAGTAAGTCGAAGT+TGG - chr7_4:56580170-56580189 Msa1164830:three_prime_UTR 50.0%
TAAGCAGAGGAAGTGGACAG+AGG + chr7_4:56580348-56580367 None:intergenic 50.0%
CATCTCTGTTGAGGTCTGGA+TGG + chr7_4:56580534-56580553 None:intergenic 50.0%
! ATGAGGTGCTCTTTCCACAC+AGG + chr7_4:56581218-56581237 None:intergenic 50.0%
ACAGCACGTGCATCTTCTCA+AGG - chr7_4:56581265-56581284 Msa1164830:intron 50.0%
TACCAAGTTCAGTGCGCTGT+TGG - chr7_4:56581474-56581493 Msa1164830:intron 50.0%
CAGCAACTCCCTCTGACTAA+AGG + chr7_4:56582395-56582414 None:intergenic 50.0%
ACCATGCTAATACTGCTGCC+TGG - chr7_4:56582452-56582471 Msa1164830:intron 50.0%
TCCAGGCAGCAGTATTAGCA+TGG + chr7_4:56582456-56582475 None:intergenic 50.0%
ATCTTCCTTAGGGTCACTCC+AGG + chr7_4:56582473-56582492 None:intergenic 50.0%
! CTATGGTGGTGTGTGTGCTA+CGG - chr7_4:56582548-56582567 Msa1164830:CDS 50.0%
GACGGTGTAAGCAGAGGAAG+TGG + chr7_4:56580355-56580374 None:intergenic 55.0%
TCCTCTGCTTACACCGTCCT+CGG - chr7_4:56580357-56580376 Msa1164830:three_prime_UTR 55.0%
!! GTTAGGTTGGACTCCGAGGA+CGG + chr7_4:56580373-56580392 None:intergenic 55.0%
!! AGCAGTTAGGTTGGACTCCG+AGG + chr7_4:56580377-56580396 None:intergenic 55.0%
ATTTCGGCGGCTGAGCAGTT+AGG + chr7_4:56580390-56580409 None:intergenic 55.0%
GTCCAACAGCGCACTGAACT+TGG + chr7_4:56581479-56581498 None:intergenic 55.0%
TCCGAGGACGGTGTAAGCAG+AGG + chr7_4:56580361-56580380 None:intergenic 60.0%
!! TGCAACGGATGGTGGGGAAG+TGG - chr7_4:56582200-56582219 Msa1164830:intron 60.0%
!! ACGGATGGTGGGGAAGTGGT+AGG - chr7_4:56582204-56582223 Msa1164830:intron 60.0%
!! CGGATGGTGGGGAAGTGGTA+GGG - chr7_4:56582205-56582224 Msa1164830:intron 60.0%
!! GGATGGTGGGGAAGTGGTAG+GGG - chr7_4:56582206-56582225 Msa1164830:intron 60.0%
!! GATGGTGGGGAAGTGGTAGG+GGG - chr7_4:56582207-56582226 Msa1164830:intron 60.0%
TGCTGCCTGGAGTGACCCTA+AGG - chr7_4:56582465-56582484 Msa1164830:intron 60.0%
CGGCGGCTGAGCAGTTAGGT+TGG + chr7_4:56580386-56580405 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 56580115 56582784 56580115 ID=Msa1164830;Name=Msa1164830
chr7_4 mRNA 56580115 56582784 56580115 ID=Msa1164830-mRNA-1;Parent=Msa1164830;Name=Msa1164830-mRNA-1;_AED=0.33;_eAED=0.33;_QI=32|1|1|1|0.85|0.75|8|618|274
chr7_4 exon 56580115 56580603 56580115 ID=Msa1164830-mRNA-1:exon:16945;Parent=Msa1164830-mRNA-1
chr7_4 exon 56580763 56581033 56580763 ID=Msa1164830-mRNA-1:exon:16944;Parent=Msa1164830-mRNA-1
chr7_4 exon 56581331 56581439 56581331 ID=Msa1164830-mRNA-1:exon:16943;Parent=Msa1164830-mRNA-1
chr7_4 exon 56581613 56581696 56581613 ID=Msa1164830-mRNA-1:exon:16942;Parent=Msa1164830-mRNA-1
chr7_4 exon 56581947 56582026 56581947 ID=Msa1164830-mRNA-1:exon:16941;Parent=Msa1164830-mRNA-1
chr7_4 exon 56582132 56582169 56582132 ID=Msa1164830-mRNA-1:exon:16940;Parent=Msa1164830-mRNA-1
chr7_4 exon 56582293 56582379 56582293 ID=Msa1164830-mRNA-1:exon:16939;Parent=Msa1164830-mRNA-1
chr7_4 exon 56582468 56582784 56582468 ID=Msa1164830-mRNA-1:exon:16938;Parent=Msa1164830-mRNA-1
chr7_4 five_prime_UTR 56582753 56582784 56582753 ID=Msa1164830-mRNA-1:five_prime_utr;Parent=Msa1164830-mRNA-1
chr7_4 CDS 56582468 56582752 56582468 ID=Msa1164830-mRNA-1:cds;Parent=Msa1164830-mRNA-1
chr7_4 CDS 56582293 56582379 56582293 ID=Msa1164830-mRNA-1:cds;Parent=Msa1164830-mRNA-1
chr7_4 CDS 56582132 56582169 56582132 ID=Msa1164830-mRNA-1:cds;Parent=Msa1164830-mRNA-1
chr7_4 CDS 56581947 56582026 56581947 ID=Msa1164830-mRNA-1:cds;Parent=Msa1164830-mRNA-1
chr7_4 CDS 56581613 56581696 56581613 ID=Msa1164830-mRNA-1:cds;Parent=Msa1164830-mRNA-1
chr7_4 CDS 56581331 56581439 56581331 ID=Msa1164830-mRNA-1:cds;Parent=Msa1164830-mRNA-1
chr7_4 CDS 56580892 56581033 56580892 ID=Msa1164830-mRNA-1:cds;Parent=Msa1164830-mRNA-1
chr7_4 three_prime_UTR 56580763 56580891 56580763 ID=Msa1164830-mRNA-1:three_prime_utr;Parent=Msa1164830-mRNA-1
chr7_4 three_prime_UTR 56580115 56580603 56580115 ID=Msa1164830-mRNA-1:three_prime_utr;Parent=Msa1164830-mRNA-1
Gene Sequence

>Msa1164830

ATGCTTCACTTAACCCCTCCTATGGGGGAAAGTAAGTCGAAGTTGGACACAGTTGGTCTTACCATAATGGGATCGTTCAGGTTGTTTAGCTTCAACTTAACAACAACAACAACTTCTATGTTTGTAAACCGCACTTTTCCTTTGTCTGTGTCTTTAAAGAATAAAACAAGAACGAATTGCAGAGGCAGAGAAGATGGTCCTCTGTCCACTTCCTCTGCTTACACCGTCCTCGGAGTCCAACCTAACTGCTCAGCCGCCGAAATTAAAGCCGCTTTTCGATCCAAAGTAAAACAGTTCCATCCAGACCTCAACAGAGATGAAAATGAAACATATTCTGATACTATGATTCGCCGTGTAATTCAAGCATACCAGATACTATCCAACTACACACCATCACAAATTATTGAAACGGAGTGCTTAGATCCCTTTGACAGACCAGAGTGTGAAGCTTTTGATCTTTTCGTTAATGAGTTTCTTTGTGTCGGCAAAGCTTGTTCAAATTCCTGTGTGGAAAGAGCACCTCATGCTTTCACATTTGTCTCTTCAACTGGAACAGCACGTGCATCTTCTCAAGGTCATGGGGAAGACTACCAAGTTCAGTGCGCTGTTGGACAATGCCCGAGAAGTTGCATTCATTATGTAACCCCATCACAGAGAATTATTTTGGAGGAGCTACTTAACAGTATAATAGATGCACCCTATGATACATCAGCTGAGGCAGACTTGCTCTATTCACTTATAACCAAAGCTAAGTTTGAGAATAACCGATACCAAAAGCCAAAGAAGAAAACCAAATTTTCAACCCAGCATGTTGACTGGTTTTAG

Protein sequence

>Msa1164830

MLHLTPPMGESKSKLDTVGLTIMGSFRLFSFNLTTTTTSMFVNRTFPLSVSLKNKTRTNCRGREDGPLSTSSAYTVLGVQPNCSAAEIKAAFRSKVKQFHPDLNRDENETYSDTMIRRVIQAYQILSNYTPSQIIETECLDPFDRPECEAFDLFVNEFLCVGKACSNSCVERAPHAFTFVSSTGTARASSQGHGEDYQVQCAVGQCPRSCIHYVTPSQRIILEELLNSIIDAPYDTSAEADLLYSLITKAKFENNRYQKPKKKTKFSTQHVDWF*