AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0797010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797010 MtrunA17_Chr5g0400081 98.923 557 5 1 1 556 328 884 0.0 1116
Msa0797010 MtrunA17_Chr4g0055151 88.309 556 65 0 1 556 333 888 0.0 1004
Msa0797010 MtrunA17_Chr1g0192761 41.781 584 279 11 8 544 398 967 1.13e-140 431
Msa0797010 MtrunA17_Chr1g0192711 43.407 182 90 4 368 544 1 174 3.65e-40 144
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797010 AT5G47040.1 82.944 557 94 1 1 556 332 888 0.0 940
Msa0797010 AT3G05780.1 41.935 558 303 9 1 545 372 921 3.02e-142 434
Msa0797010 AT5G26860.1 43.613 548 288 9 8 544 441 978 1.84e-141 434
Msa0797010 AT3G05790.2 42.523 555 285 9 14 544 383 927 1.27e-137 422
Msa0797010 AT3G05790.1 42.523 555 285 9 14 544 394 938 1.47e-137 422
Msa0797010 AT3G05775.1 39.394 99 38 2 8 106 54 130 1.63e-15 73.9

Find 205 sgRNAs with CRISPR-Local

Find 439 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGACACTAGGAAGGGTTTC+AGG 0.270699 5_3:+9111497 Msa0797010:three_prime_UTR
ACCATCGGTGCTAGCCAATT+TGG 0.273405 5_3:+9110993 Msa0797010:CDS
TCGCAATAATTGAATCATAA+TGG 0.282315 5_3:-9111350 None:intergenic
AAGTCCTTTAAGTTCCTTTC+AGG 0.285807 5_3:-9110958 None:intergenic
CCTACCTGAAAGGAACTTAA+AGG 0.295993 5_3:+9110954 Msa0797010:CDS
CGCAATAATTGAATCATAAT+GGG 0.296929 5_3:-9111349 None:intergenic
TCCGGTGGTTTCTAGAGTTT+TGG 0.304397 5_3:-9111418 None:intergenic
GCATTTAATTCCAAGAGTTC+TGG 0.305703 5_3:+9108116 Msa0797010:CDS
GGAAGCCGGTGTTCGAAGTT+TGG 0.311068 5_3:+9108705 Msa0797010:CDS
CCGATTGCAATGTTTAATAA+AGG 0.315445 5_3:+9111800 Msa0797010:three_prime_UTR
GTCCAGTTCAAGCTCTTTGC+TGG 0.319780 5_3:-9106300 None:intergenic
GGGACTTACTACACCACTTC+TGG 0.321663 5_3:+9108813 Msa0797010:CDS
GTGACATATCAAACACATTT+AGG 0.322166 5_3:+9108899 Msa0797010:CDS
ATGGAAGTCATTGAGCTTCC+TGG 0.327888 5_3:+9108057 Msa0797010:CDS
TAGAAAATAGATGAAGAAAA+AGG 0.340024 5_3:+9111899 Msa0797010:three_prime_UTR
GGATATCTGTCGGGCTGGTC+TGG 0.344976 5_3:+9109384 Msa0797010:CDS
AAGGGTGAATTGCATCTTAC+TGG 0.345401 5_3:+9109458 Msa0797010:CDS
CAGTAAAATAGCCACATAAA+TGG 0.352796 5_3:-9111697 None:intergenic
TCTTGGAATTAAATGCTTCA+TGG 0.358343 5_3:-9108109 None:intergenic
ATCTTCTATTGCTGCTGCTC+TGG 0.359511 5_3:+9106579 Msa0797010:CDS
CCAGCTGAAGGCCCATCTTT+AGG 0.362695 5_3:-9110020 None:intergenic
AACAGAGTTTACCTCCAAAT+TGG 0.373480 5_3:-9111007 None:intergenic
CATAAATGAGGCCAGGGAAG+AGG 0.382330 5_3:-9111663 None:intergenic
AACATTTGCTCAGGTTGAAT+AGG 0.396182 5_3:-9111613 None:intergenic
TTCGTTGGACCTCCTGGTGT+TGG 0.400352 5_3:+9106541 Msa0797010:CDS
TCAAGGAGAGGTGGAGGAAT+AGG 0.402044 5_3:-9108030 None:intergenic
GTTTCTCTTCCATCAAACTT+TGG 0.404295 5_3:-9109338 None:intergenic
ACATACATTGGAAGCATGCC+AGG 0.404875 5_3:+9106670 Msa0797010:CDS
CCTTTATTAAACATTGCAAT+CGG 0.409739 5_3:-9111800 None:intergenic
AACATTGCAATCGGGCCAAC+TGG 0.410054 5_3:-9111791 None:intergenic
TAGCAGTTCACGGGCTTACC+TGG 0.410075 5_3:+9106247 Msa0797010:CDS
ATGCAGCCTCCAAAGTTTGA+TGG 0.412591 5_3:+9109329 Msa0797010:intron
GAATCATAATGGGGCCTTCA+AGG 0.413344 5_3:-9111339 None:intergenic
CCATGTTGGTCCAGAACTCT+TGG 0.417544 5_3:-9108126 None:intergenic
CGATAGCGCTGAAGTGGAAA+TGG 0.425193 5_3:+9108849 Msa0797010:CDS
TTGTGCTTCGTTGGACCTCC+TGG 0.426293 5_3:+9106535 Msa0797010:CDS
GCAGATCAGCAAGAAGTTCC+AGG 0.430208 5_3:-9106265 None:intergenic
ATACTAGCTGCACATCGATA+TGG 0.430794 5_3:+9110916 Msa0797010:CDS
ACCTCAAGCAAGGCTGAAGC+TGG 0.431242 5_3:-9107450 None:intergenic
TCTCTTCCATCAAACTTTGG+AGG 0.433652 5_3:-9109335 None:intergenic
CCCTGGGATATCTGTCGGGC+TGG 0.434416 5_3:+9109379 Msa0797010:CDS
CGGCTTCCCTGGTATATCTC+TGG 0.434487 5_3:-9108690 None:intergenic
TTCCTCCACCTCTCCTTGAC+AGG 0.440713 5_3:+9108034 Msa0797010:CDS
TCGTTGGACCTCCTGGTGTT+GGG 0.442977 5_3:+9106542 Msa0797010:CDS
ACTTCGAACACCGGCTTCCC+TGG 0.445682 5_3:-9108701 None:intergenic
ATAGCTTCATCAACAACAAA+TGG 0.448887 5_3:-9108931 None:intergenic
GGCCAGCAAAGAGCTTGAAC+TGG 0.452589 5_3:+9106298 Msa0797010:CDS
AAGGATGAGGCTGATATTAG+AGG 0.453432 5_3:+9106637 Msa0797010:CDS
CAGCTCAAATTGCACTAACA+TGG 0.457967 5_3:+9109507 Msa0797010:CDS
TGACTGGAGAGATGACTTTG+AGG 0.459709 5_3:+9110108 Msa0797010:CDS
ATGTTTAATAAAGGTATGTT+TGG 0.462414 5_3:+9111809 Msa0797010:three_prime_UTR
TAGAGAGACAACATTTGCTC+AGG 0.465094 5_3:-9111622 None:intergenic
TCTTTGCTGGCCTTCTGCCA+TGG 0.466010 5_3:-9106287 None:intergenic
TGATTCAATTATTGCGACAC+TGG 0.466263 5_3:+9111356 Msa0797010:three_prime_UTR
AACACAGGACCTCTTGCATC+TGG 0.473365 5_3:-9106514 None:intergenic
AACCATAGTGATCATTGTCC+AGG 0.474034 5_3:-9106343 None:intergenic
CTATGGTTGAGAAAGTGCTT+GGG 0.477055 5_3:+9108950 Msa0797010:CDS
AAGAGCAACTGATCTCAAAC+TGG 0.477594 5_3:+9109929 Msa0797010:CDS
CTTTATTAAACATTGCAATC+GGG 0.478044 5_3:-9111799 None:intergenic
ATTTGTTGTTGATGAAGCTA+TGG 0.479561 5_3:+9108933 Msa0797010:CDS
TGTGACTTTAGTCACAGCTT+TGG 0.480340 5_3:+9110043 Msa0797010:CDS
CCCTCTACTCCTTTGCTAAG+TGG 0.480905 5_3:-9108793 None:intergenic
AAGATGCAGCCTCAGCAACC+TGG 0.483411 5_3:+9106221 Msa0797010:exon
AACTCTAGAAACCACCGGAT+TGG 0.486513 5_3:+9111422 Msa0797010:three_prime_UTR
GTAACCCCTGGGATATCTGT+CGG 0.488188 5_3:+9109374 Msa0797010:CDS
CTTTGTAATACCCTCTTCCC+TGG 0.488604 5_3:+9111652 Msa0797010:three_prime_UTR
TGTTGGTGGTATCAAGGATA+AGG 0.493185 5_3:+9110145 Msa0797010:CDS
AACTTTGAGTGTTGTCTCCA+AGG 0.494499 5_3:-9111306 None:intergenic
CCTAAAGATGGGCCTTCAGC+TGG 0.495256 5_3:+9110020 Msa0797010:CDS
AGTTGTAACTGTATCCTTGA+AGG 0.495686 5_3:+9111325 Msa0797010:exon
GTTTGTGGAGGCTTCAACAA+TGG 0.498631 5_3:+9109430 Msa0797010:CDS
GTGGAGGCTTCAACAATGGT+AGG 0.500185 5_3:+9109434 Msa0797010:CDS
GCAGAACGTGTTGTAACCCC+TGG 0.503121 5_3:+9109362 Msa0797010:CDS
AAGAGCTGCACAGGAACGCC+TGG 0.505014 5_3:+9106325 Msa0797010:CDS
TCTTTAGGTACTGCACCTGC+AGG 0.506064 5_3:-9110005 None:intergenic
GCAGGTGCAGTACCTAAAGA+TGG 0.507102 5_3:+9110008 Msa0797010:CDS
TAACCCCTGGGATATCTGTC+GGG 0.507187 5_3:+9109375 Msa0797010:CDS
AAATTTGTGCGCATATCCCT+TGG 0.508116 5_3:+9106607 Msa0797010:CDS
TTAGCTCTTAAATGTGTACA+AGG 0.509617 5_3:+9111757 Msa0797010:three_prime_UTR
GAAACCCTTCCTAGTGTCCA+TGG 0.510355 5_3:-9111494 None:intergenic
ATGTCAGCTCCCTTCCAATC+CGG 0.512252 5_3:-9111436 None:intergenic
TCCAAATTGGCTAGCACCGA+TGG 0.513112 5_3:-9110994 None:intergenic
TGCTGATCTGCCATGGCAGA+AGG 0.514222 5_3:+9106277 Msa0797010:CDS
ACTACCTGTTGGTGGTATCA+AGG 0.514302 5_3:+9110139 Msa0797010:CDS
TGGTGGAGAAGTTCAGTTTG+TGG 0.514334 5_3:+9109415 Msa0797010:CDS
GACTGGAGAGATGACTTTGA+GGG 0.516889 5_3:+9110109 Msa0797010:CDS
ATGCCAGGGAGGCTTATAGA+TGG 0.518627 5_3:+9106685 Msa0797010:CDS
CAGAGATATACCAGGGAAGC+CGG 0.518842 5_3:+9108691 Msa0797010:CDS
GATTCAATTATTGCGACACT+GGG 0.521727 5_3:+9111357 Msa0797010:three_prime_UTR
GGCTTCAACAATGGTAGGGA+AGG 0.522275 5_3:+9109439 Msa0797010:CDS
TCACGGTTGTTGACACCCAT+TGG 0.523476 5_3:-9108880 None:intergenic
TGGAAGTCATTGAGCTTCCT+GGG 0.523618 5_3:+9108058 Msa0797010:CDS
GGTCCTGTGTTGTGCTTCGT+TGG 0.524155 5_3:+9106526 Msa0797010:CDS
AGATCTGATACCGCTATGAC+TGG 0.524335 5_3:+9110092 Msa0797010:CDS
TCACTGCAGCAGCACGAGCA+AGG 0.525399 5_3:-9108744 None:intergenic
GGTGAGCATTAATCTGTTGG+AGG 0.526627 5_3:+9109959 Msa0797010:CDS
AACTTCTTGCTGATCTGCCA+TGG 0.527979 5_3:+9106270 Msa0797010:CDS
CGCCTGGACAATGATCACTA+TGG 0.529644 5_3:+9106341 Msa0797010:CDS
CCTTTAAGTTCCTTTCAGGT+AGG 0.529882 5_3:-9110954 None:intergenic
TGAAAGGAACTTAAAGGACT+TGG 0.530014 5_3:+9110960 Msa0797010:CDS
TTATCCTTGATACCACCAAC+AGG 0.532012 5_3:-9110143 None:intergenic
AACCTGGGTATAGCAGTTCA+CGG 0.533035 5_3:+9106237 Msa0797010:CDS
AAATTAACATAAATGAGGCC+AGG 0.533717 5_3:-9111670 None:intergenic
ATAAATGAGGCCAGGGAAGA+GGG 0.534241 5_3:-9111662 None:intergenic
CTGGTCTGGACTTCTGTTGG+TGG 0.535024 5_3:+9109398 Msa0797010:CDS
GGGCTGGTCTGGACTTCTGT+TGG 0.535931 5_3:+9109395 Msa0797010:CDS
ACTTGTCGATAGCGCTGAAG+TGG 0.536354 5_3:+9108843 Msa0797010:CDS
CCTTTCCAAACTTCGAACAC+CGG 0.537037 5_3:-9108710 None:intergenic
TCAGGTTGAATAGGTACAGC+TGG 0.538639 5_3:-9111604 None:intergenic
ACTTTGAGTGTTGTCTCCAA+GGG 0.540729 5_3:-9111305 None:intergenic
TCCACCTCTCCTTGACAGGA+TGG 0.542029 5_3:+9108038 Msa0797010:CDS
TGAATACCTAGCCGTTCGTA+AGG 0.542078 5_3:+9106391 Msa0797010:CDS
TCCACTTAGCAAAGGAGTAG+AGG 0.545494 5_3:+9108792 Msa0797010:CDS
CTAGAAACCACCGGATTGGA+AGG 0.546177 5_3:+9111426 Msa0797010:three_prime_UTR
TGGTGTTGGGAAAACATCAT+TGG 0.548490 5_3:+9106555 Msa0797010:CDS
TGCGGTGAGCATTAATCTGT+TGG 0.551507 5_3:+9109956 Msa0797010:CDS
TCCAGCTTCAGCCTTGCTTG+AGG 0.556384 5_3:+9107449 Msa0797010:CDS
CCACTTAGCAAAGGAGTAGA+GGG 0.557449 5_3:+9108793 Msa0797010:CDS
CTGCTATACCCAGGTTGCTG+AGG 0.557666 5_3:-9106230 None:intergenic
AATTAACATAAATGAGGCCA+GGG 0.559635 5_3:-9111669 None:intergenic
CACTGCAGCAGCACGAGCAA+GGG 0.560400 5_3:-9108743 None:intergenic
ATACATATACATTTCCCTGC+AGG 0.560721 5_3:+9109990 Msa0797010:CDS
ACCAGCCCGACAGATATCCC+AGG 0.565995 5_3:-9109380 None:intergenic
AAGGGAGCACTTTAGCCAGT+TGG 0.566243 5_3:+9111776 Msa0797010:three_prime_UTR
AGTCCATCTATAAGCCTCCC+TGG 0.570350 5_3:-9106688 None:intergenic
TGGAGGCTTCAACAATGGTA+GGG 0.571399 5_3:+9109435 Msa0797010:CDS
CATATCCCTTGGTGGAGTCA+AGG 0.571591 5_3:+9106618 Msa0797010:CDS
TGGAGAAGTTCAGTTTGTGG+AGG 0.572206 5_3:+9109418 Msa0797010:CDS
AGGGGTCTAGTACTACCTGT+TGG 0.573314 5_3:+9110128 Msa0797010:CDS
ATCCTGTCAAGGAGAGGTGG+AGG 0.573725 5_3:-9108036 None:intergenic
CTAGATGAAATCGACAAGAC+AGG 0.573743 5_3:+9107408 Msa0797010:CDS
ATTACCTTGGATAGATCGAA+TGG 0.574554 5_3:-9107979 None:intergenic
ATTTCATCTAGCAACATGAC+GGG 0.574971 5_3:-9107396 None:intergenic
AGTGTACCACCATGGACACT+AGG 0.575646 5_3:+9111485 Msa0797010:three_prime_UTR
GGTCTAGTACTACCTGTTGG+TGG 0.575809 5_3:+9110131 Msa0797010:CDS
TGAGTTTCTTCAAATTCCGA+AGG 0.577098 5_3:+9108158 Msa0797010:CDS
ATCGGTGCTAGCCAATTTGG+AGG 0.578618 5_3:+9110996 Msa0797010:CDS
CAATGACTTCCATCCTGTCA+AGG 0.579001 5_3:-9108047 None:intergenic
AGATGCAGCCTCAGCAACCT+GGG 0.579158 5_3:+9106222 Msa0797010:exon
CCAAGAGTTCTGGACCAACA+TGG 0.579915 5_3:+9108126 Msa0797010:CDS
AGCTCAAATTGCACTAACAT+GGG 0.580754 5_3:+9109508 Msa0797010:CDS
TTTGTGCGCATATCCCTTGG+TGG 0.582171 5_3:+9106610 Msa0797010:CDS
TTGCATCTTACTGGACAGCT+TGG 0.582322 5_3:+9109467 Msa0797010:CDS
TCCATCCTGTCAAGGAGAGG+TGG 0.584298 5_3:-9108039 None:intergenic
TGATCTCAAACTGGCTGCTG+CGG 0.587312 5_3:+9109938 Msa0797010:CDS
CTCATCCTTGACTCCACCAA+GGG 0.587588 5_3:-9106623 None:intergenic
CAAGTAGTTCCACTTAGCAA+AGG 0.588005 5_3:+9108784 Msa0797010:CDS
ACCTGGGTATAGCAGTTCAC+GGG 0.592271 5_3:+9106238 Msa0797010:CDS
ACTGGACTTAAGAGCTGCAC+AGG 0.593331 5_3:+9106316 Msa0797010:CDS
CAGGTGCAGTACCTAAAGAT+GGG 0.595150 5_3:+9110009 Msa0797010:CDS
TACCACCATGGACACTAGGA+AGG 0.596686 5_3:+9111489 Msa0797010:three_prime_UTR
CTTGGTTGAAGTGCCACCAT+CGG 0.597442 5_3:+9110978 Msa0797010:CDS
GCTATGGTTGAGAAAGTGCT+TGG 0.600223 5_3:+9108949 Msa0797010:CDS
GTGAGCATTAATCTGTTGGA+GGG 0.600831 5_3:+9109960 Msa0797010:CDS
CCTTGGTGGAGTCAAGGATG+AGG 0.605860 5_3:+9106624 Msa0797010:CDS
GATACTGCTTGCGAAACGAA+TGG 0.605902 5_3:+9111248 Msa0797010:intron
TCAGCTCCCTTCCAATCCGG+TGG 0.613214 5_3:-9111433 None:intergenic
CCGGTGTTCGAAGTTTGGAA+AGG 0.614993 5_3:+9108710 Msa0797010:CDS
CAGGGAAGAGGGTATTACAA+AGG 0.616158 5_3:-9111651 None:intergenic
CCAGCCCGACAGATATCCCA+GGG 0.616231 5_3:-9109379 None:intergenic
AGAGAGTCATCCTACCTGAA+AGG 0.617338 5_3:+9110944 Msa0797010:CDS
TTGTTATCCAGAGATATACC+AGG 0.619097 5_3:+9108683 Msa0797010:CDS
GGACATAGGAGAACATACAT+TGG 0.619902 5_3:+9106658 Msa0797010:CDS
ACTAAAGTCACACCAGCTGA+AGG 0.622524 5_3:-9110032 None:intergenic
GATTTCATCTAGCAACATGA+CGG 0.626323 5_3:-9107397 None:intergenic
GAGGCTTATAGATGGACTGA+AGG 0.629475 5_3:+9106693 Msa0797010:CDS
ACCAAAACTCTAGAAACCAC+CGG 0.629632 5_3:+9111417 Msa0797010:three_prime_UTR
TGACAACCTTACGAACGGCT+AGG 0.630657 5_3:-9106397 None:intergenic
TGTTCCATTCGATCTATCCA+AGG 0.630979 5_3:+9107975 Msa0797010:CDS
GCTTCAACAATGGTAGGGAA+GGG 0.631208 5_3:+9109440 Msa0797010:CDS
CAGCTTAAGCCAGATGCAAG+AGG 0.633930 5_3:+9106505 Msa0797010:intron
GCCCGTGAACTGCTATACCC+AGG 0.634567 5_3:-9106239 None:intergenic
TTCATCAACAACAAATGGAG+AGG 0.635794 5_3:-9108926 None:intergenic
TGATCACTATGGTTTAGAGA+AGG 0.639775 5_3:+9106352 Msa0797010:CDS
GGTCCAACGAAGCACAACAC+AGG 0.641264 5_3:-9106529 None:intergenic
ACTTCCATCCTGTCAAGGAG+AGG 0.642275 5_3:-9108042 None:intergenic
AAATTGGCTAGCACCGATGG+TGG 0.642671 5_3:-9110991 None:intergenic
ACTCAGAACTCAATCCATGT+TGG 0.642681 5_3:-9108140 None:intergenic
AGGATCAAGAACCTCAAGCA+AGG 0.643676 5_3:-9107460 None:intergenic
TAGAAACCACCGGATTGGAA+GGG 0.644819 5_3:+9111427 Msa0797010:three_prime_UTR
CTTTAGGTACTGCACCTGCA+GGG 0.647269 5_3:-9110004 None:intergenic
GGTATTGACAACCTTACGAA+CGG 0.656181 5_3:-9106402 None:intergenic
CCTCATCCTTGACTCCACCA+AGG 0.656248 5_3:-9106624 None:intergenic
GAAATGGAAGTGATACCAAT+GGG 0.656339 5_3:+9108865 Msa0797010:CDS
GCAATAATTGAATCATAATG+GGG 0.658341 5_3:-9111348 None:intergenic
TATGGTTGAGAAAGTGCTTG+GGG 0.660924 5_3:+9108951 Msa0797010:CDS
CAGAACGTGTTGTAACCCCT+GGG 0.661803 5_3:+9109363 Msa0797010:CDS
CATACATTGGAAGCATGCCA+GGG 0.667086 5_3:+9106671 Msa0797010:CDS
TAAATGTGTTTGATATGTCA+CGG 0.669922 5_3:-9108897 None:intergenic
CATGATTGAGTGTACCACCA+TGG 0.671210 5_3:+9111477 Msa0797010:three_prime_UTR
AGGCTGATATTAGAGGACAT+AGG 0.672911 5_3:+9106644 Msa0797010:CDS
TAGCTCTTAAATGTGTACAA+GGG 0.676060 5_3:+9111758 Msa0797010:three_prime_UTR
ACTGGAGAGATGACTTTGAG+GGG 0.676799 5_3:+9110110 Msa0797010:CDS
ACCACCATGGACACTAGGAA+GGG 0.680613 5_3:+9111490 Msa0797010:three_prime_UTR
GTTTAGAGAAGGTCAAGCAG+CGG 0.681370 5_3:+9106363 Msa0797010:CDS
AAGACAGGTTCTGATGTTCG+CGG 0.690453 5_3:+9107423 Msa0797010:CDS
GGAAATGGAAGTGATACCAA+TGG 0.693833 5_3:+9108864 Msa0797010:CDS
ACTGCTTGCGAAACGAATGG+AGG 0.694617 5_3:+9111251 Msa0797010:CDS
GCTTCCTGGGTATACACCCG+AGG 0.706005 5_3:+9108071 Msa0797010:CDS
TGTTATCCAGAGATATACCA+GGG 0.708280 5_3:+9108684 Msa0797010:CDS
AGTCATCTCTCCAGTCATAG+CGG 0.711714 5_3:-9110102 None:intergenic
ACATTGGAAGCATGCCAGGG+AGG 0.721249 5_3:+9106674 Msa0797010:CDS
ACCCTTCCTAGTGTCCATGG+TGG 0.744517 5_3:-9111491 None:intergenic
ATTCAATTATTGCGACACTG+GGG 0.753732 5_3:+9111358 Msa0797010:three_prime_UTR
CAGCCCGACAGATATCCCAG+GGG 0.819859 5_3:-9109378 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAATTTATTGACATAAA+AGG + chr5_3:9108182-9108201 Msa0797010:intron 10.0%
!!! ATTACATTTTATAATATACA+AGG + chr5_3:9109275-9109294 Msa0797010:intron 10.0%
!! AAATAAAAATTAACAATCTT+CGG + chr5_3:9110833-9110852 Msa0797010:intron 10.0%
!! AATACTTACAAAAAAAATTA+TGG - chr5_3:9111568-9111587 None:intergenic 10.0%
!!! TTACTAGTAAACATTTTTTA+TGG + chr5_3:9107813-9107832 Msa0797010:intron 15.0%
!!! TTGTTTGTTTTATCATAAAA+AGG - chr5_3:9108271-9108290 None:intergenic 15.0%
!!! AATAATTTTCCAATATTATG+CGG - chr5_3:9108411-9108430 None:intergenic 15.0%
!!! AATTTATCAATTTTTTGGAT+GGG - chr5_3:9109037-9109056 None:intergenic 15.0%
!!! TAATTTATCAATTTTTTGGA+TGG - chr5_3:9109038-9109057 None:intergenic 15.0%
!! TAAATTCTATGAAAAATTGT+TGG + chr5_3:9109056-9109075 Msa0797010:intron 15.0%
!! TAATGAAATTACTTTACTAA+TGG - chr5_3:9110289-9110308 None:intergenic 15.0%
!!! CTAATACTATTTTAGAATTA+GGG - chr5_3:9110491-9110510 None:intergenic 15.0%
!!! TCTAATACTATTTTAGAATT+AGG - chr5_3:9110492-9110511 None:intergenic 15.0%
!! TTTGCAAATATAACTCAAAT+TGG - chr5_3:9106762-9106781 None:intergenic 20.0%
!! TTATATTTGCAAATGTTTGT+AGG + chr5_3:9106769-9106788 Msa0797010:intron 20.0%
!!! ATATTAGGTATTTCTGATTA+AGG + chr5_3:9106909-9106928 Msa0797010:intron 20.0%
!! TAATAACTGAACAAGAATTA+CGG - chr5_3:9106956-9106975 None:intergenic 20.0%
!!! TTGAATGTTTTATTTTGTTC+AGG - chr5_3:9107483-9107502 None:intergenic 20.0%
!! TGTAAAAAATAAACTAGTTC+TGG - chr5_3:9107884-9107903 None:intergenic 20.0%
!! TGTTTATTTATTGCAATAGA+AGG - chr5_3:9107918-9107937 None:intergenic 20.0%
!! GTCAATAAATTAAATACCTT+CGG - chr5_3:9108177-9108196 None:intergenic 20.0%
!! AACAATATTCTATTACTGAT+AGG + chr5_3:9108290-9108309 Msa0797010:intron 20.0%
!! ATTTATTGTTAAGTTTACCT+GGG + chr5_3:9108322-9108341 Msa0797010:intron 20.0%
!!! ATTTATCAATTTTTTGGATG+GGG - chr5_3:9109036-9109055 None:intergenic 20.0%
!!! ATTTTATAATATACAAGGTG+AGG + chr5_3:9109280-9109299 Msa0797010:intron 20.0%
!!! TAAGTTTTAGTCTCAAAAAA+TGG - chr5_3:9109730-9109749 None:intergenic 20.0%
!! ATTCAGTAGAAAGTTTATAT+TGG - chr5_3:9110193-9110212 None:intergenic 20.0%
!! AAAGTAATTTCATTATTGCA+CGG + chr5_3:9110294-9110313 Msa0797010:intron 20.0%
!! AATTGCTTATGATTAAAAAG+TGG + chr5_3:9110865-9110884 Msa0797010:intron 20.0%
!! GTAAAACAAAAAAATAAGCA+GGG - chr5_3:9111187-9111206 None:intergenic 20.0%
!! TATCTGTATATTCATTTCAT+TGG - chr5_3:9111232-9111251 None:intergenic 20.0%
!! TTACAAAAAAAATTATGGAG+TGG - chr5_3:9111563-9111582 None:intergenic 20.0%
!!! AAGTATTTTTCTTTTGCTTT+TGG + chr5_3:9111581-9111600 Msa0797010:three_prime_UTR 20.0%
!! GCAAAAAATTAACATAAATG+AGG - chr5_3:9111678-9111697 None:intergenic 20.0%
!!! TTAATTTTTTGCCATTTATG+TGG + chr5_3:9111686-9111705 Msa0797010:three_prime_UTR 20.0%
!!! ATGTTTAATAAAGGTATGTT+TGG + chr5_3:9111809-9111828 Msa0797010:three_prime_UTR 20.0%
!! TAGAAAATAGATGAAGAAAA+AGG + chr5_3:9111899-9111918 Msa0797010:three_prime_UTR 20.0%
! TAGAGTAGTAGATATTTACA+AGG - chr5_3:9106442-9106461 None:intergenic 25.0%
! AGCATATAACAAGAAAATGA+TGG - chr5_3:9106834-9106853 None:intergenic 25.0%
! AGAAATACCTAATATTCACT+AGG - chr5_3:9106904-9106923 None:intergenic 25.0%
! TCTTAATGAGAATTCATTGA+TGG - chr5_3:9107074-9107093 None:intergenic 25.0%
! TTCTCATTAAGAAAATGAGA+TGG + chr5_3:9107082-9107101 Msa0797010:intron 25.0%
! TCTCATTAAGAAAATGAGAT+GGG + chr5_3:9107083-9107102 Msa0797010:intron 25.0%
! GTTTCTTAATTATTCATTGC+CGG - chr5_3:9107131-9107150 None:intergenic 25.0%
! ACTGTTTCAAATTTCAATAG+AGG + chr5_3:9107169-9107188 Msa0797010:intron 25.0%
!! CTGCTTCTTTTTCTATATTT+AGG + chr5_3:9107251-9107270 Msa0797010:intron 25.0%
! AATTTATTAACTAAGACGAG+AGG - chr5_3:9107538-9107557 None:intergenic 25.0%
!! ATATCTCTTTGTTATGAAGA+TGG + chr5_3:9107574-9107593 Msa0797010:intron 25.0%
! GAGTAAAAATGCAATATAAC+TGG - chr5_3:9107637-9107656 None:intergenic 25.0%
! ACTGTGAAAAACAAATATGA+AGG - chr5_3:9107670-9107689 None:intergenic 25.0%
! AACAATGGATATATCAAGAT+AGG - chr5_3:9107858-9107877 None:intergenic 25.0%
! TGCAATAGAAGGAAAAAAAA+AGG - chr5_3:9107907-9107926 None:intergenic 25.0%
! GATTTATTGTTAAGTTTACC+TGG + chr5_3:9108321-9108340 Msa0797010:intron 25.0%
! CTAATGCTCAAATAACAAAA+TGG - chr5_3:9108456-9108475 None:intergenic 25.0%
!!! ATTGTGTTATTTTACCATCA+AGG - chr5_3:9108529-9108548 None:intergenic 25.0%
! AGAAAGAAATTCTGTTCTAT+AGG + chr5_3:9108619-9108638 Msa0797010:intron 25.0%
! GAAAGAAATTCTGTTCTATA+GGG + chr5_3:9108620-9108639 Msa0797010:intron 25.0%
! TAAATGTGTTTGATATGTCA+CGG - chr5_3:9108900-9108919 None:intergenic 25.0%
!!! TTTATCAATTTTTTGGATGG+GGG - chr5_3:9109035-9109054 None:intergenic 25.0%
! TTTGATGAAATCAACCAATT+AGG - chr5_3:9109310-9109329 None:intergenic 25.0%
! GAAACTTATTTAGATGTAGT+TGG - chr5_3:9109537-9109556 None:intergenic 25.0%
! ACTGTGAAAACTTGATTTAT+AGG + chr5_3:9109899-9109918 Msa0797010:intron 25.0%
!! GTATGTTTCTTGCATTTTTA+TGG + chr5_3:9110167-9110186 Msa0797010:intron 25.0%
! CTGAACATAAGTTTATAAGT+GGG + chr5_3:9110620-9110639 Msa0797010:intron 25.0%
! TGAACATAAGTTTATAAGTG+GGG + chr5_3:9110621-9110640 Msa0797010:intron 25.0%
! GTAAGTATTAGAATTTGAGT+TGG - chr5_3:9110692-9110711 None:intergenic 25.0%
!!! ATACGAATACTTTTTATACC+TGG + chr5_3:9110794-9110813 Msa0797010:intron 25.0%
!! ATTTATCACTATTTCTTGTC+CGG + chr5_3:9111121-9111140 Msa0797010:intron 25.0%
! AAACATTCTATTGTAAAGAC+CGG - chr5_3:9111143-9111162 None:intergenic 25.0%
! CGTAAAACAAAAAAATAAGC+AGG - chr5_3:9111188-9111207 None:intergenic 25.0%
! ATTTCATTGGTGAGTTATTA+GGG - chr5_3:9111219-9111238 None:intergenic 25.0%
! GCAATAATTGAATCATAATG+GGG - chr5_3:9111351-9111370 None:intergenic 25.0%
! CGCAATAATTGAATCATAAT+GGG - chr5_3:9111352-9111371 None:intergenic 25.0%
! TCGCAATAATTGAATCATAA+TGG - chr5_3:9111353-9111372 None:intergenic 25.0%
! CTTTATTAAACATTGCAATC+GGG - chr5_3:9111802-9111821 None:intergenic 25.0%
! CCTTTATTAAACATTGCAAT+CGG - chr5_3:9111803-9111822 None:intergenic 25.0%
AGTAGTAGATATTTACAAGG+AGG - chr5_3:9106439-9106458 None:intergenic 30.0%
ATTTGCAAATGTTTGTAGGA+AGG + chr5_3:9106773-9106792 Msa0797010:intron 30.0%
CTCATTAAGAAAATGAGATG+GGG + chr5_3:9107084-9107103 Msa0797010:intron 30.0%
TCATTAAGAAAATGAGATGG+GGG + chr5_3:9107085-9107104 Msa0797010:intron 30.0%
! GCATATGATTCTTTGTTTCT+AGG + chr5_3:9107273-9107292 Msa0797010:intron 30.0%
!! TATGATTCTTTGTTTCTAGG+AGG + chr5_3:9107276-9107295 Msa0797010:intron 30.0%
TTGTCAGGACTAAGAAAATT+AGG - chr5_3:9107311-9107330 None:intergenic 30.0%
! GAAAACATATTGAAGAGTAC+AGG - chr5_3:9107516-9107535 None:intergenic 30.0%
!! CTGGTGTCACAATAAAATTT+AGG - chr5_3:9107618-9107637 None:intergenic 30.0%
CTACACAAAAATATACTGCT+AGG - chr5_3:9107725-9107744 None:intergenic 30.0%
GATAACTTAAGGAACAACTA+TGG - chr5_3:9107943-9107962 None:intergenic 30.0%
TCAAATAGCTGGATAACTTA+AGG - chr5_3:9107954-9107973 None:intergenic 30.0%
! CAAGGTAATTTTTGTTGCTA+CGG + chr5_3:9107993-9108012 Msa0797010:CDS 30.0%
TCTTGGAATTAAATGCTTCA+TGG - chr5_3:9108112-9108131 None:intergenic 30.0%
TTACCTGGGTTTAAATGTAT+AGG + chr5_3:9108336-9108355 Msa0797010:intron 30.0%
GCTCAAATAACAAAATGGTT+TGG - chr5_3:9108451-9108470 None:intergenic 30.0%
TTCTTCTATATTGTCCTTGA+TGG + chr5_3:9108512-9108531 Msa0797010:intron 30.0%
! GCACATAAACTCTTTTATTC+AGG + chr5_3:9108586-9108605 Msa0797010:intron 30.0%
GTGACATATCAAACACATTT+AGG + chr5_3:9108899-9108918 Msa0797010:CDS 30.0%
ATAGCTTCATCAACAACAAA+TGG - chr5_3:9108934-9108953 None:intergenic 30.0%
!! ATTTGTTGTTGATGAAGCTA+TGG + chr5_3:9108933-9108952 Msa0797010:CDS 30.0%
AGGTAAAATGCGAAGTTATA+AGG - chr5_3:9109121-9109140 None:intergenic 30.0%
! TATAACTTCGCATTTTACCT+TGG + chr5_3:9109121-9109140 Msa0797010:intron 30.0%
! ATAACTTCGCATTTTACCTT+GGG + chr5_3:9109122-9109141 Msa0797010:intron 30.0%
AATGAAAATGTAATTGCCCA+AGG - chr5_3:9109141-9109160 None:intergenic 30.0%
ATGTAAGATCTCTTTCAAGA+TGG - chr5_3:9109237-9109256 None:intergenic 30.0%
CTTACATAAGCAATCTTCAA+TGG + chr5_3:9109250-9109269 Msa0797010:intron 30.0%
AGAACAACCATGATAAAAGT+GGG - chr5_3:9109562-9109581 None:intergenic 30.0%
AAGAACAACCATGATAAAAG+TGG - chr5_3:9109563-9109582 None:intergenic 30.0%
! GTAACACGAAACAAATTTTC+TGG - chr5_3:9109624-9109643 None:intergenic 30.0%
!! TTGTTTCGTGTTACTTGTAT+CGG + chr5_3:9109630-9109649 Msa0797010:intron 30.0%
ACATTTGTGCCAATGATAAT+TGG + chr5_3:9109773-9109792 Msa0797010:intron 30.0%
GTTAGTAGCAAATATGCAAT+TGG + chr5_3:9110235-9110254 Msa0797010:intron 30.0%
!!! GCAATTGGTTTTGCATTTTT+TGG + chr5_3:9110250-9110269 Msa0797010:intron 30.0%
!! CTTATGAATGGTGGATATTA+GGG + chr5_3:9110341-9110360 Msa0797010:intron 30.0%
CCACTTATAAACTTATGTTC+AGG - chr5_3:9110622-9110641 None:intergenic 30.0%
CCTGAACATAAGTTTATAAG+TGG + chr5_3:9110619-9110638 Msa0797010:intron 30.0%
! GTTTATTGTTTTCTTGCCAT+CGG - chr5_3:9110752-9110771 None:intergenic 30.0%
ATGGCAAGAAAACAATAAAC+CGG + chr5_3:9110752-9110771 Msa0797010:intron 30.0%
!! TATCAAGTACTGAATATGCT+CGG - chr5_3:9111065-9111084 None:intergenic 30.0%
CATATTCAGTACTTGATACT+AGG + chr5_3:9111067-9111086 Msa0797010:intron 30.0%
GATACTAGGTTAGACATATT+TGG + chr5_3:9111081-9111100 Msa0797010:intron 30.0%
!!! AGAATGTTTTGAAAACACAG+TGG + chr5_3:9111154-9111173 Msa0797010:intron 30.0%
CATTTCATTGGTGAGTTATT+AGG - chr5_3:9111220-9111239 None:intergenic 30.0%
CAAAAAAAATTATGGAGTGG+TGG - chr5_3:9111560-9111579 None:intergenic 30.0%
AATTAACATAAATGAGGCCA+GGG - chr5_3:9111672-9111691 None:intergenic 30.0%
AAATTAACATAAATGAGGCC+AGG - chr5_3:9111673-9111692 None:intergenic 30.0%
CAGTAAAATAGCCACATAAA+TGG - chr5_3:9111700-9111719 None:intergenic 30.0%
!! ACCATTATTTTTCACGAACA+AGG + chr5_3:9111727-9111746 Msa0797010:three_prime_UTR 30.0%
!! CCATTATTTTTCACGAACAA+GGG + chr5_3:9111728-9111747 Msa0797010:three_prime_UTR 30.0%
! TTAGCTCTTAAATGTGTACA+AGG + chr5_3:9111757-9111776 Msa0797010:three_prime_UTR 30.0%
TAGCTCTTAAATGTGTACAA+GGG + chr5_3:9111758-9111777 Msa0797010:three_prime_UTR 30.0%
CCGATTGCAATGTTTAATAA+AGG + chr5_3:9111800-9111819 Msa0797010:three_prime_UTR 30.0%
TGATCACTATGGTTTAGAGA+AGG + chr5_3:9106352-9106371 Msa0797010:CDS 35.0%
! TACAAGGAGGCATAGTAATA+GGG - chr5_3:9106426-9106445 None:intergenic 35.0%
! TTACAAGGAGGCATAGTAAT+AGG - chr5_3:9106427-9106446 None:intergenic 35.0%
!! GCTGTAGGTTTTATGATACA+TGG + chr5_3:9106804-9106823 Msa0797010:intron 35.0%
!! TTCACCATTTGTTGTTGTCT+CGG + chr5_3:9106855-9106874 Msa0797010:intron 35.0%
CGAAGAACCTAGTGAATATT+AGG + chr5_3:9106894-9106913 Msa0797010:intron 35.0%
AGGTACAAATGATAGATTCC+AGG + chr5_3:9106929-9106948 Msa0797010:intron 35.0%
TAGATTCTCTGTGTCATACT+TGG + chr5_3:9107022-9107041 Msa0797010:intron 35.0%
TAATTATTCATTGCCGGTGT+TGG - chr5_3:9107125-9107144 None:intergenic 35.0%
ATAACATGAGTTCTATGAGC+AGG + chr5_3:9107192-9107211 Msa0797010:intron 35.0%
AAACAAACAACGTCTTCAGA+AGG - chr5_3:9107231-9107250 None:intergenic 35.0%
ACATTGCAGAAATAGTTGTC+AGG - chr5_3:9107326-9107345 None:intergenic 35.0%
ATTTCATCTAGCAACATGAC+GGG - chr5_3:9107399-9107418 None:intergenic 35.0%
GATTTCATCTAGCAACATGA+CGG - chr5_3:9107400-9107419 None:intergenic 35.0%
CTAGTAAGATCAAGATTGCT+AGG - chr5_3:9107800-9107819 None:intergenic 35.0%
!! AACTAGTTCTGGTGAAACAA+TGG - chr5_3:9107873-9107892 None:intergenic 35.0%
GAATGGAACATTCAAATAGC+TGG - chr5_3:9107965-9107984 None:intergenic 35.0%
ATTACCTTGGATAGATCGAA+TGG - chr5_3:9107982-9108001 None:intergenic 35.0%
CGTAGCAACAAAAATTACCT+TGG - chr5_3:9107995-9108014 None:intergenic 35.0%
! TTTTTGTTGCTACGGCAAAT+AGG + chr5_3:9108001-9108020 Msa0797010:CDS 35.0%
! TTTTGTTGCTACGGCAAATA+GGG + chr5_3:9108002-9108021 Msa0797010:CDS 35.0%
GCATTTAATTCCAAGAGTTC+TGG + chr5_3:9108116-9108135 Msa0797010:CDS 35.0%
TGAGTTTCTTCAAATTCCGA+AGG + chr5_3:9108158-9108177 Msa0797010:CDS 35.0%
TAGCCTATACATTTAAACCC+AGG - chr5_3:9108342-9108361 None:intergenic 35.0%
! TTTTCCAATATTATGCGGAC+TGG - chr5_3:9108406-9108425 None:intergenic 35.0%
TTGTTATCCAGAGATATACC+AGG + chr5_3:9108683-9108702 Msa0797010:CDS 35.0%
TGTTATCCAGAGATATACCA+GGG + chr5_3:9108684-9108703 Msa0797010:CDS 35.0%
GAAATGGAAGTGATACCAAT+GGG + chr5_3:9108865-9108884 Msa0797010:CDS 35.0%
TTCATCAACAACAAATGGAG+AGG - chr5_3:9108929-9108948 None:intergenic 35.0%
TAACATGACATTGCATTCAC+AGG - chr5_3:9109174-9109193 None:intergenic 35.0%
GTTTCTCTTCCATCAAACTT+TGG - chr5_3:9109341-9109360 None:intergenic 35.0%
AGCTCAAATTGCACTAACAT+GGG + chr5_3:9109508-9109527 Msa0797010:CDS 35.0%
!! GTTTCAACCCACTTTTATCA+TGG + chr5_3:9109552-9109571 Msa0797010:intron 35.0%
! ACGAAACAAATTTTCTGGAC+AGG - chr5_3:9109619-9109638 None:intergenic 35.0%
!! TGTTTCGTGTTACTTGTATC+GGG + chr5_3:9109631-9109650 Msa0797010:intron 35.0%
AATAACCATGTGTATGTGCA+TGG + chr5_3:9109656-9109675 Msa0797010:intron 35.0%
TTGAGCTAGCCAATTATCAT+TGG - chr5_3:9109785-9109804 None:intergenic 35.0%
GTGAACATTTAACAGTGAGA+TGG - chr5_3:9109831-9109850 None:intergenic 35.0%
ATACATATACATTTCCCTGC+AGG + chr5_3:9109990-9110009 Msa0797010:CDS 35.0%
!! GCTTATGAATGGTGGATATT+AGG + chr5_3:9110340-9110359 Msa0797010:intron 35.0%
CTGAGCACAAGTTTATAAGT+GGG + chr5_3:9110416-9110435 Msa0797010:intron 35.0%
TGAGCACAAGTTTATAAGTG+GGG + chr5_3:9110417-9110436 Msa0797010:intron 35.0%
ATTCTATGCAAGATTCGTTC+AGG + chr5_3:9110511-9110530 Msa0797010:intron 35.0%
ATAGTGATCAGAGAGTTATC+CGG - chr5_3:9110774-9110793 None:intergenic 35.0%
TTGATGTATGCATTTAAGCC+AGG - chr5_3:9110815-9110834 None:intergenic 35.0%
! AAGTCCTTTAAGTTCCTTTC+AGG - chr5_3:9110961-9110980 None:intergenic 35.0%
TGAAAGGAACTTAAAGGACT+TGG + chr5_3:9110960-9110979 Msa0797010:CDS 35.0%
AACAGAGTTTACCTCCAAAT+TGG - chr5_3:9111010-9111029 None:intergenic 35.0%
! TTAGAACAAGCTTTTGACAG+TGG + chr5_3:9111279-9111298 Msa0797010:CDS 35.0%
! TAGAACAAGCTTTTGACAGT+GGG + chr5_3:9111280-9111299 Msa0797010:CDS 35.0%
AGTTGTAACTGTATCCTTGA+AGG + chr5_3:9111325-9111344 Msa0797010:exon 35.0%
TGATTCAATTATTGCGACAC+TGG + chr5_3:9111356-9111375 Msa0797010:three_prime_UTR 35.0%
GATTCAATTATTGCGACACT+GGG + chr5_3:9111357-9111376 Msa0797010:three_prime_UTR 35.0%
ATTCAATTATTGCGACACTG+GGG + chr5_3:9111358-9111377 Msa0797010:three_prime_UTR 35.0%
!!! TCTAGAGTTTTGGTTGATCA+CGG - chr5_3:9111411-9111430 None:intergenic 35.0%
!! AACATTTGCTCAGGTTGAAT+AGG - chr5_3:9111616-9111635 None:intergenic 35.0%
CCCTTGTTCGTGAAAAATAA+TGG - chr5_3:9111731-9111750 None:intergenic 35.0%
AACCATAGTGATCATTGTCC+AGG - chr5_3:9106346-9106365 None:intergenic 40.0%
!! GGTATTGACAACCTTACGAA+CGG - chr5_3:9106405-9106424 None:intergenic 40.0%
! AATGATGTTTTCCCAACACC+AGG - chr5_3:9106556-9106575 None:intergenic 40.0%
! TGGTGTTGGGAAAACATCAT+TGG + chr5_3:9106555-9106574 Msa0797010:CDS 40.0%
! GGGATATGCGCACAAATTTT+CGG - chr5_3:9106606-9106625 None:intergenic 40.0%
AAATTTGTGCGCATATCCCT+TGG + chr5_3:9106607-9106626 Msa0797010:CDS 40.0%
AAGGATGAGGCTGATATTAG+AGG + chr5_3:9106637-9106656 Msa0797010:CDS 40.0%
AGGCTGATATTAGAGGACAT+AGG + chr5_3:9106644-9106663 Msa0797010:CDS 40.0%
GGACATAGGAGAACATACAT+TGG + chr5_3:9106658-9106677 Msa0797010:CDS 40.0%
!! TGTTTGTAGGAAGGCATTAG+TGG + chr5_3:9106782-9106801 Msa0797010:intron 40.0%
CAAACCGAGACAACAACAAA+TGG - chr5_3:9106862-9106881 None:intergenic 40.0%
! TCTTTTGCAGCACAGTAGTA+CGG + chr5_3:9106988-9107007 Msa0797010:intron 40.0%
!! AGATGGGGGTGTTTAAACAT+GGG + chr5_3:9107099-9107118 Msa0797010:intron 40.0%
!! TTGTTTCTAGGAGGATTGTG+AGG + chr5_3:9107285-9107304 Msa0797010:intron 40.0%
CTAGATGAAATCGACAAGAC+AGG + chr5_3:9107408-9107427 Msa0797010:CDS 40.0%
! TGCATTTTTACTCGCAAGCT+CGG + chr5_3:9107644-9107663 Msa0797010:intron 40.0%
ATGCCTATGCTCATTTGCAT+GGG + chr5_3:9107752-9107771 Msa0797010:intron 40.0%
TGTTCCATTCGATCTATCCA+AGG + chr5_3:9107975-9107994 Msa0797010:CDS 40.0%
!! GCTATTTTGAGCTTTTCCTC+GGG - chr5_3:9108090-9108109 None:intergenic 40.0%
!! GGCTATTTTGAGCTTTTCCT+CGG - chr5_3:9108091-9108110 None:intergenic 40.0%
ACTCAGAACTCAATCCATGT+TGG - chr5_3:9108143-9108162 None:intergenic 40.0%
GATGCTACAATGGATAGCTA+TGG - chr5_3:9108376-9108395 None:intergenic 40.0%
TGGACAAAGAGATGCTACAA+TGG - chr5_3:9108386-9108405 None:intergenic 40.0%
TTGTCCAGTCCGCATAATAT+TGG + chr5_3:9108399-9108418 Msa0797010:intron 40.0%
!! AGTCTCTTTTTAGTAGACCC+TGG + chr5_3:9108477-9108496 Msa0797010:intron 40.0%
! CTGTTCTATAGGGCTTTAAC+TGG + chr5_3:9108630-9108649 Msa0797010:intron 40.0%
ACTGGAAACTTTGTTGATGC+AGG + chr5_3:9108648-9108667 Msa0797010:intron 40.0%
CAAGTAGTTCCACTTAGCAA+AGG + chr5_3:9108784-9108803 Msa0797010:CDS 40.0%
! ACAAGTCTGTTTTCCAGAAG+TGG - chr5_3:9108829-9108848 None:intergenic 40.0%
GGAAATGGAAGTGATACCAA+TGG + chr5_3:9108864-9108883 Msa0797010:CDS 40.0%
!! CTATGGTTGAGAAAGTGCTT+GGG + chr5_3:9108950-9108969 Msa0797010:CDS 40.0%
!! TATGGTTGAGAAAGTGCTTG+GGG + chr5_3:9108951-9108970 Msa0797010:CDS 40.0%
!!! TCAATTTTTTGGATGGGGGT+TGG - chr5_3:9109031-9109050 None:intergenic 40.0%
TCAAGATGGCTTCATACACA+AGG - chr5_3:9109223-9109242 None:intergenic 40.0%
TCTCTTCCATCAAACTTTGG+AGG - chr5_3:9109338-9109357 None:intergenic 40.0%
AAGGGTGAATTGCATCTTAC+TGG + chr5_3:9109458-9109477 Msa0797010:CDS 40.0%
CAGCTCAAATTGCACTAACA+TGG + chr5_3:9109507-9109526 Msa0797010:CDS 40.0%
CATGTAAGTGTGCAAAGTGT+AGG + chr5_3:9109690-9109709 Msa0797010:intron 40.0%
TGGCACAAATGTCATACAGA+TGG - chr5_3:9109765-9109784 None:intergenic 40.0%
AAGAGCAACTGATCTCAAAC+TGG + chr5_3:9109929-9109948 Msa0797010:CDS 40.0%
GTGAGCATTAATCTGTTGGA+GGG + chr5_3:9109960-9109979 Msa0797010:CDS 40.0%
TGTGACTTTAGTCACAGCTT+TGG + chr5_3:9110043-9110062 Msa0797010:CDS 40.0%
TTATCCTTGATACCACCAAC+AGG - chr5_3:9110146-9110165 None:intergenic 40.0%
!! TGTTGGTGGTATCAAGGATA+AGG + chr5_3:9110145-9110164 Msa0797010:CDS 40.0%
AGCACCTCAATGCTTATGAA+TGG + chr5_3:9110329-9110348 Msa0797010:intron 40.0%
ACCTCAATGCTTATGAATGG+TGG + chr5_3:9110332-9110351 Msa0797010:intron 40.0%
! TCCACCATTCATAAGCATTG+AGG - chr5_3:9110336-9110355 None:intergenic 40.0%
GTCACGCATTCAATGAGATA+TGG + chr5_3:9110392-9110411 Msa0797010:intron 40.0%
CCACTTATAAACTTGTGCTC+AGG - chr5_3:9110418-9110437 None:intergenic 40.0%
CCTGAGCACAAGTTTATAAG+TGG + chr5_3:9110415-9110434 Msa0797010:intron 40.0%
!! CCTTACAAGCCAGTTTTGTA+GGG + chr5_3:9110449-9110468 Msa0797010:intron 40.0%
TAACTCGATCCCTACAAAAC+TGG - chr5_3:9110461-9110480 None:intergenic 40.0%
!! AGTTTTGTAGGGATCGAGTT+AGG + chr5_3:9110460-9110479 Msa0797010:intron 40.0%
AACTTATGTTCAGGCCATAG+AGG - chr5_3:9110613-9110632 None:intergenic 40.0%
ACAATCATCACCTTACAAGC+TGG + chr5_3:9110644-9110663 Msa0797010:intron 40.0%
!!! ACCTTACAAGCTGGTTTTGT+AGG + chr5_3:9110653-9110672 Msa0797010:intron 40.0%
!!! CCTTACAAGCTGGTTTTGTA+GGG + chr5_3:9110654-9110673 Msa0797010:intron 40.0%
!!! CTTACAAGCTGGTTTTGTAG+GGG + chr5_3:9110655-9110674 Msa0797010:intron 40.0%
! GCACTAGTTAGCTTAGTGTA+GGG - chr5_3:9110724-9110743 None:intergenic 40.0%
! TGCACTAGTTAGCTTAGTGT+AGG - chr5_3:9110725-9110744 None:intergenic 40.0%
! TATTGTTTTCTTGCCATCGG+CGG - chr5_3:9110749-9110768 None:intergenic 40.0%
ATACTAGCTGCACATCGATA+TGG + chr5_3:9110916-9110935 Msa0797010:CDS 40.0%
! CCTTTAAGTTCCTTTCAGGT+AGG - chr5_3:9110957-9110976 None:intergenic 40.0%
CCTACCTGAAAGGAACTTAA+AGG + chr5_3:9110954-9110973 Msa0797010:CDS 40.0%
! ACTTTGAGTGTTGTCTCCAA+GGG - chr5_3:9111308-9111327 None:intergenic 40.0%
! AACTTTGAGTGTTGTCTCCA+AGG - chr5_3:9111309-9111328 None:intergenic 40.0%
! ACCAAAACTCTAGAAACCAC+CGG + chr5_3:9111417-9111436 Msa0797010:three_prime_UTR 40.0%
TAGAGAGACAACATTTGCTC+AGG - chr5_3:9111625-9111644 None:intergenic 40.0%
AACCTGGGTATAGCAGTTCA+CGG + chr5_3:9106237-9106256 Msa0797010:CDS 45.0%
AACTTCTTGCTGATCTGCCA+TGG + chr5_3:9106270-9106289 Msa0797010:CDS 45.0%
GTTTAGAGAAGGTCAAGCAG+CGG + chr5_3:9106363-9106382 Msa0797010:CDS 45.0%
TGAATACCTAGCCGTTCGTA+AGG + chr5_3:9106391-9106410 Msa0797010:CDS 45.0%
ATCTTCTATTGCTGCTGCTC+TGG + chr5_3:9106579-9106598 Msa0797010:CDS 45.0%
! ACATACATTGGAAGCATGCC+AGG + chr5_3:9106670-9106689 Msa0797010:CDS 45.0%
! CATACATTGGAAGCATGCCA+GGG + chr5_3:9106671-9106690 Msa0797010:CDS 45.0%
!! GAGGCTTATAGATGGACTGA+AGG + chr5_3:9106693-9106712 Msa0797010:CDS 45.0%
CTGAACAAGAATTACGGTCC+TGG - chr5_3:9106950-9106969 None:intergenic 45.0%
!! GAGATGGGGGTGTTTAAACA+TGG + chr5_3:9107098-9107117 Msa0797010:intron 45.0%
GTTTAAACATGGGCCAACAC+CGG + chr5_3:9107109-9107128 Msa0797010:intron 45.0%
! GTTCTATGAGCAGGTTGAGA+AGG + chr5_3:9107201-9107220 Msa0797010:intron 45.0%
! AAGACAGGTTCTGATGTTCG+CGG + chr5_3:9107423-9107442 Msa0797010:CDS 45.0%
AGGATCAAGAACCTCAAGCA+AGG - chr5_3:9107463-9107482 None:intergenic 45.0%
TGCAAATGAGCATAGGCATG+TGG - chr5_3:9107751-9107770 None:intergenic 45.0%
CATGCCTATGCTCATTTGCA+TGG + chr5_3:9107751-9107770 Msa0797010:intron 45.0%
CTTCCCATGCAAATGAGCAT+AGG - chr5_3:9107758-9107777 None:intergenic 45.0%
CAATGACTTCCATCCTGTCA+AGG - chr5_3:9108050-9108069 None:intergenic 45.0%
ATGGAAGTCATTGAGCTTCC+TGG + chr5_3:9108057-9108076 Msa0797010:CDS 45.0%
TGGAAGTCATTGAGCTTCCT+GGG + chr5_3:9108058-9108077 Msa0797010:CDS 45.0%
AACTTTGTTGATGCAGGCGA+TGG + chr5_3:9108654-9108673 Msa0797010:intron 45.0%
CCTTTCCAAACTTCGAACAC+CGG - chr5_3:9108713-9108732 None:intergenic 45.0%
TCCACTTAGCAAAGGAGTAG+AGG + chr5_3:9108792-9108811 Msa0797010:CDS 45.0%
CCACTTAGCAAAGGAGTAGA+GGG + chr5_3:9108793-9108812 Msa0797010:CDS 45.0%
!! GCTATGGTTGAGAAAGTGCT+TGG + chr5_3:9108949-9108968 Msa0797010:CDS 45.0%
! TTTTTGGATGGGGGTTGGAT+GGG - chr5_3:9109026-9109045 None:intergenic 45.0%
!!! TTTTTTGGATGGGGGTTGGA+TGG - chr5_3:9109027-9109046 None:intergenic 45.0%
CAAGGTGAGGAATGCCTAAT+TGG + chr5_3:9109293-9109312 Msa0797010:intron 45.0%
ATGCAGCCTCCAAAGTTTGA+TGG + chr5_3:9109329-9109348 Msa0797010:intron 45.0%
TGGTGGAGAAGTTCAGTTTG+TGG + chr5_3:9109415-9109434 Msa0797010:CDS 45.0%
TGGAGAAGTTCAGTTTGTGG+AGG + chr5_3:9109418-9109437 Msa0797010:CDS 45.0%
GTTTGTGGAGGCTTCAACAA+TGG + chr5_3:9109430-9109449 Msa0797010:CDS 45.0%
TGGAGGCTTCAACAATGGTA+GGG + chr5_3:9109435-9109454 Msa0797010:CDS 45.0%
GCTTCAACAATGGTAGGGAA+GGG + chr5_3:9109440-9109459 Msa0797010:CDS 45.0%
TTGCATCTTACTGGACAGCT+TGG + chr5_3:9109467-9109486 Msa0797010:CDS 45.0%
TGTGTCCATGCACATACACA+TGG - chr5_3:9109664-9109683 None:intergenic 45.0%
TGCGGTGAGCATTAATCTGT+TGG + chr5_3:9109956-9109975 Msa0797010:CDS 45.0%
GGTGAGCATTAATCTGTTGG+AGG + chr5_3:9109959-9109978 Msa0797010:CDS 45.0%
CAGGTGCAGTACCTAAAGAT+GGG + chr5_3:9110009-9110028 Msa0797010:CDS 45.0%
ACTAAAGTCACACCAGCTGA+AGG - chr5_3:9110035-9110054 None:intergenic 45.0%
AGATCTGATACCGCTATGAC+TGG + chr5_3:9110092-9110111 Msa0797010:CDS 45.0%
AGTCATCTCTCCAGTCATAG+CGG - chr5_3:9110105-9110124 None:intergenic 45.0%
TGACTGGAGAGATGACTTTG+AGG + chr5_3:9110108-9110127 Msa0797010:CDS 45.0%
GACTGGAGAGATGACTTTGA+GGG + chr5_3:9110109-9110128 Msa0797010:CDS 45.0%
ACTGGAGAGATGACTTTGAG+GGG + chr5_3:9110110-9110129 Msa0797010:CDS 45.0%
!! ACTACCTGTTGGTGGTATCA+AGG + chr5_3:9110139-9110158 Msa0797010:CDS 45.0%
! TGGTGGATATTAGGGCTTTC+TGG + chr5_3:9110349-9110368 Msa0797010:intron 45.0%
GGATATTAGGGCTTTCTGGA+TGG + chr5_3:9110353-9110372 Msa0797010:intron 45.0%
!! GCCTTACAAGCCAGTTTTGT+AGG + chr5_3:9110448-9110467 Msa0797010:intron 45.0%
!! CCCTACAAAACTGGCTTGTA+AGG - chr5_3:9110452-9110471 None:intergenic 45.0%
ATGTCCAGTCCTCTGTGTAA+GGG + chr5_3:9110573-9110592 Msa0797010:intron 45.0%
GGGGTTTAAAGAGTCCTCTA+TGG + chr5_3:9110596-9110615 Msa0797010:intron 45.0%
CCCTACAAAACCAGCTTGTA+AGG - chr5_3:9110657-9110676 None:intergenic 45.0%
!! GGTTTTGTAGGGGTTGAGTT+AGG + chr5_3:9110665-9110684 Msa0797010:intron 45.0%
TTAGCTTAGTGTAGGGAGAC+TGG - chr5_3:9110717-9110736 None:intergenic 45.0%
AGAGAGTCATCCTACCTGAA+AGG + chr5_3:9110944-9110963 Msa0797010:CDS 45.0%
GATACTGCTTGCGAAACGAA+TGG + chr5_3:9111248-9111267 Msa0797010:intron 45.0%
! GAATCATAATGGGGCCTTCA+AGG - chr5_3:9111342-9111361 None:intergenic 45.0%
!!! TCCGGTGGTTTCTAGAGTTT+TGG - chr5_3:9111421-9111440 None:intergenic 45.0%
! AACTCTAGAAACCACCGGAT+TGG + chr5_3:9111422-9111441 Msa0797010:three_prime_UTR 45.0%
! TAGAAACCACCGGATTGGAA+GGG + chr5_3:9111427-9111446 Msa0797010:three_prime_UTR 45.0%
CATGATTGAGTGTACCACCA+TGG + chr5_3:9111477-9111496 Msa0797010:three_prime_UTR 45.0%
!! TCAGGTTGAATAGGTACAGC+TGG - chr5_3:9111607-9111626 None:intergenic 45.0%
!! CAGGGAAGAGGGTATTACAA+AGG - chr5_3:9111654-9111673 None:intergenic 45.0%
CTTTGTAATACCCTCTTCCC+TGG + chr5_3:9111652-9111671 Msa0797010:three_prime_UTR 45.0%
ATAAATGAGGCCAGGGAAGA+GGG - chr5_3:9111665-9111684 None:intergenic 45.0%
!!! AATTTAATTTATCAATTTTT+TGG - chr5_3:9109042-9109061 None:intergenic 5.0%
ACCTGGGTATAGCAGTTCAC+GGG + chr5_3:9106238-9106257 Msa0797010:CDS 50.0%
GCAGATCAGCAAGAAGTTCC+AGG - chr5_3:9106268-9106287 None:intergenic 50.0%
GTCCAGTTCAAGCTCTTTGC+TGG - chr5_3:9106303-9106322 None:intergenic 50.0%
ACTGGACTTAAGAGCTGCAC+AGG + chr5_3:9106316-9106335 Msa0797010:CDS 50.0%
CGCCTGGACAATGATCACTA+TGG + chr5_3:9106341-9106360 Msa0797010:CDS 50.0%
TGACAACCTTACGAACGGCT+AGG - chr5_3:9106400-9106419 None:intergenic 50.0%
! GCATCTGGCTTAAGCTGTGA+TGG - chr5_3:9106502-9106521 None:intergenic 50.0%
CAGCTTAAGCCAGATGCAAG+AGG + chr5_3:9106505-9106524 Msa0797010:intron 50.0%
AACACAGGACCTCTTGCATC+TGG - chr5_3:9106517-9106536 None:intergenic 50.0%
! GATGTTTTCCCAACACCAGG+AGG - chr5_3:9106553-9106572 None:intergenic 50.0%
TTTGTGCGCATATCCCTTGG+TGG + chr5_3:9106610-9106629 Msa0797010:CDS 50.0%
CATATCCCTTGGTGGAGTCA+AGG + chr5_3:9106618-9106637 Msa0797010:CDS 50.0%
CTCATCCTTGACTCCACCAA+GGG - chr5_3:9106626-9106645 None:intergenic 50.0%
ATGCCAGGGAGGCTTATAGA+TGG + chr5_3:9106685-9106704 Msa0797010:CDS 50.0%
AGTCCATCTATAAGCCTCCC+TGG - chr5_3:9106691-9106710 None:intergenic 50.0%
!! AGGAAGGCATTAGTGGCTGT+AGG + chr5_3:9106789-9106808 Msa0797010:intron 50.0%
TCAAGGAGAGGTGGAGGAAT+AGG - chr5_3:9108033-9108052 None:intergenic 50.0%
ACTTCCATCCTGTCAAGGAG+AGG - chr5_3:9108045-9108064 None:intergenic 50.0%
! TTTTCCTCGGGTGTATACCC+AGG - chr5_3:9108078-9108097 None:intergenic 50.0%
CCATGTTGGTCCAGAACTCT+TGG - chr5_3:9108129-9108148 None:intergenic 50.0%
!! CCAAGAGTTCTGGACCAACA+TGG + chr5_3:9108126-9108145 Msa0797010:CDS 50.0%
! AAGAAGAGAGCACAGCACCA+GGG - chr5_3:9108497-9108516 None:intergenic 50.0%
CAGAGATATACCAGGGAAGC+CGG + chr5_3:9108691-9108710 Msa0797010:CDS 50.0%
CCGGTGTTCGAAGTTTGGAA+AGG + chr5_3:9108710-9108729 Msa0797010:CDS 50.0%
CCCTCTACTCCTTTGCTAAG+TGG - chr5_3:9108796-9108815 None:intergenic 50.0%
GGGACTTACTACACCACTTC+TGG + chr5_3:9108813-9108832 Msa0797010:CDS 50.0%
! ACTTGTCGATAGCGCTGAAG+TGG + chr5_3:9108843-9108862 Msa0797010:CDS 50.0%
! CGATAGCGCTGAAGTGGAAA+TGG + chr5_3:9108849-9108868 Msa0797010:CDS 50.0%
TCACGGTTGTTGACACCCAT+TGG - chr5_3:9108883-9108902 None:intergenic 50.0%
CTGTAGATCCCAGTTGCTGA+CGG - chr5_3:9109086-9109105 None:intergenic 50.0%
CAGAACGTGTTGTAACCCCT+GGG + chr5_3:9109363-9109382 Msa0797010:CDS 50.0%
GTAACCCCTGGGATATCTGT+CGG + chr5_3:9109374-9109393 Msa0797010:CDS 50.0%
TAACCCCTGGGATATCTGTC+GGG + chr5_3:9109375-9109394 Msa0797010:CDS 50.0%
GTGGAGGCTTCAACAATGGT+AGG + chr5_3:9109434-9109453 Msa0797010:CDS 50.0%
GGCTTCAACAATGGTAGGGA+AGG + chr5_3:9109439-9109458 Msa0797010:CDS 50.0%
TGATCTCAAACTGGCTGCTG+CGG + chr5_3:9109938-9109957 Msa0797010:CDS 50.0%
! CTTTAGGTACTGCACCTGCA+GGG - chr5_3:9110007-9110026 None:intergenic 50.0%
! TCTTTAGGTACTGCACCTGC+AGG - chr5_3:9110008-9110027 None:intergenic 50.0%
GCAGGTGCAGTACCTAAAGA+TGG + chr5_3:9110008-9110027 Msa0797010:CDS 50.0%
AGGGGTCTAGTACTACCTGT+TGG + chr5_3:9110128-9110147 Msa0797010:CDS 50.0%
GGTCTAGTACTACCTGTTGG+TGG + chr5_3:9110131-9110150 Msa0797010:CDS 50.0%
AATAGCTGGGACCTGATAGC+AGG - chr5_3:9110539-9110558 None:intergenic 50.0%
GCTATCAGGTCCCAGCTATT+AGG + chr5_3:9110539-9110558 Msa0797010:intron 50.0%
CGGAGCATGACCTAATAGCT+GGG - chr5_3:9110552-9110571 None:intergenic 50.0%
CCAGCTATTAGGTCATGCTC+CGG + chr5_3:9110550-9110569 Msa0797010:intron 50.0%
TACACAGAGGACTGGACATC+CGG - chr5_3:9110572-9110591 None:intergenic 50.0%
GATGTCCAGTCCTCTGTGTA+AGG + chr5_3:9110572-9110591 Msa0797010:intron 50.0%
TGTCCAGTCCTCTGTGTAAG+GGG + chr5_3:9110574-9110593 Msa0797010:intron 50.0%
TTAAACCCCCCCTTACACAG+AGG - chr5_3:9110585-9110604 None:intergenic 50.0%
! CTTGGTTGAAGTGCCACCAT+CGG + chr5_3:9110978-9110997 Msa0797010:CDS 50.0%
!! AAATTGGCTAGCACCGATGG+TGG - chr5_3:9110994-9111013 None:intergenic 50.0%
!! ACCATCGGTGCTAGCCAATT+TGG + chr5_3:9110993-9111012 Msa0797010:CDS 50.0%
! TCCAAATTGGCTAGCACCGA+TGG - chr5_3:9110997-9111016 None:intergenic 50.0%
!! ATCGGTGCTAGCCAATTTGG+AGG + chr5_3:9110996-9111015 Msa0797010:CDS 50.0%
ACTGCTTGCGAAACGAATGG+AGG + chr5_3:9111251-9111270 Msa0797010:CDS 50.0%
! CTAGAAACCACCGGATTGGA+AGG + chr5_3:9111426-9111445 Msa0797010:three_prime_UTR 50.0%
ATGTCAGCTCCCTTCCAATC+CGG - chr5_3:9111439-9111458 None:intergenic 50.0%
AGTGTACCACCATGGACACT+AGG + chr5_3:9111485-9111504 Msa0797010:three_prime_UTR 50.0%
TACCACCATGGACACTAGGA+AGG + chr5_3:9111489-9111508 Msa0797010:three_prime_UTR 50.0%
ACCACCATGGACACTAGGAA+GGG + chr5_3:9111490-9111509 Msa0797010:three_prime_UTR 50.0%
GAAACCCTTCCTAGTGTCCA+TGG - chr5_3:9111497-9111516 None:intergenic 50.0%
TGGACACTAGGAAGGGTTTC+AGG + chr5_3:9111497-9111516 Msa0797010:three_prime_UTR 50.0%
CATAAATGAGGCCAGGGAAG+AGG - chr5_3:9111666-9111685 None:intergenic 50.0%
!! AAGGGAGCACTTTAGCCAGT+TGG + chr5_3:9111776-9111795 Msa0797010:three_prime_UTR 50.0%
AACATTGCAATCGGGCCAAC+TGG - chr5_3:9111794-9111813 None:intergenic 50.0%
AAGATGCAGCCTCAGCAACC+TGG + chr5_3:9106221-9106240 Msa0797010:exon 55.0%
AGATGCAGCCTCAGCAACCT+GGG + chr5_3:9106222-9106241 Msa0797010:exon 55.0%
CTGCTATACCCAGGTTGCTG+AGG - chr5_3:9106233-9106252 None:intergenic 55.0%
TAGCAGTTCACGGGCTTACC+TGG + chr5_3:9106247-9106266 Msa0797010:CDS 55.0%
TGCTGATCTGCCATGGCAGA+AGG + chr5_3:9106277-9106296 Msa0797010:CDS 55.0%
!! TCTTTGCTGGCCTTCTGCCA+TGG - chr5_3:9106290-9106309 None:intergenic 55.0%
GGCCAGCAAAGAGCTTGAAC+TGG + chr5_3:9106298-9106317 Msa0797010:CDS 55.0%
GGTCCTGTGTTGTGCTTCGT+TGG + chr5_3:9106526-9106545 Msa0797010:CDS 55.0%
GGTCCAACGAAGCACAACAC+AGG - chr5_3:9106532-9106551 None:intergenic 55.0%
TTGTGCTTCGTTGGACCTCC+TGG + chr5_3:9106535-9106554 Msa0797010:CDS 55.0%
TTCGTTGGACCTCCTGGTGT+TGG + chr5_3:9106541-9106560 Msa0797010:CDS 55.0%
TCGTTGGACCTCCTGGTGTT+GGG + chr5_3:9106542-9106561 Msa0797010:CDS 55.0%
CCTCATCCTTGACTCCACCA+AGG - chr5_3:9106627-9106646 None:intergenic 55.0%
CCTTGGTGGAGTCAAGGATG+AGG + chr5_3:9106624-9106643 Msa0797010:CDS 55.0%
! ACATTGGAAGCATGCCAGGG+AGG + chr5_3:9106674-9106693 Msa0797010:CDS 55.0%
TCCAGCTTCAGCCTTGCTTG+AGG + chr5_3:9107449-9107468 Msa0797010:CDS 55.0%
ACCTCAAGCAAGGCTGAAGC+TGG - chr5_3:9107453-9107472 None:intergenic 55.0%
TTCCTCCACCTCTCCTTGAC+AGG + chr5_3:9108034-9108053 Msa0797010:CDS 55.0%
ATCCTGTCAAGGAGAGGTGG+AGG - chr5_3:9108039-9108058 None:intergenic 55.0%
TCCACCTCTCCTTGACAGGA+TGG + chr5_3:9108038-9108057 Msa0797010:CDS 55.0%
TCCATCCTGTCAAGGAGAGG+TGG - chr5_3:9108042-9108061 None:intergenic 55.0%
! GAAGAAGAGAGCACAGCACC+AGG - chr5_3:9108498-9108517 None:intergenic 55.0%
CGGCTTCCCTGGTATATCTC+TGG - chr5_3:9108693-9108712 None:intergenic 55.0%
GGAAGCCGGTGTTCGAAGTT+TGG + chr5_3:9108705-9108724 Msa0797010:CDS 55.0%
AGATCCCAGTTGCTGACGGA+CGG - chr5_3:9109082-9109101 None:intergenic 55.0%
GCAGAACGTGTTGTAACCCC+TGG + chr5_3:9109362-9109381 Msa0797010:CDS 55.0%
CTGGTCTGGACTTCTGTTGG+TGG + chr5_3:9109398-9109417 Msa0797010:CDS 55.0%
CCAGCTGAAGGCCCATCTTT+AGG - chr5_3:9110023-9110042 None:intergenic 55.0%
CCTAAAGATGGGCCTTCAGC+TGG + chr5_3:9110020-9110039 Msa0797010:CDS 55.0%
TCGTTCAGGCACCTGCTATC+AGG + chr5_3:9110525-9110544 Msa0797010:intron 55.0%
CCGGAGCATGACCTAATAGC+TGG - chr5_3:9110553-9110572 None:intergenic 55.0%
GTCCAGTCCTCTGTGTAAGG+GGG + chr5_3:9110575-9110594 Msa0797010:intron 55.0%
TCCAGTCCTCTGTGTAAGGG+GGG + chr5_3:9110576-9110595 Msa0797010:intron 55.0%
CTAACTAGTGCAACCGCCGA+TGG + chr5_3:9110733-9110752 Msa0797010:intron 55.0%
! CTTTTGACAGTGGGTGCCCT+TGG + chr5_3:9111289-9111308 Msa0797010:CDS 55.0%
ACCCTTCCTAGTGTCCATGG+TGG - chr5_3:9111494-9111513 None:intergenic 55.0%
GCCCGTGAACTGCTATACCC+AGG - chr5_3:9106242-9106261 None:intergenic 60.0%
AAGAGCTGCACAGGAACGCC+TGG + chr5_3:9106325-9106344 Msa0797010:CDS 60.0%
GCTTCCTGGGTATACACCCG+AGG + chr5_3:9108071-9108090 Msa0797010:CDS 60.0%
!! ACTTCGAACACCGGCTTCCC+TGG - chr5_3:9108704-9108723 None:intergenic 60.0%
CACTGCAGCAGCACGAGCAA+GGG - chr5_3:9108746-9108765 None:intergenic 60.0%
TCACTGCAGCAGCACGAGCA+AGG - chr5_3:9108747-9108766 None:intergenic 60.0%
TTGGCCGTCCGTCAGCAACT+GGG + chr5_3:9109075-9109094 Msa0797010:intron 60.0%
CAGCCCGACAGATATCCCAG+GGG - chr5_3:9109381-9109400 None:intergenic 60.0%
CCAGCCCGACAGATATCCCA+GGG - chr5_3:9109382-9109401 None:intergenic 60.0%
ACCAGCCCGACAGATATCCC+AGG - chr5_3:9109383-9109402 None:intergenic 60.0%
!! GGATATCTGTCGGGCTGGTC+TGG + chr5_3:9109384-9109403 Msa0797010:CDS 60.0%
!! GGGCTGGTCTGGACTTCTGT+TGG + chr5_3:9109395-9109414 Msa0797010:CDS 60.0%
CCAGTCCTCTGTGTAAGGGG+GGG + chr5_3:9110577-9110596 Msa0797010:intron 60.0%
TCAGCTCCCTTCCAATCCGG+TGG - chr5_3:9111436-9111455 None:intergenic 60.0%
GTTGGCCGTCCGTCAGCAAC+TGG + chr5_3:9109074-9109093 Msa0797010:intron 65.0%
CCCTGGGATATCTGTCGGGC+TGG + chr5_3:9109379-9109398 Msa0797010:CDS 65.0%
CCCCCCCTTACACAGAGGAC+TGG - chr5_3:9110580-9110599 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 9106211 9111948 9106211 ID=Msa0797010;Name=Msa0797010
chr5_3 mRNA 9106211 9111948 9106211 ID=Msa0797010-mRNA-1;Parent=Msa0797010;Name=Msa0797010-mRNA-1;_AED=0.03;_eAED=0.04;_QI=13|1|0.88|1|0.75|0.88|9|616|556
chr5_3 exon 9106211 9106412 9106211 ID=Msa0797010-mRNA-1:exon:3874;Parent=Msa0797010-mRNA-1
chr5_3 exon 9106508 9106714 9106508 ID=Msa0797010-mRNA-1:exon:3875;Parent=Msa0797010-mRNA-1
chr5_3 exon 9107378 9107508 9107378 ID=Msa0797010-mRNA-1:exon:3876;Parent=Msa0797010-mRNA-1
chr5_3 exon 9107966 9108179 9107966 ID=Msa0797010-mRNA-1:exon:3877;Parent=Msa0797010-mRNA-1
chr5_3 exon 9108670 9108972 9108670 ID=Msa0797010-mRNA-1:exon:3878;Parent=Msa0797010-mRNA-1
chr5_3 exon 9109335 9109529 9109335 ID=Msa0797010-mRNA-1:exon:3879;Parent=Msa0797010-mRNA-1
chr5_3 exon 9109921 9110166 9109921 ID=Msa0797010-mRNA-1:exon:3880;Parent=Msa0797010-mRNA-1
chr5_3 exon 9110916 9111017 9110916 ID=Msa0797010-mRNA-1:exon:3881;Parent=Msa0797010-mRNA-1
chr5_3 exon 9111249 9111948 9111249 ID=Msa0797010-mRNA-1:exon:3882;Parent=Msa0797010-mRNA-1
chr5_3 five_prime_UTR 9106211 9106223 9106211 ID=Msa0797010-mRNA-1:five_prime_utr;Parent=Msa0797010-mRNA-1
chr5_3 CDS 9106224 9106412 9106224 ID=Msa0797010-mRNA-1:cds;Parent=Msa0797010-mRNA-1
chr5_3 CDS 9106508 9106714 9106508 ID=Msa0797010-mRNA-1:cds;Parent=Msa0797010-mRNA-1
chr5_3 CDS 9107378 9107508 9107378 ID=Msa0797010-mRNA-1:cds;Parent=Msa0797010-mRNA-1
chr5_3 CDS 9107966 9108179 9107966 ID=Msa0797010-mRNA-1:cds;Parent=Msa0797010-mRNA-1
chr5_3 CDS 9108670 9108972 9108670 ID=Msa0797010-mRNA-1:cds;Parent=Msa0797010-mRNA-1
chr5_3 CDS 9109335 9109529 9109335 ID=Msa0797010-mRNA-1:cds;Parent=Msa0797010-mRNA-1
chr5_3 CDS 9109921 9110166 9109921 ID=Msa0797010-mRNA-1:cds;Parent=Msa0797010-mRNA-1
chr5_3 CDS 9110916 9111017 9110916 ID=Msa0797010-mRNA-1:cds;Parent=Msa0797010-mRNA-1
chr5_3 CDS 9111249 9111332 9111249 ID=Msa0797010-mRNA-1:cds;Parent=Msa0797010-mRNA-1
chr5_3 three_prime_UTR 9111333 9111948 9111333 ID=Msa0797010-mRNA-1:three_prime_utr;Parent=Msa0797010-mRNA-1
Gene Sequence

>Msa0797010

ATGCAGCCTCAGCAACCTGGGTATAGCAGTTCACGGGCTTACCTGGAACTTCTTGCTGATCTGCCATGGCAGAAGGCCAGCAAAGAGCTTGAACTGGACTTAAGAGCTGCACAGGAACGCCTGGACAATGATCACTATGGTTTAGAGAAGGTCAAGCAGCGGATTATTGAATACCTAGCCGTTCGTAAGCTTAAGCCAGATGCAAGAGGTCCTGTGTTGTGCTTCGTTGGACCTCCTGGTGTTGGGAAAACATCATTGGCATCTTCTATTGCTGCTGCTCTGGACCGAAAATTTGTGCGCATATCCCTTGGTGGAGTCAAGGATGAGGCTGATATTAGAGGACATAGGAGAACATACATTGGAAGCATGCCAGGGAGGCTTATAGATGGACTGAAGAAAGTAGCTGTTTGCAATCCCGTCATGTTGCTAGATGAAATCGACAAGACAGGTTCTGATGTTCGCGGCGATCCAGCTTCAGCCTTGCTTGAGGTTCTTGATCCTGAACAAAATAAAACATTCAATGATCACTATTTGAATGTTCCATTCGATCTATCCAAGGTAATTTTTGTTGCTACGGCAAATAGGGCGCAACCTATTCCTCCACCTCTCCTTGACAGGATGGAAGTCATTGAGCTTCCTGGGTATACACCCGAGGAAAAGCTCAAAATAGCCATGAAGCATTTAATTCCAAGAGTTCTGGACCAACATGGATTGAGTTCTGAGTTTCTTCAAATTCCGAAGGCGATGGTGCAACTTGTTATCCAGAGATATACCAGGGAAGCCGGTGTTCGAAGTTTGGAAAGGAGTCTAGCTGCCCTTGCTCGTGCTGCTGCAGTGAGAATAGCAGAGCAAGAACAAGTAGTTCCACTTAGCAAAGGAGTAGAGGGACTTACTACACCACTTCTGGAAAACAGACTTGTCGATAGCGCTGAAGTGGAAATGGAAGTGATACCAATGGGTGTCAACAACCGTGACATATCAAACACATTTAGGATCACCTCTCCATTTGTTGTTGATGAAGCTATGGTTGAGAAAGTGCTTGGGCCTCCAAAGTTTGATGGAAGAGAAACAGCAGAACGTGTTGTAACCCCTGGGATATCTGTCGGGCTGGTCTGGACTTCTGTTGGTGGAGAAGTTCAGTTTGTGGAGGCTTCAACAATGGTAGGGAAGGGTGAATTGCATCTTACTGGACAGCTTGGTGATGTGATCAAAGAATCAGCTCAAATTGCACTAACATGGGTGAGAGCAAGAGCAACTGATCTCAAACTGGCTGCTGCGGTGAGCATTAATCTGTTGGAGGGTCGTGATATACATATACATTTCCCTGCAGGTGCAGTACCTAAAGATGGGCCTTCAGCTGGTGTGACTTTAGTCACAGCTTTGGTTTCACTTTTCAGTCAGAGAAAAGTGAGATCTGATACCGCTATGACTGGAGAGATGACTTTGAGGGGTCTAGTACTACCTGTTGGTGGTATCAAGGATAAGATACTAGCTGCACATCGATATGGTATTAAGAGAGTCATCCTACCTGAAAGGAACTTAAAGGACTTGGTTGAAGTGCCACCATCGGTGCTAGCCAATTTGGAGATACTGCTTGCGAAACGAATGGAGGATGTGTTAGAACAAGCTTTTGACAGTGGGTGCCCTTGGAGACAACACTCAAAGTTGTAA
Protein sequence

>Msa0797010

MQPQQPGYSSSRAYLELLADLPWQKASKELELDLRAAQERLDNDHYGLEKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALDRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKKVAVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRAQPIPPPLLDRMEVIELPGYTPEEKLKIAMKHLIPRVLDQHGLSSEFLQIPKAMVQLVIQRYTREAGVRSLERSLAALARAAAVRIAEQEQVVPLSKGVEGLTTPLLENRLVDSAEVEMEVIPMGVNNRDISNTFRITSPFVVDEAMVEKVLGPPKFDGRETAERVVTPGISVGLVWTSVGGEVQFVEASTMVGKGELHLTGQLGDVIKESAQIALTWVRARATDLKLAAAVSINLLEGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFSQRKVRSDTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPERNLKDLVEVPPSVLANLEILLAKRMEDVLEQAFDSGCPWRQHSKL*