Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0894940 | XP_024641201.1 | 97.436 | 390 | 10 | 0 | 1 | 390 | 1 | 390 | 0.0 | 795 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0894940 | sp|B0BN95|HARB1_RAT | 25.641 | 312 | 195 | 10 | 31 | 319 | 13 | 310 | 3.66e-16 | 82.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0894940 | A0A396HN24 | 97.436 | 390 | 10 | 0 | 1 | 390 | 1 | 390 | 0.0 | 795 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0672550 | Msa0894940 | 0.800219 | 1.597383e-48 | -8.615850e-47 |
| Msa0501450 | Msa0894940 | 0.803995 | 2.671114e-49 | -8.615850e-47 |
| Msa0894940 | Msa0932570 | 0.802049 | 6.745268e-49 | -8.615850e-47 |
| Msa0894940 | Msa0999100 | 0.804965 | 1.676456e-49 | -8.615850e-47 |
| Msa0894940 | Msa1023920 | 0.802690 | 4.976866e-49 | -8.615850e-47 |
| Msa0894940 | Msa1062920 | 0.805049 | 1.610094e-49 | -8.615850e-47 |
| Msa0894940 | Msa1107900 | 0.805950 | 1.041968e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0894940 | MtrunA17_Chr6g0478531 | 97.436 | 390 | 10 | 0 | 1 | 390 | 1 | 390 | 0.0 | 795 |
| Msa0894940 | MtrunA17_Chr6g0477141 | 46.524 | 374 | 180 | 7 | 15 | 384 | 116 | 473 | 5.22e-108 | 325 |
| Msa0894940 | MtrunA17_Chr7g0226311 | 39.828 | 349 | 186 | 5 | 38 | 383 | 9 | 336 | 2.64e-84 | 260 |
| Msa0894940 | MtrunA17_Chr1g0207391 | 40.379 | 369 | 208 | 4 | 13 | 380 | 63 | 420 | 3.11e-82 | 258 |
| Msa0894940 | MtrunA17_Chr1g0172731 | 37.401 | 377 | 221 | 5 | 7 | 377 | 34 | 401 | 1.45e-81 | 255 |
| Msa0894940 | MtrunA17_Chr8g0391981 | 41.176 | 323 | 185 | 3 | 15 | 336 | 53 | 371 | 3.39e-81 | 254 |
| Msa0894940 | MtrunA17_Chr1g0190171 | 36.870 | 377 | 223 | 5 | 7 | 377 | 34 | 401 | 2.71e-80 | 252 |
| Msa0894940 | MtrunA17_Chr1g0182341 | 35.967 | 367 | 189 | 6 | 27 | 381 | 49 | 381 | 3.37e-71 | 228 |
| Msa0894940 | MtrunA17_Chr8g0334561 | 39.648 | 227 | 125 | 5 | 7 | 223 | 34 | 258 | 4.83e-50 | 169 |
| Msa0894940 | MtrunA17_Chr2g0321401 | 38.496 | 226 | 129 | 4 | 7 | 223 | 33 | 257 | 9.37e-50 | 168 |
| Msa0894940 | MtrunA17_Chr2g0285471 | 38.624 | 189 | 107 | 3 | 43 | 223 | 2 | 189 | 2.25e-43 | 149 |
| Msa0894940 | MtrunA17_Chr7g0267201 | 36.646 | 161 | 92 | 1 | 45 | 195 | 1 | 161 | 1.13e-33 | 123 |
| Msa0894940 | MtrunA17_Chr4g0018411 | 34.337 | 166 | 86 | 5 | 220 | 383 | 9 | 153 | 7.18e-19 | 82.8 |
| Msa0894940 | MtrunA17_Chr1g0154421 | 34.167 | 120 | 75 | 2 | 22 | 138 | 31 | 149 | 2.30e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0894940 | AT5G41980.1 | 59.791 | 383 | 134 | 7 | 6 | 388 | 10 | 372 | 3.78e-161 | 457 |
| Msa0894940 | AT1G43722.1 | 38.039 | 255 | 148 | 3 | 39 | 283 | 66 | 320 | 4.40e-45 | 158 |
| Msa0894940 | AT5G28730.1 | 30.000 | 230 | 131 | 4 | 39 | 262 | 24 | 229 | 5.79e-27 | 109 |
| Msa0894940 | AT5G28950.1 | 55.172 | 87 | 38 | 1 | 132 | 217 | 12 | 98 | 2.33e-26 | 103 |
| Msa0894940 | AT5G35695.1 | 41.353 | 133 | 67 | 2 | 187 | 318 | 25 | 147 | 4.97e-25 | 102 |
| Msa0894940 | AT3G30525.1 | 36.076 | 158 | 95 | 2 | 149 | 300 | 1 | 158 | 2.87e-23 | 95.9 |
| Msa0894940 | AT4G10890.3 | 44.776 | 67 | 37 | 0 | 220 | 286 | 94 | 160 | 7.66e-11 | 63.9 |
| Msa0894940 | AT4G10890.1 | 44.776 | 67 | 37 | 0 | 220 | 286 | 94 | 160 | 7.66e-11 | 63.9 |
| Msa0894940 | AT4G10890.2 | 44.776 | 67 | 37 | 0 | 220 | 286 | 94 | 160 | 7.66e-11 | 63.9 |
Find 106 sgRNAs with CRISPR-Local
Find 297 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAAGCTGCGAGAACATTT+TGG | 0.207540 | 6_1:-81575163 | None:intergenic |
| AGGAGGAGGTGGACGGGATT+TGG | 0.219333 | 6_1:-81571594 | None:intergenic |
| AGTGTGACTGCTCGAACTTT+TGG | 0.284197 | 6_1:+81575856 | Msa0894940:CDS |
| CAAGAGATGTTTCATTATTC+CGG | 0.285116 | 6_1:+81571924 | Msa0894940:CDS |
| TGTGTCTCATCATTCGATTT+TGG | 0.288425 | 6_1:-81576081 | None:intergenic |
| GGATCTACTTCCACCTCTAT+TGG | 0.304592 | 6_1:-81576060 | None:intergenic |
| TTCTGTGGTTGGTAACCATT+AGG | 0.304827 | 6_1:-81575793 | None:intergenic |
| GCAATGAAACCTGGCACATT+TGG | 0.318908 | 6_1:-81575733 | None:intergenic |
| TGAGACACAAAACCAGTATC+AGG | 0.333326 | 6_1:+81576095 | Msa0894940:CDS |
| GGCATTGTGGAAATGGGAAT+TGG | 0.335805 | 6_1:-81571633 | None:intergenic |
| GGTCATAATTTGAGGATTAG+AGG | 0.338429 | 6_1:+81571897 | Msa0894940:CDS |
| TAAAATTTCTTTAAGTTCTC+AGG | 0.339904 | 6_1:+81576219 | Msa0894940:exon |
| GTTTATTACGCGACACGAAT+AGG | 0.344029 | 6_1:+81571832 | Msa0894940:CDS |
| TTGCACTCGCTTCACAGTTA+AGG | 0.346392 | 6_1:+81576142 | Msa0894940:CDS |
| TGATAAGGAGTACGAGGATA+TGG | 0.350960 | 6_1:-81575757 | None:intergenic |
| TGCACTCGCTTCACAGTTAA+GGG | 0.351325 | 6_1:+81576143 | Msa0894940:CDS |
| GGAGGAAGGCATTGTGGAAA+TGG | 0.361699 | 6_1:-81571640 | None:intergenic |
| GGAGGTTGATGATGAACGTT+GGG | 0.369465 | 6_1:-81571700 | None:intergenic |
| GCAAGGACCTTTCCGCAATA+AGG | 0.395352 | 6_1:+81575127 | Msa0894940:CDS |
| CACTCCAAGGAATTCCCTAA+TGG | 0.407026 | 6_1:+81575778 | Msa0894940:CDS |
| ACGGGATTTGGAGATGTTTG+TGG | 0.415712 | 6_1:-81571582 | None:intergenic |
| GCGGGGAGAAACCAGATGAT+TGG | 0.421554 | 6_1:+81575983 | Msa0894940:CDS |
| TTGAGTCCTTGAGTTATACT+TGG | 0.421908 | 6_1:+81576289 | Msa0894940:three_prime_UTR |
| CAAAACTAAGACCCTGATAC+TGG | 0.423528 | 6_1:-81576107 | None:intergenic |
| TTTCTTTAAGTTCTCAGGTC+AGG | 0.426967 | 6_1:+81576224 | Msa0894940:three_prime_UTR |
| AACTAGAAAGAATAGATTGC+AGG | 0.428810 | 6_1:+81575265 | Msa0894940:CDS |
| TTATTATTGGTCATAATTTG+AGG | 0.436884 | 6_1:+81571889 | Msa0894940:CDS |
| TGAAAGAGGAGGAGGTGGAC+GGG | 0.440811 | 6_1:-81571600 | None:intergenic |
| AGAATACGACTTTGTCCATT+CGG | 0.442854 | 6_1:-81571779 | None:intergenic |
| AAATACCCTACCTTAAAATA+CGG | 0.443774 | 6_1:-81572068 | None:intergenic |
| GGGAATTCCTTGGAGTGATA+AGG | 0.447281 | 6_1:-81575772 | None:intergenic |
| CATTACACAATTACATTCGC+GGG | 0.451520 | 6_1:+81575965 | Msa0894940:CDS |
| GAAGGAGCTGCCATCAATAT+AGG | 0.458390 | 6_1:-81575898 | None:intergenic |
| GCATTGTGGAAATGGGAATT+GGG | 0.459840 | 6_1:-81571632 | None:intergenic |
| AACAAATTTCCAAATGTGCC+AGG | 0.464661 | 6_1:+81575724 | Msa0894940:CDS |
| GTATAACTCAAGGACTCAAC+AGG | 0.465055 | 6_1:-81576285 | None:intergenic |
| GTTTGTGGTGGGTTCTTCGT+CGG | 0.470077 | 6_1:-81571661 | None:intergenic |
| TCTGTGGTTGGTAACCATTA+GGG | 0.470851 | 6_1:-81575792 | None:intergenic |
| TGGAGGTTGATGATGAACGT+TGG | 0.484648 | 6_1:-81571701 | None:intergenic |
| TTGGAGATGTTTGTGGTGGC+CGG | 0.485457 | 6_1:-81571575 | None:intergenic |
| GAAGATGAAAGAGGAGGAGG+TGG | 0.486467 | 6_1:-81571605 | None:intergenic |
| TGACACAGGTAAATATTACT+TGG | 0.488404 | 6_1:+81575696 | Msa0894940:intron |
| GGAGCGATTTCCTATATTGA+TGG | 0.489548 | 6_1:+81575888 | Msa0894940:CDS |
| GTAACCATTAGGGAATTCCT+TGG | 0.492014 | 6_1:-81575782 | None:intergenic |
| ATGAAAGAGGAGGAGGTGGA+CGG | 0.503648 | 6_1:-81571601 | None:intergenic |
| TATTCTTTAATAGGATTGTG+TGG | 0.507532 | 6_1:+81575058 | Msa0894940:intron |
| TTTGGTTTAGGGTTTGTGGT+GGG | 0.508048 | 6_1:-81571672 | None:intergenic |
| GATTGTGTGGGAGCAATTGA+TGG | 0.520336 | 6_1:+81575071 | Msa0894940:CDS |
| GAGGAAGGCATTGTGGAAAT+GGG | 0.522255 | 6_1:-81571639 | None:intergenic |
| GACCTTTCCGCAATAAGGAC+GGG | 0.527775 | 6_1:+81575132 | Msa0894940:CDS |
| ATTGAAGATGAAAGAGGAGG+AGG | 0.528134 | 6_1:-81571608 | None:intergenic |
| GTGGGTTCTTCGTCGGAGGA+AGG | 0.531571 | 6_1:-81571654 | None:intergenic |
| GTTCACATGCATTCTGTGGT+TGG | 0.538114 | 6_1:-81575804 | None:intergenic |
| CAATGATTGCGGAAGATGAG+AGG | 0.538321 | 6_1:+81572039 | Msa0894940:CDS |
| AATGTGGAACAAATTTATCC+AGG | 0.542227 | 6_1:+81576182 | Msa0894940:CDS |
| GGAATCACTGCCTCCAATAG+AGG | 0.542464 | 6_1:+81576047 | Msa0894940:CDS |
| CGTGTCGCGTAATAAACCCT+TGG | 0.546642 | 6_1:-81571826 | None:intergenic |
| ATTCTTTAATAGGATTGTGT+GGG | 0.546821 | 6_1:+81575059 | Msa0894940:intron |
| TGGTGGCCGGTGAGAAACTC+CGG | 0.552697 | 6_1:-81571562 | None:intergenic |
| GCATTACACAATTACATTCG+CGG | 0.565634 | 6_1:+81575964 | Msa0894940:CDS |
| TCTACTTCCACCTCTATTGG+AGG | 0.568061 | 6_1:-81576057 | None:intergenic |
| GGACCTTTCCGCAATAAGGA+CGG | 0.570686 | 6_1:+81575131 | Msa0894940:CDS |
| TTGTTTAGAAAATTTCCGAA+TGG | 0.578607 | 6_1:+81571764 | Msa0894940:CDS |
| GGATATGGAGCAATGAAACC+TGG | 0.578859 | 6_1:-81575742 | None:intergenic |
| GGATGTTGCTTCAATGATTG+CGG | 0.580099 | 6_1:+81572028 | Msa0894940:CDS |
| ATTGAAGCAACATCCTCCCC+TGG | 0.581098 | 6_1:-81572020 | None:intergenic |
| GGAATTGAAGATGAAAGAGG+AGG | 0.583710 | 6_1:-81571611 | None:intergenic |
| TGTGTCTGTAATGGGTATGA+AGG | 0.583903 | 6_1:-81575916 | None:intergenic |
| TTGGGAATTGAAGATGAAAG+AGG | 0.584256 | 6_1:-81571614 | None:intergenic |
| CTCTTTAGAAATCGACATAA+CGG | 0.587807 | 6_1:-81571985 | None:intergenic |
| ATGCCGACTAATCGTCTCAC+CGG | 0.588422 | 6_1:-81571943 | None:intergenic |
| ATCACTGCCTCCAATAGAGG+TGG | 0.599437 | 6_1:+81576050 | Msa0894940:CDS |
| ACCTCACCGGAAAACACCGC+CGG | 0.600995 | 6_1:+81571543 | Msa0894940:five_prime_UTR |
| AAAGGATGCATCATTTACAA+TGG | 0.601441 | 6_1:+81576023 | Msa0894940:CDS |
| TGTGGTGGGTTCTTCGTCGG+AGG | 0.602869 | 6_1:-81571658 | None:intergenic |
| AATAGATTGCAGGTTCCTGA+AGG | 0.605028 | 6_1:+81575275 | Msa0894940:CDS |
| TCCTTGCTCATCCACACCAA+CGG | 0.605626 | 6_1:-81575111 | None:intergenic |
| GGATGCATCATTTACAATGG+AGG | 0.606175 | 6_1:+81576026 | Msa0894940:CDS |
| CACTGTCCAAGTATAACTCA+AGG | 0.609553 | 6_1:-81576295 | None:intergenic |
| TCGTACTCCTTATCACTCCA+AGG | 0.609640 | 6_1:+81575765 | Msa0894940:CDS |
| ACGCAAAACCTAAACCTCAC+CGG | 0.611302 | 6_1:+81571530 | Msa0894940:five_prime_UTR |
| GGATTTGGAGATGTTTGTGG+TGG | 0.611416 | 6_1:-81571579 | None:intergenic |
| ATGTGATATTCTAGAAACCA+AGG | 0.612824 | 6_1:+81571809 | Msa0894940:CDS |
| CTAAAACATAACAAAACTTG+AGG | 0.615339 | 6_1:-81575193 | None:intergenic |
| CATGTGAACTGTTCAATCAA+CGG | 0.616264 | 6_1:+81575818 | Msa0894940:CDS |
| ACACCGCCGGAGTTTCTCAC+CGG | 0.616793 | 6_1:+81571556 | Msa0894940:five_prime_UTR |
| TCATCCACACCAACGGTCAC+AGG | 0.617070 | 6_1:-81575104 | None:intergenic |
| TCTCTGTTACAGCTGAAATG+TGG | 0.617542 | 6_1:+81576166 | Msa0894940:CDS |
| GACACAAGTAAAATTAGTAG+TGG | 0.621702 | 6_1:+81575933 | Msa0894940:CDS |
| AACCCGTCCTTATTGCGGAA+AGG | 0.628758 | 6_1:-81575134 | None:intergenic |
| GAGGTTGATGATGAACGTTG+GGG | 0.630021 | 6_1:-81571699 | None:intergenic |
| TGTACCTGTGACCGTTGGTG+TGG | 0.630272 | 6_1:+81575100 | Msa0894940:CDS |
| AACAGTTCACATGCATTCTG+TGG | 0.635462 | 6_1:-81575808 | None:intergenic |
| GAGACACAAAACCAGTATCA+GGG | 0.644420 | 6_1:+81576096 | Msa0894940:CDS |
| TGTGATATTCTAGAAACCAA+GGG | 0.645812 | 6_1:+81571810 | Msa0894940:CDS |
| TTCGTCGGAGGAAGGCATTG+TGG | 0.656159 | 6_1:-81571646 | None:intergenic |
| ACCGTTGGTGTGGATGAGCA+AGG | 0.659148 | 6_1:+81575110 | Msa0894940:CDS |
| ATTCCGGTGAGACGATTAGT+CGG | 0.662269 | 6_1:+81571940 | Msa0894940:CDS |
| AAAGTAACCCGTCCTTATTG+CGG | 0.672559 | 6_1:-81575139 | None:intergenic |
| TTCTTCGAAGAAGTACTCAA+CGG | 0.674621 | 6_1:+81571729 | Msa0894940:CDS |
| GAAGCAACATCCTCCCCTGG+AGG | 0.682682 | 6_1:-81572017 | None:intergenic |
| ATTACACAATTACATTCGCG+GGG | 0.689999 | 6_1:+81575966 | Msa0894940:CDS |
| ATATATGTACCTGTGACCGT+TGG | 0.695439 | 6_1:+81575095 | Msa0894940:CDS |
| AGGTTGATGATGAACGTTGG+GGG | 0.700735 | 6_1:-81571698 | None:intergenic |
| TTGGAGTGATAAGGAGTACG+AGG | 0.715740 | 6_1:-81575763 | None:intergenic |
| TGGCCGGTGAGAAACTCCGG+CGG | 0.729908 | 6_1:-81571559 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTGAGTAATT+AGG | + | chr6_1:81572227-81572246 | Msa0894940:intron | 10.0% |
| !!! | CTTTTTTATTATTCTTTAAT+AGG | + | chr6_1:81575049-81575068 | Msa0894940:intron | 10.0% |
| !!! | GCTATTTTTTTGTTTATTAT+TGG | + | chr6_1:81571876-81571895 | Msa0894940:CDS | 15.0% |
| !! | TAATTTAAACAAATTGCTAT+TGG | + | chr6_1:81574284-81574303 | Msa0894940:intron | 15.0% |
| !!! | TTTAAAAAAGTGTTATTGTT+CGG | - | chr6_1:81574722-81574741 | None:intergenic | 15.0% |
| !!! | AACTTAAAGAAATTTTACAT+GGG | - | chr6_1:81576216-81576235 | None:intergenic | 15.0% |
| !! | TTATTATTGGTCATAATTTG+AGG | + | chr6_1:81571889-81571908 | Msa0894940:CDS | 20.0% |
| !!! | ATTGGATATGATTGTTATTT+TGG | + | chr6_1:81572091-81572110 | Msa0894940:intron | 20.0% |
| !! | ATAAAATGTTGTCAAATAGT+GGG | - | chr6_1:81573480-81573499 | None:intergenic | 20.0% |
| !! | TATAAAATGTTGTCAAATAG+TGG | - | chr6_1:81573481-81573500 | None:intergenic | 20.0% |
| !! | TACAAAATGTTGTTAAATAG+TGG | + | chr6_1:81573582-81573601 | Msa0894940:intron | 20.0% |
| !! | TATCCAAGAACAATAAAAAA+GGG | - | chr6_1:81573684-81573703 | None:intergenic | 20.0% |
| !!! | AGAAATCTGACTTTAAAATA+TGG | - | chr6_1:81574458-81574477 | None:intergenic | 20.0% |
| !! | TGTAAAATGCAATTATGATT+TGG | + | chr6_1:81575311-81575330 | Msa0894940:intron | 20.0% |
| !!! | TACTTTTCAAACCAAATTAA+TGG | - | chr6_1:81575409-81575428 | None:intergenic | 20.0% |
| !!! | TGTTAAGTTTAAGATAGAAT+TGG | + | chr6_1:81575566-81575585 | Msa0894940:intron | 20.0% |
| !!! | GTTAAGTTTAAGATAGAATT+GGG | + | chr6_1:81575567-81575586 | Msa0894940:intron | 20.0% |
| !! | ACTTAAAACTCTTCAAATAT+TGG | + | chr6_1:81575656-81575675 | Msa0894940:intron | 20.0% |
| !!! | GATTTTTAAGATGTATGAAA+AGG | + | chr6_1:81576005-81576024 | Msa0894940:CDS | 20.0% |
| !!! | ACTTAAAGAAATTTTACATG+GGG | - | chr6_1:81576215-81576234 | None:intergenic | 20.0% |
| !!! | GAACTTAAAGAAATTTTACA+TGG | - | chr6_1:81576217-81576236 | None:intergenic | 20.0% |
| !!! | TAAAATTTCTTTAAGTTCTC+AGG | + | chr6_1:81576219-81576238 | Msa0894940:exon | 20.0% |
| !! | ACATTTCATCATAAAAACTT+GGG | + | chr6_1:81576369-81576388 | Msa0894940:three_prime_UTR | 20.0% |
| ! | TTGTTTAGAAAATTTCCGAA+TGG | + | chr6_1:81571764-81571783 | Msa0894940:CDS | 25.0% |
| !!! | TTTTTTCCGTATTTTAAGGT+AGG | + | chr6_1:81572062-81572081 | Msa0894940:intron | 25.0% |
| !!! | TTTTTCCGTATTTTAAGGTA+GGG | + | chr6_1:81572063-81572082 | Msa0894940:intron | 25.0% |
| ! | AAATACCCTACCTTAAAATA+CGG | - | chr6_1:81572071-81572090 | None:intergenic | 25.0% |
| !!! | TTTTAAGGTAGGGTATTTAT+TGG | + | chr6_1:81572073-81572092 | Msa0894940:intron | 25.0% |
| ! | AGAAATAGCAGTTTATTGTT+AGG | + | chr6_1:81572197-81572216 | Msa0894940:intron | 25.0% |
| ! | TATTTAGTACAAACCAATGT+AGG | + | chr6_1:81572610-81572629 | Msa0894940:intron | 25.0% |
| ! | ATTTAGTACAAACCAATGTA+GGG | + | chr6_1:81572611-81572630 | Msa0894940:intron | 25.0% |
| !! | TTAAATAGTTGAAAGTGTAG+TGG | + | chr6_1:81572678-81572697 | Msa0894940:intron | 25.0% |
| !! | TTATTAGGTTAGAGTACTAT+AGG | + | chr6_1:81572788-81572807 | Msa0894940:intron | 25.0% |
| !! | TATTAGGTTAGAGTACTATA+GGG | + | chr6_1:81572789-81572808 | Msa0894940:intron | 25.0% |
| ! | GTATCCAAGAACAATAAAAA+AGG | - | chr6_1:81573685-81573704 | None:intergenic | 25.0% |
| !!! | TAGAAAGTGTTGTTAAATAG+CGG | - | chr6_1:81574212-81574231 | None:intergenic | 25.0% |
| ! | TTAAATTGCATATCACTGAA+CGG | - | chr6_1:81574575-81574594 | None:intergenic | 25.0% |
| ! | TTAACATAGCGAAATTTGAA+CGG | - | chr6_1:81574831-81574850 | None:intergenic | 25.0% |
| ! | TATTCTTTAATAGGATTGTG+TGG | + | chr6_1:81575058-81575077 | Msa0894940:intron | 25.0% |
| ! | ATTCTTTAATAGGATTGTGT+GGG | + | chr6_1:81575059-81575078 | Msa0894940:intron | 25.0% |
| ! | CTAAAACATAACAAAACTTG+AGG | - | chr6_1:81575196-81575215 | None:intergenic | 25.0% |
| !!! | AAGTTTTGTTATGTTTTAGC+TGG | + | chr6_1:81575197-81575216 | Msa0894940:CDS | 25.0% |
| !! | ATTTTACTTGTGTCTGTAAT+GGG | - | chr6_1:81575927-81575946 | None:intergenic | 25.0% |
| !! | AATTTTACTTGTGTCTGTAA+TGG | - | chr6_1:81575928-81575947 | None:intergenic | 25.0% |
| ! | ATCTTAAAAATCCAATCATC+TGG | - | chr6_1:81575997-81576016 | None:intergenic | 25.0% |
| !! | CTTAAAGAAATTTTACATGG+GGG | - | chr6_1:81576214-81576233 | None:intergenic | 25.0% |
| ! | CACATTTCATCATAAAAACT+TGG | + | chr6_1:81576368-81576387 | Msa0894940:three_prime_UTR | 25.0% |
| ! | TACTTCTTCGAAGAATTTTG+TGG | - | chr6_1:81571724-81571743 | None:intergenic | 30.0% |
| !! | TTTTCTAAACAACGTTGGTT+TGG | - | chr6_1:81571756-81571775 | None:intergenic | 30.0% |
| ! | GGAAATTTTCTAAACAACGT+TGG | - | chr6_1:81571761-81571780 | None:intergenic | 30.0% |
| ! | ATGTGATATTCTAGAAACCA+AGG | + | chr6_1:81571809-81571828 | Msa0894940:CDS | 30.0% |
| ! | TGTGATATTCTAGAAACCAA+GGG | + | chr6_1:81571810-81571829 | Msa0894940:CDS | 30.0% |
| CAAGAGATGTTTCATTATTC+CGG | + | chr6_1:81571924-81571943 | Msa0894940:CDS | 30.0% | |
| ! | CTCTTTAGAAATCGACATAA+CGG | - | chr6_1:81571988-81572007 | None:intergenic | 30.0% |
| !!! | GAGGTTTTTTCCGTATTTTA+AGG | + | chr6_1:81572058-81572077 | Msa0894940:CDS | 30.0% |
| TTGTTCTGTGATACACTATT+TGG | + | chr6_1:81572384-81572403 | Msa0894940:intron | 30.0% | |
| TGTTGTCAATTGTGAATCAT+AGG | + | chr6_1:81572417-81572436 | Msa0894940:intron | 30.0% | |
| AGTTTGATATGCATGTTGTT+TGG | + | chr6_1:81572646-81572665 | Msa0894940:intron | 30.0% | |
| ! | GTTTGATATGCATGTTGTTT+GGG | + | chr6_1:81572647-81572666 | Msa0894940:intron | 30.0% |
| !! | GGAAATAGCAGTTTGTTATT+AGG | + | chr6_1:81572773-81572792 | Msa0894940:intron | 30.0% |
| AATTTCGACAAAACGCTATT+AGG | - | chr6_1:81572917-81572936 | None:intergenic | 30.0% | |
| !! | TTGTTTTGCGATACACTATT+TGG | + | chr6_1:81572982-81573001 | Msa0894940:intron | 30.0% |
| !! | AAAAATAGTGGATTGTGGTT+AGG | + | chr6_1:81573036-81573055 | Msa0894940:intron | 30.0% |
| AGTACAATAAATGCTTTAGC+TGG | + | chr6_1:81573063-81573082 | Msa0894940:intron | 30.0% | |
| TTTACAAATCGCTATTGTTC+TGG | + | chr6_1:81573136-81573155 | Msa0894940:intron | 30.0% | |
| TTACAAATCGCTATTGTTCT+GGG | + | chr6_1:81573137-81573156 | Msa0894940:intron | 30.0% | |
| ACTTTGTACTAAATCGTGTA+TGG | + | chr6_1:81573271-81573290 | Msa0894940:intron | 30.0% | |
| CGGTATTGTTCTAATATACA+CGG | - | chr6_1:81573509-81573528 | None:intergenic | 30.0% | |
| CGTGTATATTAGAACAATAC+CGG | + | chr6_1:81573507-81573526 | Msa0894940:intron | 30.0% | |
| ! | ATAGCAAACTTTTAACACAC+CGG | - | chr6_1:81573529-81573548 | None:intergenic | 30.0% |
| GTACCAATGTTGTCAAATAA+CGG | - | chr6_1:81573565-81573584 | None:intergenic | 30.0% | |
| TTGTTAAATAGTGGCTATAG+CGG | + | chr6_1:81573591-81573610 | Msa0894940:intron | 30.0% | |
| CTATCTTCAATTTACTACAC+TGG | + | chr6_1:81573655-81573674 | Msa0894940:intron | 30.0% | |
| !!! | TCTCCCTTTTTTATTGTTCT+TGG | + | chr6_1:81573678-81573697 | Msa0894940:intron | 30.0% |
| ! | TTATTAGGCTAGAGTACTAT+AGG | + | chr6_1:81573760-81573779 | Msa0894940:intron | 30.0% |
| ! | TATTAGGCTAGAGTACTATA+GGG | + | chr6_1:81573761-81573780 | Msa0894940:intron | 30.0% |
| !! | CAATATGTGATTTGGTACAA+AGG | - | chr6_1:81573810-81573829 | None:intergenic | 30.0% |
| TTTAACAACCTGCTATTGTT+CGG | - | chr6_1:81573833-81573852 | None:intergenic | 30.0% | |
| !!! | AATCGCTTTTGTTTTGTGAT+AGG | + | chr6_1:81573893-81573912 | Msa0894940:intron | 30.0% |
| !! | TTGTTTTGTGATAGGCTATT+TGG | + | chr6_1:81573901-81573920 | Msa0894940:intron | 30.0% |
| !! | TTCAAAGTGTTGTCAAATAG+CGG | - | chr6_1:81574006-81574025 | None:intergenic | 30.0% |
| !! | ATAGCGGTTTGTTAAAATTC+CGG | + | chr6_1:81574048-81574067 | Msa0894940:intron | 30.0% |
| TACACTATACTATAGCATAC+CGG | - | chr6_1:81574070-81574089 | None:intergenic | 30.0% | |
| TCCTGAATCATGAAAATTAG+AGG | + | chr6_1:81574345-81574364 | Msa0894940:intron | 30.0% | |
| ! | ATGCATGTTGTTTGAATGTT+TGG | + | chr6_1:81574493-81574512 | Msa0894940:intron | 30.0% |
| ! | TGCATGTTGTTTGAATGTTT+GGG | + | chr6_1:81574494-81574513 | Msa0894940:intron | 30.0% |
| TTGTGGTTTACAGAAAATAG+CGG | + | chr6_1:81574613-81574632 | Msa0894940:intron | 30.0% | |
| TAACATAGCGAAATTTGAAC+GGG | - | chr6_1:81574830-81574849 | None:intergenic | 30.0% | |
| !! | AGATACAAAGTGTTGTCAAA+TGG | - | chr6_1:81574866-81574885 | None:intergenic | 30.0% |
| !!! | CTCATTTTTTTCTGTGATCT+AGG | + | chr6_1:81575007-81575026 | Msa0894940:intron | 30.0% |
| AACTAGAAAGAATAGATTGC+AGG | + | chr6_1:81575265-81575284 | Msa0894940:CDS | 30.0% | |
| !! | CAGATAAAAGTATTACCTTC+AGG | - | chr6_1:81575293-81575312 | None:intergenic | 30.0% |
| !! | GATTTGGTTAGCAATTGTTT+TGG | + | chr6_1:81575327-81575346 | Msa0894940:intron | 30.0% |
| ! | TTCTGTCTTTTGCAAATGTT+GGG | + | chr6_1:81575352-81575371 | Msa0894940:intron | 30.0% |
| TTTGCGTATGTCCATTAATT+TGG | + | chr6_1:81575395-81575414 | Msa0894940:intron | 30.0% | |
| TTCACTGCAGTTAATACAAT+AGG | - | chr6_1:81575462-81575481 | None:intergenic | 30.0% | |
| ! | ACAGATTGATAGTTAGTAGA+TGG | + | chr6_1:81575507-81575526 | Msa0894940:intron | 30.0% |
| ! | ATAATAGCTGCAATCTTTTC+TGG | - | chr6_1:81575546-81575565 | None:intergenic | 30.0% |
| TGAAGCTTGATGCAAATTTA+AGG | + | chr6_1:81575615-81575634 | Msa0894940:intron | 30.0% | |
| GAAGCTTGATGCAAATTTAA+GGG | + | chr6_1:81575616-81575635 | Msa0894940:intron | 30.0% | |
| !! | AAAACGTTGTTTTATGACAC+AGG | + | chr6_1:81575682-81575701 | Msa0894940:intron | 30.0% |
| TGACACAGGTAAATATTACT+TGG | + | chr6_1:81575696-81575715 | Msa0894940:intron | 30.0% | |
| GACACAAGTAAAATTAGTAG+TGG | + | chr6_1:81575933-81575952 | Msa0894940:CDS | 30.0% | |
| AAAGGATGCATCATTTACAA+TGG | + | chr6_1:81576023-81576042 | Msa0894940:CDS | 30.0% | |
| AATGTGGAACAAATTTATCC+AGG | + | chr6_1:81576182-81576201 | Msa0894940:CDS | 30.0% | |
| TTGGGAATTGAAGATGAAAG+AGG | - | chr6_1:81571617-81571636 | None:intergenic | 35.0% | |
| ! | TTCTTCGAAGAATTTTGTGG+AGG | - | chr6_1:81571721-81571740 | None:intergenic | 35.0% |
| !! | TTCTTCGAAGAAGTACTCAA+CGG | + | chr6_1:81571729-81571748 | Msa0894940:CDS | 35.0% |
| AGAATACGACTTTGTCCATT+CGG | - | chr6_1:81571782-81571801 | None:intergenic | 35.0% | |
| GGTCATAATTTGAGGATTAG+AGG | + | chr6_1:81571897-81571916 | Msa0894940:CDS | 35.0% | |
| CTGCGATATGTTATCAATTG+TGG | + | chr6_1:81572168-81572187 | Msa0894940:intron | 35.0% | |
| !! | AGAGTTTTAACAAACCGCTA+TGG | - | chr6_1:81572531-81572550 | None:intergenic | 35.0% |
| CAAAGTAGTGTTGTCAATTG+TGG | + | chr6_1:81572744-81572763 | Msa0894940:intron | 35.0% | |
| TGTTGTCAATTGTGGATCAT+GGG | + | chr6_1:81572752-81572771 | Msa0894940:intron | 35.0% | |
| !! | TCACGAAAAATAGTGGATTG+TGG | + | chr6_1:81573031-81573050 | Msa0894940:intron | 35.0% |
| ATTGTGAATCACGCAAATTG+CGG | + | chr6_1:81573188-81573207 | Msa0894940:intron | 35.0% | |
| TGTTGTCAAATAGCGACTAT+AGG | - | chr6_1:81573252-81573271 | None:intergenic | 35.0% | |
| ! | TATTTTCCGTGATTCACGAT+TGG | - | chr6_1:81573409-81573428 | None:intergenic | 35.0% |
| !! | CTTATAGCATTTTAGCATGG+TGG | - | chr6_1:81573448-81573467 | None:intergenic | 35.0% |
| CACCATGCTAAAATGCTATA+AGG | + | chr6_1:81573446-81573465 | Msa0894940:intron | 35.0% | |
| CATGCTAAAATGCTATAAGG+CGG | + | chr6_1:81573449-81573468 | Msa0894940:intron | 35.0% | |
| TGTTGTCAAATAACGGCTAT+AGG | - | chr6_1:81573558-81573577 | None:intergenic | 35.0% | |
| TAGCCGTTATTTGACAACAT+TGG | + | chr6_1:81573559-81573578 | Msa0894940:intron | 35.0% | |
| TTGTTCTTGGATACTGTGTT+TGG | + | chr6_1:81573691-81573710 | Msa0894940:intron | 35.0% | |
| TTGGTACAAAGCAATGTTGT+CGG | + | chr6_1:81573710-81573729 | Msa0894940:intron | 35.0% | |
| TTGTTCGGCAATATGTGATT+TGG | - | chr6_1:81573818-81573837 | None:intergenic | 35.0% | |
| CAAATCAGTGTTGTCAATTG+TGG | + | chr6_1:81572409-81572428 | Msa0894940:intron | 35.0% | |
| ! | TATTGTCGATTGTGGATCTT+GGG | + | chr6_1:81574145-81574164 | Msa0894940:intron | 35.0% |
| ! | GCCTCTAATTTTCATGATTC+AGG | - | chr6_1:81574349-81574368 | None:intergenic | 35.0% |
| TCTCACTCAGTGTTTCAAAT+AGG | + | chr6_1:81574527-81574546 | Msa0894940:intron | 35.0% | |
| ACAAAACAGTGTTGTCATTG+TGG | + | chr6_1:81574596-81574615 | Msa0894940:intron | 35.0% | |
| !! | TATAAAGTGTTGTCAGACAG+TGG | - | chr6_1:81574684-81574703 | None:intergenic | 35.0% |
| TTCAACAAACCGCTATTGTT+CGG | - | chr6_1:81574902-81574921 | None:intergenic | 35.0% | |
| !!! | TTTGTTATGTTTTAGCTGGC+TGG | + | chr6_1:81575201-81575220 | Msa0894940:CDS | 35.0% |
| !!! | TTGTTATGTTTTAGCTGGCT+GGG | + | chr6_1:81575202-81575221 | Msa0894940:CDS | 35.0% |
| ! | GTTCTGTCTTTTGCAAATGT+TGG | + | chr6_1:81575351-81575370 | Msa0894940:intron | 35.0% |
| ! | TTTTGCAAATGTTGGGTTAC+TGG | + | chr6_1:81575359-81575378 | Msa0894940:intron | 35.0% |
| TTTGCAAATGTTGGGTTACT+GGG | + | chr6_1:81575360-81575379 | Msa0894940:intron | 35.0% | |
| AGTTAGTAGATGGTAAAGTC+AGG | + | chr6_1:81575517-81575536 | Msa0894940:intron | 35.0% | |
| AACAAATTTCCAAATGTGCC+AGG | + | chr6_1:81575724-81575743 | Msa0894940:CDS | 35.0% | |
| CATGTGAACTGTTCAATCAA+CGG | + | chr6_1:81575818-81575837 | Msa0894940:CDS | 35.0% | |
| GCATTACACAATTACATTCG+CGG | + | chr6_1:81575964-81575983 | Msa0894940:CDS | 35.0% | |
| CATTACACAATTACATTCGC+GGG | + | chr6_1:81575965-81575984 | Msa0894940:CDS | 35.0% | |
| ATTACACAATTACATTCGCG+GGG | + | chr6_1:81575966-81575985 | Msa0894940:CDS | 35.0% | |
| ! | TGTGTCTCATCATTCGATTT+TGG | - | chr6_1:81576084-81576103 | None:intergenic | 35.0% |
| ! | TTTCTTTAAGTTCTCAGGTC+AGG | + | chr6_1:81576224-81576243 | Msa0894940:three_prime_UTR | 35.0% |
| TTGAGTCCTTGAGTTATACT+TGG | + | chr6_1:81576289-81576308 | Msa0894940:three_prime_UTR | 35.0% | |
| !! | GAGGTTTAGGTTTTGCGTTT+TGG | - | chr6_1:81571528-81571547 | None:intergenic | 40.0% |
| ATTGAAGATGAAAGAGGAGG+AGG | - | chr6_1:81571611-81571630 | None:intergenic | 40.0% | |
| GGAATTGAAGATGAAAGAGG+AGG | - | chr6_1:81571614-81571633 | None:intergenic | 40.0% | |
| GCATTGTGGAAATGGGAATT+GGG | - | chr6_1:81571635-81571654 | None:intergenic | 40.0% | |
| ! | TTTGGTTTAGGGTTTGTGGT+GGG | - | chr6_1:81571675-81571694 | None:intergenic | 40.0% |
| !!! | TTTTGGTTTAGGGTTTGTGG+TGG | - | chr6_1:81571676-81571695 | None:intergenic | 40.0% |
| !!! | GTGTTTTGGTTTAGGGTTTG+TGG | - | chr6_1:81571679-81571698 | None:intergenic | 40.0% |
| GTTTATTACGCGACACGAAT+AGG | + | chr6_1:81571832-81571851 | Msa0894940:CDS | 40.0% | |
| !!! | AAAGAGTATTTTCAGCCTCC+AGG | + | chr6_1:81572002-81572021 | Msa0894940:CDS | 40.0% |
| !!! | AAGAGTATTTTCAGCCTCCA+GGG | + | chr6_1:81572003-81572022 | Msa0894940:CDS | 40.0% |
| ! | GGATGTTGCTTCAATGATTG+CGG | + | chr6_1:81572028-81572047 | Msa0894940:CDS | 40.0% |
| TACACAGTGTGGTCAAATAG+CGG | - | chr6_1:81572488-81572507 | None:intergenic | 40.0% | |
| ATGCGATTTAGTACACAGTG+TGG | - | chr6_1:81572499-81572518 | None:intergenic | 40.0% | |
| AACTAAGCAAAGCCCTACAT+TGG | - | chr6_1:81572626-81572645 | None:intergenic | 40.0% | |
| GTGTTGTCAATTGTGGATCA+TGG | + | chr6_1:81572751-81572770 | Msa0894940:intron | 40.0% | |
| TCGTGGATCACGAAAAATAG+TGG | + | chr6_1:81573024-81573043 | Msa0894940:intron | 40.0% | |
| ATGTTGCCAATCGTGAATCA+CGG | + | chr6_1:81573400-81573419 | Msa0894940:intron | 40.0% | |
| ! | AGCATGGTGGAATTTGAACA+AGG | - | chr6_1:81573435-81573454 | None:intergenic | 40.0% |
| !! | CGCCTTATAGCATTTTAGCA+TGG | - | chr6_1:81573451-81573470 | None:intergenic | 40.0% |
| TTGTGGAACACTGGAAATAG+CGG | + | chr6_1:81573733-81573752 | Msa0894940:intron | 40.0% | |
| ! | GGAAATAGCGGTGTGTTATT+AGG | + | chr6_1:81573745-81573764 | Msa0894940:intron | 40.0% |
| ACATATTGCCGAACAATAGC+AGG | + | chr6_1:81573822-81573841 | Msa0894940:intron | 40.0% | |
| GTGTTGTCAATTGTGGATCA+CGG | + | chr6_1:81572751-81572770 | Msa0894940:intron | 40.0% | |
| TGTTGTCAATTGTGGATCAC+GGG | + | chr6_1:81573934-81573953 | Msa0894940:intron | 40.0% | |
| ! | CAAAGCAGTATTGTCGATTG+TGG | + | chr6_1:81574137-81574156 | Msa0894940:intron | 40.0% |
| ! | GTATTGTCGATTGTGGATCT+TGG | + | chr6_1:81574144-81574163 | Msa0894940:intron | 40.0% |
| TTGTTCAAATTCTTCTGCGC+TGG | + | chr6_1:81574369-81574388 | Msa0894940:intron | 40.0% | |
| TGTTGTCAAATAGCGCCTAT+AGG | - | chr6_1:81574413-81574432 | None:intergenic | 40.0% | |
| CCTATGACACTTAAGCATAG+CGG | - | chr6_1:81574651-81574670 | None:intergenic | 40.0% | |
| CGCTATGCTTAAGTGTCATA+GGG | + | chr6_1:81574649-81574668 | Msa0894940:intron | 40.0% | |
| GCTATAGCACTATAGCATAG+CGG | - | chr6_1:81574748-81574767 | None:intergenic | 40.0% | |
| AGCGCGTTATTTGACAACAT+TGG | + | chr6_1:81574765-81574784 | Msa0894940:intron | 40.0% | |
| TGTGTATCTCCGAACAATAG+CGG | + | chr6_1:81574890-81574909 | Msa0894940:intron | 40.0% | |
| ATATATGTACCTGTGACCGT+TGG | + | chr6_1:81575095-81575114 | Msa0894940:CDS | 40.0% | |
| AAAGTAACCCGTCCTTATTG+CGG | - | chr6_1:81575142-81575161 | None:intergenic | 40.0% | |
| AATAGATTGCAGGTTCCTGA+AGG | + | chr6_1:81575275-81575294 | Msa0894940:CDS | 40.0% | |
| ! | TGATAAGGAGTACGAGGATA+TGG | - | chr6_1:81575760-81575779 | None:intergenic | 40.0% |
| GTAACCATTAGGGAATTCCT+TGG | - | chr6_1:81575785-81575804 | None:intergenic | 40.0% | |
| !! | TCTGTGGTTGGTAACCATTA+GGG | - | chr6_1:81575795-81575814 | None:intergenic | 40.0% |
| !! | TTCTGTGGTTGGTAACCATT+AGG | - | chr6_1:81575796-81575815 | None:intergenic | 40.0% |
| AACAGTTCACATGCATTCTG+TGG | - | chr6_1:81575811-81575830 | None:intergenic | 40.0% | |
| !!! | TCGAACTTTTGGGGCTTTAA+AGG | + | chr6_1:81575867-81575886 | Msa0894940:CDS | 40.0% |
| GGAGCGATTTCCTATATTGA+TGG | + | chr6_1:81575888-81575907 | Msa0894940:CDS | 40.0% | |
| !! | TGTGTCTGTAATGGGTATGA+AGG | - | chr6_1:81575919-81575938 | None:intergenic | 40.0% |
| GGATGCATCATTTACAATGG+AGG | + | chr6_1:81576026-81576045 | Msa0894940:CDS | 40.0% | |
| TGAGACACAAAACCAGTATC+AGG | + | chr6_1:81576095-81576114 | Msa0894940:CDS | 40.0% | |
| GAGACACAAAACCAGTATCA+GGG | + | chr6_1:81576096-81576115 | Msa0894940:CDS | 40.0% | |
| CAAAACTAAGACCCTGATAC+TGG | - | chr6_1:81576110-81576129 | None:intergenic | 40.0% | |
| TCTCTGTTACAGCTGAAATG+TGG | + | chr6_1:81576166-81576185 | Msa0894940:CDS | 40.0% | |
| TTTACATGGGGGAAATATCC+TGG | - | chr6_1:81576203-81576222 | None:intergenic | 40.0% | |
| !! | GTCAGGTTTGAAGTTTTCTC+AGG | + | chr6_1:81576241-81576260 | Msa0894940:three_prime_UTR | 40.0% |
| GTATAACTCAAGGACTCAAC+AGG | - | chr6_1:81576288-81576307 | None:intergenic | 40.0% | |
| CACTGTCCAAGTATAACTCA+AGG | - | chr6_1:81576298-81576317 | None:intergenic | 40.0% | |
| ACGCAAAACCTAAACCTCAC+CGG | + | chr6_1:81571530-81571549 | Msa0894940:five_prime_UTR | 45.0% | |
| GGATTTGGAGATGTTTGTGG+TGG | - | chr6_1:81571582-81571601 | None:intergenic | 45.0% | |
| ACGGGATTTGGAGATGTTTG+TGG | - | chr6_1:81571585-81571604 | None:intergenic | 45.0% | |
| GGCATTGTGGAAATGGGAAT+TGG | - | chr6_1:81571636-81571655 | None:intergenic | 45.0% | |
| !! | GAGGAAGGCATTGTGGAAAT+GGG | - | chr6_1:81571642-81571661 | None:intergenic | 45.0% |
| !!! | GTTGGGGGTGTTTTGGTTTA+GGG | - | chr6_1:81571686-81571705 | None:intergenic | 45.0% |
| !! | AGGTTGATGATGAACGTTGG+GGG | - | chr6_1:81571701-81571720 | None:intergenic | 45.0% |
| !! | GAGGTTGATGATGAACGTTG+GGG | - | chr6_1:81571702-81571721 | None:intergenic | 45.0% |
| !! | GGAGGTTGATGATGAACGTT+GGG | - | chr6_1:81571703-81571722 | None:intergenic | 45.0% |
| !! | TGGAGGTTGATGATGAACGT+TGG | - | chr6_1:81571704-81571723 | None:intergenic | 45.0% |
| ATTCCGGTGAGACGATTAGT+CGG | + | chr6_1:81571940-81571959 | Msa0894940:CDS | 45.0% | |
| !! | AGAGTATTTTCAGCCTCCAG+GGG | + | chr6_1:81572004-81572023 | Msa0894940:CDS | 45.0% |
| CAATGATTGCGGAAGATGAG+AGG | + | chr6_1:81572039-81572058 | Msa0894940:CDS | 45.0% | |
| AATCATAGGAAGTAGCGCCT+TGG | + | chr6_1:81572431-81572450 | Msa0894940:intron | 45.0% | |
| CGCATGTATCAGAACCATAG+CGG | + | chr6_1:81572514-81572533 | Msa0894940:intron | 45.0% | |
| CAAAGCAGTGTTGTCAATCG+TGG | + | chr6_1:81573007-81573026 | Msa0894940:intron | 45.0% | |
| GTTCAAATTCCGCTAGGCTA+AGG | + | chr6_1:81573214-81573233 | Msa0894940:intron | 45.0% | |
| ! | CAAAGCAATGTTGTCGGTTG+TGG | + | chr6_1:81573716-81573735 | Msa0894940:intron | 45.0% |
| TGCGTATCGCAGAACAATAG+CGG | + | chr6_1:81574032-81574051 | Msa0894940:intron | 45.0% | |
| CCGCTATGCTTAAGTGTCAT+AGG | + | chr6_1:81574648-81574667 | Msa0894940:intron | 45.0% | |
| GTGCTGTAGCATAACTCTAG+CGG | + | chr6_1:81574938-81574957 | Msa0894940:intron | 45.0% | |
| GATTGTGTGGGAGCAATTGA+TGG | + | chr6_1:81575071-81575090 | Msa0894940:CDS | 45.0% | |
| ! | GCAAGCTGCGAGAACATTTT+GGG | - | chr6_1:81575165-81575184 | None:intergenic | 45.0% |
| ! | AGCAAGCTGCGAGAACATTT+TGG | - | chr6_1:81575166-81575185 | None:intergenic | 45.0% |
| !!! | TATGTTTTAGCTGGCTGGGA+AGG | + | chr6_1:81575206-81575225 | Msa0894940:CDS | 45.0% |
| ATGTTGGGTTACTGGGTGTT+AGG | + | chr6_1:81575367-81575386 | Msa0894940:intron | 45.0% | |
| GCAATGAAACCTGGCACATT+TGG | - | chr6_1:81575736-81575755 | None:intergenic | 45.0% | |
| GGATATGGAGCAATGAAACC+TGG | - | chr6_1:81575745-81575764 | None:intergenic | 45.0% | |
| ! | TTGGAGTGATAAGGAGTACG+AGG | - | chr6_1:81575766-81575785 | None:intergenic | 45.0% |
| TCGTACTCCTTATCACTCCA+AGG | + | chr6_1:81575765-81575784 | Msa0894940:CDS | 45.0% | |
| GGGAATTCCTTGGAGTGATA+AGG | - | chr6_1:81575775-81575794 | None:intergenic | 45.0% | |
| CACTCCAAGGAATTCCCTAA+TGG | + | chr6_1:81575778-81575797 | Msa0894940:CDS | 45.0% | |
| GTTCACATGCATTCTGTGGT+TGG | - | chr6_1:81575807-81575826 | None:intergenic | 45.0% | |
| ! | AGTGTGACTGCTCGAACTTT+TGG | + | chr6_1:81575856-81575875 | Msa0894940:CDS | 45.0% |
| ! | GTGTGACTGCTCGAACTTTT+GGG | + | chr6_1:81575857-81575876 | Msa0894940:CDS | 45.0% |
| ! | TGTGACTGCTCGAACTTTTG+GGG | + | chr6_1:81575858-81575877 | Msa0894940:CDS | 45.0% |
| GAAGGAGCTGCCATCAATAT+AGG | - | chr6_1:81575901-81575920 | None:intergenic | 45.0% | |
| TCTACTTCCACCTCTATTGG+AGG | - | chr6_1:81576060-81576079 | None:intergenic | 45.0% | |
| GGATCTACTTCCACCTCTAT+TGG | - | chr6_1:81576063-81576082 | None:intergenic | 45.0% | |
| TTGCACTCGCTTCACAGTTA+AGG | + | chr6_1:81576142-81576161 | Msa0894940:CDS | 45.0% | |
| TGCACTCGCTTCACAGTTAA+GGG | + | chr6_1:81576143-81576162 | Msa0894940:CDS | 45.0% | |
| ! | GGTGTTTTCCGGTGAGGTTT+AGG | - | chr6_1:81571541-81571560 | None:intergenic | 50.0% |
| TTGGAGATGTTTGTGGTGGC+CGG | - | chr6_1:81571578-81571597 | None:intergenic | 50.0% | |
| ATGAAAGAGGAGGAGGTGGA+CGG | - | chr6_1:81571604-81571623 | None:intergenic | 50.0% | |
| GAAGATGAAAGAGGAGGAGG+TGG | - | chr6_1:81571608-81571627 | None:intergenic | 50.0% | |
| !! | GGAGGAAGGCATTGTGGAAA+TGG | - | chr6_1:81571643-81571662 | None:intergenic | 50.0% |
| !! | GTTTGTGGTGGGTTCTTCGT+CGG | - | chr6_1:81571664-81571683 | None:intergenic | 50.0% |
| !!! | CGTTGGGGGTGTTTTGGTTT+AGG | - | chr6_1:81571687-81571706 | None:intergenic | 50.0% |
| !!! | GATGAACGTTGGGGGTGTTT+TGG | - | chr6_1:81571693-81571712 | None:intergenic | 50.0% |
| CGTGTCGCGTAATAAACCCT+TGG | - | chr6_1:81571829-81571848 | None:intergenic | 50.0% | |
| ! | ATGCCGACTAATCGTCTCAC+CGG | - | chr6_1:81571946-81571965 | None:intergenic | 50.0% |
| ATTGAAGCAACATCCTCCCC+TGG | - | chr6_1:81572023-81572042 | None:intergenic | 50.0% | |
| TAGTACCTAGTCTAGCGCCA+AGG | - | chr6_1:81572451-81572470 | None:intergenic | 50.0% | |
| GGCGCTAGACTAGGTACTAT+AGG | + | chr6_1:81572452-81572471 | Msa0894940:intron | 50.0% | |
| CCTATAGCACCTTAGCCTAG+CGG | - | chr6_1:81573226-81573245 | None:intergenic | 50.0% | |
| ! | CGCTAGGCTAAGGTGCTATA+GGG | + | chr6_1:81573224-81573243 | Msa0894940:intron | 50.0% |
| ! | TGTTGTCGGTTGTGGAACAC+TGG | + | chr6_1:81573724-81573743 | Msa0894940:intron | 50.0% |
| GTGCTTTAGCGCTAGACTAG+AGG | + | chr6_1:81573962-81573981 | Msa0894940:intron | 50.0% | |
| GGGTTCAAATTCTGCTACGC+TGG | + | chr6_1:81574165-81574184 | Msa0894940:intron | 50.0% | |
| TGCTACGCTGGACTGCTATA+GGG | + | chr6_1:81574177-81574196 | Msa0894940:intron | 50.0% | |
| !! | GCTTGCTATAGGGCTCCTAT+AGG | + | chr6_1:81574395-81574414 | Msa0894940:intron | 50.0% |
| GTACCAAGTCTTCTCAACCG+TGG | + | chr6_1:81574787-81574806 | Msa0894940:intron | 50.0% | |
| GATCCACGGTTGAGAAGACT+TGG | - | chr6_1:81574793-81574812 | None:intergenic | 50.0% | |
| GTCTTCTCAACCGTGGATCA+CGG | + | chr6_1:81574794-81574813 | Msa0894940:intron | 50.0% | |
| TCTTCTCAACCGTGGATCAC+GGG | + | chr6_1:81574795-81574814 | Msa0894940:intron | 50.0% | |
| CCTCTATTTCCCGTGATCCA+CGG | - | chr6_1:81574807-81574826 | None:intergenic | 50.0% | |
| TCCTTGCTCATCCACACCAA+CGG | - | chr6_1:81575114-81575133 | None:intergenic | 50.0% | |
| GCAAGGACCTTTCCGCAATA+AGG | + | chr6_1:81575127-81575146 | Msa0894940:CDS | 50.0% | |
| GGACCTTTCCGCAATAAGGA+CGG | + | chr6_1:81575131-81575150 | Msa0894940:CDS | 50.0% | |
| GACCTTTCCGCAATAAGGAC+GGG | + | chr6_1:81575132-81575151 | Msa0894940:CDS | 50.0% | |
| AACCCGTCCTTATTGCGGAA+AGG | - | chr6_1:81575137-81575156 | None:intergenic | 50.0% | |
| GGAATCACTGCCTCCAATAG+AGG | + | chr6_1:81576047-81576066 | Msa0894940:CDS | 50.0% | |
| ATCACTGCCTCCAATAGAGG+TGG | + | chr6_1:81576050-81576069 | Msa0894940:CDS | 50.0% | |
| ! | GAAACTCCGGCGGTGTTTTC+CGG | - | chr6_1:81571552-81571571 | None:intergenic | 55.0% |
| TGAAAGAGGAGGAGGTGGAC+GGG | - | chr6_1:81571603-81571622 | None:intergenic | 55.0% | |
| !! | TTCGTCGGAGGAAGGCATTG+TGG | - | chr6_1:81571649-81571668 | None:intergenic | 55.0% |
| ! | GTATTTTCAGCCTCCAGGGG+AGG | + | chr6_1:81572007-81572026 | Msa0894940:CDS | 55.0% |
| CGGCTCGTTCAAATTCCGCT+AGG | + | chr6_1:81573208-81573227 | Msa0894940:intron | 55.0% | |
| ! | CCGCTAGGCTAAGGTGCTAT+AGG | + | chr6_1:81573223-81573242 | Msa0894940:intron | 55.0% |
| CTGCTACGCTGGACTGCTAT+AGG | + | chr6_1:81574176-81574195 | Msa0894940:intron | 55.0% | |
| !! | TGCGCTGGAGTGCTTGCTAT+AGG | + | chr6_1:81574384-81574403 | Msa0894940:intron | 55.0% |
| !! | GCGCTGGAGTGCTTGCTATA+GGG | + | chr6_1:81574385-81574404 | Msa0894940:intron | 55.0% |
| CCGTGGATCACGGGAAATAG+AGG | + | chr6_1:81574804-81574823 | Msa0894940:intron | 55.0% | |
| TGTACCTGTGACCGTTGGTG+TGG | + | chr6_1:81575100-81575119 | Msa0894940:CDS | 55.0% | |
| TCATCCACACCAACGGTCAC+AGG | - | chr6_1:81575107-81575126 | None:intergenic | 55.0% | |
| ACCGTTGGTGTGGATGAGCA+AGG | + | chr6_1:81575110-81575129 | Msa0894940:CDS | 55.0% | |
| GCGGGGAGAAACCAGATGAT+TGG | + | chr6_1:81575983-81576002 | Msa0894940:CDS | 55.0% | |
| ACCTCACCGGAAAACACCGC+CGG | + | chr6_1:81571543-81571562 | Msa0894940:five_prime_UTR | 60.0% | |
| ACACCGCCGGAGTTTCTCAC+CGG | + | chr6_1:81571556-81571575 | Msa0894940:five_prime_UTR | 60.0% | |
| TGGTGGCCGGTGAGAAACTC+CGG | - | chr6_1:81571565-81571584 | None:intergenic | 60.0% | |
| AGGAGGAGGTGGACGGGATT+TGG | - | chr6_1:81571597-81571616 | None:intergenic | 60.0% | |
| GTGGGTTCTTCGTCGGAGGA+AGG | - | chr6_1:81571657-81571676 | None:intergenic | 60.0% | |
| !! | TGTGGTGGGTTCTTCGTCGG+AGG | - | chr6_1:81571661-81571680 | None:intergenic | 60.0% |
| GAAGCAACATCCTCCCCTGG+AGG | - | chr6_1:81572020-81572039 | None:intergenic | 60.0% | |
| TAGCGCCTTGGCGCTAGACT+AGG | + | chr6_1:81572443-81572462 | Msa0894940:intron | 60.0% | |
| ! | TCCGGCGGTGTTTTCCGGTG+AGG | - | chr6_1:81571547-81571566 | None:intergenic | 65.0% |
| TGGCCGGTGAGAAACTCCGG+CGG | - | chr6_1:81571562-81571581 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 81571512 | 81576393 | 81571512 | ID=Msa0894940;Name=Msa0894940 |
| chr6_1 | mRNA | 81571512 | 81576393 | 81571512 | ID=Msa0894940-mRNA-1;Parent=Msa0894940;Name=Msa0894940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=139|1|1|1|1|1|3|172|390 |
| chr6_1 | exon | 81571512 | 81572079 | 81571512 | ID=Msa0894940-mRNA-1:exon:13723;Parent=Msa0894940-mRNA-1 |
| chr6_1 | exon | 81575071 | 81575296 | 81575071 | ID=Msa0894940-mRNA-1:exon:13724;Parent=Msa0894940-mRNA-1 |
| chr6_1 | exon | 81575704 | 81576393 | 81575704 | ID=Msa0894940-mRNA-1:exon:13725;Parent=Msa0894940-mRNA-1 |
| chr6_1 | five_prime_UTR | 81571512 | 81571650 | 81571512 | ID=Msa0894940-mRNA-1:five_prime_utr;Parent=Msa0894940-mRNA-1 |
| chr6_1 | CDS | 81571651 | 81572079 | 81571651 | ID=Msa0894940-mRNA-1:cds;Parent=Msa0894940-mRNA-1 |
| chr6_1 | CDS | 81575071 | 81575296 | 81575071 | ID=Msa0894940-mRNA-1:cds;Parent=Msa0894940-mRNA-1 |
| chr6_1 | CDS | 81575704 | 81576221 | 81575704 | ID=Msa0894940-mRNA-1:cds;Parent=Msa0894940-mRNA-1 |
| chr6_1 | three_prime_UTR | 81576222 | 81576393 | 81576222 | ID=Msa0894940-mRNA-1:three_prime_utr;Parent=Msa0894940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
