AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0999100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0999100 MtrunA17_Chr6g0485241 97.600 375 4 3 1 375 1 370 0.0 729
Msa0999100 MtrunA17_Chr2g0331931 51.754 228 98 5 132 354 273 493 6.51e-58 196
Msa0999100 MtrunA17_Chr8g0344681 28.358 268 144 6 133 353 68 334 3.49e-21 94.0
Msa0999100 MtrunA17_Chr4g0041151 37.190 121 58 4 119 222 5 124 6.45e-17 80.5
Msa0999100 MtrunA17_Chr1g0179531 38.235 102 60 2 131 231 131 230 4.85e-16 79.3
Msa0999100 MtrunA17_Chr2g0283871 35.106 94 56 2 133 222 23 115 2.62e-15 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0999100 AT3G24490.1 56.957 230 91 2 132 361 89 310 8.96e-83 256
Msa0999100 AT3G58630.2 27.055 292 156 7 115 353 7 294 4.25e-27 109
Msa0999100 AT3G58630.1 27.055 292 156 7 115 353 7 294 5.07e-27 109
Msa0999100 AT3G10030.2 33.149 181 109 4 47 225 82 252 1.67e-18 87.4
Msa0999100 AT3G10030.1 33.149 181 109 4 47 225 82 252 3.28e-18 86.7
Msa0999100 AT5G05550.3 32.468 231 122 7 133 351 24 232 9.22e-18 82.4
Msa0999100 AT5G05550.1 32.468 231 122 7 133 351 24 232 1.28e-17 82.0
Msa0999100 AT3G14180.1 37.405 131 65 4 104 227 58 178 1.67e-17 84.0
Msa0999100 AT5G05550.2 32.468 231 122 7 133 351 24 232 1.77e-17 81.6
Msa0999100 AT1G54060.1 28.846 260 140 8 133 351 94 349 1.11e-16 81.3
Msa0999100 AT3G11100.1 33.333 231 125 7 133 351 22 235 1.47e-16 79.0
Msa0999100 AT3G24860.1 35.870 92 53 1 133 224 65 150 6.50e-13 69.3

Find 96 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGATTCGATTCAGAAATT+TGG 0.112221 6_4:+80787982 Msa0999100:CDS
GTTGCAGAAGAAGCAGATTT+TGG 0.210644 6_4:+80788092 Msa0999100:CDS
TGGGATTAAGTTCTTGTAAA+TGG 0.218020 6_4:+80787701 Msa0999100:CDS
GGAGGCTTCGTATAGGATTT+TGG 0.224205 6_4:+80787960 Msa0999100:CDS
CTGAAAGAGTGCACCAGTTT+TGG 0.226370 6_4:+80791382 Msa0999100:three_prime_UTR
CTTGCTTGTGGTGTTGATTC+GGG 0.238266 6_4:+80787781 Msa0999100:CDS
GGTGAGAAGTTTCTTCAAAT+TGG 0.239028 6_4:+80787523 Msa0999100:CDS
CTGATTCGATTCAGAAATTT+GGG 0.270259 6_4:+80787983 Msa0999100:CDS
AAGCTTATATTCAGCTGAAT+AGG 0.276012 6_4:-80791552 None:intergenic
CGTTTGTGTTGTTAGAGATA+TGG 0.280545 6_4:+80787500 Msa0999100:CDS
AGTGGCCCTAGTGGCGGTTT+TGG 0.306452 6_4:+80787343 Msa0999100:CDS
TCGAGTTCTGTCCATTCCTC+TGG 0.317779 6_4:+80787451 Msa0999100:CDS
AGAATGGATGAGATGGGTTT+GGG 0.330760 6_4:+80787682 Msa0999100:CDS
TGATATTGTAAGTTACGAAT+TGG 0.332259 6_4:-80787172 None:intergenic
ACTTGCTTGTGGTGTTGATT+CGG 0.332404 6_4:+80787780 Msa0999100:CDS
TCTTAGGTATTAAATAATCT+TGG 0.335426 6_4:+80791344 Msa0999100:intron
TGCAATCTTGCCTCCAAAAC+TGG 0.346573 6_4:-80791395 None:intergenic
GTTATAATCATCGAATTCTT+CGG 0.353879 6_4:-80787236 None:intergenic
TTATAATCATCGAATTCTTC+GGG 0.363359 6_4:-80787235 None:intergenic
ACAATTGCACAATAATTTGC+AGG 0.368148 6_4:-80791503 None:intergenic
GTGAGAAGTTTCTTCAAATT+GGG 0.369920 6_4:+80787524 Msa0999100:CDS
AGCTTATATTCAGCTGAATA+GGG 0.378149 6_4:-80791551 None:intergenic
TAGAATGGATGAGATGGGTT+TGG 0.395377 6_4:+80787681 Msa0999100:CDS
AACGTAGATGAAGACGGAAT+TGG 0.404212 6_4:+80787256 Msa0999100:CDS
GATGAAGACGGAATTGGAAA+TGG 0.406005 6_4:+80787262 Msa0999100:CDS
GAAGAGTAGAATGGATGAGA+TGG 0.406263 6_4:+80787675 Msa0999100:CDS
GTTTGTGTTGTTAGAGATAT+GGG 0.412812 6_4:+80787501 Msa0999100:CDS
GATATTGTAAGTTACGAATT+GGG 0.429997 6_4:-80787171 None:intergenic
ATACCAGGGTTTATTTGAAT+AGG 0.432946 6_4:+80787821 Msa0999100:CDS
CCACCACCAAAACCGCCACT+AGG 0.438484 6_4:-80787349 None:intergenic
AAGAGTAGAATGGATGAGAT+GGG 0.457358 6_4:+80787676 Msa0999100:CDS
TAAGAAAGAGAAGAGTAGAA+TGG 0.459638 6_4:+80787666 Msa0999100:CDS
TTATGAATTGTTGCCGCCAT+GGG 0.464247 6_4:+80787390 Msa0999100:CDS
CTGAGGAGTTGAAAGTTGAA+AGG 0.467561 6_4:+80787596 Msa0999100:CDS
TCATTTGTGTTCTCTGACTG+TGG 0.468048 6_4:+80791440 Msa0999100:three_prime_UTR
GATTCAAGATACCCATCAAA+AGG 0.470251 6_4:+80787106 Msa0999100:CDS
GGAGTTGGAGAAGGTGAGGT+TGG 0.470646 6_4:+80788050 Msa0999100:CDS
GGCTGAAATATCGAAAATAC+AGG 0.472979 6_4:+80788125 Msa0999100:CDS
GGAATTGGAAATGGGTATGT+TGG 0.473631 6_4:+80787271 Msa0999100:CDS
CGAGTTCTGTCCATTCCTCT+GGG 0.474330 6_4:+80787452 Msa0999100:CDS
TACTAAGAGGCAACAGATGA+TGG 0.477066 6_4:+80788029 Msa0999100:CDS
ATGAAGACGGAATTGGAAAT+GGG 0.477798 6_4:+80787263 Msa0999100:CDS
TCGAGTGCGAGACAAGAGTA+TGG 0.478047 6_4:+80787757 Msa0999100:CDS
ATTCCTCTGGGTCGGAGGAA+TGG 0.482329 6_4:+80787464 Msa0999100:CDS
TTCTGTCCATTCCTCTGGGT+CGG 0.485623 6_4:+80787456 Msa0999100:CDS
GTGTAGGAGTGTATTGGATA+AGG 0.493185 6_4:+80787630 Msa0999100:CDS
AAGAGGAGGAGGCTTCGTAT+AGG 0.493270 6_4:+80787953 Msa0999100:CDS
GTGTATTGGATAAGGTGAAG+AGG 0.499755 6_4:+80787638 Msa0999100:CDS
ATTATGAATTGTTGCCGCCA+TGG 0.507987 6_4:+80787389 Msa0999100:CDS
GGATGATGTCGATAGGGAAG+AGG 0.514505 6_4:+80787936 Msa0999100:CDS
GAATGGATTTGATGAGATGA+GGG 0.516784 6_4:+80787846 Msa0999100:CDS
GAGGCAACAGATGATGGAGT+TGG 0.516973 6_4:+80788035 Msa0999100:CDS
TGATGTCGATAGGGAAGAGG+AGG 0.521958 6_4:+80787939 Msa0999100:CDS
TGTCGATAGGGAAGAGGAGG+AGG 0.528458 6_4:+80787942 Msa0999100:CDS
CTTCAATTCAATGGACGACA+TGG 0.528859 6_4:+80787078 Msa0999100:exon
AGAAGATTGAGAATACTAAG+AGG 0.534145 6_4:+80788016 Msa0999100:CDS
CGAATGGATTTGATGAGATG+AGG 0.535045 6_4:+80787845 Msa0999100:CDS
TTGCTTGTGGTGTTGATTCG+GGG 0.537559 6_4:+80787782 Msa0999100:CDS
CACCACCAAAACCGCCACTA+GGG 0.545654 6_4:-80787348 None:intergenic
GGATGATGATGATGAGGATG+AGG 0.549901 6_4:+80787897 Msa0999100:CDS
AGTATGTGTTTATGAATACC+AGG 0.551827 6_4:+80787806 Msa0999100:CDS
AAGATTGCATAGAAGTATGA+AGG 0.552988 6_4:+80791409 Msa0999100:three_prime_UTR
ATTCCTCCGACCCAGAGGAA+TGG 0.555282 6_4:-80787462 None:intergenic
TTGTTGCCGCCATGGGGCAG+TGG 0.558563 6_4:+80787397 Msa0999100:CDS
AGAAGTTTCTTCAAATTGGG+AGG 0.559816 6_4:+80787527 Msa0999100:CDS
GTTTATTTGAATAGGTCGAA+TGG 0.561187 6_4:+80787829 Msa0999100:CDS
GGCACAGTGTAGGAGTGTAT+TGG 0.561474 6_4:+80787624 Msa0999100:CDS
ACAGATGATGGAGTTGGAGA+AGG 0.562220 6_4:+80788041 Msa0999100:CDS
AAAGGAATGTGGCACAGTGT+AGG 0.572005 6_4:+80787614 Msa0999100:CDS
ATTCAAGATACCCATCAAAA+GGG 0.572324 6_4:+80787107 Msa0999100:CDS
TGTCCATTCCTCTGGGTCGG+AGG 0.586004 6_4:+80787459 Msa0999100:CDS
GAGGAATAGTTTGAGATCAG+AGG 0.586253 6_4:+80787546 Msa0999100:CDS
TTCTGAGGATGATGATGATG+AGG 0.586254 6_4:+80787891 Msa0999100:CDS
TCAGAACTCTCAGACTCACC+AGG 0.597701 6_4:-80787874 None:intergenic
TGGTGAGTCTGAGAGTTCTG+AGG 0.600777 6_4:+80787876 Msa0999100:CDS
TGATGAGGATGATGTCGATA+GGG 0.605846 6_4:+80787930 Msa0999100:CDS
TGATGGAGTTGGAGAAGGTG+AGG 0.617953 6_4:+80788046 Msa0999100:CDS
ATAGTTTGAGATCAGAGGAA+TGG 0.618950 6_4:+80787551 Msa0999100:CDS
ATGCGAAGTGGCCCTAGTGG+CGG 0.619751 6_4:+80787337 Msa0999100:CDS
GAAAATTTACCACTGCCCCA+TGG 0.622030 6_4:-80787406 None:intergenic
TGCTTGTGGTGTTGATTCGG+GGG 0.626912 6_4:+80787783 Msa0999100:CDS
GTGATGAGGATGATGTCGAT+AGG 0.628162 6_4:+80787929 Msa0999100:CDS
AGTTGCTGAGAAAGTTTCTG+AGG 0.628405 6_4:+80787579 Msa0999100:CDS
CGACCTATTCAAATAAACCC+TGG 0.636066 6_4:-80787824 None:intergenic
GATTATAACGTAGATGAAGA+CGG 0.641525 6_4:+80787250 Msa0999100:CDS
TATGAATTGTTGCCGCCATG+GGG 0.651070 6_4:+80787391 Msa0999100:CDS
GATGAGATGAGGGATAGTCC+TGG 0.652387 6_4:+80787856 Msa0999100:CDS
CAAGAGTATGGACTTGCTTG+TGG 0.652939 6_4:+80787769 Msa0999100:CDS
GTTGAAAGTTGAAAGGAATG+TGG 0.654797 6_4:+80787603 Msa0999100:CDS
TTTGTGTTGTTAGAGATATG+GGG 0.660660 6_4:+80787502 Msa0999100:CDS
TGATGCTGATGGTGATGATG+AGG 0.663076 6_4:+80788158 Msa0999100:CDS
GTATGTGTTTATGAATACCA+GGG 0.664776 6_4:+80787807 Msa0999100:CDS
AAAATGCGAAGTGGCCCTAG+TGG 0.671315 6_4:+80787334 Msa0999100:CDS
TGTCCATTCCTCCGACCCAG+AGG 0.680725 6_4:-80787467 None:intergenic
GAAGCAGTAGATGATGCTGA+TGG 0.735151 6_4:+80788147 Msa0999100:CDS
AATTTACCACTGCCCCATGG+CGG 0.737952 6_4:-80787403 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAAAAATTTGAATTTTTT+TGG - chr6_4:80787018-80787037 None:intergenic 10.0%
!!! AATTTGAATTTTTTTGGTTA+GGG - chr6_4:80787012-80787031 None:intergenic 15.0%
!!! AAATTTGAATTTTTTTGGTT+AGG - chr6_4:80787013-80787032 None:intergenic 15.0%
!!! TTTATATTTTTATACAAGTG+AGG - chr6_4:80789048-80789067 None:intergenic 15.0%
!! TTTATCAATAAAACCATTAA+GGG - chr6_4:80790729-80790748 None:intergenic 15.0%
!!! TTTCGTTTTTTTTGTTTGTT+TGG - chr6_4:80786959-80786978 None:intergenic 20.0%
!! ATTGAATTGAAGAAAAATTG+GGG - chr6_4:80787070-80787089 None:intergenic 20.0%
!! CATTGAATTGAAGAAAAATT+GGG - chr6_4:80787071-80787090 None:intergenic 20.0%
!!! GAAATTTTGAAGAAAATGTT+GGG + chr6_4:80787293-80787312 Msa0999100:CDS 20.0%
!! CTTATGATTTGATTATAGTA+TGG + chr6_4:80788280-80788299 Msa0999100:intron 20.0%
!!! TTTATGGATTGTAACATTTA+TGG + chr6_4:80788859-80788878 Msa0999100:intron 20.0%
!!! TTATGGATTGTAACATTTAT+GGG + chr6_4:80788860-80788879 Msa0999100:intron 20.0%
!!! TTTTTCTGACTAAATGTTAA+TGG + chr6_4:80789220-80789239 Msa0999100:intron 20.0%
!! TATTCTTTACACAAATTGAT+TGG + chr6_4:80789744-80789763 Msa0999100:intron 20.0%
!! GTTTATCAATAAAACCATTA+AGG - chr6_4:80790730-80790749 None:intergenic 20.0%
!! AAATCAAGCTCATAAATAAA+AGG - chr6_4:80790825-80790844 None:intergenic 20.0%
!!! TTTATTAAGGAGTTTGAAAT+TGG + chr6_4:80791058-80791077 Msa0999100:intron 20.0%
!!! ATTATATATGTGTCATTTAC+AGG + chr6_4:80791114-80791133 Msa0999100:intron 20.0%
!!! TTATATATGTGTCATTTACA+GGG + chr6_4:80791115-80791134 Msa0999100:intron 20.0%
!! AGAAATAGTCTAAATAATCA+AGG - chr6_4:80791246-80791265 None:intergenic 20.0%
!!! TTTTACATTTTTTCTGTCTT+AGG + chr6_4:80791328-80791347 Msa0999100:intron 20.0%
!! TCTTAGGTATTAAATAATCT+TGG + chr6_4:80791344-80791363 Msa0999100:intron 20.0%
!!! TTTGTGTTTTTGTTCAGTTT+GGG - chr6_4:80786988-80787007 None:intergenic 25.0%
!!! TTTTGTGTTTTTGTTCAGTT+TGG - chr6_4:80786989-80787008 None:intergenic 25.0%
! CCATTGAATTGAAGAAAAAT+TGG - chr6_4:80787072-80787091 None:intergenic 25.0%
!! CCAATTTTTCTTCAATTCAA+TGG + chr6_4:80787069-80787088 Msa0999100:exon 25.0%
! GATATTGTAAGTTACGAATT+GGG - chr6_4:80787174-80787193 None:intergenic 25.0%
! TGATATTGTAAGTTACGAAT+TGG - chr6_4:80787175-80787194 None:intergenic 25.0%
! TTATAATCATCGAATTCTTC+GGG - chr6_4:80787238-80787257 None:intergenic 25.0%
! GTTATAATCATCGAATTCTT+CGG - chr6_4:80787239-80787258 None:intergenic 25.0%
!!! GGAAATTTTGAAGAAAATGT+TGG + chr6_4:80787292-80787311 Msa0999100:CDS 25.0%
!! AAATTTTCGAACTTTAATCG+TGG + chr6_4:80787421-80787440 Msa0999100:CDS 25.0%
! ATATCCATCTTCTTGAAAAA+TGG - chr6_4:80787727-80787746 None:intergenic 25.0%
! ATAATCTCAGTGAATAATGT+AGG + chr6_4:80788199-80788218 Msa0999100:intron 25.0%
!!! ACTATACATGTTTTTTTGTG+TGG + chr6_4:80788520-80788539 Msa0999100:intron 25.0%
!!! AACGTAATTTACTGCTTTTA+TGG + chr6_4:80788843-80788862 Msa0999100:intron 25.0%
!! TCGATAATTTTTAAACGACA+TGG - chr6_4:80788959-80788978 None:intergenic 25.0%
! TAAAAATTATCGACCTATCT+TGG + chr6_4:80788966-80788985 Msa0999100:intron 25.0%
! AATGTTAATGGAAGAACATT+AGG + chr6_4:80789232-80789251 Msa0999100:intron 25.0%
! AAGAATAATTAGCACATCAT+TGG - chr6_4:80789605-80789624 None:intergenic 25.0%
! TTTCTTAAACAAAACAACTG+AGG - chr6_4:80789696-80789715 None:intergenic 25.0%
!!! TTTTGTTTTTATGCTTTCAC+TGG + chr6_4:80789787-80789806 Msa0999100:intron 25.0%
! CTGTATTTGTAATTGTATCA+TGG + chr6_4:80789865-80789884 Msa0999100:intron 25.0%
! AACAAAATTGCTTTCTAATG+TGG + chr6_4:80789963-80789982 Msa0999100:intron 25.0%
! ACAAAATTGCTTTCTAATGT+GGG + chr6_4:80789964-80789983 Msa0999100:intron 25.0%
! CATCAATTCTTGAATTCTAA+GGG + chr6_4:80790136-80790155 Msa0999100:intron 25.0%
! AAAATATTGCTTCCTAAGTT+AGG + chr6_4:80790497-80790516 Msa0999100:intron 25.0%
! AAATATTGCTTCCTAAGTTA+GGG + chr6_4:80790498-80790517 Msa0999100:intron 25.0%
!! TAATGGATATGAAGTAATCA+AGG - chr6_4:80790597-80790616 None:intergenic 25.0%
! TTCATATCCATTAGATGTTT+GGG + chr6_4:80790604-80790623 Msa0999100:intron 25.0%
!! ACTTTTCCAATTGTTCTTTT+AGG + chr6_4:80790867-80790886 Msa0999100:intron 25.0%
! CTATACTACATAAGCAAAAA+AGG - chr6_4:80790960-80790979 None:intergenic 25.0%
! ATGTAGTATAGAAAGAAACT+AGG + chr6_4:80790969-80790988 Msa0999100:intron 25.0%
! AGTAGCAAAATGTAAAGATA+GGG - chr6_4:80790996-80791015 None:intergenic 25.0%
!!! TGACGAAGTTTTTTGTTTTT+TGG + chr6_4:80791028-80791047 Msa0999100:intron 25.0%
!! TTTTGGCAACAACTTTATTA+AGG + chr6_4:80791045-80791064 Msa0999100:intron 25.0%
!!! TATATATGTGTCATTTACAG+GGG + chr6_4:80791116-80791135 Msa0999100:intron 25.0%
!! AATTTTCAATTATTGCTCTC+TGG + chr6_4:80791646-80791665 Msa0999100:three_prime_UTR 25.0%
!! TTGTGTTTTTGTTCAGTTTG+GGG - chr6_4:80786987-80787006 None:intergenic 30.0%
ATTCAAGATACCCATCAAAA+GGG + chr6_4:80787107-80787126 Msa0999100:CDS 30.0%
GATTATAACGTAGATGAAGA+CGG + chr6_4:80787250-80787269 Msa0999100:CDS 30.0%
AAAAAGAGAAAAATGCGAAG+TGG + chr6_4:80787325-80787344 Msa0999100:CDS 30.0%
! GTTTGTGTTGTTAGAGATAT+GGG + chr6_4:80787501-80787520 Msa0999100:CDS 30.0%
! TTTGTGTTGTTAGAGATATG+GGG + chr6_4:80787502-80787521 Msa0999100:CDS 30.0%
GTGAGAAGTTTCTTCAAATT+GGG + chr6_4:80787524-80787543 Msa0999100:CDS 30.0%
TAAGAAAGAGAAGAGTAGAA+TGG + chr6_4:80787666-80787685 Msa0999100:CDS 30.0%
TGGGATTAAGTTCTTGTAAA+TGG + chr6_4:80787701-80787720 Msa0999100:CDS 30.0%
AGTATGTGTTTATGAATACC+AGG + chr6_4:80787806-80787825 Msa0999100:CDS 30.0%
GTATGTGTTTATGAATACCA+GGG + chr6_4:80787807-80787826 Msa0999100:CDS 30.0%
ATACCAGGGTTTATTTGAAT+AGG + chr6_4:80787821-80787840 Msa0999100:CDS 30.0%
GTTTATTTGAATAGGTCGAA+TGG + chr6_4:80787829-80787848 Msa0999100:CDS 30.0%
! CTGATTCGATTCAGAAATTT+GGG + chr6_4:80787983-80788002 Msa0999100:CDS 30.0%
AGAAGATTGAGAATACTAAG+AGG + chr6_4:80788016-80788035 Msa0999100:CDS 30.0%
!! GTTGGATTTTAATAGGGAAT+TGG + chr6_4:80788068-80788087 Msa0999100:CDS 30.0%
GTTGCAATACAAAACAAATC+TGG - chr6_4:80788320-80788339 None:intergenic 30.0%
GATGAAGTAGTTATACTTCT+CGG + chr6_4:80788460-80788479 Msa0999100:intron 30.0%
TGGATTGAGTTAATTTCTCA+AGG + chr6_4:80788492-80788511 Msa0999100:intron 30.0%
ATAAGATCAATTCCCAATGA+AGG + chr6_4:80788551-80788570 Msa0999100:intron 30.0%
TAAGATCAATTCCCAATGAA+GGG + chr6_4:80788552-80788571 Msa0999100:intron 30.0%
ATCAAATCACATTCAAGCTA+AGG - chr6_4:80788625-80788644 None:intergenic 30.0%
ATCAAATCACATTCAAGCTA+AGG - chr6_4:80788625-80788644 None:intergenic 30.0%
TAGATGGTTTCCTAATCTAT+GGG + chr6_4:80788800-80788819 Msa0999100:intron 30.0%
! TTCCTAATCTATGGGTTAAA+TGG + chr6_4:80788808-80788827 Msa0999100:intron 30.0%
ATGAAAAGTCTAACCAAGAT+AGG - chr6_4:80788982-80789001 None:intergenic 30.0%
ACATGAATTGTCAAATCACT+TGG + chr6_4:80789005-80789024 Msa0999100:intron 30.0%
! ATCACTTGGTGAAATGAATT+TGG + chr6_4:80789019-80789038 Msa0999100:intron 30.0%
GATTTGAATATGTGATCTCT+AGG + chr6_4:80789383-80789402 Msa0999100:intron 30.0%
GTTACATCATTTCCTTTAGA+AGG - chr6_4:80789446-80789465 None:intergenic 30.0%
! CTTAGTCTCTATACATGTTT+TGG - chr6_4:80789534-80789553 None:intergenic 30.0%
GTGCTAATTATTCTTCTGAA+AGG + chr6_4:80789610-80789629 Msa0999100:intron 30.0%
AAATGTCGCTAATGCATAAA+AGG - chr6_4:80789770-80789789 None:intergenic 30.0%
CAAAAAAAAAAACCGAACTC+AGG - chr6_4:80790026-80790045 None:intergenic 30.0%
TCACCAATTCTTGAATTCTA+AGG + chr6_4:80790077-80790096 Msa0999100:intron 30.0%
CACCAATTCTTGAATTCTAA+GGG + chr6_4:80790078-80790097 Msa0999100:intron 30.0%
AACCCTTAGAATTCAAGAAT+TGG - chr6_4:80790083-80790102 None:intergenic 30.0%
GCATCAATTCTTGAATTCTA+AGG + chr6_4:80790135-80790154 Msa0999100:intron 30.0%
CAAACCAGACAAAAACAAAA+CGG - chr6_4:80790331-80790350 None:intergenic 30.0%
!!! TCATTTTTTCATGCTCTGTT+TGG + chr6_4:80790423-80790442 Msa0999100:intron 30.0%
! GACTTGAATTTTTGAATCAC+TGG - chr6_4:80790575-80790594 None:intergenic 30.0%
CTTCATATCCATTAGATGTT+TGG + chr6_4:80790603-80790622 Msa0999100:intron 30.0%
TCAATAAAACCATTAAGGGT+AGG - chr6_4:80790725-80790744 None:intergenic 30.0%
AGAAATTGTTGGAATTTGCA+TGG - chr6_4:80790772-80790791 None:intergenic 30.0%
ATGCAAATTCCAACAATTTC+TGG + chr6_4:80790771-80790790 Msa0999100:intron 30.0%
! TTAAGCAGCAACAAATTTTC+AGG + chr6_4:80790843-80790862 Msa0999100:intron 30.0%
TTCATGCCTAAAAGAACAAT+TGG - chr6_4:80790876-80790895 None:intergenic 30.0%
CAGTAGCAAAATGTAAAGAT+AGG - chr6_4:80790997-80791016 None:intergenic 30.0%
TTTCTACTGCCAAGTTTAAA+TGG + chr6_4:80791261-80791280 Msa0999100:intron 30.0%
! TGCTTTTCACCATTTAAACT+TGG - chr6_4:80791273-80791292 None:intergenic 30.0%
! AAGATTGCATAGAAGTATGA+AGG + chr6_4:80791409-80791428 Msa0999100:three_prime_UTR 30.0%
! ACAATTGCACAATAATTTGC+AGG - chr6_4:80791506-80791525 None:intergenic 30.0%
AGCTTATATTCAGCTGAATA+GGG - chr6_4:80791554-80791573 None:intergenic 30.0%
AAGCTTATATTCAGCTGAAT+AGG - chr6_4:80791555-80791574 None:intergenic 30.0%
GATTCAAGATACCCATCAAA+AGG + chr6_4:80787106-80787125 Msa0999100:CDS 35.0%
!! GGTGTTTTTGACGAAGATTA+GGG - chr6_4:80787153-80787172 None:intergenic 35.0%
ATGAAGACGGAATTGGAAAT+GGG + chr6_4:80787263-80787282 Msa0999100:CDS 35.0%
! TTTTCGAACTTTAATCGTGG+TGG + chr6_4:80787424-80787443 Msa0999100:CDS 35.0%
! CGTTTGTGTTGTTAGAGATA+TGG + chr6_4:80787500-80787519 Msa0999100:CDS 35.0%
GGTGAGAAGTTTCTTCAAAT+TGG + chr6_4:80787523-80787542 Msa0999100:CDS 35.0%
AGAAGTTTCTTCAAATTGGG+AGG + chr6_4:80787527-80787546 Msa0999100:CDS 35.0%
! ATAGTTTGAGATCAGAGGAA+TGG + chr6_4:80787551-80787570 Msa0999100:CDS 35.0%
GTTGAAAGTTGAAAGGAATG+TGG + chr6_4:80787603-80787622 Msa0999100:CDS 35.0%
AAGAGTAGAATGGATGAGAT+GGG + chr6_4:80787676-80787695 Msa0999100:CDS 35.0%
!!! ATGGCCATTTTTCAAGAAGA+TGG + chr6_4:80787720-80787739 Msa0999100:CDS 35.0%
! GAATGGATTTGATGAGATGA+GGG + chr6_4:80787846-80787865 Msa0999100:CDS 35.0%
!! GCTGATTCGATTCAGAAATT+TGG + chr6_4:80787982-80788001 Msa0999100:CDS 35.0%
!! AGGTGAGGTTGGATTTTAAT+AGG + chr6_4:80788061-80788080 Msa0999100:CDS 35.0%
!! GGTGAGGTTGGATTTTAATA+GGG + chr6_4:80788062-80788081 Msa0999100:CDS 35.0%
! AGAAGAAGCAGATTTTGGAT+AGG + chr6_4:80788097-80788116 Msa0999100:CDS 35.0%
! GAAGAAGCAGATTTTGGATA+GGG + chr6_4:80788098-80788117 Msa0999100:CDS 35.0%
GGCTGAAATATCGAAAATAC+AGG + chr6_4:80788125-80788144 Msa0999100:CDS 35.0%
TCTCAGTGAATAATGTAGGT+AGG + chr6_4:80788203-80788222 Msa0999100:intron 35.0%
AGATACATGCTCGAACTTAA+AGG - chr6_4:80788391-80788410 None:intergenic 35.0%
TACCACACATGTGAGTATTT+CGG + chr6_4:80788437-80788456 Msa0999100:intron 35.0%
ATACTTCTCGGAACTTATCT+TGG + chr6_4:80788472-80788491 Msa0999100:intron 35.0%
!!! TGTTTTTTTGTGTGGTGTAC+CGG + chr6_4:80788528-80788547 Msa0999100:intron 35.0%
CATTGGGAATTGATCTTATC+CGG - chr6_4:80788550-80788569 None:intergenic 35.0%
CCTATAATCAACCCTTCATT+GGG - chr6_4:80788566-80788585 None:intergenic 35.0%
TCCTATAATCAACCCTTCAT+TGG - chr6_4:80788567-80788586 None:intergenic 35.0%
ACTCACTTCGTATTTGTTTG+AGG + chr6_4:80788586-80788605 Msa0999100:intron 35.0%
GTAGATGGTTTCCTAATCTA+TGG + chr6_4:80788799-80788818 Msa0999100:intron 35.0%
CACCATTTAACCCATAGATT+AGG - chr6_4:80788813-80788832 None:intergenic 35.0%
!! TTTTGAGTGTAGTAGACTTG+AGG + chr6_4:80789089-80789108 Msa0999100:intron 35.0%
ACAACCTTACTATTACACAG+AGG + chr6_4:80789416-80789435 Msa0999100:intron 35.0%
TGATGTCAAATAACCTTGAG+TGG + chr6_4:80789490-80789509 Msa0999100:intron 35.0%
GATGTCAAATAACCTTGAGT+GGG + chr6_4:80789491-80789510 Msa0999100:intron 35.0%
AAAATAACATGACCCACTCA+AGG - chr6_4:80789506-80789525 None:intergenic 35.0%
!! AGTCTCTATACATGTTTTGG+AGG - chr6_4:80789531-80789550 None:intergenic 35.0%
ATCCAACTTCTAGTGATAGA+TGG - chr6_4:80789564-80789583 None:intergenic 35.0%
GAAAGGTGAAACACAAGAAA+TGG + chr6_4:80789627-80789646 Msa0999100:intron 35.0%
TAAGACGAGTAAGAAGGTTA+CGG - chr6_4:80789673-80789692 None:intergenic 35.0%
! GTGAATCCTTTTATCTTCTC+TGG + chr6_4:80790103-80790122 Msa0999100:intron 35.0%
AAGAGACCAGAGAAGATAAA+AGG - chr6_4:80790112-80790131 None:intergenic 35.0%
! GTGAATCCTTTTATCTTCTC+TGG + chr6_4:80790103-80790122 Msa0999100:intron 35.0%
AAGAGACCAGAGAAGATAAA+AGG - chr6_4:80790112-80790131 None:intergenic 35.0%
TTCTCTTGTATTCACATGTC+AGG + chr6_4:80790289-80790308 Msa0999100:intron 35.0%
ACAAAAACAAAACGGAGAAG+AGG - chr6_4:80790323-80790342 None:intergenic 35.0%
!!! TTCTCCGTTTTGTTTTTGTC+TGG + chr6_4:80790324-80790343 Msa0999100:intron 35.0%
AAGAGAGCAAAACAGAAAAG+AGG - chr6_4:80790380-80790399 None:intergenic 35.0%
!! TTTGGCTCTTTGTTTCATTC+TGG + chr6_4:80790441-80790460 Msa0999100:intron 35.0%
TATCCATTAGATGTTTGGGT+AGG + chr6_4:80790608-80790627 Msa0999100:intron 35.0%
TCTGATGTATGCACCTATAT+TGG + chr6_4:80790632-80790651 Msa0999100:intron 35.0%
CTCACAGTAGAATCCAATAT+AGG - chr6_4:80790648-80790667 None:intergenic 35.0%
TCAATAGCAGAGTTGTTATC+TGG - chr6_4:80790677-80790696 None:intergenic 35.0%
!! AACTCTGCTATTGATTTCCA+TGG + chr6_4:80790683-80790702 Msa0999100:intron 35.0%
CTTCAATTCAATGGACGACA+TGG + chr6_4:80787078-80787097 Msa0999100:exon 40.0%
!!! GTAAAGGGTACCCTTTTGAT+GGG - chr6_4:80787120-80787139 None:intergenic 40.0%
! TAGGGTTTTTGCGTCGTAAA+GGG - chr6_4:80787135-80787154 None:intergenic 40.0%
! TTAGGGTTTTTGCGTCGTAA+AGG - chr6_4:80787136-80787155 None:intergenic 40.0%
!! GGGTGTTTTTGACGAAGATT+AGG - chr6_4:80787154-80787173 None:intergenic 40.0%
AACGTAGATGAAGACGGAAT+TGG + chr6_4:80787256-80787275 Msa0999100:CDS 40.0%
GATGAAGACGGAATTGGAAA+TGG + chr6_4:80787262-80787281 Msa0999100:CDS 40.0%
GGAATTGGAAATGGGTATGT+TGG + chr6_4:80787271-80787290 Msa0999100:CDS 40.0%
ATTATGAATTGTTGCCGCCA+TGG + chr6_4:80787389-80787408 Msa0999100:CDS 40.0%
TTATGAATTGTTGCCGCCAT+GGG + chr6_4:80787390-80787409 Msa0999100:CDS 40.0%
! GAGGAATAGTTTGAGATCAG+AGG + chr6_4:80787546-80787565 Msa0999100:CDS 40.0%
AGTTGCTGAGAAAGTTTCTG+AGG + chr6_4:80787579-80787598 Msa0999100:CDS 40.0%
CTGAGGAGTTGAAAGTTGAA+AGG + chr6_4:80787596-80787615 Msa0999100:CDS 40.0%
! GTGTAGGAGTGTATTGGATA+AGG + chr6_4:80787630-80787649 Msa0999100:CDS 40.0%
GTGTATTGGATAAGGTGAAG+AGG + chr6_4:80787638-80787657 Msa0999100:CDS 40.0%
GAAGAGTAGAATGGATGAGA+TGG + chr6_4:80787675-80787694 Msa0999100:CDS 40.0%
! TAGAATGGATGAGATGGGTT+TGG + chr6_4:80787681-80787700 Msa0999100:CDS 40.0%
! AGAATGGATGAGATGGGTTT+GGG + chr6_4:80787682-80787701 Msa0999100:CDS 40.0%
!! ACTTGCTTGTGGTGTTGATT+CGG + chr6_4:80787780-80787799 Msa0999100:CDS 40.0%
CGACCTATTCAAATAAACCC+TGG - chr6_4:80787827-80787846 None:intergenic 40.0%
! CGAATGGATTTGATGAGATG+AGG + chr6_4:80787845-80787864 Msa0999100:CDS 40.0%
! TTCTGAGGATGATGATGATG+AGG + chr6_4:80787891-80787910 Msa0999100:CDS 40.0%
! GATGAGGATGAGGATTTTGA+TGG + chr6_4:80787907-80787926 Msa0999100:CDS 40.0%
!!! TGAGGATTTTGATGGTGATG+AGG + chr6_4:80787915-80787934 Msa0999100:CDS 40.0%
TGATGAGGATGATGTCGATA+GGG + chr6_4:80787930-80787949 Msa0999100:CDS 40.0%
TACTAAGAGGCAACAGATGA+TGG + chr6_4:80788029-80788048 Msa0999100:CDS 40.0%
! GTTGCAGAAGAAGCAGATTT+TGG + chr6_4:80788092-80788111 Msa0999100:CDS 40.0%
ATGTAGGTAGGTGTGTTTGT+TGG + chr6_4:80788215-80788234 Msa0999100:intron 40.0%
ACCACACATGTGAGTATTTC+GGG + chr6_4:80788438-80788457 Msa0999100:intron 40.0%
! CCCAATGAAGGGTTGATTAT+AGG + chr6_4:80788563-80788582 Msa0999100:intron 40.0%
GTCCATGCTTTCCTTATCAA+CGG + chr6_4:80788775-80788794 Msa0999100:intron 40.0%
TCCATGCTTTCCTTATCAAC+GGG + chr6_4:80788776-80788795 Msa0999100:intron 40.0%
!!! TGCTGAACTTTTTTCCTGTG+AGG + chr6_4:80788896-80788915 Msa0999100:intron 40.0%
TCGACTATTCATGCTTATCC+TGG + chr6_4:80789125-80789144 Msa0999100:intron 40.0%
TTCATGCTTATCCTGGTATC+TGG + chr6_4:80789132-80789151 Msa0999100:intron 40.0%
TATGTGATCTCTAGGTCAGA+AGG + chr6_4:80789391-80789410 Msa0999100:intron 40.0%
AGAGCCTCTGTGTAATAGTA+AGG - chr6_4:80789423-80789442 None:intergenic 40.0%
GACCATCTATCACTAGAAGT+TGG + chr6_4:80789559-80789578 Msa0999100:intron 40.0%
! ACTCTTCCTTCTTTTCATCC+CGG + chr6_4:80789814-80789833 Msa0999100:intron 40.0%
TTACTCGTGAACTGCAATTC+CGG - chr6_4:80789836-80789855 None:intergenic 40.0%
TGCGAGTCAACTTATAGACT+CGG + chr6_4:80789898-80789917 Msa0999100:intron 40.0%
!! TAAACTCGTTTTGGGTAGCT+GGG - chr6_4:80789937-80789956 None:intergenic 40.0%
! TTCGCGAGTAAACTCGTTTT+GGG - chr6_4:80789945-80789964 None:intergenic 40.0%
CTTTCTAATGTGGGCATACT+CGG + chr6_4:80789973-80789992 Msa0999100:intron 40.0%
TTTCTAATGTGGGCATACTC+GGG + chr6_4:80789974-80789993 Msa0999100:intron 40.0%
CATCTCTTCCATCTTTGTGA+CGG + chr6_4:80790194-80790213 Msa0999100:intron 40.0%
CAACATACAGTTCAACTCGT+CGG - chr6_4:80790251-80790270 None:intergenic 40.0%
! GCTCTTTGTTTCATTCTGGT+TGG + chr6_4:80790445-80790464 Msa0999100:intron 40.0%
TATTGCTTCCTAAGTTAGGG+TGG + chr6_4:80790501-80790520 Msa0999100:intron 40.0%
GATACACTACAGCAAGTCTT+TGG - chr6_4:80790553-80790572 None:intergenic 40.0%
GAACCTACCCAAACATCTAA+TGG - chr6_4:80790614-80790633 None:intergenic 40.0%
ATAGCAGAGTTGTTATCTGG+AGG - chr6_4:80790674-80790693 None:intergenic 40.0%
GCATGGAAAAGAGCAATATC+AGG - chr6_4:80790755-80790774 None:intergenic 40.0%
GTGATTGTGCCAGAAATTGT+TGG - chr6_4:80790783-80790802 None:intergenic 40.0%
TATGAGTCGAGTCTACAGTA+CGG + chr6_4:80791182-80791201 Msa0999100:intron 40.0%
TCATTTGTGTTCTCTGACTG+TGG + chr6_4:80791440-80791459 Msa0999100:three_prime_UTR 40.0%
!!! CGTAAAGGGTACCCTTTTGA+TGG - chr6_4:80787121-80787140 None:intergenic 45.0%
TATGAATTGTTGCCGCCATG+GGG + chr6_4:80787391-80787410 Msa0999100:CDS 45.0%
GAAAATTTACCACTGCCCCA+TGG - chr6_4:80787409-80787428 None:intergenic 45.0%
AAAGGAATGTGGCACAGTGT+AGG + chr6_4:80787614-80787633 Msa0999100:CDS 45.0%
! CAAGAGTATGGACTTGCTTG+TGG + chr6_4:80787769-80787788 Msa0999100:CDS 45.0%
!! CTTGCTTGTGGTGTTGATTC+GGG + chr6_4:80787781-80787800 Msa0999100:CDS 45.0%
!! TTGCTTGTGGTGTTGATTCG+GGG + chr6_4:80787782-80787801 Msa0999100:CDS 45.0%
! GGATGATGATGATGAGGATG+AGG + chr6_4:80787897-80787916 Msa0999100:CDS 45.0%
GTGATGAGGATGATGTCGAT+AGG + chr6_4:80787929-80787948 Msa0999100:CDS 45.0%
! GGAGGCTTCGTATAGGATTT+TGG + chr6_4:80787960-80787979 Msa0999100:CDS 45.0%
!! ACAGATGATGGAGTTGGAGA+AGG + chr6_4:80788041-80788060 Msa0999100:CDS 45.0%
GAAGCAGTAGATGATGCTGA+TGG + chr6_4:80788147-80788166 Msa0999100:CDS 45.0%
! TGATGCTGATGGTGATGATG+AGG + chr6_4:80788158-80788177 Msa0999100:CDS 45.0%
TCCCGAAATACTCACATGTG+TGG - chr6_4:80788442-80788461 None:intergenic 45.0%
AAAGCATGGACAAGAGAGAG+AGG - chr6_4:80788766-80788785 None:intergenic 45.0%
CCATGCTTTCCTTATCAACG+GGG + chr6_4:80788777-80788796 Msa0999100:intron 45.0%
TTCCTTATCAACGGGGTAGA+TGG + chr6_4:80788784-80788803 Msa0999100:intron 45.0%
AACCATCTACCCCGTTGATA+AGG - chr6_4:80788789-80788808 None:intergenic 45.0%
TAGACAGCATCTTTCCTCAC+AGG - chr6_4:80788913-80788932 None:intergenic 45.0%
GCTATTGAAATAGACGACCC+AGG + chr6_4:80789300-80789319 Msa0999100:intron 45.0%
ATTGAAATAGACGACCCAGG+TGG + chr6_4:80789303-80789322 Msa0999100:intron 45.0%
TTGAAATAGACGACCCAGGT+GGG + chr6_4:80789304-80789323 Msa0999100:intron 45.0%
CTGAGGTAAGACGAGTAAGA+AGG - chr6_4:80789679-80789698 None:intergenic 45.0%
GCAATTCCGGGATGAAAAGA+AGG - chr6_4:80789823-80789842 None:intergenic 45.0%
TACTCGTGAACTGCAATTCC+GGG - chr6_4:80789835-80789854 None:intergenic 45.0%
!! GTAAACTCGTTTTGGGTAGC+TGG - chr6_4:80789938-80789957 None:intergenic 45.0%
! GTTCGCGAGTAAACTCGTTT+TGG - chr6_4:80789946-80789965 None:intergenic 45.0%
CAGTAACACCGTCACAAAGA+TGG - chr6_4:80790205-80790224 None:intergenic 45.0%
TCTACTAGCCACCCTAACTT+AGG - chr6_4:80790512-80790531 None:intergenic 45.0%
AGGGTGGCTAGTAGAATCTT+TGG + chr6_4:80790517-80790536 Msa0999100:intron 45.0%
GAGCACTTAGTTGGAAACCA+TGG - chr6_4:80790703-80790722 None:intergenic 45.0%
!! TAAGGGTAGGAGCACTTAGT+TGG - chr6_4:80790712-80790731 None:intergenic 45.0%
CTAAGTGCTCCTACCCTTAA+TGG + chr6_4:80790713-80790732 Msa0999100:intron 45.0%
TCAGACTTGAGAGTCTACGT+AGG - chr6_4:80791220-80791239 None:intergenic 45.0%
!! CTGAAAGAGTGCACCAGTTT+TGG + chr6_4:80791382-80791401 Msa0999100:three_prime_UTR 45.0%
!! AAAGAGTGCACCAGTTTTGG+AGG + chr6_4:80791385-80791404 Msa0999100:three_prime_UTR 45.0%
TGCAATCTTGCCTCCAAAAC+TGG - chr6_4:80791398-80791417 None:intergenic 45.0%
!!! AAATGTTTAATTTTTTAAAA+TGG + chr6_4:80790933-80790952 Msa0999100:intron 5.0%
AAAATGCGAAGTGGCCCTAG+TGG + chr6_4:80787334-80787353 Msa0999100:CDS 50.0%
AATTTACCACTGCCCCATGG+CGG - chr6_4:80787406-80787425 None:intergenic 50.0%
TCGAGTTCTGTCCATTCCTC+TGG + chr6_4:80787451-80787470 Msa0999100:CDS 50.0%
CGAGTTCTGTCCATTCCTCT+GGG + chr6_4:80787452-80787471 Msa0999100:CDS 50.0%
TTCTGTCCATTCCTCTGGGT+CGG + chr6_4:80787456-80787475 Msa0999100:CDS 50.0%
! GGCACAGTGTAGGAGTGTAT+TGG + chr6_4:80787624-80787643 Msa0999100:CDS 50.0%
TCGAGTGCGAGACAAGAGTA+TGG + chr6_4:80787757-80787776 Msa0999100:CDS 50.0%
!! TGCTTGTGGTGTTGATTCGG+GGG + chr6_4:80787783-80787802 Msa0999100:CDS 50.0%
GATGAGATGAGGGATAGTCC+TGG + chr6_4:80787856-80787875 Msa0999100:CDS 50.0%
TCAGAACTCTCAGACTCACC+AGG - chr6_4:80787877-80787896 None:intergenic 50.0%
TGGTGAGTCTGAGAGTTCTG+AGG + chr6_4:80787876-80787895 Msa0999100:CDS 50.0%
GGATGATGTCGATAGGGAAG+AGG + chr6_4:80787936-80787955 Msa0999100:CDS 50.0%
TGATGTCGATAGGGAAGAGG+AGG + chr6_4:80787939-80787958 Msa0999100:CDS 50.0%
AAGAGGAGGAGGCTTCGTAT+AGG + chr6_4:80787953-80787972 Msa0999100:CDS 50.0%
!! GAGGCAACAGATGATGGAGT+TGG + chr6_4:80788035-80788054 Msa0999100:CDS 50.0%
TGATGGAGTTGGAGAAGGTG+AGG + chr6_4:80788046-80788065 Msa0999100:CDS 50.0%
! GCAGATTTTGGATAGGGCTC+AGG + chr6_4:80788104-80788123 Msa0999100:CDS 50.0%
CAAGCTAAGGCAAGAGAGAG+AGG - chr6_4:80788689-80788708 None:intergenic 50.0%
! CCCCGTTGATAAGGAAAGCA+TGG - chr6_4:80788780-80788799 None:intergenic 50.0%
CCTGCTTCAATCCAGATACC+AGG - chr6_4:80789146-80789165 None:intergenic 50.0%
CCTGGTATCTGGATTGAAGC+AGG + chr6_4:80789143-80789162 Msa0999100:intron 50.0%
TGAAATAGACGACCCAGGTG+GGG + chr6_4:80789305-80789324 Msa0999100:intron 50.0%
AGATGCACGCAGCCTTAATC+CGG + chr6_4:80789338-80789357 Msa0999100:intron 50.0%
CACAGAGGCTCTCCTTCTAA+AGG + chr6_4:80789431-80789450 Msa0999100:intron 50.0%
GGTAGCTGGGCTTGTAAACT+TGG - chr6_4:80789924-80789943 None:intergenic 50.0%
CTGTTGCGAGTTCCTGAGTT+CGG + chr6_4:80790011-80790030 Msa0999100:intron 50.0%
AGTCTACGTAGGCTCGAGAA+GGG - chr6_4:80791209-80791228 None:intergenic 50.0%
CACCACCAAAACCGCCACTA+GGG - chr6_4:80787351-80787370 None:intergenic 55.0%
ATTCCTCCGACCCAGAGGAA+TGG - chr6_4:80787465-80787484 None:intergenic 55.0%
ATTCCTCTGGGTCGGAGGAA+TGG + chr6_4:80787464-80787483 Msa0999100:CDS 55.0%
TGTCGATAGGGAAGAGGAGG+AGG + chr6_4:80787942-80787961 Msa0999100:CDS 55.0%
GGAGTTGGAGAAGGTGAGGT+TGG + chr6_4:80788050-80788069 Msa0999100:CDS 55.0%
GATGCACGCAGCCTTAATCC+GGG + chr6_4:80789339-80789358 Msa0999100:intron 55.0%
GCAGCCTTAATCCGGGAAGT+CGG + chr6_4:80789346-80789365 Msa0999100:intron 55.0%
CAGCCTTAATCCGGGAAGTC+GGG + chr6_4:80789347-80789366 Msa0999100:intron 55.0%
GAAACAACCTCCCGACTTCC+CGG - chr6_4:80789360-80789379 None:intergenic 55.0%
GTGATGCAGCACTGCGTTTC+GGG - chr6_4:80790061-80790080 None:intergenic 55.0%
GGTGATGCAGCACTGCGTTT+CGG - chr6_4:80790062-80790081 None:intergenic 55.0%
AACTCGTCGGAGACTAACGC+TGG - chr6_4:80790238-80790257 None:intergenic 55.0%
GAGTCTACGTAGGCTCGAGA+AGG - chr6_4:80791210-80791229 None:intergenic 55.0%
ATGCGAAGTGGCCCTAGTGG+CGG + chr6_4:80787337-80787356 Msa0999100:CDS 60.0%
! AGTGGCCCTAGTGGCGGTTT+TGG + chr6_4:80787343-80787362 Msa0999100:CDS 60.0%
CCACCACCAAAACCGCCACT+AGG - chr6_4:80787352-80787371 None:intergenic 60.0%
!! CCTAGTGGCGGTTTTGGTGG+TGG + chr6_4:80787349-80787368 Msa0999100:CDS 60.0%
!!! AGTGGCGGTTTTGGTGGTGG+TGG + chr6_4:80787352-80787371 Msa0999100:CDS 60.0%
TGTCCATTCCTCTGGGTCGG+AGG + chr6_4:80787459-80787478 Msa0999100:CDS 60.0%
TGTCCATTCCTCCGACCCAG+AGG - chr6_4:80787470-80787489 None:intergenic 60.0%
CTACCCTCTAGACCCCACCT+GGG - chr6_4:80789320-80789339 None:intergenic 60.0%
TCTACCCTCTAGACCCCACC+TGG - chr6_4:80789321-80789340 None:intergenic 60.0%
CCTCCCGACTTCCCGGATTA+AGG - chr6_4:80789353-80789372 None:intergenic 60.0%
CCTTAATCCGGGAAGTCGGG+AGG + chr6_4:80789350-80789369 Msa0999100:intron 60.0%
!! GGCCCTAGTGGCGGTTTTGG+TGG + chr6_4:80787346-80787365 Msa0999100:CDS 65.0%
!!! GGCGGTTTTGGTGGTGGTGG+TGG + chr6_4:80787355-80787374 Msa0999100:CDS 65.0%
TTGTTGCCGCCATGGGGCAG+TGG + chr6_4:80787397-80787416 Msa0999100:CDS 65.0%
ACGACCCAGGTGGGGTCTAG+AGG + chr6_4:80789313-80789332 Msa0999100:intron 65.0%
CGACCCAGGTGGGGTCTAGA+GGG + chr6_4:80789314-80789333 Msa0999100:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 80786919 80791682 80786919 ID=Msa0999100;Name=Msa0999100
chr6_4 mRNA 80786919 80791682 80786919 ID=Msa0999100-mRNA-1;Parent=Msa0999100;Name=Msa0999100-mRNA-1;_AED=0.10;_eAED=0.10;_QI=169|0|0.5|1|0|0.5|2|333|375
chr6_4 exon 80786919 80788215 80786919 ID=Msa0999100-mRNA-1:exon:15369;Parent=Msa0999100-mRNA-1
chr6_4 exon 80791350 80791682 80791350 ID=Msa0999100-mRNA-1:exon:15370;Parent=Msa0999100-mRNA-1
chr6_4 five_prime_UTR 80786919 80787087 80786919 ID=Msa0999100-mRNA-1:five_prime_utr;Parent=Msa0999100-mRNA-1
chr6_4 CDS 80787088 80788215 80787088 ID=Msa0999100-mRNA-1:cds;Parent=Msa0999100-mRNA-1
chr6_4 three_prime_UTR 80791350 80791682 80791350 ID=Msa0999100-mRNA-1:three_prime_utr;Parent=Msa0999100-mRNA-1
Gene Sequence

>Msa0999100

ATGGACGACATGGAAGACGATTCAAGATACCCATCAAAAGGGTACCCTTTACGACGCAAAAACCCTAATCTTCGTCAAAAACACCCAATTCGTAACTTACAATATCAACGCTACAACGATCGCGAAGAAGATTTCGAAGACGATGAACCCGAAGAATTCGATGATTATAACGTAGATGAAGACGGAATTGGAAATGGGTATGTTGGAAATTTTGAAGAAAATGTTGGGTTTGTTAGAAAAAAGAGAAAAATGCGAAGTGGCCCTAGTGGCGGTTTTGGTGGTGGTGGTGGTTCTGTGTCGAATTATGAATTGTTGCCGCCATGGGGCAGTGGTAAATTTTCGAACTTTAATCGTGGTGGAAGTTCGAGTTCTGTCCATTCCTCTGGGTCGGAGGAATGGACAGAACACGCGACGTTTGTGTTGTTAGAGATATGGGGTGAGAAGTTTCTTCAAATTGGGAGGAATAGTTTGAGATCAGAGGAATGGCATGAAGTTGCTGAGAAAGTTTCTGAGGAGTTGAAAGTTGAAAGGAATGTGGCACAGTGTAGGAGTGTATTGGATAAGGTGAAGAGGAGATATAAGAAAGAGAAGAGTAGAATGGATGAGATGGGTTTGGGATTAAGTTCTTGTAAATGGCCATTTTTCAAGAAGATGGATATGTTGATGTCGTCGAGTGCGAGACAAGAGTATGGACTTGCTTGTGGTGTTGATTCGGGGGAGTATGTGTTTATGAATACCAGGGTTTATTTGAATAGGTCGAATGGATTTGATGAGATGAGGGATAGTCCTGGTGAGTCTGAGAGTTCTGAGGATGATGATGATGAGGATGAGGATTTTGATGGTGATGAGGATGATGTCGATAGGGAAGAGGAGGAGGCTTCGTATAGGATTTTGGCTGATTCGATTCAGAAATTTGGGAATATATATGAGAAGATTGAGAATACTAAGAGGCAACAGATGATGGAGTTGGAGAAGGTGAGGTTGGATTTTAATAGGGAATTGGAGTTGCAGAAGAAGCAGATTTTGGATAGGGCTCAGGCTGAAATATCGAAAATACAGGAAGCAGTAGATGATGCTGATGGTGATGATGAGGACACAGACACTTCTGCTGATAATCTCAGTGAATAA

Protein sequence

>Msa0999100

MDDMEDDSRYPSKGYPLRRKNPNLRQKHPIRNLQYQRYNDREEDFEDDEPEEFDDYNVDEDGIGNGYVGNFEENVGFVRKKRKMRSGPSGGFGGGGGSVSNYELLPPWGSGKFSNFNRGGSSSSVHSSGSEEWTEHATFVLLEIWGEKFLQIGRNSLRSEEWHEVAEKVSEELKVERNVAQCRSVLDKVKRRYKKEKSRMDEMGLGLSSCKWPFFKKMDMLMSSSARQEYGLACGVDSGEYVFMNTRVYLNRSNGFDEMRDSPGESESSEDDDDEDEDFDGDEDDVDREEEEASYRILADSIQKFGNIYEKIENTKRQQMMELEKVRLDFNRELELQKKQILDRAQAEISKIQEAVDDADGDDEDTDTSADNLSE*