AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0962310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0962310 MtrunA17_Chr8g0386311 75.676 37 9 0 5 41 44 80 2.07e-11 56.6
Msa0962310 MtrunA17_Chr3g0132111 69.231 39 12 0 3 41 41 79 6.32e-11 55.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 83 sgRNAs with CRISPR-Local

Find 586 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGTTGAGTTTGGGGATA+TGG 0.204068 6_3:-85514417 Msa0962310:five_prime_UTR
ATATAAAATGTACATCTAAT+TGG 0.219754 6_3:+85507863 None:intergenic
CAATGGGATATGGTTGAGTT+TGG 0.233721 6_3:-85514425 Msa0962310:five_prime_UTR
TCATAGACCGTTGATGTTTC+AGG 0.247801 6_3:+85510125 None:intergenic
GTATTGGATGTGGTTGAGTC+TGG 0.269227 6_3:-85516775 Msa0962310:five_prime_UTR
TAGGAAGAAGAGAAAGAAAA+AGG 0.281810 6_3:+85519468 None:intergenic
TATCTGATGTGGTTTAGTTT+GGG 0.288954 6_3:-85509033 Msa0962310:three_prime_UTR
TCAAAACCATTTGGTGGGTT+TGG 0.293130 6_3:-85515339 Msa0962310:five_prime_UTR
GTATCTGATGTGGTTTAGTT+TGG 0.306306 6_3:-85509034 Msa0962310:three_prime_UTR
TACAGACGCTCCACCTTATA+TGG 0.314969 6_3:+85507903 None:intergenic
GCAACTTTCAAAGTCATTGA+TGG 0.343752 6_3:-85510150 Msa0962310:CDS
GTGGTGATTGTGTTCTTAAA+TGG 0.344282 6_3:+85519341 None:intergenic
ACATATTGGACTTCAATTCT+TGG 0.348432 6_3:-85515238 Msa0962310:five_prime_UTR
GTACCTTCATGGCTGCTATA+AGG 0.356886 6_3:+85515186 None:intergenic
TGTTTGTTAGCAATGGGATA+TGG 0.369203 6_3:-85514435 Msa0962310:intron
AATGGGATATGGTTGAGTTT+GGG 0.371906 6_3:-85514424 Msa0962310:five_prime_UTR
AATTCATCATCAAAACCATT+TGG 0.420979 6_3:-85515348 Msa0962310:five_prime_UTR
TTGAAAGTTGCAATGATGTC+AGG 0.435539 6_3:+85510162 None:intergenic
TGCAGGGAATACAAAAGAAA+AGG 0.439924 6_3:-85508084 Msa0962310:intron
TATATAGAGGTGGAAGGAAA+TGG 0.445027 6_3:-85508023 Msa0962310:three_prime_UTR
TATTGGATGTGGTTGAGTCT+GGG 0.445372 6_3:-85516774 Msa0962310:five_prime_UTR
AACTAACAGACAGAACATAT+TGG 0.455086 6_3:-85515252 Msa0962310:five_prime_UTR
CACCATCACATGTAAGGAAT+GGG 0.470717 6_3:+85517476 None:intergenic
TTTGCAGTTAATATCCTTGA+GGG 0.481204 6_3:-85509481 Msa0962310:intron
AATACCTGCTCTGATGTTGA+AGG 0.486227 6_3:+85517384 None:intergenic
TATTTCAGTGACGTATCAAA+TGG 0.486620 6_3:-85513174 Msa0962310:intron
CCACCATCACATGTAAGGAA+TGG 0.487274 6_3:+85517475 None:intergenic
CATCATCAAAACCATTTGGT+GGG 0.490956 6_3:-85515344 Msa0962310:five_prime_UTR
AGCCGCCACCATCACATGTA+AGG 0.491245 6_3:+85517470 None:intergenic
CAATTTCTAACTGATTCAAA+TGG 0.497571 6_3:-85510065 Msa0962310:intron
TATTGGACTTCAATTCTTGG+AGG 0.497740 6_3:-85515235 Msa0962310:five_prime_UTR
ATCTGATGTGGTTTAGTTTG+GGG 0.498692 6_3:-85509032 Msa0962310:three_prime_UTR
CATATACGCTATACTACCTT+CGG 0.498868 6_3:+85515287 None:intergenic
CTGTGCTTAGTCTCTGATGT+TGG 0.504230 6_3:+85517418 None:intergenic
GGTCGAACGGTTGGCATGCA+AGG 0.509562 6_3:+85519365 None:intergenic
GTACAGTATGTGAATCTAGC+TGG 0.510612 6_3:+85514845 None:intergenic
CAAGGCTACAACTCTGATGT+TGG 0.514552 6_3:+85519383 None:intergenic
GATAACAGACCTGTCAAAAG+AGG 0.517452 6_3:+85513109 None:intergenic
AAATGGACGGATGGCTACGA+TGG 0.519451 6_3:-85513157 Msa0962310:five_prime_UTR
TCATCATCAAAACCATTTGG+TGG 0.520783 6_3:-85515345 Msa0962310:five_prime_UTR
ATGGGATATGGTTGAGTTTG+GGG 0.521966 6_3:-85514423 Msa0962310:five_prime_UTR
TACAGTATGTGAATCTAGCT+GGG 0.522078 6_3:+85514846 None:intergenic
GGAGGAAATTCACAAAGATA+AGG 0.522244 6_3:-85515217 Msa0962310:five_prime_UTR
TTGTTTGTTAGTATTGGATG+TGG 0.532339 6_3:-85516785 Msa0962310:intron
GTTAAATGAGAATGAATGTA+TGG 0.538944 6_3:+85519442 None:intergenic
TTTCTGCTGTTAGGAAGTGA+TGG 0.542285 6_3:+85507825 None:intergenic
GGCCCATTCCTTACATGTGA+TGG 0.543482 6_3:-85517478 Msa0962310:five_prime_UTR
GTGAATCTAGGCGAGGGAAG+TGG 0.550537 6_3:+85509447 None:intergenic
TTAAATGGAGGTCGAACGGT+TGG 0.553776 6_3:+85519356 None:intergenic
AACGTACAGTAGGTGAATCT+AGG 0.553854 6_3:+85509435 None:intergenic
ATCGCCTTCAACATCAGAGC+AGG 0.555332 6_3:-85517388 Msa0962310:intron
TCAATGACAAAGCTATATAG+AGG 0.556884 6_3:-85508036 Msa0962310:three_prime_UTR
TTCTTTGTCAGTATCTGATG+TGG 0.581703 6_3:-85509044 Msa0962310:intron
TTGCCTTATAGCAGCCATGA+AGG 0.584074 6_3:-85515189 Msa0962310:intron
ATTGGATGTGGTTGAGTCTG+GGG 0.586084 6_3:-85516773 Msa0962310:five_prime_UTR
GTTCTTAAATGGAGGTCGAA+CGG 0.594236 6_3:+85519352 None:intergenic
CCATTCCTTACATGTGATGG+TGG 0.603991 6_3:-85517475 Msa0962310:five_prime_UTR
TGGTTGTCTCATCACCCTCA+AGG 0.606403 6_3:+85509467 None:intergenic
TGACGTATCAAATGGACGGA+TGG 0.606896 6_3:-85513166 Msa0962310:five_prime_UTR
CAAAGCTATATAGAGGTGGA+AGG 0.610830 6_3:-85508029 Msa0962310:three_prime_UTR
TTCCTTACATGTGATGGTGG+CGG 0.615743 6_3:-85517472 Msa0962310:five_prime_UTR
CAGTAGGTGAATCTAGGCGA+GGG 0.620624 6_3:+85509441 None:intergenic
GAGAATGAATGTATGGCTGT+AGG 0.622146 6_3:+85519449 None:intergenic
GTGATTGTGTTCTTAAATGG+AGG 0.624650 6_3:+85519344 None:intergenic
AATGGACGGATGGCTACGAT+GGG 0.631048 6_3:-85513156 Msa0962310:five_prime_UTR
CTAGAAGCAACAGTTCTGCA+AGG 0.631238 6_3:-85509004 Msa0962310:three_prime_UTR
CTAGAAGCAACAGTTCTGCA+AGG 0.631238 6_3:-85516745 Msa0962310:five_prime_UTR
TCTACAAAACTCACATGCAG+AGG 0.631811 6_3:+85518971 None:intergenic
GAAGAAGCATTAGTTCAGCA+AGG 0.633978 6_3:-85514395 Msa0962310:five_prime_UTR
TTGAAGAAGCATATGACCGA+AGG 0.637274 6_3:-85515303 Msa0962310:five_prime_UTR
TCAGTGACGTATCAAATGGA+CGG 0.638041 6_3:-85513170 Msa0962310:intron
AACGCCACCGTGGATCGAGA+TGG 0.639819 6_3:-85519266 Msa0962310:intron
GTTAGACATGATGAAAACAA+AGG 0.640821 6_3:-85508973 Msa0962310:intron
GTTAGACATGATGAAAACAA+AGG 0.640821 6_3:-85516714 Msa0962310:five_prime_UTR
ATGACAAAGCTATATAGAGG+TGG 0.642666 6_3:-85508033 Msa0962310:three_prime_UTR
ACAGTAGGTGAATCTAGGCG+AGG 0.644049 6_3:+85509440 None:intergenic
TCTAGATGAGAGAAGAACAA+TGG 0.651972 6_3:+85519319 None:intergenic
GATGGTGCCTGAAACATCAA+CGG 0.665675 6_3:-85510132 Msa0962310:CDS
ACAGTATGTGAATCTAGCTG+GGG 0.667908 6_3:+85514847 None:intergenic
AGATGAGAGAAGAACAATGG+TGG 0.678134 6_3:+85519322 None:intergenic
TTTACCATCTCGATCCACGG+TGG 0.692441 6_3:+85519262 None:intergenic
CAGTATGTGAATCTAGCTGG+GGG 0.695680 6_3:+85514848 None:intergenic
ACAGACATGCAACGCCACCG+TGG 0.701188 6_3:-85519276 Msa0962310:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAATATTTTTTATAAAT+AGG - chr6_3:85515216-85515235 Msa0962310:five_prime_UTR 0.0%
!!! TAAAAATATTATTTAAAATT+TGG + chr6_3:85518082-85518101 None:intergenic 0.0%
!!! TTTAAATAATATTTTTAATT+AGG - chr6_3:85518085-85518104 Msa0962310:intron 0.0%
!! ATGAAAAATACATATAAATA+TGG + chr6_3:85508601-85508620 None:intergenic 10.0%
!!! TTTTTTTTTATTTTTATTCC+TGG - chr6_3:85508937-85508956 Msa0962310:intron 10.0%
!! AGAAGAAAATTAAAAATATA+TGG - chr6_3:85509386-85509405 Msa0962310:intron 10.0%
!! ATTAAATTAGTAATTGTATT+CGG + chr6_3:85509609-85509628 None:intergenic 10.0%
!!! AATTTAACAACATTATTTTA+AGG - chr6_3:85510051-85510070 Msa0962310:intron 10.0%
!!! TAGAAATATTATTTAAAATC+AGG + chr6_3:85512676-85512695 None:intergenic 10.0%
!! AAAATAAATTAATCGATAAT+AGG - chr6_3:85514706-85514725 Msa0962310:intron 10.0%
!!! ACAAAATTTTCAATAAAATA+AGG - chr6_3:85515272-85515291 Msa0962310:five_prime_UTR 10.0%
!!! CAAATTTAGAATTAAAAAAA+TGG + chr6_3:85516064-85516083 None:intergenic 10.0%
!! ATAAACAAAATATAAACTAA+TGG + chr6_3:85516112-85516131 None:intergenic 10.0%
!!! TGTTATTATTATTATTTTCT+TGG - chr6_3:85516173-85516192 Msa0962310:intron 10.0%
!!! GTTATTATTATTATTTTCTT+GGG - chr6_3:85516174-85516193 Msa0962310:intron 10.0%
!! GTTAATATAATTTAACAAAA+AGG + chr6_3:85516832-85516851 None:intergenic 10.0%
!!! GTTTATCATTTTTTTTTTAT+TGG - chr6_3:85516965-85516984 Msa0962310:intron 10.0%
!!! TGTCATTTTATAATAAAAAT+TGG - chr6_3:85518757-85518776 Msa0962310:intron 10.0%
!!! TGTTTAAAATAATGTTTTTT+TGG - chr6_3:85519398-85519417 Msa0962310:five_prime_UTR 10.0%
!!! ACAATTTTTTTATCTGTATT+TGG - chr6_3:85508123-85508142 Msa0962310:intron 15.0%
!! TTGATCTATGAAATTTAAAT+TGG - chr6_3:85508416-85508435 Msa0962310:intron 15.0%
!! TTCATAAATTTGTATTAATG+TGG - chr6_3:85508558-85508577 Msa0962310:intron 15.0%
!!! AATACTAACATTTTTAGTAA+AGG + chr6_3:85508711-85508730 None:intergenic 15.0%
!!! ATACTTAATTTGTTGTTTTA+TGG - chr6_3:85509062-85509081 Msa0962310:intron 15.0%
!! GGTTATATTTATTACTAATA+GGG + chr6_3:85509588-85509607 None:intergenic 15.0%
!!! TAAAAACATCACATTTTAAA+TGG + chr6_3:85510005-85510024 None:intergenic 15.0%
!! ATTGAAATTATGTTTCAAAT+TGG - chr6_3:85510215-85510234 Msa0962310:intron 15.0%
!! TCATTAAGATATTATAACAA+GGG - chr6_3:85510924-85510943 Msa0962310:intron 15.0%
!!! CTTTTTAACTTATCATTTAA+TGG + chr6_3:85510996-85511015 None:intergenic 15.0%
!!! TAAAAAATCATGTCAATTTT+AGG + chr6_3:85511521-85511540 None:intergenic 15.0%
!!! ATATGAATCAATTTGTTTTT+AGG + chr6_3:85512204-85512223 None:intergenic 15.0%
!! AAGAATAAACTTGATTAAAA+TGG + chr6_3:85512515-85512534 None:intergenic 15.0%
!!! AAAACGTAATATTGTTTTAT+TGG + chr6_3:85513226-85513245 None:intergenic 15.0%
!! AAACACGTAATTTAAAAAAA+GGG + chr6_3:85513477-85513496 None:intergenic 15.0%
!!! TAATGATTTTGTAAAAACAA+TGG - chr6_3:85513573-85513592 Msa0962310:intron 15.0%
!!! TAAAAACAATGGTTTTTATT+TGG - chr6_3:85513584-85513603 Msa0962310:intron 15.0%
!! TTCTTTATAATAAGTATCAT+TGG - chr6_3:85513821-85513840 Msa0962310:intron 15.0%
!! AAAATATCCTTCATATAAAA+GGG + chr6_3:85513948-85513967 None:intergenic 15.0%
!! AAAAATATCCTTCATATAAA+AGG + chr6_3:85513949-85513968 None:intergenic 15.0%
!! ATTAATAGATATAAATGAGA+GGG + chr6_3:85514587-85514606 None:intergenic 15.0%
!! ATTAATAGTTATACCAATTT+AGG + chr6_3:85514643-85514662 None:intergenic 15.0%
!! GTGATAAATAGTTAAAAAAA+TGG + chr6_3:85514679-85514698 None:intergenic 15.0%
!!! TGAAAATAATTTGTAGTAAA+TGG + chr6_3:85515012-85515031 None:intergenic 15.0%
!!! TTTACTACAAATTATTTTCA+AGG - chr6_3:85515012-85515031 Msa0962310:intron 15.0%
!! AATTATTATGAGTAAAAATG+TGG + chr6_3:85515298-85515317 None:intergenic 15.0%
!!! CAGTTAATATTTTTATTTGT+GGG + chr6_3:85515785-85515804 None:intergenic 15.0%
!!! ATTAATCACAATTTTTTTTC+TGG - chr6_3:85516003-85516022 Msa0962310:intron 15.0%
!! ATTATTATTTCCATTTGAAT+CGG + chr6_3:85516424-85516443 None:intergenic 15.0%
!!! GTTTTAATTCTTATCAAATT+TGG + chr6_3:85516522-85516541 None:intergenic 15.0%
!! TGATAAGAATTAAAACTTTA+AGG - chr6_3:85516526-85516545 Msa0962310:intron 15.0%
!!! TATCATTTTTTTTTTATTGG+TGG - chr6_3:85516968-85516987 Msa0962310:intron 15.0%
!! TTTGTTTGTTTATTTGATAT+TGG + chr6_3:85517533-85517552 None:intergenic 15.0%
!!! ATGTTTTTCATTTAGAAATT+CGG + chr6_3:85518399-85518418 None:intergenic 15.0%
!! ATATTATTAGTAATCACATT+AGG + chr6_3:85518427-85518446 None:intergenic 15.0%
!!! ACTAATAATATGACAAATTT+TGG - chr6_3:85518436-85518455 Msa0962310:intron 15.0%
!!! TTTGAAGTAAAAAAACATAT+GGG + chr6_3:85518562-85518581 None:intergenic 15.0%
!!! TTTTGAAGTAAAAAAACATA+TGG + chr6_3:85518563-85518582 None:intergenic 15.0%
!! AGAATTAACATACATTAAAA+TGG - chr6_3:85519020-85519039 Msa0962310:five_prime_UTR 15.0%
!! ATATAAAATGTACATCTAAT+TGG + chr6_3:85519464-85519483 None:intergenic 15.0%
!!! TTTTTTTATCTGTATTTGGA+TGG - chr6_3:85508127-85508146 Msa0962310:intron 20.0%
!!! TTTTTTATCTGTATTTGGAT+GGG - chr6_3:85508128-85508147 Msa0962310:intron 20.0%
!!! GTTTATATATTTTCGAGTTA+GGG - chr6_3:85508187-85508206 Msa0962310:intron 20.0%
!!! AATGTCTCAATTTTTAGTAA+AGG - chr6_3:85508528-85508547 Msa0962310:intron 20.0%
!! TAAATTTGTATTAATGTGGT+TGG - chr6_3:85508562-85508581 Msa0962310:intron 20.0%
!!! TATTTTCATTTGTATCTCTT+TGG - chr6_3:85508999-85509018 Msa0962310:three_prime_UTR 20.0%
!!! TTTTATGGACTAATAGAAAA+AGG - chr6_3:85509077-85509096 Msa0962310:intron 20.0%
!!! TTTATGGACTAATAGAAAAA+GGG - chr6_3:85509078-85509097 Msa0962310:intron 20.0%
!! AATATAGAGCTACATATATA+TGG - chr6_3:85509153-85509172 Msa0962310:intron 20.0%
!!! CATTAATTTGATTTTTGAAG+TGG + chr6_3:85509220-85509239 None:intergenic 20.0%
!!! CTGCTATTTCATATTATTAT+TGG + chr6_3:85509489-85509508 None:intergenic 20.0%
!! CGGTTATATTTATTACTAAT+AGG + chr6_3:85509589-85509608 None:intergenic 20.0%
!! TTTGTTCACAAAATTGAATT+TGG - chr6_3:85509671-85509690 Msa0962310:intron 20.0%
!!! ACATAATTTCAATTTTCATC+AGG + chr6_3:85510208-85510227 None:intergenic 20.0%
!! GAATAGTATTATTCATCATT+TGG - chr6_3:85510275-85510294 Msa0962310:intron 20.0%
!! TAACATTTACAAATGATGTT+GGG + chr6_3:85510306-85510325 None:intergenic 20.0%
!! ATTTGTAAATGTTACATGTT+GGG - chr6_3:85510312-85510331 Msa0962310:intron 20.0%
!!! ACATTTTAGAAGTATATACA+TGG + chr6_3:85510343-85510362 None:intergenic 20.0%
!! ATAGTTTATTCTATGACAAT+TGG + chr6_3:85510388-85510407 None:intergenic 20.0%
!! AGATACAATAAAACAGTAAA+AGG + chr6_3:85510454-85510473 None:intergenic 20.0%
!! TTATCTAATAAGAGAAAAAG+AGG + chr6_3:85510664-85510683 None:intergenic 20.0%
!!! TTTCTCAATTCTTTTAGAAA+GGG + chr6_3:85510697-85510716 None:intergenic 20.0%
!! AATATGTTTAAAGAATGCAT+AGG - chr6_3:85510740-85510759 Msa0962310:intron 20.0%
!! ATATGTTTAAAGAATGCATA+GGG - chr6_3:85510741-85510760 Msa0962310:intron 20.0%
!! TATGGAAAAAAGACTTTATT+AGG + chr6_3:85510776-85510795 None:intergenic 20.0%
!!! CTTGTTATAATATCTTAATG+AGG + chr6_3:85510925-85510944 None:intergenic 20.0%
!! CTCATTAAGATATTATAACA+AGG - chr6_3:85510923-85510942 Msa0962310:intron 20.0%
!!! AGTTTTAAACCTAATTTCTT+GGG - chr6_3:85511147-85511166 Msa0962310:intron 20.0%
!!! AAAGATATGCATAAGTTTTA+GGG + chr6_3:85511560-85511579 None:intergenic 20.0%
!!! TGCATAAGTATTTTTTGTTA+TGG + chr6_3:85511583-85511602 None:intergenic 20.0%
!! AATACTTATGCATATCTTAT+TGG - chr6_3:85511591-85511610 Msa0962310:intron 20.0%
!! TTATAAATCAAAGTAGAAGA+TGG + chr6_3:85511686-85511705 None:intergenic 20.0%
!! TAAAAATAATAGTACCTTCA+TGG + chr6_3:85512152-85512171 None:intergenic 20.0%
!!! TTAGATTGTCTTTAATCTTT+TGG - chr6_3:85512174-85512193 Msa0962310:intron 20.0%
!! AAAACAGTATTCACTAAATA+AGG + chr6_3:85512797-85512816 None:intergenic 20.0%
!! AATATATTGAAAGAATGCAT+AGG - chr6_3:85513080-85513099 Msa0962310:intron 20.0%
!! ATATATTGAAAGAATGCATA+GGG - chr6_3:85513081-85513100 Msa0962310:intron 20.0%
!! TAAGTTATAACATCTCAATA+AGG + chr6_3:85513269-85513288 None:intergenic 20.0%
!! GAAACACGTAATTTAAAAAA+AGG + chr6_3:85513478-85513497 None:intergenic 20.0%
!!! ATACACTTTTAAGTGATAAT+GGG - chr6_3:85513505-85513524 Msa0962310:intron 20.0%
!! ATATCTTATACTATTCGAAA+AGG + chr6_3:85513869-85513888 None:intergenic 20.0%
!! AAACTATCCTTCATATAAAA+GGG + chr6_3:85513997-85514016 None:intergenic 20.0%
!! AAAACTATCCTTCATATAAA+AGG + chr6_3:85513998-85514017 None:intergenic 20.0%
!! AAACAAGTCTATATACAATA+AGG + chr6_3:85514483-85514502 None:intergenic 20.0%
!!! TTATTGTATATAGACTTGTT+TGG - chr6_3:85514482-85514501 Msa0962310:intron 20.0%
!!! TATTGTATATAGACTTGTTT+GGG - chr6_3:85514483-85514502 Msa0962310:intron 20.0%
!! GATTAATAGATATAAATGAG+AGG + chr6_3:85514588-85514607 None:intergenic 20.0%
!!! ATTTATGTTGCTATTTGAAA+AGG - chr6_3:85515045-85515064 Msa0962310:intron 20.0%
!!! TTATCCTTGTGTATTTTTTT+AGG - chr6_3:85515323-85515342 Msa0962310:five_prime_UTR 20.0%
!!! TATCCTTGTGTATTTTTTTA+GGG - chr6_3:85515324-85515343 Msa0962310:five_prime_UTR 20.0%
!! AAAAAAGAAAGAAAAGAGAA+GGG + chr6_3:85515509-85515528 None:intergenic 20.0%
!! AAAAAAAGAAAGAAAAGAGA+AGG + chr6_3:85515510-85515529 None:intergenic 20.0%
!!! TAAAGATAAGAGTTTTATAG+AGG + chr6_3:85515640-85515659 None:intergenic 20.0%
!!! CCAGTTAATATTTTTATTTG+TGG + chr6_3:85515786-85515805 None:intergenic 20.0%
!! CCACAAATAAAAATATTAAC+TGG - chr6_3:85515783-85515802 Msa0962310:intron 20.0%
!! AATGTACATATAAAAGAAGA+TGG + chr6_3:85515965-85515984 None:intergenic 20.0%
!!! ATATTTGTGATTTAGCATTT+TGG - chr6_3:85516222-85516241 Msa0962310:intron 20.0%
!! AAAACAAAATTAACACTCAA+AGG + chr6_3:85516351-85516370 None:intergenic 20.0%
!! TTATTATTTCCATTTGAATC+GGG + chr6_3:85516423-85516442 None:intergenic 20.0%
!! ACATAATAATCAAATGCATA+AGG + chr6_3:85516557-85516576 None:intergenic 20.0%
!! TTATGCATTTGATTATTATG+TGG - chr6_3:85516556-85516575 Msa0962310:intron 20.0%
!!! CATTTTTGGATATAATTTAC+TGG - chr6_3:85516700-85516719 Msa0962310:intron 20.0%
!! GTTAAATTATATTAACACCT+TGG - chr6_3:85516836-85516855 Msa0962310:intron 20.0%
!! TGGATTACTTAATTATGATT+TGG - chr6_3:85517309-85517328 Msa0962310:intron 20.0%
!! TTTAGTTATTTGTCAACAAA+GGG + chr6_3:85517568-85517587 None:intergenic 20.0%
!!! ATTAGTCTATGAGTATAATT+GGG + chr6_3:85517713-85517732 None:intergenic 20.0%
!!! AATTAGTCTATGAGTATAAT+TGG + chr6_3:85517714-85517733 None:intergenic 20.0%
!! TATACTCATAGACTAATTTA+TGG - chr6_3:85517716-85517735 Msa0962310:intron 20.0%
!! AGATACAATAAAACAGTAAA+AGG + chr6_3:85510454-85510473 None:intergenic 20.0%
!! AGAGTTAAAAGATTAAATTC+AGG + chr6_3:85518586-85518605 None:intergenic 20.0%
!!! TACATGTAATTTAGAGTTAA+AGG + chr6_3:85518633-85518652 None:intergenic 20.0%
!!! TAAATTACATGTACCTTTTT+TGG - chr6_3:85518640-85518659 Msa0962310:intron 20.0%
!!! AAGAAAGTAACATTTTCTAA+GGG + chr6_3:85518717-85518736 None:intergenic 20.0%
!!! AAAGAAAGTAACATTTTCTA+AGG + chr6_3:85518718-85518737 None:intergenic 20.0%
!!! TGTTACTTTCTTTTTAAATG+TGG - chr6_3:85518725-85518744 Msa0962310:intron 20.0%
!!! AATATTTTTTGTATTCAGCT+GGG + chr6_3:85518871-85518890 None:intergenic 20.0%
!!! TAATATTTTTTGTATTCAGC+TGG + chr6_3:85518872-85518891 None:intergenic 20.0%
!! AAAATATTATAGATTGCTTC+AGG - chr6_3:85518883-85518902 Msa0962310:intron 20.0%
!!! TTCTAATATACATCCTTTTT+AGG + chr6_3:85519004-85519023 None:intergenic 20.0%
!! TAATATACATCCTTCTAATT+AGG + chr6_3:85519047-85519066 None:intergenic 20.0%
!! GGATGTATATTAGAAATATA+AGG - chr6_3:85519055-85519074 Msa0962310:intron 20.0%
! GTTAAATGAGAATGAATGTA+TGG + chr6_3:85507885-85507904 None:intergenic 25.0%
! ACTCGAAAATATATAAACGT+TGG + chr6_3:85508185-85508204 None:intergenic 25.0%
!!! CGTTTATATATTTTCGAGTT+AGG - chr6_3:85508186-85508205 Msa0962310:intron 25.0%
!! TTTTGAACATCTATGTATCT+TGG - chr6_3:85508386-85508405 Msa0962310:intron 25.0%
! AATCTTAAGTGTATGCTAAA+TGG - chr6_3:85508450-85508469 Msa0962310:intron 25.0%
! ATCTTAAGTGTATGCTAAAT+GGG - chr6_3:85508451-85508470 Msa0962310:intron 25.0%
! TACTAAAAATTGAGACATTG+AGG + chr6_3:85508527-85508546 None:intergenic 25.0%
! ATTAGATCAGTAAATTGACA+AGG + chr6_3:85508745-85508764 None:intergenic 25.0%
!!! GAATTATTTTATAGCAGTAG+CGG + chr6_3:85508788-85508807 None:intergenic 25.0%
! TATCACGATAAAGTATGAAA+TGG + chr6_3:85508850-85508869 None:intergenic 25.0%
! ATTTGACAGAAAAATAAAGC+AGG - chr6_3:85509122-85509141 Msa0962310:intron 25.0%
!! ATGTAGCTCTATATTTAACA+TGG + chr6_3:85509148-85509167 None:intergenic 25.0%
! ATATGGAAATAATTCTGTCA+TGG - chr6_3:85509170-85509189 Msa0962310:intron 25.0%
!! TCTACATCATTTGTATTGAT+TGG + chr6_3:85509369-85509388 None:intergenic 25.0%
!!! TTAAAGCGAGTTGATTTAAA+TGG + chr6_3:85509558-85509577 None:intergenic 25.0%
! ATTTAATGACCTAACATTAG+TGG - chr6_3:85509622-85509641 Msa0962310:intron 25.0%
!!! TATGTGAAGTTATTTTACGA+TGG - chr6_3:85510087-85510106 Msa0962310:CDS 25.0%
! AACAATGAGGTCTTAAAAAT+AGG + chr6_3:85510117-85510136 None:intergenic 25.0%
! AATAAAAGTGATGAACAATG+AGG + chr6_3:85510130-85510149 None:intergenic 25.0%
!!! ACTTTTATTTGCTACATGTT+GGG - chr6_3:85510141-85510160 Msa0962310:CDS 25.0%
!!! ACATTTTAGAAGTATAGACT+TGG + chr6_3:85510172-85510191 None:intergenic 25.0%
! TATTCGTATCTAGATTTCAT+CGG + chr6_3:85510260-85510279 None:intergenic 25.0%
! GTAACATTTACAAATGATGT+TGG + chr6_3:85510307-85510326 None:intergenic 25.0%
! CATTTGTAAATGTTACATGT+TGG - chr6_3:85510311-85510330 Msa0962310:intron 25.0%
!! GATTGTTTGTTTGTTAGTAT+TGG - chr6_3:85510533-85510552 Msa0962310:intron 25.0%
!!! AAAGAGGTATTAGATAGAAA+AGG + chr6_3:85510648-85510667 None:intergenic 25.0%
!!! CTTTCTCAATTCTTTTAGAA+AGG + chr6_3:85510698-85510717 None:intergenic 25.0%
!!! CTTCGAAATTTTAAAAAGCT+AGG - chr6_3:85510810-85510829 Msa0962310:intron 25.0%
! GTTATAATATCTTAATGAGG+AGG + chr6_3:85510922-85510941 None:intergenic 25.0%
!!! GCAATTGTTGTTTTTAGTTT+TGG - chr6_3:85511022-85511041 Msa0962310:intron 25.0%
! AATAAATTCTAATGCAAAGC+TGG + chr6_3:85511070-85511089 None:intergenic 25.0%
!! CAAGAAATTAGGTTTAAAAC+TGG + chr6_3:85511148-85511167 None:intergenic 25.0%
!!! CAGTTTTAAACCTAATTTCT+TGG - chr6_3:85511146-85511165 Msa0962310:intron 25.0%
! AAATTCAAACCCAAGAAATT+AGG + chr6_3:85511159-85511178 None:intergenic 25.0%
!! TTCTGCTATACATCATTTTA+TGG + chr6_3:85511210-85511229 None:intergenic 25.0%
! ATAAAGAGGTTAATCTGTAT+TGG - chr6_3:85511229-85511248 Msa0962310:intron 25.0%
! ATATTTCATCAGTTGTATTC+TGG + chr6_3:85511406-85511425 None:intergenic 25.0%
! AACTGATGAAATATGATACT+TGG - chr6_3:85511412-85511431 Msa0962310:intron 25.0%
!! GAAAGATATGCATAAGTTTT+AGG + chr6_3:85511561-85511580 None:intergenic 25.0%
! AAGCAAGATATACAAGAAAT+AGG + chr6_3:85511727-85511746 None:intergenic 25.0%
!!! ATAACTTTCAAGTATTGATC+TGG - chr6_3:85511841-85511860 Msa0962310:intron 25.0%
! AATACTTCAAAGAGTTCTTT+AGG + chr6_3:85511879-85511898 None:intergenic 25.0%
! AATTCATCATCAAAACCATT+TGG - chr6_3:85511976-85511995 Msa0962310:intron 25.0%
! TTGAGAGTTTCTTCTAAATT+AGG - chr6_3:85512330-85512349 Msa0962310:intron 25.0%
!! GGAACTTTTTATATTAGTGT+TGG + chr6_3:85512655-85512674 None:intergenic 25.0%
! TCTTATGACAATTTGCATAA+GGG + chr6_3:85512723-85512742 None:intergenic 25.0%
! ATCTTATGACAATTTGCATA+AGG + chr6_3:85512724-85512743 None:intergenic 25.0%
!!! TTTTCTTTGTTTGTTAGCAA+TGG - chr6_3:85512882-85512901 Msa0962310:intron 25.0%
!! TTTCTTTGTTTGTTAGCAAT+GGG - chr6_3:85512883-85512902 Msa0962310:intron 25.0%
! TATATTGAAAGAATGCATAG+GGG - chr6_3:85513082-85513101 Msa0962310:intron 25.0%
! AAAAAGACTTCAATAGGAAA+CGG + chr6_3:85513113-85513132 None:intergenic 25.0%
! TATGTTGTATAGTAAGTATG+TGG + chr6_3:85513136-85513155 None:intergenic 25.0%
!!! CATACACTTTTAAGTGATAA+TGG - chr6_3:85513504-85513523 Msa0962310:intron 25.0%
!!! ACGAAATAAACATGTTTTGA+AGG - chr6_3:85513621-85513640 Msa0962310:intron 25.0%
! ATCTACATATAGCATAGTAA+TGG - chr6_3:85513693-85513712 Msa0962310:intron 25.0%
!! TGATCTTTGTATTTAGTTCA+AGG - chr6_3:85513794-85513813 Msa0962310:intron 25.0%
! TCACCAAATTTATCAAGATT+TGG - chr6_3:85513895-85513914 Msa0962310:intron 25.0%
! CACCAAATTTATCAAGATTT+GGG - chr6_3:85513896-85513915 Msa0962310:intron 25.0%
! TACCCAAATCTTGATAAATT+TGG + chr6_3:85513901-85513920 None:intergenic 25.0%
! CCAAGAAGAATAGATAATAA+CGG + chr6_3:85514044-85514063 None:intergenic 25.0%
! CGTTATTATCTATTCTTCTT+GGG - chr6_3:85514042-85514061 Msa0962310:intron 25.0%
! GTTATTATCTATTCTTCTTG+GGG - chr6_3:85514043-85514062 Msa0962310:intron 25.0%
! TGAAATATCACATCAAATTC+TGG + chr6_3:85514137-85514156 None:intergenic 25.0%
! GGTCAAACATATGATTTATT+AGG + chr6_3:85514250-85514269 None:intergenic 25.0%
!!! CTCTAAGTTTGCTATATATA+TGG + chr6_3:85514271-85514290 None:intergenic 25.0%
!!! AATTGCCATTTATCGTATTT+TGG + chr6_3:85514331-85514350 None:intergenic 25.0%
! TCTATATACAATAAGGAGAA+TGG + chr6_3:85514476-85514495 None:intergenic 25.0%
! TGAGTGCATATAAATCTAAT+GGG + chr6_3:85514828-85514847 None:intergenic 25.0%
! TTGAGTGCATATAAATCTAA+TGG + chr6_3:85514829-85514848 None:intergenic 25.0%
! CTACTTAGAAATAACTGTAT+TGG + chr6_3:85515092-85515111 None:intergenic 25.0%
!!! ATCCTTGTGTATTTTTTTAG+GGG - chr6_3:85515325-85515344 Msa0962310:five_prime_UTR 25.0%
! AATGACATAAAGATAAGCAT+TGG + chr6_3:85515431-85515450 None:intergenic 25.0%
! TCCATAGTGTTAATATTATG+TGG - chr6_3:85515452-85515471 Msa0962310:intron 25.0%
! ACCACATAATATTAACACTA+TGG + chr6_3:85515456-85515475 None:intergenic 25.0%
!!! GGTTTTATTTTAGTATGAAG+CGG + chr6_3:85515595-85515614 None:intergenic 25.0%
!!! ATTTTTTAGACTGTCATTTC+TGG - chr6_3:85515681-85515700 Msa0962310:intron 25.0%
!! TTTTATTGTGAATATCAAGG+AGG + chr6_3:85515762-85515781 None:intergenic 25.0%
!!! GTTCTTTTTCACTATTTTTG+AGG - chr6_3:85515854-85515873 Msa0962310:intron 25.0%
!!! CTATATTTTTACAAGAAACG+AGG + chr6_3:85515933-85515952 None:intergenic 25.0%
! ATGCTAAATCACAAATATAG+AGG + chr6_3:85516220-85516239 None:intergenic 25.0%
! TTCTAATGACATGTTAATGA+AGG - chr6_3:85516313-85516332 Msa0962310:intron 25.0%
! AAGATGATAATCTGATCTAA+AGG - chr6_3:85516447-85516466 Msa0962310:intron 25.0%
!! GTAAATCAACGATTTTTGAA+TGG - chr6_3:85516617-85516636 Msa0962310:intron 25.0%
!! GTTTAGAAAAGTTGCATTTT+TGG - chr6_3:85516686-85516705 Msa0962310:intron 25.0%
!!! TTTTTTATGCAATAAGTCCA+AGG + chr6_3:85516856-85516875 None:intergenic 25.0%
! TTCAAACATACTTTATGACT+TGG - chr6_3:85516918-85516937 Msa0962310:intron 25.0%
!! AAAATGTTAATAGAAAGTGC+AGG + chr6_3:85517084-85517103 None:intergenic 25.0%
!! CAATTTCTAACTGATTCAAA+TGG - chr6_3:85517259-85517278 Msa0962310:intron 25.0%
! CTTTAGTTATTTGTCAACAA+AGG + chr6_3:85517569-85517588 None:intergenic 25.0%
! GCGAAGAAACATAATTAAAA+TGG + chr6_3:85517924-85517943 None:intergenic 25.0%
!! ATGACAATTTTTGTATCATC+TGG - chr6_3:85518035-85518054 Msa0962310:intron 25.0%
! ATAGCTTATTCTATGACAAT+TGG + chr6_3:85518137-85518156 None:intergenic 25.0%
! TTTAGAAATTCGGTAGAAAA+AGG + chr6_3:85518389-85518408 None:intergenic 25.0%
!!! TATGACAAATTTTGGTTTCT+CGG - chr6_3:85518444-85518463 Msa0962310:intron 25.0%
! TTCAAAAAGATTAAGACTTC+AGG + chr6_3:85518538-85518557 None:intergenic 25.0%
!!! GTTCATCAAAAAAGTTTTGA+AGG + chr6_3:85518945-85518964 None:intergenic 25.0%
! TTAAAATGGTCCTAATTAGA+AGG - chr6_3:85519034-85519053 Msa0962310:five_prime_UTR 25.0%
!!! AATGTTTTTTTGGCCATATA+AGG - chr6_3:85519408-85519427 Msa0962310:five_prime_UTR 25.0%
!! AAAGAAAAAGGTATCCGAAA+AGG + chr6_3:85507847-85507866 None:intergenic 30.0%
TAGGAAGAAGAGAAAGAAAA+AGG + chr6_3:85507859-85507878 None:intergenic 30.0%
GTTGATGTTTCTTCAAAAGA+CGG - chr6_3:85508270-85508289 Msa0962310:intron 30.0%
TAAAAATTGAGACATTGAGG+TGG + chr6_3:85508524-85508543 None:intergenic 30.0%
TAATGTGGTTGGATATGTAT+TGG - chr6_3:85508573-85508592 Msa0962310:intron 30.0%
ACATAATACTCCAGGAATAA+AGG + chr6_3:85508885-85508904 None:intergenic 30.0%
GATATCAAACATAATACTCC+AGG + chr6_3:85508893-85508912 None:intergenic 30.0%
!!! TAGTTTTGACAAAATACTCC+AGG + chr6_3:85508958-85508977 None:intergenic 30.0%
ACAAATTGACTGTGTCAAAT+TGG - chr6_3:85509303-85509322 Msa0962310:intron 30.0%
ATTGGTCGAGAATAAGATTA+TGG - chr6_3:85509321-85509340 Msa0962310:intron 30.0%
TTGGTCGAGAATAAGATTAT+GGG - chr6_3:85509322-85509341 Msa0962310:intron 30.0%
GGCAAATAGTAACATATCAA+AGG - chr6_3:85509343-85509362 Msa0962310:intron 30.0%
ATTGGTATTGCCTAAAAATG+CGG + chr6_3:85509471-85509490 None:intergenic 30.0%
ATAGATTGCAATTTGCAAGT+CGG + chr6_3:85509514-85509533 None:intergenic 30.0%
!! GTTCACAATCAACTGATTTT+GGG + chr6_3:85509741-85509760 None:intergenic 30.0%
!! TGTTCACAATCAACTGATTT+TGG + chr6_3:85509742-85509761 None:intergenic 30.0%
GTTGATTGTGAACATGAATA+TGG - chr6_3:85509748-85509767 Msa0962310:intron 30.0%
TTTCAATTCCATACTGATCA+AGG - chr6_3:85509825-85509844 Msa0962310:intron 30.0%
TAAATTGATAGAGACTGTCA+TGG + chr6_3:85510037-85510056 None:intergenic 30.0%
!! CACTTTTATTTGCTACATGT+TGG - chr6_3:85510140-85510159 Msa0962310:CDS 30.0%
TTCTATGACAATTGGCATAA+GGG + chr6_3:85510380-85510399 None:intergenic 30.0%
ATTCTATGACAATTGGCATA+AGG + chr6_3:85510381-85510400 None:intergenic 30.0%
CTACTCATCAAGCTTAATAA+AGG + chr6_3:85510411-85510430 None:intergenic 30.0%
! TTGTTTGTTAGTATTGGATG+TGG - chr6_3:85510539-85510558 Msa0962310:intron 30.0%
GTTAGACATGATGAAAACAA+AGG - chr6_3:85510610-85510629 Msa0962310:intron 30.0%
!! TCAATTCTTTTAGAAAGGGT+TGG + chr6_3:85510693-85510712 None:intergenic 30.0%
GAAGTTGTATAGCAAGTATA+TGG + chr6_3:85510794-85510813 None:intergenic 30.0%
TGATGTATAGCAGAATAAAG+AGG - chr6_3:85511215-85511234 Msa0962310:intron 30.0%
GTTAATCTGTATTGGATAGT+TGG - chr6_3:85511237-85511256 Msa0962310:intron 30.0%
AGTTACATTTGAGCATTCAT+AGG - chr6_3:85511467-85511486 Msa0962310:intron 30.0%
AACTAACAGACAGAACATAT+TGG - chr6_3:85512072-85512091 Msa0962310:intron 30.0%
ACATATTGGACTTCAATTCT+TGG - chr6_3:85512086-85512105 Msa0962310:intron 30.0%
!!! GGTTTCAATTTTTAGTGAGT+TGG + chr6_3:85512237-85512256 None:intergenic 30.0%
!!! CTTGGTTGTTTTTTCACTAT+TGG + chr6_3:85512258-85512277 None:intergenic 30.0%
TGTAAGCAATATAGACTACT+TGG + chr6_3:85512276-85512295 None:intergenic 30.0%
! TTCACATACTGTACGTTTTT+CGG - chr6_3:85512488-85512507 Msa0962310:intron 30.0%
CACATCTATTAGAAATGCTT+AGG + chr6_3:85512568-85512587 None:intergenic 30.0%
AGCATTTCTAATAGATGTGA+TGG - chr6_3:85512569-85512588 Msa0962310:intron 30.0%
GCATTTCTAATAGATGTGAT+GGG - chr6_3:85512570-85512589 Msa0962310:intron 30.0%
! TTGACAACTTTTGTATCTTC+TGG - chr6_3:85512629-85512648 Msa0962310:intron 30.0%
TGTCTAACAACAGAAAAAGA+GGG + chr6_3:85513014-85513033 None:intergenic 30.0%
TTGTCTAACAACAGAAAAAG+AGG + chr6_3:85513015-85513034 None:intergenic 30.0%
ATGTGGAAAAAGACTTCAAT+AGG + chr6_3:85513119-85513138 None:intergenic 30.0%
GTTATAACATCTCAATAAGG+AGG + chr6_3:85513266-85513285 None:intergenic 30.0%
TTTACCTTTGACTATGTGAT+AGG - chr6_3:85513403-85513422 Msa0962310:intron 30.0%
AATTTAAAAAAAGGGCAACC+TGG + chr6_3:85513469-85513488 None:intergenic 30.0%
! CACTTAAAAGTGTATGAGAA+AGG + chr6_3:85513500-85513519 None:intergenic 30.0%
TACAGCATCAACATTGTATT+TGG - chr6_3:85513535-85513554 Msa0962310:intron 30.0%
ACAGCATCAACATTGTATTT+GGG - chr6_3:85513536-85513555 Msa0962310:intron 30.0%
ACATATAGCATAGTAATGGT+AGG - chr6_3:85513697-85513716 Msa0962310:intron 30.0%
CCGTTATTATCTATTCTTCT+TGG - chr6_3:85514041-85514060 Msa0962310:intron 30.0%
GACTAATTATCAAGTAACCT+AGG + chr6_3:85514088-85514107 None:intergenic 30.0%
TATTTCAGTGACGTATCAAA+TGG - chr6_3:85514150-85514169 Msa0962310:intron 30.0%
AGTAGCCAAAATACGATAAA+TGG - chr6_3:85514323-85514342 Msa0962310:intron 30.0%
GGGAAATTAAAATCACTTCA+TGG - chr6_3:85514423-85514442 Msa0962310:five_prime_UTR 30.0%
CTTCATGGATTTACTAATCT+TGG - chr6_3:85514438-85514457 Msa0962310:intron 30.0%
TATACAATAAGGAGAATGGA+GGG + chr6_3:85514472-85514491 None:intergenic 30.0%
ATATACAATAAGGAGAATGG+AGG + chr6_3:85514473-85514492 None:intergenic 30.0%
! GACTTGTTTGGGAAATTTAA+AGG - chr6_3:85514494-85514513 Msa0962310:intron 30.0%
AATATTAATAGTCCGAGTCT+TGG + chr6_3:85514546-85514565 None:intergenic 30.0%
CTAAATTAGCTCACCTAAAT+TGG - chr6_3:85514627-85514646 Msa0962310:intron 30.0%
AAGTCATACTTGATTGAACT+CGG + chr6_3:85514733-85514752 None:intergenic 30.0%
TACCCCTAAAAAAATACACA+AGG + chr6_3:85515330-85515349 None:intergenic 30.0%
TGATGAAAAAAGAAGAGAGA+AGG + chr6_3:85515565-85515584 None:intergenic 30.0%
!!! TTATTTTAGTATGAAGCGGT+CGG + chr6_3:85515591-85515610 None:intergenic 30.0%
!! AGAGTTTTATAGAGGAGAAA+GGG + chr6_3:85515632-85515651 None:intergenic 30.0%
!! AAGAGTTTTATAGAGGAGAA+AGG + chr6_3:85515633-85515652 None:intergenic 30.0%
!!! GGGTTTTATTGTGAATATCA+AGG + chr6_3:85515765-85515784 None:intergenic 30.0%
! ATTTGAAGGAATGTTGTTTG+AGG - chr6_3:85515824-85515843 Msa0962310:intron 30.0%
! GTTTTATCCGATGCAAAAAA+TGG + chr6_3:85515885-85515904 None:intergenic 30.0%
GAGTATCAACAAAGACAATA+TGG + chr6_3:85516396-85516415 None:intergenic 30.0%
TTGGATATAATTTACTGGTG+TGG - chr6_3:85516705-85516724 Msa0962310:intron 30.0%
TGGATATAATTTACTGGTGT+GGG - chr6_3:85516706-85516725 Msa0962310:intron 30.0%
TGGTGGTAAATAAGTCTAAA+TGG - chr6_3:85516985-85517004 Msa0962310:intron 30.0%
! CTGATAACTTTGTTTCTTCT+TGG - chr6_3:85517115-85517134 Msa0962310:intron 30.0%
!! ACTTTGTTTCTTCTTGGTTT+TGG - chr6_3:85517121-85517140 Msa0962310:intron 30.0%
!!! TTTCTTCTTGGTTTTGGATT+AGG - chr6_3:85517127-85517146 Msa0962310:intron 30.0%
!!! TTCTTCTTGGTTTTGGATTA+GGG - chr6_3:85517128-85517147 Msa0962310:intron 30.0%
ATTTACGAACTTCTTCACTA+TGG - chr6_3:85517284-85517303 Msa0962310:intron 30.0%
!! TTGATATTGGTGCTAAATTC+AGG + chr6_3:85517520-85517539 None:intergenic 30.0%
TTTGTCAACAAAGGGAAATT+TGG + chr6_3:85517560-85517579 None:intergenic 30.0%
GATGATTAATTCGATCAGTT+TGG - chr6_3:85517597-85517616 Msa0962310:intron 30.0%
! ATCAGTTTGGTAATATCTGT+TGG - chr6_3:85517610-85517629 Msa0962310:intron 30.0%
! TCAGTTTGGTAATATCTGTT+GGG - chr6_3:85517611-85517630 Msa0962310:intron 30.0%
ACTTATCAAGAACATAAAGC+AGG + chr6_3:85517665-85517684 None:intergenic 30.0%
! ATGTAAGCATTCCTTTTAAG+AGG + chr6_3:85517750-85517769 None:intergenic 30.0%
! TTTTGCAGTTAATATCCTTG+AGG - chr6_3:85517842-85517861 Msa0962310:intron 30.0%
TTTGCAGTTAATATCCTTGA+GGG - chr6_3:85517843-85517862 Msa0962310:intron 30.0%
! CACATCTATTTGAAATGCTT+GGG + chr6_3:85517977-85517996 None:intergenic 30.0%
! TCACATCTATTTGAAATGCT+TGG + chr6_3:85517978-85517997 None:intergenic 30.0%
AGCATTTCAAATAGATGTGA+TGG - chr6_3:85517978-85517997 Msa0962310:intron 30.0%
GCATTTCAAATAGATGTGAT+GGG - chr6_3:85517979-85517998 Msa0962310:intron 30.0%
TTCTATGACAATTGGCATAA+GGG + chr6_3:85510380-85510399 None:intergenic 30.0%
ATTCTATGACAATTGGCATA+AGG + chr6_3:85510381-85510400 None:intergenic 30.0%
! TATCTGATGTGGTTTAGTTT+GGG - chr6_3:85518291-85518310 Msa0962310:intron 30.0%
GTTAGACATGATGAAAACAA+AGG - chr6_3:85510610-85510629 Msa0962310:intron 30.0%
!! GATTAAGACTTCAGGTTTTT+CGG + chr6_3:85518530-85518549 None:intergenic 30.0%
! CTTGAACAATAAACTTTTCC+TGG - chr6_3:85518788-85518807 Msa0962310:intron 30.0%
TGAGACAACAACAAATATGA+AGG + chr6_3:85519162-85519181 None:intergenic 30.0%
!!! TCCATCTTCAAATTTTTTGC+AGG - chr6_3:85519223-85519242 Msa0962310:intron 30.0%
!!! CCATCTTCAAATTTTTTGCA+GGG - chr6_3:85519224-85519243 Msa0962310:intron 30.0%
TCAATGACAAAGCTATATAG+AGG - chr6_3:85519288-85519307 Msa0962310:five_prime_UTR 30.0%
GTGATTGTGTTCTTAAATGG+AGG + chr6_3:85507983-85508002 None:intergenic 35.0%
GTGGTGATTGTGTTCTTAAA+TGG + chr6_3:85507986-85508005 None:intergenic 35.0%
TCTAGATGAGAGAAGAACAA+TGG + chr6_3:85508008-85508027 None:intergenic 35.0%
GTAAATTGACAAGGTCAGTT+AGG + chr6_3:85508736-85508755 None:intergenic 35.0%
GGAAATAATTCTGTCATGGA+AGG - chr6_3:85509174-85509193 Msa0962310:intron 35.0%
TGAAGTGGTAATCATCAAAC+AGG + chr6_3:85509205-85509224 None:intergenic 35.0%
AATATGCAATAGCAACTTGC+AGG - chr6_3:85509444-85509463 Msa0962310:exon 35.0%
GACTTGCAAATTGCAATCTA+TGG - chr6_3:85509513-85509532 Msa0962310:intron 35.0%
AAGTAGCTTCCACTAATGTT+AGG + chr6_3:85509634-85509653 None:intergenic 35.0%
GATAACGTAAACACATGACA+AGG + chr6_3:85509702-85509721 None:intergenic 35.0%
TGTTTACGTTATCGATGTCA+TGG - chr6_3:85509709-85509728 Msa0962310:intron 35.0%
GTATTTAACCTTCTGCTTTC+TGG - chr6_3:85509958-85509977 Msa0962310:intron 35.0%
TAGATTTCATCGGATGCATA+AGG + chr6_3:85510250-85510269 None:intergenic 35.0%
! GTGACTTGTGAGCATTTAAA+AGG - chr6_3:85510840-85510859 Msa0962310:intron 35.0%
TCCAACTGCAAAAAATGAAG+AGG - chr6_3:85510949-85510968 Msa0962310:intron 35.0%
!!! TCCTCTTCATTTTTTGCAGT+TGG + chr6_3:85510953-85510972 None:intergenic 35.0%
TTGAAGGTTTGCATATGTCT+GGG + chr6_3:85511281-85511300 None:intergenic 35.0%
TTTGAAGGTTTGCATATGTC+TGG + chr6_3:85511282-85511301 None:intergenic 35.0%
CATTTGAGCATTCATAGGTT+CGG - chr6_3:85511472-85511491 Msa0962310:intron 35.0%
CGAATGCATTCTTACTCTAT+TGG - chr6_3:85511763-85511782 Msa0962310:intron 35.0%
TGCATTCTTACTCTATTGGT+TGG - chr6_3:85511767-85511786 Msa0962310:intron 35.0%
!! TATTGGTTGGCTTATGATAC+TGG - chr6_3:85511780-85511799 Msa0962310:intron 35.0%
!! ATTGGTTGGCTTATGATACT+GGG - chr6_3:85511781-85511800 Msa0962310:intron 35.0%
!! ACTTTCAAGTATTGATCTGG+AGG - chr6_3:85511844-85511863 Msa0962310:intron 35.0%
!! TCTTTGAAGTATTGATCTGC+AGG - chr6_3:85511886-85511905 Msa0962310:intron 35.0%
TCATCATCAAAACCATTTGG+TGG - chr6_3:85511979-85511998 Msa0962310:intron 35.0%
CATCATCAAAACCATTTGGT+GGG - chr6_3:85511980-85511999 Msa0962310:intron 35.0%
CATATACGCTATACTACCTT+CGG + chr6_3:85512040-85512059 None:intergenic 35.0%
TATTGGACTTCAATTCTTGG+AGG - chr6_3:85512089-85512108 Msa0962310:intron 35.0%
GGAGGAAATTCACAAAGATA+AGG - chr6_3:85512107-85512126 Msa0962310:intron 35.0%
!!! CTGATTGCTCTTGTTTTTTG+TGG - chr6_3:85512395-85512414 Msa0962310:intron 35.0%
TGGTTAATATGCACATTTCC+AGG - chr6_3:85512415-85512434 Msa0962310:intron 35.0%
GGTTAATATGCACATTTCCA+GGG - chr6_3:85512416-85512435 Msa0962310:intron 35.0%
TACAGTATGTGAATCTAGCT+GGG + chr6_3:85512481-85512500 None:intergenic 35.0%
! AATAGATGTGATGGGACAAA+AGG - chr6_3:85512578-85512597 Msa0962310:intron 35.0%
CAAAAGGCTTATTAGCATAG+TGG - chr6_3:85512594-85512613 Msa0962310:intron 35.0%
! TGTTTGTTAGCAATGGGATA+TGG - chr6_3:85512889-85512908 Msa0962310:intron 35.0%
AATGGGATATGGTTGAGTTT+GGG - chr6_3:85512900-85512919 Msa0962310:intron 35.0%
GTCTAACAACAGAAAAAGAG+GGG + chr6_3:85513013-85513032 None:intergenic 35.0%
! GTGACTTGTGAGCATTTAAA+TGG - chr6_3:85510840-85510859 Msa0962310:intron 35.0%
ATGCAACTGCAAAAATGAAG+AGG - chr6_3:85513336-85513355 Msa0962310:intron 35.0%
AGAGTCGAGTATTATAAGGT+GGG - chr6_3:85513645-85513664 Msa0962310:intron 35.0%
! TTAGTATATGCCTTGTTCCA+TGG - chr6_3:85513922-85513941 Msa0962310:intron 35.0%
! TTAGTATATGCCTTGTTCCA+TGG - chr6_3:85513922-85513941 Msa0962310:intron 35.0%
ATTATCTATTCTTCTTGGGG+TGG - chr6_3:85514046-85514065 Msa0962310:intron 35.0%
! CTATGATTTCCTCTTTTGAC+AGG - chr6_3:85514206-85514225 Msa0962310:intron 35.0%
CTCAATAAAGACAAGCAGTA+AGG - chr6_3:85514398-85514417 Msa0962310:five_prime_UTR 35.0%
ATAAAGACAAGCAGTAAGGA+AGG - chr6_3:85514402-85514421 Msa0962310:five_prime_UTR 35.0%
TAAAGACAAGCAGTAAGGAA+GGG - chr6_3:85514403-85514422 Msa0962310:five_prime_UTR 35.0%
CATGGATTTACTAATCTTGG+AGG - chr6_3:85514441-85514460 Msa0962310:intron 35.0%
ATACAATAAGGAGAATGGAG+GGG + chr6_3:85514471-85514490 None:intergenic 35.0%
!! TTAAAGGACTCAGAGGTATT+TGG - chr6_3:85514510-85514529 Msa0962310:intron 35.0%
! TGGTACTAGCTTAAACAAAG+AGG + chr6_3:85514992-85515011 None:intergenic 35.0%
! TTCTTGATGAAAAGCACATG+TGG - chr6_3:85515369-85515388 Msa0962310:intron 35.0%
AGAAAAGAGAAGGGTAAGAA+GGG + chr6_3:85515500-85515519 None:intergenic 35.0%
AAGAAAAGAGAAGGGTAAGA+AGG + chr6_3:85515501-85515520 None:intergenic 35.0%
TGAAAAAAGAAGAGAGAAGG+TGG + chr6_3:85515562-85515581 None:intergenic 35.0%
!! AGTTTTATAGAGGAGAAAGG+GGG + chr6_3:85515630-85515649 None:intergenic 35.0%
!! GAGTTTTATAGAGGAGAAAG+GGG + chr6_3:85515631-85515650 None:intergenic 35.0%
TTGTAACTTGGTTTCGTCAA+TGG + chr6_3:85515732-85515751 None:intergenic 35.0%
! TTTTCACCTCAGCTATTTGA+AGG - chr6_3:85515810-85515829 Msa0962310:intron 35.0%
AACATTCCTTCAAATAGCTG+AGG + chr6_3:85515819-85515838 None:intergenic 35.0%
!!! GGATCTACCATTTTTTGCAT+CGG - chr6_3:85515875-85515894 Msa0962310:intron 35.0%
TACTCATATCCCGATTCAAA+TGG - chr6_3:85516411-85516430 Msa0962310:intron 35.0%
CTCATCATAACATGGGAAAT+TGG + chr6_3:85516483-85516502 None:intergenic 35.0%
AAAGGCTCTCATCATAACAT+GGG + chr6_3:85516490-85516509 None:intergenic 35.0%
TAAAGGCTCTCATCATAACA+TGG + chr6_3:85516491-85516510 None:intergenic 35.0%
ATTCTTATCAAATTTGGCCG+AGG + chr6_3:85516516-85516535 None:intergenic 35.0%
! ATGCTTTCAAGTACCTTTCT+TGG - chr6_3:85516582-85516601 Msa0962310:intron 35.0%
! AAGTACCTTTCTTGGACTTT+TGG - chr6_3:85516590-85516609 Msa0962310:intron 35.0%
GCTGTAAGTGAGGTAAATTT+GGG - chr6_3:85516940-85516959 Msa0962310:intron 35.0%
!!! TCTTCTTGGTTTTGGATTAG+GGG - chr6_3:85517129-85517148 Msa0962310:intron 35.0%
TTGAAAGTTGCAATGATGTC+AGG + chr6_3:85517165-85517184 None:intergenic 35.0%
GCAACTTTCAAAGTCATTGA+TGG - chr6_3:85517174-85517193 Msa0962310:intron 35.0%
! CTATGAAGTTTTTCGTCGAA+TGG - chr6_3:85517216-85517235 Msa0962310:intron 35.0%
AACTTTGCTCGCTAATATCT+TGG - chr6_3:85517360-85517379 Msa0962310:intron 35.0%
ACTTTGCTCGCTAATATCTT+GGG - chr6_3:85517361-85517380 Msa0962310:intron 35.0%
TGGTTGTTTAGCCTCTTAAA+AGG - chr6_3:85517736-85517755 Msa0962310:intron 35.0%
GAGAGAAAAAAACGTACAGT+AGG + chr6_3:85517902-85517921 None:intergenic 35.0%
! AATAGATGTGATGGGACAAA+AGG - chr6_3:85512578-85512597 Msa0962310:intron 35.0%
TTCTTTGTCAGTATCTGATG+TGG - chr6_3:85518280-85518299 Msa0962310:intron 35.0%
GTATCTGATGTGGTTTAGTT+TGG - chr6_3:85518290-85518309 Msa0962310:intron 35.0%
!! ATCTGATGTGGTTTAGTTTG+GGG - chr6_3:85518292-85518311 Msa0962310:intron 35.0%
!!! ATGTACCTTTTTTGGACTCT+TGG - chr6_3:85518648-85518667 Msa0962310:intron 35.0%
! ACAATAAACTTTTCCTGGTG+TGG - chr6_3:85518793-85518812 Msa0962310:intron 35.0%
! CAATAAACTTTTCCTGGTGT+GGG - chr6_3:85518794-85518813 Msa0962310:intron 35.0%
CTTGCTTCTCAGATATACAA+AGG + chr6_3:85519085-85519104 None:intergenic 35.0%
CCCTGCAAAAAATTTGAAGA+TGG + chr6_3:85519227-85519246 None:intergenic 35.0%
TGCAGGGAATACAAAAGAAA+AGG - chr6_3:85519240-85519259 Msa0962310:intron 35.0%
ATGACAAAGCTATATAGAGG+TGG - chr6_3:85519291-85519310 Msa0962310:five_prime_UTR 35.0%
TATATAGAGGTGGAAGGAAA+TGG - chr6_3:85519301-85519320 Msa0962310:five_prime_UTR 35.0%
TTGAAAAAGATCTGCAACGA+AGG - chr6_3:85519327-85519346 Msa0962310:five_prime_UTR 35.0%
!!! GTTTTTTTGGCCATATAAGG+TGG - chr6_3:85519411-85519430 Msa0962310:five_prime_UTR 35.0%
GAGAATGAATGTATGGCTGT+AGG + chr6_3:85507878-85507897 None:intergenic 40.0%
GTTCTTAAATGGAGGTCGAA+CGG + chr6_3:85507975-85507994 None:intergenic 40.0%
AGATGAGAGAAGAACAATGG+TGG + chr6_3:85508005-85508024 None:intergenic 40.0%
! CTCTCATCTAGATTTTGCGA+TGG - chr6_3:85508016-85508035 Msa0962310:three_prime_UTR 40.0%
! TCATCTAGATTTTGCGATGG+TGG - chr6_3:85508019-85508038 Msa0962310:three_prime_UTR 40.0%
! GTTTTTACCATCTCGATCCA+CGG + chr6_3:85508068-85508087 None:intergenic 40.0%
TCGAGTTAGGGTTTCATAGA+AGG - chr6_3:85508199-85508218 Msa0962310:intron 40.0%
GATGTTTCTTCAAAAGACGG+AGG - chr6_3:85508273-85508292 Msa0962310:intron 40.0%
TCTACAAAACTCACATGCAG+AGG + chr6_3:85508356-85508375 None:intergenic 40.0%
TTGCAACTTGTGTGCATGAA+TGG + chr6_3:85508654-85508673 None:intergenic 40.0%
CACCATCACATGTAAGGAAT+GGG + chr6_3:85509851-85509870 None:intergenic 40.0%
AATACCTGCTCTGATGTTGA+AGG + chr6_3:85509943-85509962 None:intergenic 40.0%
CCAATTTACCAGAAAGCAGA+AGG + chr6_3:85509969-85509988 None:intergenic 40.0%
! CCTTCTGCTTTCTGGTAAAT+TGG - chr6_3:85509966-85509985 Msa0962310:intron 40.0%
ATTGATAGAGACTGTCATGG+TGG + chr6_3:85510034-85510053 None:intergenic 40.0%
TATTGGATGTGGTTGAGTCT+GGG - chr6_3:85510550-85510569 Msa0962310:intron 40.0%
! AATCGCATATGCAGCTTTGA+AGG + chr6_3:85511297-85511316 None:intergenic 40.0%
TCAAATCAAGTCCAAGTCCA+CGG + chr6_3:85511324-85511343 None:intergenic 40.0%
GCATTCGTAATTGCACGTTA+GGG + chr6_3:85511750-85511769 None:intergenic 40.0%
TGCATTCGTAATTGCACGTT+AGG + chr6_3:85511751-85511770 None:intergenic 40.0%
TTATGATACTGGGATGTCAG+TGG - chr6_3:85511791-85511810 Msa0962310:intron 40.0%
!! TCAAAACCATTTGGTGGGTT+TGG - chr6_3:85511985-85512004 Msa0962310:intron 40.0%
! TTTTCTCCAAACCCACCAAA+TGG + chr6_3:85511994-85512013 None:intergenic 40.0%
! TTGAAGAAGCATATGACCGA+AGG - chr6_3:85512021-85512040 Msa0962310:intron 40.0%
ACAGTATGTGAATCTAGCTG+GGG + chr6_3:85512480-85512499 None:intergenic 40.0%
GTACAGTATGTGAATCTAGC+TGG + chr6_3:85512482-85512501 None:intergenic 40.0%
CAATGGGATATGGTTGAGTT+TGG - chr6_3:85512899-85512918 Msa0962310:intron 40.0%
ATGGGATATGGTTGAGTTTG+GGG - chr6_3:85512901-85512920 Msa0962310:intron 40.0%
TATGGTTGAGTTTGGGGATA+TGG - chr6_3:85512907-85512926 Msa0962310:intron 40.0%
!! GAAGAAGCATTAGTTCAGCA+AGG - chr6_3:85512929-85512948 Msa0962310:intron 40.0%
CAACCCTTTCTGAATGCATA+GGG - chr6_3:85513042-85513061 Msa0962310:intron 40.0%
AACCCTTTCTGAATGCATAG+GGG - chr6_3:85513043-85513062 Msa0962310:intron 40.0%
AACCCCTATGCATTCAGAAA+GGG + chr6_3:85513048-85513067 None:intergenic 40.0%
AGGCAGAGTCGAGTATTATA+AGG - chr6_3:85513641-85513660 Msa0962310:intron 40.0%
CAGAGTCGAGTATTATAAGG+TGG - chr6_3:85513644-85513663 Msa0962310:intron 40.0%
TATAAAAGGGCCATGGAACA+AGG + chr6_3:85513935-85513954 None:intergenic 40.0%
! TCCATGGCCCTTTTATATGA+AGG - chr6_3:85513938-85513957 Msa0962310:intron 40.0%
TCCTTCATATAAAAGGGCCA+TGG + chr6_3:85513942-85513961 None:intergenic 40.0%
TATAAAAGGGCCATGGAACA+AGG + chr6_3:85513935-85513954 None:intergenic 40.0%
! TCCATGGCCCTTTTATATGA+AGG - chr6_3:85513938-85513957 Msa0962310:intron 40.0%
TCCTTCATATAAAAGGGCCA+TGG + chr6_3:85513942-85513961 None:intergenic 40.0%
GCATTTACAAGTTCTCTCCT+AGG - chr6_3:85514068-85514087 Msa0962310:intron 40.0%
TCAGTGACGTATCAAATGGA+CGG - chr6_3:85514154-85514173 Msa0962310:intron 40.0%
GATAACAGACCTGTCAAAAG+AGG + chr6_3:85514218-85514237 None:intergenic 40.0%
GGGAAATTTAAAGGACTCAG+AGG - chr6_3:85514503-85514522 Msa0962310:intron 40.0%
CTAATGGGATCGATGTAGAA+GGG + chr6_3:85514813-85514832 None:intergenic 40.0%
TCTAATGGGATCGATGTAGA+AGG + chr6_3:85514814-85514833 None:intergenic 40.0%
! GTTTTATAGAGGAGAAAGGG+GGG + chr6_3:85515629-85515648 None:intergenic 40.0%
GGAGGTTCTACTTTGTAACT+TGG + chr6_3:85515744-85515763 None:intergenic 40.0%
CAACACCAAAAGTCCAAGAA+AGG + chr6_3:85516598-85516617 None:intergenic 40.0%
! TTATGACTTGGCTGTAAGTG+AGG - chr6_3:85516930-85516949 Msa0962310:intron 40.0%
GGCTGTAAGTGAGGTAAATT+TGG - chr6_3:85516939-85516958 Msa0962310:intron 40.0%
!!! CTTCTTGGTTTTGGATTAGG+GGG - chr6_3:85517130-85517149 Msa0962310:intron 40.0%
!!! TTCTTGGTTTTGGATTAGGG+GGG - chr6_3:85517131-85517150 Msa0962310:intron 40.0%
TCATAGACCGTTGATGTTTC+AGG + chr6_3:85517202-85517221 None:intergenic 40.0%
CGAACTTCTTCACTATGGAA+TGG - chr6_3:85517289-85517308 Msa0962310:intron 40.0%
AACGTACAGTAGGTGAATCT+AGG + chr6_3:85517892-85517911 None:intergenic 40.0%
CTACGCATCAAGCTTGATAA+AGG + chr6_3:85518160-85518179 None:intergenic 40.0%
ACACACCAAGAGTCCAAAAA+AGG + chr6_3:85518656-85518675 None:intergenic 40.0%
GGTGTGTTGTAAATCTTCAG+TGG - chr6_3:85518669-85518688 Msa0962310:intron 40.0%
!!! CCTTTTTAGGTGTACTTTGC+AGG + chr6_3:85518991-85519010 None:intergenic 40.0%
CCTGCAAAGTACACCTAAAA+AGG - chr6_3:85518988-85519007 Msa0962310:five_prime_UTR 40.0%
CTGAGAAGCAAGAAATGAAG+AGG - chr6_3:85519093-85519112 Msa0962310:intron 40.0%
AATGAAGAGGTCAACCACTA+TGG - chr6_3:85519106-85519125 Msa0962310:intron 40.0%
TGTACTACTCCAAACCATAG+TGG + chr6_3:85519123-85519142 None:intergenic 40.0%
CAAAGCTATATAGAGGTGGA+AGG - chr6_3:85519295-85519314 Msa0962310:five_prime_UTR 40.0%
CAAGGCTACAACTCTGATGT+TGG + chr6_3:85507944-85507963 None:intergenic 45.0%
TTAAATGGAGGTCGAACGGT+TGG + chr6_3:85507971-85507990 None:intergenic 45.0%
!! TCTAGATTTTGCGATGGTGG+AGG - chr6_3:85508022-85508041 Msa0962310:three_prime_UTR 45.0%
CCAGGAATAAAGGTCAACAG+AGG + chr6_3:85508875-85508894 None:intergenic 45.0%
CCTCTGTTGACCTTTATTCC+TGG - chr6_3:85508872-85508891 Msa0962310:intron 45.0%
! ACTTGCAGGTCCGCATTTTT+AGG - chr6_3:85509458-85509477 Msa0962310:CDS 45.0%
CCACCATCACATGTAAGGAA+TGG + chr6_3:85509852-85509871 None:intergenic 45.0%
CCATTCCTTACATGTGATGG+TGG - chr6_3:85509849-85509868 Msa0962310:intron 45.0%
!! TTCCTTACATGTGATGGTGG+CGG - chr6_3:85509852-85509871 Msa0962310:intron 45.0%
CTGTGCTTAGTCTCTGATGT+TGG + chr6_3:85509909-85509928 None:intergenic 45.0%
GTATTGGATGTGGTTGAGTC+TGG - chr6_3:85510549-85510568 Msa0962310:intron 45.0%
ATTGGATGTGGTTGAGTCTG+GGG - chr6_3:85510551-85510570 Msa0962310:intron 45.0%
CTAGAAGCAACAGTTCTGCA+AGG - chr6_3:85510579-85510598 Msa0962310:intron 45.0%
CAAATCAAGTCCAAGTCCAC+GGG + chr6_3:85511323-85511342 None:intergenic 45.0%
! ATTCATAGGTTCGGTCGTGT+AGG - chr6_3:85511481-85511500 Msa0962310:intron 45.0%
TTGCCTTATAGCAGCCATGA+AGG - chr6_3:85512135-85512154 Msa0962310:intron 45.0%
GTACCTTCATGGCTGCTATA+AGG + chr6_3:85512141-85512160 None:intergenic 45.0%
CAGTATGTGAATCTAGCTGG+GGG + chr6_3:85512479-85512498 None:intergenic 45.0%
CCTATGCATTCAGAAAGGGT+TGG + chr6_3:85513044-85513063 None:intergenic 45.0%
CCAACCCTTTCTGAATGCAT+AGG - chr6_3:85513041-85513060 Msa0962310:intron 45.0%
CAACCCCTATGCATTCAGAA+AGG + chr6_3:85513049-85513068 None:intergenic 45.0%
GGGTCCTATCACATAGTCAA+AGG + chr6_3:85513410-85513429 None:intergenic 45.0%
GTGGTGTTTACGCTCAGAAT+TGG - chr6_3:85513771-85513790 Msa0962310:intron 45.0%
TGACGTATCAAATGGACGGA+TGG - chr6_3:85514158-85514177 Msa0962310:intron 45.0%
GGCCTAAAGAATCCAAGACT+CGG - chr6_3:85514531-85514550 Msa0962310:intron 45.0%
GTCCGAGTCTTGGATTCTTT+AGG + chr6_3:85514536-85514555 None:intergenic 45.0%
!! AATGGTGGTGGAGAAGGAAA+AGG + chr6_3:85515535-85515554 None:intergenic 45.0%
AAGAGAGAAGGTGGATGCAA+TGG + chr6_3:85515553-85515572 None:intergenic 45.0%
TCGTCAATGGAAGCTTGTGA+TGG + chr6_3:85515719-85515738 None:intergenic 45.0%
TGATGAGAGCCTTTACACCT+CGG - chr6_3:85516496-85516515 Msa0962310:intron 45.0%
CAAATTTGGCCGAGGTGTAA+AGG + chr6_3:85516508-85516527 None:intergenic 45.0%
!!! TCTTGGTTTTGGATTAGGGG+GGG - chr6_3:85517132-85517151 Msa0962310:intron 45.0%
GATGGTGCCTGAAACATCAA+CGG - chr6_3:85517192-85517211 Msa0962310:intron 45.0%
CTAGAAGCAACAGTTCTGCA+AGG - chr6_3:85510579-85510598 Msa0962310:intron 45.0%
AGAGGTCAACCACTATGGTT+TGG - chr6_3:85519111-85519130 Msa0962310:intron 45.0%
TACAGACGCTCCACCTTATA+TGG + chr6_3:85519424-85519443 None:intergenic 45.0%
!!! TAAAAACAAAATATTTTTTT+TGG + chr6_3:85510884-85510903 None:intergenic 5.0%
!!! TTTAAATAATATTTCTAATT+AGG - chr6_3:85512679-85512698 Msa0962310:intron 5.0%
!!! TTTTAATATTTAATATGTTT+TGG - chr6_3:85510501-85510520 Msa0962310:intron 5.0%
!! ATATAATTTACTTTATAATA+AGG - chr6_3:85513311-85513330 Msa0962310:intron 5.0%
!! TATAATTTACTTTATAATAA+GGG - chr6_3:85513312-85513331 Msa0962310:intron 5.0%
TTTACCATCTCGATCCACGG+TGG + chr6_3:85508065-85508084 None:intergenic 50.0%
GGAATGGGCCTTGATCAGTA+TGG + chr6_3:85509836-85509855 None:intergenic 50.0%
GGCCCATTCCTTACATGTGA+TGG - chr6_3:85509846-85509865 Msa0962310:intron 50.0%
ATCGCCTTCAACATCAGAGC+AGG - chr6_3:85509936-85509955 Msa0962310:intron 50.0%
TGCATATGCGATTCTTCCCG+TGG - chr6_3:85511304-85511323 Msa0962310:intron 50.0%
AACTCACTAAGTTGCTGCCC+TGG + chr6_3:85512436-85512455 None:intergenic 50.0%
TGAATCTAGCTGGGGGAAGT+GGG + chr6_3:85512472-85512491 None:intergenic 50.0%
CATACGCAGGGTCAAGGAAA+GGG + chr6_3:85513430-85513449 None:intergenic 50.0%
TTTCCTTGACCCTGCGTATG+CGG - chr6_3:85513430-85513449 Msa0962310:intron 50.0%
CTAAAACTCCCGCATACGCA+GGG + chr6_3:85513442-85513461 None:intergenic 50.0%
ACTAAAACTCCCGCATACGC+AGG + chr6_3:85513443-85513462 None:intergenic 50.0%
TTTGTTCCCTGCCAGTCTTG+AGG - chr6_3:85513748-85513767 Msa0962310:intron 50.0%
TTGTTCCCTGCCAGTCTTGA+GGG - chr6_3:85513749-85513768 Msa0962310:intron 50.0%
GTAAACACCACCCTCAAGAC+TGG + chr6_3:85513762-85513781 None:intergenic 50.0%
AAATGGACGGATGGCTACGA+TGG - chr6_3:85514167-85514186 Msa0962310:intron 50.0%
AATGGACGGATGGCTACGAT+GGG - chr6_3:85514168-85514187 Msa0962310:intron 50.0%
! ACGTGTGAGAGAGGCACATA+AGG + chr6_3:85515398-85515417 None:intergenic 50.0%
GGGAACACATGCAGGCAAAT+GGG + chr6_3:85515480-85515499 None:intergenic 50.0%
AGGGAACACATGCAGGCAAA+TGG + chr6_3:85515481-85515500 None:intergenic 50.0%
GGTAAGAAGGGAACACATGC+AGG + chr6_3:85515488-85515507 None:intergenic 50.0%
AGAGAAGGTGGATGCAATGG+TGG + chr6_3:85515550-85515569 None:intergenic 50.0%
CAATGGAAGCTTGTGATGGC+TGG + chr6_3:85515715-85515734 None:intergenic 50.0%
TGGTTGTCTCATCACCCTCA+AGG + chr6_3:85517860-85517879 None:intergenic 50.0%
CAGTAGGTGAATCTAGGCGA+GGG + chr6_3:85517886-85517905 None:intergenic 50.0%
ACAGTAGGTGAATCTAGGCG+AGG + chr6_3:85517887-85517906 None:intergenic 50.0%
TTTCCTGGTGTGGGTACTTC+AGG - chr6_3:85518803-85518822 Msa0962310:intron 50.0%
! TATCCTGAAGTACCCACACC+AGG + chr6_3:85518809-85518828 None:intergenic 50.0%
AGCCGCCACCATCACATGTA+AGG + chr6_3:85509857-85509876 None:intergenic 55.0%
TGCGATTCTTCCCGTGGACT+TGG - chr6_3:85511310-85511329 Msa0962310:intron 55.0%
GTGAATCTAGCTGGGGGAAG+TGG + chr6_3:85512473-85512492 None:intergenic 55.0%
GCATACGCAGGGTCAAGGAA+AGG + chr6_3:85513431-85513450 None:intergenic 55.0%
TTCCTTGACCCTGCGTATGC+GGG - chr6_3:85513431-85513450 Msa0962310:intron 55.0%
!! TGCGGGAGTTTTAGTGCACC+AGG - chr6_3:85513448-85513467 Msa0962310:intron 55.0%
GATGCTGACACGTGTGAGAG+AGG + chr6_3:85515407-85515426 None:intergenic 55.0%
!! GGATGCAATGGTGGTGGAGA+AGG + chr6_3:85515541-85515560 None:intergenic 55.0%
GAAGGTGGATGCAATGGTGG+TGG + chr6_3:85515547-85515566 None:intergenic 55.0%
GAAAGGGGGGATCATGATGG+TGG + chr6_3:85515616-85515635 None:intergenic 55.0%
GGAGAAAGGGGGGATCATGA+TGG + chr6_3:85515619-85515638 None:intergenic 55.0%
GTGAATCTAGGCGAGGGAAG+TGG + chr6_3:85517880-85517899 None:intergenic 55.0%
GGTCGAACGGTTGGCATGCA+AGG + chr6_3:85507962-85507981 None:intergenic 60.0%
ACAGACATGCAACGCCACCG+TGG - chr6_3:85508048-85508067 Msa0962310:three_prime_UTR 60.0%
AACGCCACCGTGGATCGAGA+TGG - chr6_3:85508058-85508077 Msa0962310:three_prime_UTR 60.0%
TTCCCTGCCAGTCTTGAGGG+TGG - chr6_3:85513752-85513771 Msa0962310:intron 60.0%
CACCACCCTCAAGACTGGCA+GGG + chr6_3:85513757-85513776 None:intergenic 60.0%
ACACCACCCTCAAGACTGGC+AGG + chr6_3:85513758-85513777 None:intergenic 60.0%
CTCCCGCATACGCAGGGTCA+AGG + chr6_3:85513436-85513455 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 85507832 85519514 85507832 ID=Msa0962310;Name=Msa0962310
chr6_3 mRNA 85507832 85519514 85507832 ID=Msa0962310-mRNA-1;Parent=Msa0962310;Name=Msa0962310-mRNA-1;_AED=0.41;_eAED=0.41;_QI=936|1|1|1|0.09|0.08|12|363|55
chr6_3 exon 85507832 85508101 85507832 ID=Msa0962310-mRNA-1:exon:15400;Parent=Msa0962310-mRNA-1
chr6_3 exon 85508974 85509055 85508974 ID=Msa0962310-mRNA-1:exon:15399;Parent=Msa0962310-mRNA-1
chr6_3 exon 85509442 85509496 85509442 ID=Msa0962310-mRNA-1:exon:15398;Parent=Msa0962310-mRNA-1
chr6_3 exon 85510066 85510197 85510066 ID=Msa0962310-mRNA-1:exon:15397;Parent=Msa0962310-mRNA-1
chr6_3 exon 85513119 85513188 85513119 ID=Msa0962310-mRNA-1:exon:15396;Parent=Msa0962310-mRNA-1
chr6_3 exon 85514362 85514447 85514362 ID=Msa0962310-mRNA-1:exon:15395;Parent=Msa0962310-mRNA-1
chr6_3 exon 85514849 85514909 85514849 ID=Msa0962310-mRNA-1:exon:15394;Parent=Msa0962310-mRNA-1
chr6_3 exon 85515190 85515382 85515190 ID=Msa0962310-mRNA-1:exon:15393;Parent=Msa0962310-mRNA-1
chr6_3 exon 85516711 85516796 85516711 ID=Msa0962310-mRNA-1:exon:15392;Parent=Msa0962310-mRNA-1
chr6_3 exon 85517389 85517499 85517389 ID=Msa0962310-mRNA-1:exon:15391;Parent=Msa0962310-mRNA-1
chr6_3 exon 85518985 85519057 85518985 ID=Msa0962310-mRNA-1:exon:15390;Parent=Msa0962310-mRNA-1
chr6_3 exon 85519267 85519514 85519267 ID=Msa0962310-mRNA-1:exon:15389;Parent=Msa0962310-mRNA-1
chr6_3 five_prime_UTR 85519267 85519514 85519267 ID=Msa0962310-mRNA-1:five_prime_utr;Parent=Msa0962310-mRNA-1
chr6_3 five_prime_UTR 85518985 85519057 85518985 ID=Msa0962310-mRNA-1:five_prime_utr;Parent=Msa0962310-mRNA-1
chr6_3 five_prime_UTR 85517389 85517499 85517389 ID=Msa0962310-mRNA-1:five_prime_utr;Parent=Msa0962310-mRNA-1
chr6_3 five_prime_UTR 85516711 85516796 85516711 ID=Msa0962310-mRNA-1:five_prime_utr;Parent=Msa0962310-mRNA-1
chr6_3 five_prime_UTR 85515190 85515382 85515190 ID=Msa0962310-mRNA-1:five_prime_utr;Parent=Msa0962310-mRNA-1
chr6_3 five_prime_UTR 85514849 85514909 85514849 ID=Msa0962310-mRNA-1:five_prime_utr;Parent=Msa0962310-mRNA-1
chr6_3 five_prime_UTR 85514362 85514447 85514362 ID=Msa0962310-mRNA-1:five_prime_utr;Parent=Msa0962310-mRNA-1
chr6_3 five_prime_UTR 85513119 85513188 85513119 ID=Msa0962310-mRNA-1:five_prime_utr;Parent=Msa0962310-mRNA-1
chr6_3 five_prime_UTR 85510190 85510197 85510190 ID=Msa0962310-mRNA-1:five_prime_utr;Parent=Msa0962310-mRNA-1
chr6_3 CDS 85510066 85510189 85510066 ID=Msa0962310-mRNA-1:cds;Parent=Msa0962310-mRNA-1
chr6_3 CDS 85509453 85509496 85509453 ID=Msa0962310-mRNA-1:cds;Parent=Msa0962310-mRNA-1
chr6_3 three_prime_UTR 85509442 85509452 85509442 ID=Msa0962310-mRNA-1:three_prime_utr;Parent=Msa0962310-mRNA-1
chr6_3 three_prime_UTR 85508974 85509055 85508974 ID=Msa0962310-mRNA-1:three_prime_utr;Parent=Msa0962310-mRNA-1
chr6_3 three_prime_UTR 85507832 85508101 85507832 ID=Msa0962310-mRNA-1:three_prime_utr;Parent=Msa0962310-mRNA-1
Gene Sequence

>Msa0962310

ATGAACCTGACATCATTGCAACTTTCAAAGTCATTGATGGTGCCTGAAACATCAACGGTCTATGAAGTTTTTCGTCGAATGGCTGTTTGCAGAGTAGATGCTCAATTTCTAACTGATTCAAATGTTAATATCCTTGAGGGTGATGAGACAACCACTTCCCTCGCCTAG

Protein sequence

>Msa0962310

MNLTSLQLSKSLMVPETSTVYEVFRRMAVCRVDAQFLTDSNVNILEGDETTTSLA*