AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0555880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0555880 MtrunA17_Chr8g0386311 75.676 37 9 0 5 41 44 80 2.07e-11 56.6
Msa0555880 MtrunA17_Chr3g0132111 69.231 39 12 0 3 41 41 79 6.32e-11 55.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 75 sgRNAs with CRISPR-Local

Find 527 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGTTGAGTTTGGGGATA+TGG 0.204068 4_1:+53895377 Msa0555880:five_prime_UTR
CAATGGGATATGGTTGAGTT+TGG 0.233721 4_1:+53895369 Msa0555880:five_prime_UTR
TCATAGACCGTTGATGTTTC+AGG 0.247801 4_1:-53899775 None:intergenic
TAGGAAGAAGAGAAAGAAAA+AGG 0.281810 4_1:-53890328 None:intergenic
TATTGGATGTGGTTGAGTTT+GGG 0.284981 4_1:+53893020 Msa0555880:five_prime_UTR
TATCTGATGTGGTTTAGTTT+GGG 0.288954 4_1:+53900824 Msa0555880:three_prime_UTR
TCAAAACCATTTGGTGGGTT+TGG 0.293130 4_1:+53894455 Msa0555880:five_prime_UTR
GTATCTGATGTGGTTTAGTT+TGG 0.306306 4_1:+53900823 Msa0555880:intron
GTATTGGATGTGGTTGAGTT+TGG 0.319554 4_1:+53893019 Msa0555880:intron
GCAACTTTCAAAGTCATTGA+TGG 0.343752 4_1:+53899750 Msa0555880:CDS
GTGGTGATTGTGTTCTTAAA+TGG 0.344282 4_1:-53890455 None:intergenic
ACATATTGGACTTCAATTCT+TGG 0.348432 4_1:+53894556 Msa0555880:five_prime_UTR
GTACCTTCATGGCTGCTATA+AGG 0.356886 4_1:-53894608 None:intergenic
TGTTTGTTAGCAATGGGATA+TGG 0.369203 4_1:+53895359 Msa0555880:intron
AATGGGATATGGTTGAGTTT+GGG 0.371906 4_1:+53895370 Msa0555880:five_prime_UTR
AATTCATCATCAAAACCATT+TGG 0.420979 4_1:+53894446 Msa0555880:five_prime_UTR
TTGAAAGTTGCAATGATGTC+AGG 0.435539 4_1:-53899738 None:intergenic
AACTAACAGACAGAACATAT+TGG 0.455086 4_1:+53894542 Msa0555880:five_prime_UTR
CACCATCACATGTAAGGAAT+GGG 0.470717 4_1:-53892318 None:intergenic
TTTGCAGTTAATATCCTTGA+GGG 0.481204 4_1:+53900419 Msa0555880:intron
AATACCTGCTCTGATGTTGA+AGG 0.486227 4_1:-53892410 None:intergenic
TATTTCAGTGACGTATCAAA+TGG 0.486620 4_1:+53896618 Msa0555880:intron
CCACCATCACATGTAAGGAA+TGG 0.487274 4_1:-53892319 None:intergenic
CATCATCAAAACCATTTGGT+GGG 0.490956 4_1:+53894450 Msa0555880:five_prime_UTR
AGCCGCCACCATCACATGTA+AGG 0.491245 4_1:-53892324 None:intergenic
CAATTTCTAACTGATTCAAA+TGG 0.497571 4_1:+53899835 Msa0555880:CDS
TATTGGACTTCAATTCTTGG+AGG 0.497740 4_1:+53894559 Msa0555880:five_prime_UTR
ATCTGATGTGGTTTAGTTTG+GGG 0.498692 4_1:+53900825 Msa0555880:three_prime_UTR
CATATACGCTATACTACCTT+CGG 0.498868 4_1:-53894507 None:intergenic
CTGTGCTTAGTCTCTGATGT+TGG 0.504230 4_1:-53892376 None:intergenic
ATTGGATGTGGTTGAGTTTG+GGG 0.506776 4_1:+53893021 Msa0555880:five_prime_UTR
GGTCGAACGGTTGGCATGCA+AGG 0.509562 4_1:-53890431 None:intergenic
GTACAGTATGTGAATCTAGC+TGG 0.510612 4_1:-53894949 None:intergenic
CAAGGCTACAACTCTGATGT+TGG 0.514552 4_1:-53890413 None:intergenic
GATAACAGACCTGTCAAAAG+AGG 0.517452 4_1:-53896683 None:intergenic
AAATGGACGGATGGCTACGA+TGG 0.519451 4_1:+53896635 Msa0555880:five_prime_UTR
TCATCATCAAAACCATTTGG+TGG 0.520783 4_1:+53894449 Msa0555880:five_prime_UTR
ATGGGATATGGTTGAGTTTG+GGG 0.521966 4_1:+53895371 Msa0555880:five_prime_UTR
TACAGTATGTGAATCTAGCT+GGG 0.522078 4_1:-53894948 None:intergenic
GGAGGAAATTCACAAAGATA+AGG 0.522244 4_1:+53894577 Msa0555880:five_prime_UTR
TTGTTTGTTAGTATTGGATG+TGG 0.532339 4_1:+53893009 Msa0555880:intron
GTTAAATGAGAATGAATGTA+TGG 0.538944 4_1:-53890354 None:intergenic
GGCCCATTCCTTACATGTGA+TGG 0.543482 4_1:+53892316 Msa0555880:intron
GTGAATCTAGGCGAGGGAAG+TGG 0.550537 4_1:-53900453 None:intergenic
TTAAATGGAGGTCGAACGGT+TGG 0.553776 4_1:-53890440 None:intergenic
AACGTACAGTAGGTGAATCT+AGG 0.553854 4_1:-53900465 None:intergenic
ATCGCCTTCAACATCAGAGC+AGG 0.555332 4_1:+53892406 Msa0555880:five_prime_UTR
TTCTTTGTCAGTATCTGATG+TGG 0.581703 4_1:+53900813 Msa0555880:intron
TTGCCTTATAGCAGCCATGA+AGG 0.584074 4_1:+53894605 Msa0555880:five_prime_UTR
GTTCTTAAATGGAGGTCGAA+CGG 0.594236 4_1:-53890444 None:intergenic
CCATTCCTTACATGTGATGG+TGG 0.603991 4_1:+53892319 Msa0555880:five_prime_UTR
TGGTTGTCTCATCACCCTCA+AGG 0.606403 4_1:-53900433 None:intergenic
TGACGTATCAAATGGACGGA+TGG 0.606896 4_1:+53896626 Msa0555880:five_prime_UTR
TTCCTTACATGTGATGGTGG+CGG 0.615743 4_1:+53892322 Msa0555880:five_prime_UTR
CAGTAGGTGAATCTAGGCGA+GGG 0.620624 4_1:-53900459 None:intergenic
GAGAATGAATGTATGGCTGT+AGG 0.622146 4_1:-53890347 None:intergenic
GTGATTGTGTTCTTAAATGG+AGG 0.624650 4_1:-53890452 None:intergenic
TTTACCATCTCGATCCTCGG+TGG 0.626398 4_1:-53890534 None:intergenic
AATGGACGGATGGCTACGAT+GGG 0.631048 4_1:+53896636 Msa0555880:five_prime_UTR
CTAGAAGCAACAGTTCTGCA+AGG 0.631238 4_1:+53893049 Msa0555880:five_prime_UTR
CTAGAAGCAACAGTTCTGCA+AGG 0.631238 4_1:+53900853 Msa0555880:three_prime_UTR
TCTACAAAACTCACATGCAG+AGG 0.631811 4_1:-53890825 None:intergenic
GAAGAAGCATTAGTTCAGCA+AGG 0.633978 4_1:+53895399 Msa0555880:five_prime_UTR
TTGAAGAAGCATATGACCGA+AGG 0.637274 4_1:+53894491 Msa0555880:five_prime_UTR
TCTATATGAGAGAAGAACAA+TGG 0.637744 4_1:-53890477 None:intergenic
TCAGTGACGTATCAAATGGA+CGG 0.638041 4_1:+53896622 Msa0555880:intron
GTTAGACATGATGAAAACAA+AGG 0.640821 4_1:+53893080 Msa0555880:five_prime_UTR
GTTAGACATGATGAAAACAA+AGG 0.640821 4_1:+53900884 Msa0555880:three_prime_UTR
ACAGTAGGTGAATCTAGGCG+AGG 0.644049 4_1:-53900460 None:intergenic
GATGGTGCCTGAAACATCAA+CGG 0.665675 4_1:+53899768 Msa0555880:CDS
ACAGTATGTGAATCTAGCTG+GGG 0.667908 4_1:-53894947 None:intergenic
AACGCCACCGAGGATCGAGA+TGG 0.668682 4_1:+53890530 Msa0555880:five_prime_UTR
CAGTATGTGAATCTAGCTGG+GGG 0.695680 4_1:-53894946 None:intergenic
ATATGAGAGAAGAACAATGG+TGG 0.698548 4_1:-53890474 None:intergenic
ACAGACATGCAACGCCACCG+AGG 0.718809 4_1:+53890520 Msa0555880:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAATATTTTTTATAAAT+AGG + chr4_1:53897793-53897812 Msa0555880:intron 0.0%
!!! TAAAAATATTATTTAAAATT+TGG - chr4_1:53900658-53900677 None:intergenic 0.0%
!!! TTTAAATAATATTTTTAATT+AGG + chr4_1:53900661-53900680 Msa0555880:intron 0.0%
!! ATGAAAAATACATATAAATA+TGG - chr4_1:53891073-53891092 None:intergenic 10.0%
!! AGAAGAAAATTAAAAATATA+TGG + chr4_1:53891856-53891875 Msa0555880:intron 10.0%
!! ATTAAATTAGTAATTGTATT+CGG - chr4_1:53892079-53892098 None:intergenic 10.0%
!!! AATTTAACAACATTATTTTA+AGG + chr4_1:53892521-53892540 Msa0555880:intron 10.0%
!! AAGAATAAACTTAATTAAAA+TGG - chr4_1:53894985-53895004 None:intergenic 10.0%
!!! TAGAAATATTATTTAAAATC+AGG - chr4_1:53895146-53895165 None:intergenic 10.0%
!! AAACACATAATTTAAAAAAA+GGG - chr4_1:53895945-53895964 None:intergenic 10.0%
!!! TAAAAACAATAGTTTTTATT+TGG + chr4_1:53896052-53896071 Msa0555880:intron 10.0%
!! AAAATAAATTAATCGATAAT+AGG + chr4_1:53897174-53897193 Msa0555880:intron 10.0%
!!! ACAAAATTTTCAATAAAATA+AGG + chr4_1:53897849-53897868 Msa0555880:intron 10.0%
!!! CAAATTTAGAATTAAAAAAA+TGG - chr4_1:53898641-53898660 None:intergenic 10.0%
!! ATAAACAAAATATAAACTAA+TGG - chr4_1:53898689-53898708 None:intergenic 10.0%
!!! TGTTATTATTATTATTTTCT+TGG + chr4_1:53898750-53898769 Msa0555880:intron 10.0%
!!! GTTATTATTATTATTTTCTT+GGG + chr4_1:53898751-53898770 Msa0555880:intron 10.0%
!! GTTAATATAATTTAACAAAA+AGG - chr4_1:53899409-53899428 None:intergenic 10.0%
!!! TGTTTATCATTTTTTTTTAT+TGG + chr4_1:53899541-53899560 Msa0555880:intron 10.0%
!!! ACAATTTTTTTATCTGTATT+TGG + chr4_1:53890595-53890614 Msa0555880:intron 15.0%
!! TTGATCTATGAAATTTAAAT+TGG + chr4_1:53890888-53890907 Msa0555880:intron 15.0%
!! TTCATAAATTTGTATTAATG+TGG + chr4_1:53891030-53891049 Msa0555880:intron 15.0%
!!! AATACTAACATTTTTAGTAA+AGG - chr4_1:53891183-53891202 None:intergenic 15.0%
!!! GTTTTTTTAATTTTTATTCC+TGG + chr4_1:53891407-53891426 Msa0555880:intron 15.0%
!!! ATACTTAATTTGTTGTTTTA+TGG + chr4_1:53891532-53891551 Msa0555880:intron 15.0%
!! GGTTATATTTATTACTAATA+GGG - chr4_1:53892058-53892077 None:intergenic 15.0%
!!! TAAAAACATCACATTTTAAA+TGG - chr4_1:53892475-53892494 None:intergenic 15.0%
!! ATTGAAATTATGTTTCAAAT+TGG + chr4_1:53892685-53892704 Msa0555880:intron 15.0%
!! TCATTAAGATATTATAACAA+GGG + chr4_1:53893394-53893413 Msa0555880:intron 15.0%
!!! CTTTTTAACTTATCATTTAA+TGG - chr4_1:53893466-53893485 None:intergenic 15.0%
!!! TAAAAAATCTTGTCAATTTT+AGG - chr4_1:53893991-53894010 None:intergenic 15.0%
!!! TTAGATTGTTTTTAATCTTT+TGG + chr4_1:53894644-53894663 Msa0555880:intron 15.0%
!!! ATATGAATCAATTTGTTTTT+AGG - chr4_1:53894674-53894693 None:intergenic 15.0%
!! ATAAACTTAATTAAAATGGA+CGG - chr4_1:53894981-53895000 None:intergenic 15.0%
!!! AAAACGTAATATTGTTTTAT+TGG - chr4_1:53895694-53895713 None:intergenic 15.0%
!! GAAACACATAATTTAAAAAA+AGG - chr4_1:53895946-53895965 None:intergenic 15.0%
!! TTCTTTATAATAAGTATCAT+TGG + chr4_1:53896289-53896308 Msa0555880:intron 15.0%
!! ATTAATAGATATAAATGAGA+GGG - chr4_1:53897055-53897074 None:intergenic 15.0%
!! ATTAATAGTTATACCAATTT+AGG - chr4_1:53897111-53897130 None:intergenic 15.0%
!! GTGATAAATAGTTAAAAAAA+TGG - chr4_1:53897147-53897166 None:intergenic 15.0%
!!! TGAAAATAATTTGTAGTAAA+TGG - chr4_1:53897589-53897608 None:intergenic 15.0%
!!! TTTACTACAAATTATTTTCA+AGG + chr4_1:53897589-53897608 Msa0555880:intron 15.0%
!! AATTATTATGAGTAAAAATG+TGG - chr4_1:53897875-53897894 None:intergenic 15.0%
!!! CAGTTAATATTTTTATTTGT+GGG - chr4_1:53898362-53898381 None:intergenic 15.0%
!!! ATTAATCACAATTTTTTTTC+TGG + chr4_1:53898580-53898599 Msa0555880:intron 15.0%
!! ATTATTATTTCCATTTGAAT+CGG - chr4_1:53899001-53899020 None:intergenic 15.0%
!!! GTTTTAATTCTTATCAAATT+TGG - chr4_1:53899099-53899118 None:intergenic 15.0%
!! TGATAAGAATTAAAACTTTA+AGG + chr4_1:53899103-53899122 Msa0555880:intron 15.0%
!!! TTATCATTTTTTTTTATTGG+TGG + chr4_1:53899544-53899563 Msa0555880:intron 15.0%
!! TTTGTTTGTTTATTTGATAT+TGG - chr4_1:53900109-53900128 None:intergenic 15.0%
!!! TTTTTTTATCTGTATTTGGA+TGG + chr4_1:53890599-53890618 Msa0555880:intron 20.0%
!!! TTTTTTATCTGTATTTGGAT+GGG + chr4_1:53890600-53890619 Msa0555880:intron 20.0%
!!! GTTTATATATTTTCGAGTTA+GGG + chr4_1:53890659-53890678 Msa0555880:intron 20.0%
!!! AATGTCTCAATTTTTAGTAA+AGG + chr4_1:53891000-53891019 Msa0555880:intron 20.0%
!! TAAATTTGTATTAATGTGGT+TGG + chr4_1:53891034-53891053 Msa0555880:intron 20.0%
!!! TATTTTCATTTGTATCTCTT+TGG + chr4_1:53891469-53891488 Msa0555880:intron 20.0%
!!! TTTTATGGACTAATAGAAAA+AGG + chr4_1:53891547-53891566 Msa0555880:intron 20.0%
!!! TTTATGGACTAATAGAAAAA+GGG + chr4_1:53891548-53891567 Msa0555880:intron 20.0%
!! AATATAGAGCTACATATATA+TGG + chr4_1:53891623-53891642 Msa0555880:intron 20.0%
!!! CATTAATTTGATTTTTGAAG+TGG - chr4_1:53891690-53891709 None:intergenic 20.0%
!!! CTGCTATTTCATATTATTAT+TGG - chr4_1:53891959-53891978 None:intergenic 20.0%
!! CGGTTATATTTATTACTAAT+AGG - chr4_1:53892059-53892078 None:intergenic 20.0%
!! TTTGTTCACAAAATTGAATT+TGG + chr4_1:53892141-53892160 Msa0555880:intron 20.0%
!!! ACATAATTTCAATTTTCATC+AGG - chr4_1:53892678-53892697 None:intergenic 20.0%
!! GAATAGTATTATTCATCATT+TGG + chr4_1:53892745-53892764 Msa0555880:intron 20.0%
!! TAACATTTACAAATGATGTT+GGG - chr4_1:53892776-53892795 None:intergenic 20.0%
!! ATTTGTAAATGTTACATGTT+GGG + chr4_1:53892782-53892801 Msa0555880:intron 20.0%
!!! ACATTTTAGAAGTATATACA+TGG - chr4_1:53892813-53892832 None:intergenic 20.0%
!! ATAGTTTATTCTATGACAAT+TGG - chr4_1:53892858-53892877 None:intergenic 20.0%
!! AGATACAATAAAACAGTAAA+AGG - chr4_1:53892924-53892943 None:intergenic 20.0%
!! TTATCTAATAAGAGAAAAAG+AGG - chr4_1:53893134-53893153 None:intergenic 20.0%
!!! TTTCTCAATTCTTTTAGAAA+GGG - chr4_1:53893167-53893186 None:intergenic 20.0%
!! AATATGTTTAAAGAATGCAT+AGG + chr4_1:53893210-53893229 Msa0555880:intron 20.0%
!! ATATGTTTAAAGAATGCATA+GGG + chr4_1:53893211-53893230 Msa0555880:intron 20.0%
!! TATGGAAAAAAGACTTTATT+AGG - chr4_1:53893246-53893265 None:intergenic 20.0%
!!! CTTGTTATAATATCTTAATG+AGG - chr4_1:53893395-53893414 None:intergenic 20.0%
!! CTCATTAAGATATTATAACA+AGG + chr4_1:53893393-53893412 Msa0555880:intron 20.0%
!!! AGTTTTAAACCTAATTTCTT+GGG + chr4_1:53893617-53893636 Msa0555880:intron 20.0%
!!! AAAGATATGCATAAGTTTTA+GGG - chr4_1:53894030-53894049 None:intergenic 20.0%
!!! TGCATAAGTATTTTTTGTTA+TGG - chr4_1:53894053-53894072 None:intergenic 20.0%
!! AATACTTATGCATATCTTAT+TGG + chr4_1:53894061-53894080 Msa0555880:intron 20.0%
!! TTATAAATCAAAGTAGAAGA+TGG - chr4_1:53894156-53894175 None:intergenic 20.0%
!! TAAAAATAATAGTACCTTCA+TGG - chr4_1:53894622-53894641 None:intergenic 20.0%
!! AAAACAGTATTCACTAAATA+AGG - chr4_1:53895267-53895286 None:intergenic 20.0%
!! AATATATTGAAAGAATGCAT+AGG + chr4_1:53895548-53895567 Msa0555880:intron 20.0%
!! ATATATTGAAAGAATGCATA+GGG + chr4_1:53895549-53895568 Msa0555880:intron 20.0%
!! TAAGTTATAACATCTCAATA+AGG - chr4_1:53895737-53895756 None:intergenic 20.0%
!!! ATACACTTTTAAGTGATAAT+GGG + chr4_1:53895973-53895992 Msa0555880:intron 20.0%
!! ATATCTTATACTATTCGAAA+AGG - chr4_1:53896337-53896356 None:intergenic 20.0%
!! AAACTATCCTTCATATAAAA+GGG - chr4_1:53896416-53896435 None:intergenic 20.0%
!! AAAACTATCCTTCATATAAA+AGG - chr4_1:53896417-53896436 None:intergenic 20.0%
!! AAACTATCCTTCATATAAAA+GGG - chr4_1:53896416-53896435 None:intergenic 20.0%
!! AAAACTATCCTTCATATAAA+AGG - chr4_1:53896417-53896436 None:intergenic 20.0%
!! AAACAAGTCTATATACAATA+AGG - chr4_1:53896951-53896970 None:intergenic 20.0%
!!! TTATTGTATATAGACTTGTT+TGG + chr4_1:53896950-53896969 Msa0555880:intron 20.0%
!!! TATTGTATATAGACTTGTTT+GGG + chr4_1:53896951-53896970 Msa0555880:intron 20.0%
!! GATTAATAGATATAAATGAG+AGG - chr4_1:53897056-53897075 None:intergenic 20.0%
!!! TTTTTTGATATCTCAAAGAT+TGG - chr4_1:53897239-53897258 None:intergenic 20.0%
!!! GAATATTTTAAAATTGTCCA+TGG - chr4_1:53897297-53897316 None:intergenic 20.0%
!!! ATTTATGTTGCTATTTGAAA+AGG + chr4_1:53897622-53897641 Msa0555880:intron 20.0%
!!! TTATCCTTGTGTATTTTTTT+AGG + chr4_1:53897900-53897919 Msa0555880:intron 20.0%
!!! TATCCTTGTGTATTTTTTTA+GGG + chr4_1:53897901-53897920 Msa0555880:intron 20.0%
!! AAAAAAGAAAGAAAAGAGAA+GGG - chr4_1:53898086-53898105 None:intergenic 20.0%
!! AAAAAAAGAAAGAAAAGAGA+AGG - chr4_1:53898087-53898106 None:intergenic 20.0%
!!! TAAAGATAAGAGTTTTATAG+AGG - chr4_1:53898217-53898236 None:intergenic 20.0%
!!! CCAGTTAATATTTTTATTTG+TGG - chr4_1:53898363-53898382 None:intergenic 20.0%
!! CCACAAATAAAAATATTAAC+TGG + chr4_1:53898360-53898379 Msa0555880:intron 20.0%
!! AATGTACATATAAAAGAAGA+TGG - chr4_1:53898542-53898561 None:intergenic 20.0%
!!! ATATTTGTGATTTAGCATTT+TGG + chr4_1:53898799-53898818 Msa0555880:intron 20.0%
!! AAAACAAAATTAACACTCAA+AGG - chr4_1:53898928-53898947 None:intergenic 20.0%
!! TTATTATTTCCATTTGAATC+GGG - chr4_1:53899000-53899019 None:intergenic 20.0%
!! ACATAATAATCAAATGCATA+AGG - chr4_1:53899134-53899153 None:intergenic 20.0%
!! TTATGCATTTGATTATTATG+TGG + chr4_1:53899133-53899152 Msa0555880:intron 20.0%
!!! CATTTTTGGATATAATTTAC+TGG + chr4_1:53899277-53899296 Msa0555880:intron 20.0%
!! GTTAAATTATATTAACACCT+TGG + chr4_1:53899413-53899432 Msa0555880:intron 20.0%
!! TGGATTACTTAATTATGATT+TGG + chr4_1:53899885-53899904 Msa0555880:intron 20.0%
!! TTTAGTTATTTGTCAACAAA+GGG - chr4_1:53900144-53900163 None:intergenic 20.0%
!! AGATACAATAAAACAGTAAA+AGG - chr4_1:53892924-53892943 None:intergenic 20.0%
! GTTAAATGAGAATGAATGTA+TGG - chr4_1:53890357-53890376 None:intergenic 25.0%
! ACTCGAAAATATATAAACGT+TGG - chr4_1:53890657-53890676 None:intergenic 25.0%
!!! CGTTTATATATTTTCGAGTT+AGG + chr4_1:53890658-53890677 Msa0555880:intron 25.0%
!! TTTTGAACATCTATGTATCT+TGG + chr4_1:53890858-53890877 Msa0555880:intron 25.0%
! AATCTTAAGTGTATGCTAAA+TGG + chr4_1:53890922-53890941 Msa0555880:intron 25.0%
! ATCTTAAGTGTATGCTAAAT+GGG + chr4_1:53890923-53890942 Msa0555880:intron 25.0%
! TACTAAAAATTGAGACATTG+AGG - chr4_1:53890999-53891018 None:intergenic 25.0%
! ATTAGATCAGTAAATTGACA+AGG - chr4_1:53891217-53891236 None:intergenic 25.0%
!!! GAATTATTTTATAGCAGTAG+CGG - chr4_1:53891260-53891279 None:intergenic 25.0%
! TATCACGATAAAGTATGAAA+TGG - chr4_1:53891322-53891341 None:intergenic 25.0%
! ATTTGACAGAAAAATAAAGC+AGG + chr4_1:53891592-53891611 Msa0555880:intron 25.0%
!! ATGTAGCTCTATATTTAACA+TGG - chr4_1:53891618-53891637 None:intergenic 25.0%
! ATATGGAAATAATTCTGTCA+TGG + chr4_1:53891640-53891659 Msa0555880:intron 25.0%
!! TCTACATCATTTGTATTGAT+TGG - chr4_1:53891839-53891858 None:intergenic 25.0%
!!! TTAAAGCGAGTTGATTTAAA+TGG - chr4_1:53892028-53892047 None:intergenic 25.0%
! ATTTAATGACCTAACATTAG+TGG + chr4_1:53892092-53892111 Msa0555880:intron 25.0%
!!! TATGTGAAGTTATTTTACGA+TGG + chr4_1:53892557-53892576 Msa0555880:intron 25.0%
! AACAATGAGGTCTTAAAAAT+AGG - chr4_1:53892587-53892606 None:intergenic 25.0%
! AATAAAAGTGATGAACAATG+AGG - chr4_1:53892600-53892619 None:intergenic 25.0%
!!! ACTTTTATTTGCTACATGTT+GGG + chr4_1:53892611-53892630 Msa0555880:intron 25.0%
!!! ACATTTTAGAAGTATAGACT+TGG - chr4_1:53892642-53892661 None:intergenic 25.0%
! TATTCGTATCTAGATTTCAT+CGG - chr4_1:53892730-53892749 None:intergenic 25.0%
! GTAACATTTACAAATGATGT+TGG - chr4_1:53892777-53892796 None:intergenic 25.0%
! CATTTGTAAATGTTACATGT+TGG + chr4_1:53892781-53892800 Msa0555880:intron 25.0%
!! GATTGTTTGTTTGTTAGTAT+TGG + chr4_1:53893003-53893022 Msa0555880:intron 25.0%
!!! AAAGAGGTATTAGATAGAAA+AGG - chr4_1:53893118-53893137 None:intergenic 25.0%
!!! CTTTCTCAATTCTTTTAGAA+AGG - chr4_1:53893168-53893187 None:intergenic 25.0%
!!! CTTCGAAATTTTAAAAAGCT+AGG + chr4_1:53893280-53893299 Msa0555880:intron 25.0%
! GTTATAATATCTTAATGAGG+AGG - chr4_1:53893392-53893411 None:intergenic 25.0%
!!! GCAATTGTTGTTTTTAGTTT+TGG + chr4_1:53893492-53893511 Msa0555880:intron 25.0%
! AATAAATTCTAATGCAAAGC+TGG - chr4_1:53893540-53893559 None:intergenic 25.0%
!! CAAGAAATTAGGTTTAAAAC+TGG - chr4_1:53893618-53893637 None:intergenic 25.0%
!!! CAGTTTTAAACCTAATTTCT+TGG + chr4_1:53893616-53893635 Msa0555880:intron 25.0%
! AAATTCAAACCCAAGAAATT+AGG - chr4_1:53893629-53893648 None:intergenic 25.0%
!! TTCTGCTATACATCATTTTA+TGG - chr4_1:53893680-53893699 None:intergenic 25.0%
! ATAAAGAGGTTAATCTGTAT+TGG + chr4_1:53893699-53893718 Msa0555880:intron 25.0%
! ATATTTCATCAGTTGTATTC+TGG - chr4_1:53893876-53893895 None:intergenic 25.0%
! AACTGATGAAATATGATACT+TGG + chr4_1:53893882-53893901 Msa0555880:intron 25.0%
!! GAAAGATATGCATAAGTTTT+AGG - chr4_1:53894031-53894050 None:intergenic 25.0%
! AAGCAAGATATACAAGAAAT+AGG - chr4_1:53894197-53894216 None:intergenic 25.0%
!!! ATAACTTTCAAGTATTGATC+TGG + chr4_1:53894311-53894330 Msa0555880:intron 25.0%
! AATACTTCAAAGAGTTCTTT+AGG - chr4_1:53894349-53894368 None:intergenic 25.0%
! AATTCATCATCAAAACCATT+TGG + chr4_1:53894446-53894465 Msa0555880:five_prime_UTR 25.0%
! TTGAGAGTTTCTTCTAAATT+AGG + chr4_1:53894800-53894819 Msa0555880:intron 25.0%
!! GGAACTTTTTATATTAGTGT+TGG - chr4_1:53895125-53895144 None:intergenic 25.0%
! TCTTATGACAATTTGCATAA+GGG - chr4_1:53895193-53895212 None:intergenic 25.0%
! ATCTTATGACAATTTGCATA+AGG - chr4_1:53895194-53895213 None:intergenic 25.0%
!! ATTTCTTTGTTTGTTAGCAA+TGG + chr4_1:53895352-53895371 Msa0555880:intron 25.0%
!! TTTCTTTGTTTGTTAGCAAT+GGG + chr4_1:53895353-53895372 Msa0555880:intron 25.0%
! TATATTGAAAGAATGCATAG+GGG + chr4_1:53895550-53895569 Msa0555880:intron 25.0%
! AAAAAGACTTCAATAGGAAA+CGG - chr4_1:53895581-53895600 None:intergenic 25.0%
! TATGTTGTATAGTAAGTATG+TGG - chr4_1:53895604-53895623 None:intergenic 25.0%
!!! CATACACTTTTAAGTGATAA+TGG + chr4_1:53895972-53895991 Msa0555880:intron 25.0%
!!! ACGAAATAAACATGTTTTGA+AGG + chr4_1:53896089-53896108 Msa0555880:intron 25.0%
! ATCTACATATAGCATAGTAA+TGG + chr4_1:53896161-53896180 Msa0555880:intron 25.0%
!! TGATCTTTGTATTTAGTTCA+AGG + chr4_1:53896262-53896281 Msa0555880:intron 25.0%
! TCACCAAATTTATCAAGATT+TGG + chr4_1:53896363-53896382 Msa0555880:intron 25.0%
! CACCAAATTTATCAAGATTT+GGG + chr4_1:53896364-53896383 Msa0555880:intron 25.0%
! TACCCAAATCTTGATAAATT+TGG - chr4_1:53896369-53896388 None:intergenic 25.0%
! CCAAGAAGAATAGATAATAA+CGG - chr4_1:53896512-53896531 None:intergenic 25.0%
! CGTTATTATCTATTCTTCTT+GGG + chr4_1:53896510-53896529 Msa0555880:intron 25.0%
! GTTATTATCTATTCTTCTTG+GGG + chr4_1:53896511-53896530 Msa0555880:intron 25.0%
! TGAAATATCACATCAAATTC+TGG - chr4_1:53896605-53896624 None:intergenic 25.0%
! GGTCAAACATATGATTTATT+AGG - chr4_1:53896718-53896737 None:intergenic 25.0%
!!! CTCTAAGTTTGCTATATATA+TGG - chr4_1:53896739-53896758 None:intergenic 25.0%
!!! AATTGCCATTTATCGTATTT+TGG - chr4_1:53896799-53896818 None:intergenic 25.0%
! TCTATATACAATAAGGAGAA+TGG - chr4_1:53896944-53896963 None:intergenic 25.0%
! TGATACTTCAAAAATCTTGA+TGG + chr4_1:53897269-53897288 Msa0555880:intron 25.0%
! TGAGTGCATATAAATCTAAT+GGG - chr4_1:53897405-53897424 None:intergenic 25.0%
! TTGAGTGCATATAAATCTAA+TGG - chr4_1:53897406-53897425 None:intergenic 25.0%
! CTACTTAGAAATAACTGTAT+TGG - chr4_1:53897669-53897688 None:intergenic 25.0%
!!! ATCCTTGTGTATTTTTTTAG+GGG + chr4_1:53897902-53897921 Msa0555880:intron 25.0%
! AATGACATAAAGATAAGCAT+TGG - chr4_1:53898008-53898027 None:intergenic 25.0%
! TCCATAGTGTTAATATTATG+TGG + chr4_1:53898029-53898048 Msa0555880:intron 25.0%
! ACCACATAATATTAACACTA+TGG - chr4_1:53898033-53898052 None:intergenic 25.0%
!!! GGTTTTATTTTAGTATGAAG+CGG - chr4_1:53898172-53898191 None:intergenic 25.0%
!!! ATTTTTTAGACTGTCATTTC+TGG + chr4_1:53898258-53898277 Msa0555880:intron 25.0%
!! TTTTATTGTGAATATCAAGG+AGG - chr4_1:53898339-53898358 None:intergenic 25.0%
!!! GTTCTTTTTCACTATTTTTG+AGG + chr4_1:53898431-53898450 Msa0555880:intron 25.0%
!!! CTATATTTTTACAAGAAACG+AGG - chr4_1:53898510-53898529 None:intergenic 25.0%
! ATGCTAAATCACAAATATAG+AGG - chr4_1:53898797-53898816 None:intergenic 25.0%
! TTCTAATGACATGTTAATGA+AGG + chr4_1:53898890-53898909 Msa0555880:intron 25.0%
! AAGATGATAATCTGATCTAA+AGG + chr4_1:53899024-53899043 Msa0555880:intron 25.0%
!! GTAAATCAACGATTTTTGAA+TGG + chr4_1:53899194-53899213 Msa0555880:intron 25.0%
!! GTTTAGAAAAGTTGCATTTT+TGG + chr4_1:53899263-53899282 Msa0555880:intron 25.0%
!!! TTTTTTATGCAATAAGTCCA+AGG - chr4_1:53899433-53899452 None:intergenic 25.0%
! TTCAAACATACTTTATGACT+TGG + chr4_1:53899495-53899514 Msa0555880:intron 25.0%
!! AAAATGTTAATAGAAAGTGC+AGG - chr4_1:53899660-53899679 None:intergenic 25.0%
!! CAATTTCTAACTGATTCAAA+TGG + chr4_1:53899835-53899854 Msa0555880:CDS 25.0%
! CTTTAGTTATTTGTCAACAA+AGG - chr4_1:53900145-53900164 None:intergenic 25.0%
! GCGAAGAAACATAATTAAAA+TGG - chr4_1:53900500-53900519 None:intergenic 25.0%
!! ATGACAATTTTTGTATCATC+TGG + chr4_1:53900611-53900630 Msa0555880:intron 25.0%
!! AAAGAAAAAGGTATCCGAAA+AGG - chr4_1:53890319-53890338 None:intergenic 30.0%
TAGGAAGAAGAGAAAGAAAA+AGG - chr4_1:53890331-53890350 None:intergenic 30.0%
TCTATATGAGAGAAGAACAA+TGG - chr4_1:53890480-53890499 None:intergenic 30.0%
GTTGATGTTTCTTCAAAAGA+CGG + chr4_1:53890742-53890761 Msa0555880:intron 30.0%
TAAAAATTGAGACATTGAGG+TGG - chr4_1:53890996-53891015 None:intergenic 30.0%
TAATGTGGTTGGATATGTAT+TGG + chr4_1:53891045-53891064 Msa0555880:intron 30.0%
! GTAAATTGACAAGGTTAGTT+AGG - chr4_1:53891208-53891227 None:intergenic 30.0%
GATATCAAACATAATACTCC+AGG - chr4_1:53891365-53891384 None:intergenic 30.0%
!!! TAGTTTTGACAAAATACTCC+AGG - chr4_1:53891428-53891447 None:intergenic 30.0%
ACAAATTGACTGTGTCAAAT+TGG + chr4_1:53891773-53891792 Msa0555880:intron 30.0%
ATTGGTCGAGAATAAGATTA+TGG + chr4_1:53891791-53891810 Msa0555880:intron 30.0%
TTGGTCGAGAATAAGATTAT+GGG + chr4_1:53891792-53891811 Msa0555880:intron 30.0%
GGCAAATAGTAACATATCAA+AGG + chr4_1:53891813-53891832 Msa0555880:intron 30.0%
ATTGGTATTGCCTAAAAATG+CGG - chr4_1:53891941-53891960 None:intergenic 30.0%
ATAGATTGCAATTTGCAAGT+CGG - chr4_1:53891984-53892003 None:intergenic 30.0%
!! GTTCACAATCAACTGATTTT+GGG - chr4_1:53892211-53892230 None:intergenic 30.0%
!! TGTTCACAATCAACTGATTT+TGG - chr4_1:53892212-53892231 None:intergenic 30.0%
GTTGATTGTGAACATGAATA+TGG + chr4_1:53892218-53892237 Msa0555880:intron 30.0%
TTTCAATTCCATACTGATCA+AGG + chr4_1:53892295-53892314 Msa0555880:intron 30.0%
TAAATTGATAGAGACTGTCA+TGG - chr4_1:53892507-53892526 None:intergenic 30.0%
!! CACTTTTATTTGCTACATGT+TGG + chr4_1:53892610-53892629 Msa0555880:intron 30.0%
TTCTATGACAATTGGCATAA+GGG - chr4_1:53892850-53892869 None:intergenic 30.0%
ATTCTATGACAATTGGCATA+AGG - chr4_1:53892851-53892870 None:intergenic 30.0%
CTACTCATCAAGCTTAATAA+AGG - chr4_1:53892881-53892900 None:intergenic 30.0%
! TTGTTTGTTAGTATTGGATG+TGG + chr4_1:53893009-53893028 Msa0555880:intron 30.0%
GTTAGACATGATGAAAACAA+AGG + chr4_1:53893080-53893099 Msa0555880:five_prime_UTR 30.0%
!! TCAATTCTTTTAGAAAGGGT+TGG - chr4_1:53893163-53893182 None:intergenic 30.0%
GAAGTTGTATAGCAAGTATA+TGG - chr4_1:53893264-53893283 None:intergenic 30.0%
TGATGTATAGCAGAATAAAG+AGG + chr4_1:53893685-53893704 Msa0555880:intron 30.0%
GTTAATCTGTATTGGATAGT+TGG + chr4_1:53893707-53893726 Msa0555880:intron 30.0%
AGTTACATTTGAGCATTCAT+AGG + chr4_1:53893937-53893956 Msa0555880:intron 30.0%
AACTAACAGACAGAACATAT+TGG + chr4_1:53894542-53894561 Msa0555880:five_prime_UTR 30.0%
ACATATTGGACTTCAATTCT+TGG + chr4_1:53894556-53894575 Msa0555880:five_prime_UTR 30.0%
!!! GGTTTCAATTTTTAGTGAGT+TGG - chr4_1:53894707-53894726 None:intergenic 30.0%
!!! CTTGGTTGTTTTTTCACTAT+TGG - chr4_1:53894728-53894747 None:intergenic 30.0%
TGTAAGCAATATAGACTACT+TGG - chr4_1:53894746-53894765 None:intergenic 30.0%
CACATCTATTAGAAATGCTT+AGG - chr4_1:53895038-53895057 None:intergenic 30.0%
AGCATTTCTAATAGATGTGA+TGG + chr4_1:53895039-53895058 Msa0555880:intron 30.0%
GCATTTCTAATAGATGTGAT+GGG + chr4_1:53895040-53895059 Msa0555880:intron 30.0%
! TTGACAACTTTTGTATCTTC+TGG + chr4_1:53895099-53895118 Msa0555880:intron 30.0%
TTGTCTAACAACAGAAAAAG+AGG - chr4_1:53895483-53895502 None:intergenic 30.0%
ATGTGGAAAAAGACTTCAAT+AGG - chr4_1:53895587-53895606 None:intergenic 30.0%
GTTATAACATCTCAATAAGG+AGG - chr4_1:53895734-53895753 None:intergenic 30.0%
TTTACCTTTGACTATGTGAT+AGG + chr4_1:53895871-53895890 Msa0555880:intron 30.0%
AATTTAAAAAAAGGGCAACC+TGG - chr4_1:53895937-53895956 None:intergenic 30.0%
! CACTTAAAAGTGTATGAGAA+AGG - chr4_1:53895968-53895987 None:intergenic 30.0%
TACAGCATCAACATTGTATT+TGG + chr4_1:53896003-53896022 Msa0555880:intron 30.0%
ACAGCATCAACATTGTATTT+GGG + chr4_1:53896004-53896023 Msa0555880:intron 30.0%
ACATATAGCATAGTAATGGT+AGG + chr4_1:53896165-53896184 Msa0555880:intron 30.0%
CCGTTATTATCTATTCTTCT+TGG + chr4_1:53896509-53896528 Msa0555880:intron 30.0%
GACTAATTATCAAGTAACCT+AGG - chr4_1:53896556-53896575 None:intergenic 30.0%
TATTTCAGTGACGTATCAAA+TGG + chr4_1:53896618-53896637 Msa0555880:intron 30.0%
AGTAGCCAAAATACGATAAA+TGG + chr4_1:53896791-53896810 Msa0555880:intron 30.0%
GGGAAATTAAAATCACTTCA+TGG + chr4_1:53896891-53896910 Msa0555880:intron 30.0%
CTTCATGGATTTACTAATCT+TGG + chr4_1:53896906-53896925 Msa0555880:intron 30.0%
TATACAATAAGGAGAATGGA+GGG - chr4_1:53896940-53896959 None:intergenic 30.0%
ATATACAATAAGGAGAATGG+AGG - chr4_1:53896941-53896960 None:intergenic 30.0%
! GACTTGTTTGGGAAATTTAA+AGG + chr4_1:53896962-53896981 Msa0555880:intron 30.0%
AATATTAATAGTCCGAGTCT+TGG - chr4_1:53897014-53897033 None:intergenic 30.0%
CTAAATTAGCTCACCTAAAT+TGG + chr4_1:53897095-53897114 Msa0555880:intron 30.0%
AAGTCATACTTGATTGAACT+CGG - chr4_1:53897201-53897220 None:intergenic 30.0%
TACCCCTAAAAAAATACACA+AGG - chr4_1:53897907-53897926 None:intergenic 30.0%
TGATGAAAAAAGAAGAGAGA+AGG - chr4_1:53898142-53898161 None:intergenic 30.0%
!!! TTATTTTAGTATGAAGCGGT+CGG - chr4_1:53898168-53898187 None:intergenic 30.0%
!! AGAGTTTTATAGAGGAGAAA+GGG - chr4_1:53898209-53898228 None:intergenic 30.0%
!! AAGAGTTTTATAGAGGAGAA+AGG - chr4_1:53898210-53898229 None:intergenic 30.0%
!!! GGGTTTTATTGTGAATATCA+AGG - chr4_1:53898342-53898361 None:intergenic 30.0%
! ATTTGAAGGAATGTTGTTTG+AGG + chr4_1:53898401-53898420 Msa0555880:intron 30.0%
! GTTTTATCCGATGCAAAAAT+TGG - chr4_1:53898462-53898481 None:intergenic 30.0%
GAGTATCAACAAAGACAATA+TGG - chr4_1:53898973-53898992 None:intergenic 30.0%
TTGGATATAATTTACTGGTG+TGG + chr4_1:53899282-53899301 Msa0555880:intron 30.0%
TGGATATAATTTACTGGTGT+GGG + chr4_1:53899283-53899302 Msa0555880:intron 30.0%
TGGTGGTAAATAAGTCTAAA+TGG + chr4_1:53899561-53899580 Msa0555880:intron 30.0%
! CTGATAACTTTGTTTCTTCT+TGG + chr4_1:53899691-53899710 Msa0555880:intron 30.0%
!! ACTTTGTTTCTTCTTGGTTT+TGG + chr4_1:53899697-53899716 Msa0555880:intron 30.0%
!!! TTTCTTCTTGGTTTTGGATT+AGG + chr4_1:53899703-53899722 Msa0555880:intron 30.0%
!!! TTCTTCTTGGTTTTGGATTA+GGG + chr4_1:53899704-53899723 Msa0555880:intron 30.0%
ATTTACGAACTTCTTCACTA+TGG + chr4_1:53899860-53899879 Msa0555880:intron 30.0%
!! TTGATATTGGTGCTAAATTC+AGG - chr4_1:53900096-53900115 None:intergenic 30.0%
TTTGTCAACAAAGGGAAATT+TGG - chr4_1:53900136-53900155 None:intergenic 30.0%
GATGATTAATTCGATCAGTT+TGG + chr4_1:53900173-53900192 Msa0555880:intron 30.0%
! ATCAGTTTGGTAATATCTGT+TGG + chr4_1:53900186-53900205 Msa0555880:intron 30.0%
! TCAGTTTGGTAATATCTGTT+GGG + chr4_1:53900187-53900206 Msa0555880:intron 30.0%
ACTTATCAAGAACATAAAGC+AGG - chr4_1:53900241-53900260 None:intergenic 30.0%
! ATGTAAGCATTCCTTTTAAG+AGG - chr4_1:53900326-53900345 None:intergenic 30.0%
! TTTTGCAGTTAATATCCTTG+AGG + chr4_1:53900418-53900437 Msa0555880:intron 30.0%
TTTGCAGTTAATATCCTTGA+GGG + chr4_1:53900419-53900438 Msa0555880:intron 30.0%
! CACATCTATTTGAAATGCTT+GGG - chr4_1:53900553-53900572 None:intergenic 30.0%
! TCACATCTATTTGAAATGCT+TGG - chr4_1:53900554-53900573 None:intergenic 30.0%
AGCATTTCAAATAGATGTGA+TGG + chr4_1:53900554-53900573 Msa0555880:intron 30.0%
GCATTTCAAATAGATGTGAT+GGG + chr4_1:53900555-53900574 Msa0555880:intron 30.0%
TTCTATGACAATTGGCATAA+GGG - chr4_1:53892850-53892869 None:intergenic 30.0%
ATTCTATGACAATTGGCATA+AGG - chr4_1:53892851-53892870 None:intergenic 30.0%
AGAGCTTATTCTATGACAAT+TGG - chr4_1:53900713-53900732 None:intergenic 30.0%
! TATCTGATGTGGTTTAGTTT+GGG + chr4_1:53900824-53900843 Msa0555880:three_prime_UTR 30.0%
GTTAGACATGATGAAAACAA+AGG + chr4_1:53893080-53893099 Msa0555880:five_prime_UTR 30.0%
GTGATTGTGTTCTTAAATGG+AGG - chr4_1:53890455-53890474 None:intergenic 35.0%
GTGGTGATTGTGTTCTTAAA+TGG - chr4_1:53890458-53890477 None:intergenic 35.0%
ATATGAGAGAAGAACAATGG+TGG - chr4_1:53890477-53890496 None:intergenic 35.0%
! CTCTCATATAGATTTTGCGA+TGG + chr4_1:53890488-53890507 Msa0555880:five_prime_UTR 35.0%
! TCATATAGATTTTGCGATGG+TGG + chr4_1:53890491-53890510 Msa0555880:five_prime_UTR 35.0%
GGAAATAATTCTGTCATGGA+AGG + chr4_1:53891644-53891663 Msa0555880:intron 35.0%
TGAAGTGGTAATCATCAAAC+AGG - chr4_1:53891675-53891694 None:intergenic 35.0%
AATATGCAATAGCAACTTGC+AGG + chr4_1:53891914-53891933 Msa0555880:intron 35.0%
GACTTGCAAATTGCAATCTA+TGG + chr4_1:53891983-53892002 Msa0555880:intron 35.0%
AAGTAGCTTCCACTAATGTT+AGG - chr4_1:53892104-53892123 None:intergenic 35.0%
GATAACGTAAACACATGACA+AGG - chr4_1:53892172-53892191 None:intergenic 35.0%
TGTTTACGTTATCGATGTCA+TGG + chr4_1:53892179-53892198 Msa0555880:intron 35.0%
GTATTTAACCTTCTGCTTTC+TGG + chr4_1:53892428-53892447 Msa0555880:intron 35.0%
TAGATTTCATCGGATGCATA+AGG - chr4_1:53892720-53892739 None:intergenic 35.0%
TATTGGATGTGGTTGAGTTT+GGG + chr4_1:53893020-53893039 Msa0555880:five_prime_UTR 35.0%
! GTGACTTGTGAGCATTTAAA+AGG + chr4_1:53893310-53893329 Msa0555880:intron 35.0%
TCCAACTGCAAAAAATGAAG+AGG + chr4_1:53893419-53893438 Msa0555880:intron 35.0%
!!! TCCTCTTCATTTTTTGCAGT+TGG - chr4_1:53893423-53893442 None:intergenic 35.0%
TTGAAGGTTTGCATATGTCT+GGG - chr4_1:53893751-53893770 None:intergenic 35.0%
TTTGAAGGTTTGCATATGTC+TGG - chr4_1:53893752-53893771 None:intergenic 35.0%
CATTTGAGCATTCATAGGTT+CGG + chr4_1:53893942-53893961 Msa0555880:intron 35.0%
CGAATGCATTCTTACTCTAT+TGG + chr4_1:53894233-53894252 Msa0555880:intron 35.0%
TGCATTCTTACTCTATTGGT+TGG + chr4_1:53894237-53894256 Msa0555880:intron 35.0%
!! TATTGGTTGGCTTATGATAC+TGG + chr4_1:53894250-53894269 Msa0555880:intron 35.0%
!! ATTGGTTGGCTTATGATACT+GGG + chr4_1:53894251-53894270 Msa0555880:intron 35.0%
!! ACTTTCAAGTATTGATCTGG+AGG + chr4_1:53894314-53894333 Msa0555880:intron 35.0%
!! TCTTTGAAGTATTGATCTGC+AGG + chr4_1:53894356-53894375 Msa0555880:intron 35.0%
TCATCATCAAAACCATTTGG+TGG + chr4_1:53894449-53894468 Msa0555880:five_prime_UTR 35.0%
CATCATCAAAACCATTTGGT+GGG + chr4_1:53894450-53894469 Msa0555880:five_prime_UTR 35.0%
CATATACGCTATACTACCTT+CGG - chr4_1:53894510-53894529 None:intergenic 35.0%
TATTGGACTTCAATTCTTGG+AGG + chr4_1:53894559-53894578 Msa0555880:five_prime_UTR 35.0%
GGAGGAAATTCACAAAGATA+AGG + chr4_1:53894577-53894596 Msa0555880:five_prime_UTR 35.0%
!!! CTGATTGCTCTTGTTTTTTG+TGG + chr4_1:53894865-53894884 Msa0555880:intron 35.0%
TGGTTAATATGCACATTTCC+AGG + chr4_1:53894885-53894904 Msa0555880:intron 35.0%
GGTTAATATGCACATTTCCA+GGG + chr4_1:53894886-53894905 Msa0555880:intron 35.0%
TACAGTATGTGAATCTAGCT+GGG - chr4_1:53894951-53894970 None:intergenic 35.0%
! AATAGATGTGATGGGACAAA+AGG + chr4_1:53895048-53895067 Msa0555880:intron 35.0%
CAAAAGGCTTATTAGCATAG+TGG + chr4_1:53895064-53895083 Msa0555880:intron 35.0%
! TGTTTGTTAGCAATGGGATA+TGG + chr4_1:53895359-53895378 Msa0555880:intron 35.0%
AATGGGATATGGTTGAGTTT+GGG + chr4_1:53895370-53895389 Msa0555880:five_prime_UTR 35.0%
! GTGACTTGTGAGCATTTAAA+TGG + chr4_1:53893310-53893329 Msa0555880:intron 35.0%
ATGCAACTGCAAAAATGAAG+AGG + chr4_1:53895804-53895823 Msa0555880:intron 35.0%
AGAGTCGAGTATTATAAGGT+GGG + chr4_1:53896113-53896132 Msa0555880:intron 35.0%
! TTAGTATATGCCTTGTTCCA+TGG + chr4_1:53896390-53896409 Msa0555880:intron 35.0%
! TTAGTATATGCCTTGTTCCA+TGG + chr4_1:53896390-53896409 Msa0555880:intron 35.0%
ATTATCTATTCTTCTTGGGG+TGG + chr4_1:53896514-53896533 Msa0555880:intron 35.0%
! CTATGATTTCCTCTTTTGAC+AGG + chr4_1:53896674-53896693 Msa0555880:five_prime_UTR 35.0%
CTCAATAAAGACAAGCAGTA+AGG + chr4_1:53896866-53896885 Msa0555880:intron 35.0%
ATAAAGACAAGCAGTAAGGA+AGG + chr4_1:53896870-53896889 Msa0555880:intron 35.0%
TAAAGACAAGCAGTAAGGAA+GGG + chr4_1:53896871-53896890 Msa0555880:intron 35.0%
CATGGATTTACTAATCTTGG+AGG + chr4_1:53896909-53896928 Msa0555880:intron 35.0%
ATACAATAAGGAGAATGGAG+GGG - chr4_1:53896939-53896958 None:intergenic 35.0%
!! TTAAAGGACTCAGAGGTATT+TGG + chr4_1:53896978-53896997 Msa0555880:intron 35.0%
! TGGTACTAGCTTAAACAAAG+AGG - chr4_1:53897569-53897588 None:intergenic 35.0%
! TTCTTGATGAAAAGCACATG+TGG + chr4_1:53897946-53897965 Msa0555880:intron 35.0%
AGAAAAGAGAAGGGTAAGAA+GGG - chr4_1:53898077-53898096 None:intergenic 35.0%
AAGAAAAGAGAAGGGTAAGA+AGG - chr4_1:53898078-53898097 None:intergenic 35.0%
TGAAAAAAGAAGAGAGAAGG+TGG - chr4_1:53898139-53898158 None:intergenic 35.0%
!! AGTTTTATAGAGGAGAAAGG+GGG - chr4_1:53898207-53898226 None:intergenic 35.0%
!! GAGTTTTATAGAGGAGAAAG+GGG - chr4_1:53898208-53898227 None:intergenic 35.0%
TTGTAACTTGGTTTCGTCAA+TGG - chr4_1:53898309-53898328 None:intergenic 35.0%
! TTTTCACCTCAGCTATTTGA+AGG + chr4_1:53898387-53898406 Msa0555880:intron 35.0%
AACATTCCTTCAAATAGCTG+AGG - chr4_1:53898396-53898415 None:intergenic 35.0%
! GGATCTACCAATTTTTGCAT+CGG + chr4_1:53898452-53898471 Msa0555880:intron 35.0%
TACTCATATCCCGATTCAAA+TGG + chr4_1:53898988-53899007 Msa0555880:intron 35.0%
CTCATCATAACATGGGAAAT+TGG - chr4_1:53899060-53899079 None:intergenic 35.0%
AATGGCTCTCATCATAACAT+GGG - chr4_1:53899067-53899086 None:intergenic 35.0%
TAATGGCTCTCATCATAACA+TGG - chr4_1:53899068-53899087 None:intergenic 35.0%
ATTCTTATCAAATTTGGCCG+AGG - chr4_1:53899093-53899112 None:intergenic 35.0%
! ATGCTTTCAAGTACCTTTCT+TGG + chr4_1:53899159-53899178 Msa0555880:intron 35.0%
! AAGTACCTTTCTTGGACTTT+TGG + chr4_1:53899167-53899186 Msa0555880:intron 35.0%
GCTGTAAGTGAGGTAAATTT+GGG + chr4_1:53899517-53899536 Msa0555880:intron 35.0%
!!! TCTTCTTGGTTTTGGATTAG+GGG + chr4_1:53899705-53899724 Msa0555880:intron 35.0%
TTGAAAGTTGCAATGATGTC+AGG - chr4_1:53899741-53899760 None:intergenic 35.0%
GCAACTTTCAAAGTCATTGA+TGG + chr4_1:53899750-53899769 Msa0555880:CDS 35.0%
! CTATGAAGTTTTTCGTCGAA+TGG + chr4_1:53899792-53899811 Msa0555880:CDS 35.0%
AACTTTGCTCGCTAATATCT+TGG + chr4_1:53899936-53899955 Msa0555880:intron 35.0%
ACTTTGCTCGCTAATATCTT+GGG + chr4_1:53899937-53899956 Msa0555880:intron 35.0%
TGGTTGTTTAGCCTCTTAAA+AGG + chr4_1:53900312-53900331 Msa0555880:intron 35.0%
GAGAGAAAAAAACGTACAGT+AGG - chr4_1:53900478-53900497 None:intergenic 35.0%
! AATAGATGTGATGGGACAAA+AGG + chr4_1:53895048-53895067 Msa0555880:intron 35.0%
TTCTTTGTCAGTATCTGATG+TGG + chr4_1:53900813-53900832 Msa0555880:intron 35.0%
GTATCTGATGTGGTTTAGTT+TGG + chr4_1:53900823-53900842 Msa0555880:intron 35.0%
!! ATCTGATGTGGTTTAGTTTG+GGG + chr4_1:53900825-53900844 Msa0555880:three_prime_UTR 35.0%
GAGAATGAATGTATGGCTGT+AGG - chr4_1:53890350-53890369 None:intergenic 40.0%
GTTCTTAAATGGAGGTCGAA+CGG - chr4_1:53890447-53890466 None:intergenic 40.0%
!! TATAGATTTTGCGATGGTGG+AGG + chr4_1:53890494-53890513 Msa0555880:five_prime_UTR 40.0%
! GTTTTTACCATCTCGATCCT+CGG - chr4_1:53890540-53890559 None:intergenic 40.0%
TCGAGTTAGGGTTTCATAGA+AGG + chr4_1:53890671-53890690 Msa0555880:intron 40.0%
GATGTTTCTTCAAAAGACGG+AGG + chr4_1:53890745-53890764 Msa0555880:intron 40.0%
TCTACAAAACTCACATGCAG+AGG - chr4_1:53890828-53890847 None:intergenic 40.0%
TTGCAACTTGTGTGCATGAA+TGG - chr4_1:53891126-53891145 None:intergenic 40.0%
CCAGGAATAAAGATCAACAG+AGG - chr4_1:53891347-53891366 None:intergenic 40.0%
CCTCTGTTGATCTTTATTCC+TGG + chr4_1:53891344-53891363 Msa0555880:intron 40.0%
CACCATCACATGTAAGGAAT+GGG - chr4_1:53892321-53892340 None:intergenic 40.0%
AATACCTGCTCTGATGTTGA+AGG - chr4_1:53892413-53892432 None:intergenic 40.0%
CCAATTTACCAGAAAGCAGA+AGG - chr4_1:53892439-53892458 None:intergenic 40.0%
! CCTTCTGCTTTCTGGTAAAT+TGG + chr4_1:53892436-53892455 Msa0555880:intron 40.0%
ATTGATAGAGACTGTCATGG+TGG - chr4_1:53892504-53892523 None:intergenic 40.0%
GTATTGGATGTGGTTGAGTT+TGG + chr4_1:53893019-53893038 Msa0555880:intron 40.0%
ATTGGATGTGGTTGAGTTTG+GGG + chr4_1:53893021-53893040 Msa0555880:five_prime_UTR 40.0%
! AATCGCATATGCAGCTTTGA+AGG - chr4_1:53893767-53893786 None:intergenic 40.0%
TCAAATCAAGTCCAAGTCCA+CGG - chr4_1:53893794-53893813 None:intergenic 40.0%
GCATTCGTAATTGCACGTTA+GGG - chr4_1:53894220-53894239 None:intergenic 40.0%
TGCATTCGTAATTGCACGTT+AGG - chr4_1:53894221-53894240 None:intergenic 40.0%
TTATGATACTGGGATGTCAG+TGG + chr4_1:53894261-53894280 Msa0555880:intron 40.0%
!! TCAAAACCATTTGGTGGGTT+TGG + chr4_1:53894455-53894474 Msa0555880:five_prime_UTR 40.0%
! TTTTCTCCAAACCCACCAAA+TGG - chr4_1:53894464-53894483 None:intergenic 40.0%
! TTGAAGAAGCATATGACCGA+AGG + chr4_1:53894491-53894510 Msa0555880:five_prime_UTR 40.0%
ACAGTATGTGAATCTAGCTG+GGG - chr4_1:53894950-53894969 None:intergenic 40.0%
GTACAGTATGTGAATCTAGC+TGG - chr4_1:53894952-53894971 None:intergenic 40.0%
CAATGGGATATGGTTGAGTT+TGG + chr4_1:53895369-53895388 Msa0555880:five_prime_UTR 40.0%
ATGGGATATGGTTGAGTTTG+GGG + chr4_1:53895371-53895390 Msa0555880:five_prime_UTR 40.0%
TATGGTTGAGTTTGGGGATA+TGG + chr4_1:53895377-53895396 Msa0555880:five_prime_UTR 40.0%
!! GAAGAAGCATTAGTTCAGCA+AGG + chr4_1:53895399-53895418 Msa0555880:five_prime_UTR 40.0%
CAACCCTTTCTGAATGCATA+GGG + chr4_1:53895510-53895529 Msa0555880:intron 40.0%
AACCCTTTCTGAATGCATAG+GGG + chr4_1:53895511-53895530 Msa0555880:intron 40.0%
AACCCCTATGCATTCAGAAA+GGG - chr4_1:53895516-53895535 None:intergenic 40.0%
AGGCAGAGTCGAGTATTATA+AGG + chr4_1:53896109-53896128 Msa0555880:intron 40.0%
CAGAGTCGAGTATTATAAGG+TGG + chr4_1:53896112-53896131 Msa0555880:intron 40.0%
TATAAAAGGGCCATGGAACA+AGG - chr4_1:53896403-53896422 None:intergenic 40.0%
! TCCATGGCCCTTTTATATGA+AGG + chr4_1:53896406-53896425 Msa0555880:intron 40.0%
TCCTTCATATAAAAGGGCCA+TGG - chr4_1:53896410-53896429 None:intergenic 40.0%
TATAAAAGGGCCATGGAACA+AGG - chr4_1:53896403-53896422 None:intergenic 40.0%
! TCCATGGCCCTTTTATATGA+AGG + chr4_1:53896406-53896425 Msa0555880:intron 40.0%
TCCTTCATATAAAAGGGCCA+TGG - chr4_1:53896410-53896429 None:intergenic 40.0%
GCATTTACAAGTTCTCTCCT+AGG + chr4_1:53896536-53896555 Msa0555880:intron 40.0%
TCAGTGACGTATCAAATGGA+CGG + chr4_1:53896622-53896641 Msa0555880:intron 40.0%
GATAACAGACCTGTCAAAAG+AGG - chr4_1:53896686-53896705 None:intergenic 40.0%
GGGAAATTTAAAGGACTCAG+AGG + chr4_1:53896971-53896990 Msa0555880:intron 40.0%
CAAAAATCTTGATGGAGCCA+TGG + chr4_1:53897277-53897296 Msa0555880:intron 40.0%
CTAATGGGATCGATGTAGAA+GGG - chr4_1:53897390-53897409 None:intergenic 40.0%
TCTAATGGGATCGATGTAGA+AGG - chr4_1:53897391-53897410 None:intergenic 40.0%
! GTTTTATAGAGGAGAAAGGG+GGG - chr4_1:53898206-53898225 None:intergenic 40.0%
GGAGGTTCTACTTTGTAACT+TGG - chr4_1:53898321-53898340 None:intergenic 40.0%
CAACACCAAAAGTCCAAGAA+AGG - chr4_1:53899175-53899194 None:intergenic 40.0%
! TTATGACTTGGCTGTAAGTG+AGG + chr4_1:53899507-53899526 Msa0555880:intron 40.0%
GGCTGTAAGTGAGGTAAATT+TGG + chr4_1:53899516-53899535 Msa0555880:intron 40.0%
!!! CTTCTTGGTTTTGGATTAGG+GGG + chr4_1:53899706-53899725 Msa0555880:intron 40.0%
!!! TTCTTGGTTTTGGATTAGGG+GGG + chr4_1:53899707-53899726 Msa0555880:intron 40.0%
TCATAGACCGTTGATGTTTC+AGG - chr4_1:53899778-53899797 None:intergenic 40.0%
CGAACTTCTTCACTATGGAA+TGG + chr4_1:53899865-53899884 Msa0555880:intron 40.0%
AACGTACAGTAGGTGAATCT+AGG - chr4_1:53900468-53900487 None:intergenic 40.0%
CAAGGCTACAACTCTGATGT+TGG - chr4_1:53890416-53890435 None:intergenic 45.0%
TTAAATGGAGGTCGAACGGT+TGG - chr4_1:53890443-53890462 None:intergenic 45.0%
! ACTTGCAGGTCCGCATTTTT+AGG + chr4_1:53891928-53891947 Msa0555880:intron 45.0%
CCACCATCACATGTAAGGAA+TGG - chr4_1:53892322-53892341 None:intergenic 45.0%
CCATTCCTTACATGTGATGG+TGG + chr4_1:53892319-53892338 Msa0555880:five_prime_UTR 45.0%
!! TTCCTTACATGTGATGGTGG+CGG + chr4_1:53892322-53892341 Msa0555880:five_prime_UTR 45.0%
CTGTGCTTAGTCTCTGATGT+TGG - chr4_1:53892379-53892398 None:intergenic 45.0%
CTAGAAGCAACAGTTCTGCA+AGG + chr4_1:53893049-53893068 Msa0555880:five_prime_UTR 45.0%
CAAATCAAGTCCAAGTCCAC+GGG - chr4_1:53893793-53893812 None:intergenic 45.0%
! ATTCATAGGTTCGGTCGTGT+AGG + chr4_1:53893951-53893970 Msa0555880:intron 45.0%
TTGCCTTATAGCAGCCATGA+AGG + chr4_1:53894605-53894624 Msa0555880:five_prime_UTR 45.0%
GTACCTTCATGGCTGCTATA+AGG - chr4_1:53894611-53894630 None:intergenic 45.0%
CAGTATGTGAATCTAGCTGG+GGG - chr4_1:53894949-53894968 None:intergenic 45.0%
CCTATGCATTCAGAAAGGGT+TGG - chr4_1:53895512-53895531 None:intergenic 45.0%
CCAACCCTTTCTGAATGCAT+AGG + chr4_1:53895509-53895528 Msa0555880:intron 45.0%
CAACCCCTATGCATTCAGAA+AGG - chr4_1:53895517-53895536 None:intergenic 45.0%
GGGTCCTATCACATAGTCAA+AGG - chr4_1:53895878-53895897 None:intergenic 45.0%
GTGGTGTTTACGCTCAGAAT+TGG + chr4_1:53896239-53896258 Msa0555880:intron 45.0%
TGACGTATCAAATGGACGGA+TGG + chr4_1:53896626-53896645 Msa0555880:five_prime_UTR 45.0%
GGCCTAAAGAATCCAAGACT+CGG + chr4_1:53896999-53897018 Msa0555880:intron 45.0%
GTCCGAGTCTTGGATTCTTT+AGG - chr4_1:53897004-53897023 None:intergenic 45.0%
!! AATGGTGGTGGAGAAGGAAA+AGG - chr4_1:53898112-53898131 None:intergenic 45.0%
AAGAGAGAAGGTGGATGCAA+TGG - chr4_1:53898130-53898149 None:intergenic 45.0%
TCGTCAATGGAAGCTTGTGA+TGG - chr4_1:53898296-53898315 None:intergenic 45.0%
TGATGAGAGCCATTACACCT+CGG + chr4_1:53899073-53899092 Msa0555880:intron 45.0%
CAAATTTGGCCGAGGTGTAA+TGG - chr4_1:53899085-53899104 None:intergenic 45.0%
!!! TCTTGGTTTTGGATTAGGGG+GGG + chr4_1:53899708-53899727 Msa0555880:intron 45.0%
GATGGTGCCTGAAACATCAA+CGG + chr4_1:53899768-53899787 Msa0555880:CDS 45.0%
CTAGAAGCAACAGTTCTGCA+AGG + chr4_1:53893049-53893068 Msa0555880:five_prime_UTR 45.0%
!!! TAAAAACAAAATATTTTTTT+TGG - chr4_1:53893354-53893373 None:intergenic 5.0%
!!! TTTAAATAATATTTCTAATT+AGG + chr4_1:53895149-53895168 Msa0555880:intron 5.0%
!!! TTTTAATATTTAATATGTTT+TGG + chr4_1:53892971-53892990 Msa0555880:intron 5.0%
!! ATATAATTTACTTTATAATA+AGG + chr4_1:53895779-53895798 Msa0555880:intron 5.0%
!! TATAATTTACTTTATAATAA+GGG + chr4_1:53895780-53895799 Msa0555880:intron 5.0%
TTTACCATCTCGATCCTCGG+TGG - chr4_1:53890537-53890556 None:intergenic 50.0%
GGAATGGGCCTTGATCAGTA+TGG - chr4_1:53892306-53892325 None:intergenic 50.0%
GGCCCATTCCTTACATGTGA+TGG + chr4_1:53892316-53892335 Msa0555880:intron 50.0%
ATCGCCTTCAACATCAGAGC+AGG + chr4_1:53892406-53892425 Msa0555880:five_prime_UTR 50.0%
TGCATATGCGATTCTTCCCG+TGG + chr4_1:53893774-53893793 Msa0555880:intron 50.0%
AACTCACTAAGTTGCTGCCC+TGG - chr4_1:53894906-53894925 None:intergenic 50.0%
TGAATCTAGCTGGGGGAAGT+GGG - chr4_1:53894942-53894961 None:intergenic 50.0%
CATACGCAGGGTCAAGGAAA+GGG - chr4_1:53895898-53895917 None:intergenic 50.0%
TTTCCTTGACCCTGCGTATG+CGG + chr4_1:53895898-53895917 Msa0555880:intron 50.0%
CTAAAACTCCCGCATACGCA+GGG - chr4_1:53895910-53895929 None:intergenic 50.0%
ACTAAAACTCCCGCATACGC+AGG - chr4_1:53895911-53895930 None:intergenic 50.0%
TTTGTTCCCTGCCAGTCTTG+AGG + chr4_1:53896216-53896235 Msa0555880:intron 50.0%
TTGTTCCCTGCCAGTCTTGA+GGG + chr4_1:53896217-53896236 Msa0555880:intron 50.0%
GTAAACACCACCCTCAAGAC+TGG - chr4_1:53896230-53896249 None:intergenic 50.0%
AAATGGACGGATGGCTACGA+TGG + chr4_1:53896635-53896654 Msa0555880:five_prime_UTR 50.0%
AATGGACGGATGGCTACGAT+GGG + chr4_1:53896636-53896655 Msa0555880:five_prime_UTR 50.0%
! ACGTGTGAGAGAGGCACATA+AGG - chr4_1:53897975-53897994 None:intergenic 50.0%
GGGAACACATGCAGGCAAAT+GGG - chr4_1:53898057-53898076 None:intergenic 50.0%
AGGGAACACATGCAGGCAAA+TGG - chr4_1:53898058-53898077 None:intergenic 50.0%
GGTAAGAAGGGAACACATGC+AGG - chr4_1:53898065-53898084 None:intergenic 50.0%
AGAGAAGGTGGATGCAATGG+TGG - chr4_1:53898127-53898146 None:intergenic 50.0%
CAATGGAAGCTTGTGATGGC+TGG - chr4_1:53898292-53898311 None:intergenic 50.0%
TGGTTGTCTCATCACCCTCA+AGG - chr4_1:53900436-53900455 None:intergenic 50.0%
CAGTAGGTGAATCTAGGCGA+GGG - chr4_1:53900462-53900481 None:intergenic 50.0%
ACAGTAGGTGAATCTAGGCG+AGG - chr4_1:53900463-53900482 None:intergenic 50.0%
AGCCGCCACCATCACATGTA+AGG - chr4_1:53892327-53892346 None:intergenic 55.0%
TGCGATTCTTCCCGTGGACT+TGG + chr4_1:53893780-53893799 Msa0555880:intron 55.0%
GTGAATCTAGCTGGGGGAAG+TGG - chr4_1:53894943-53894962 None:intergenic 55.0%
GCATACGCAGGGTCAAGGAA+AGG - chr4_1:53895899-53895918 None:intergenic 55.0%
TTCCTTGACCCTGCGTATGC+GGG + chr4_1:53895899-53895918 Msa0555880:intron 55.0%
!! TGCGGGAGTTTTAGTGCACC+AGG + chr4_1:53895916-53895935 Msa0555880:intron 55.0%
GATGCTGACACGTGTGAGAG+AGG - chr4_1:53897984-53898003 None:intergenic 55.0%
!! GGATGCAATGGTGGTGGAGA+AGG - chr4_1:53898118-53898137 None:intergenic 55.0%
GAAGGTGGATGCAATGGTGG+TGG - chr4_1:53898124-53898143 None:intergenic 55.0%
GAAAGGGGGGATCATGATGG+TGG - chr4_1:53898193-53898212 None:intergenic 55.0%
GGAGAAAGGGGGGATCATGA+TGG - chr4_1:53898196-53898215 None:intergenic 55.0%
GTGAATCTAGGCGAGGGAAG+TGG - chr4_1:53900456-53900475 None:intergenic 55.0%
GGTCGAACGGTTGGCATGCA+AGG - chr4_1:53890434-53890453 None:intergenic 60.0%
ACAGACATGCAACGCCACCG+AGG + chr4_1:53890520-53890539 Msa0555880:five_prime_UTR 60.0%
AACGCCACCGAGGATCGAGA+TGG + chr4_1:53890530-53890549 Msa0555880:five_prime_UTR 60.0%
TTCCCTGCCAGTCTTGAGGG+TGG + chr4_1:53896220-53896239 Msa0555880:intron 60.0%
CACCACCCTCAAGACTGGCA+GGG - chr4_1:53896225-53896244 None:intergenic 60.0%
ACACCACCCTCAAGACTGGC+AGG - chr4_1:53896226-53896245 None:intergenic 60.0%
CTCCCGCATACGCAGGGTCA+AGG - chr4_1:53895904-53895923 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 53890304 53900913 53890304 ID=Msa0555880;Name=Msa0555880
chr4_1 mRNA 53890304 53900913 53890304 ID=Msa0555880-mRNA-1;Parent=Msa0555880;Name=Msa0555880-mRNA-1;_AED=0.36;_eAED=0.36;_QI=936|1|1|1|0.1|0.09|11|101|55
chr4_1 exon 53890304 53890551 53890304 ID=Msa0555880-mRNA-1:exon:15787;Parent=Msa0555880-mRNA-1
chr4_1 exon 53890761 53890833 53890761 ID=Msa0555880-mRNA-1:exon:15788;Parent=Msa0555880-mRNA-1
chr4_1 exon 53892317 53892427 53892317 ID=Msa0555880-mRNA-1:exon:15789;Parent=Msa0555880-mRNA-1
chr4_1 exon 53893020 53893105 53893020 ID=Msa0555880-mRNA-1:exon:15790;Parent=Msa0555880-mRNA-1
chr4_1 exon 53894434 53894626 53894434 ID=Msa0555880-mRNA-1:exon:15791;Parent=Msa0555880-mRNA-1
chr4_1 exon 53894907 53894967 53894907 ID=Msa0555880-mRNA-1:exon:15792;Parent=Msa0555880-mRNA-1
chr4_1 exon 53895369 53895454 53895369 ID=Msa0555880-mRNA-1:exon:15793;Parent=Msa0555880-mRNA-1
chr4_1 exon 53896626 53896695 53896626 ID=Msa0555880-mRNA-1:exon:15794;Parent=Msa0555880-mRNA-1
chr4_1 exon 53899725 53899856 53899725 ID=Msa0555880-mRNA-1:exon:15795;Parent=Msa0555880-mRNA-1
chr4_1 exon 53900426 53900480 53900426 ID=Msa0555880-mRNA-1:exon:15796;Parent=Msa0555880-mRNA-1
chr4_1 exon 53900824 53900913 53900824 ID=Msa0555880-mRNA-1:exon:15797;Parent=Msa0555880-mRNA-1
chr4_1 five_prime_UTR 53890304 53890551 53890304 ID=Msa0555880-mRNA-1:five_prime_utr;Parent=Msa0555880-mRNA-1
chr4_1 five_prime_UTR 53890761 53890833 53890761 ID=Msa0555880-mRNA-1:five_prime_utr;Parent=Msa0555880-mRNA-1
chr4_1 five_prime_UTR 53892317 53892427 53892317 ID=Msa0555880-mRNA-1:five_prime_utr;Parent=Msa0555880-mRNA-1
chr4_1 five_prime_UTR 53893020 53893105 53893020 ID=Msa0555880-mRNA-1:five_prime_utr;Parent=Msa0555880-mRNA-1
chr4_1 five_prime_UTR 53894434 53894626 53894434 ID=Msa0555880-mRNA-1:five_prime_utr;Parent=Msa0555880-mRNA-1
chr4_1 five_prime_UTR 53894907 53894967 53894907 ID=Msa0555880-mRNA-1:five_prime_utr;Parent=Msa0555880-mRNA-1
chr4_1 five_prime_UTR 53895369 53895454 53895369 ID=Msa0555880-mRNA-1:five_prime_utr;Parent=Msa0555880-mRNA-1
chr4_1 five_prime_UTR 53896626 53896695 53896626 ID=Msa0555880-mRNA-1:five_prime_utr;Parent=Msa0555880-mRNA-1
chr4_1 five_prime_UTR 53899725 53899732 53899725 ID=Msa0555880-mRNA-1:five_prime_utr;Parent=Msa0555880-mRNA-1
chr4_1 CDS 53899733 53899856 53899733 ID=Msa0555880-mRNA-1:cds;Parent=Msa0555880-mRNA-1
chr4_1 CDS 53900426 53900469 53900426 ID=Msa0555880-mRNA-1:cds;Parent=Msa0555880-mRNA-1
chr4_1 three_prime_UTR 53900470 53900480 53900470 ID=Msa0555880-mRNA-1:three_prime_utr;Parent=Msa0555880-mRNA-1
chr4_1 three_prime_UTR 53900824 53900913 53900824 ID=Msa0555880-mRNA-1:three_prime_utr;Parent=Msa0555880-mRNA-1
Gene Sequence

>Msa0555880

ATGAACCTGACATCATTGCAACTTTCAAAGTCATTGATGGTGCCTGAAACATCAACGGTCTATGAAGTTTTTCGTCGAATGGCTGTTTGCAGAGTAGATGCTCAATTTCTAACTGATTCAAATGTTAATATCCTTGAGGGTGATGAGACAACCACTTCCCTCGCCTAG
Protein sequence

>Msa0555880

MNLTSLQLSKSLMVPETSTVYEVFRRMAVCRVDAQFLTDSNVNILEGDETTTSLA*