AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0002450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0002450 MtrunA17_Chr8g0386311 75.676 37 9 0 5 41 44 80 2.07e-11 56.6
Msa0002450 MtrunA17_Chr3g0132111 69.231 39 12 0 3 41 41 79 6.32e-11 55.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 75 sgRNAs with CRISPR-Local

Find 527 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGTTGAGTTTGGGGATA+TGG 0.204068 1_1:-4346907 Msa0002450:five_prime_UTR
CAATGGGATATGGTTGAGTT+TGG 0.233721 1_1:-4346915 Msa0002450:five_prime_UTR
TCATAGACCGTTGATGTTTC+AGG 0.247801 1_1:+4342508 None:intergenic
TAGGAAGAAGAGAAAGAAAA+AGG 0.281810 1_1:+4351957 None:intergenic
TATTGGATGTGGTTGAGTTT+GGG 0.284981 1_1:-4349264 Msa0002450:five_prime_UTR
TATCTGATGTGGTTTAGTTT+GGG 0.288954 1_1:-4341459 Msa0002450:three_prime_UTR
TCAAAACCATTTGGTGGGTT+TGG 0.293130 1_1:-4347829 Msa0002450:five_prime_UTR
GTATCTGATGTGGTTTAGTT+TGG 0.306306 1_1:-4341460 Msa0002450:three_prime_UTR
GTATTGGATGTGGTTGAGTT+TGG 0.319554 1_1:-4349265 Msa0002450:five_prime_UTR
GCAACTTTCAAAGTCATTGA+TGG 0.343752 1_1:-4342533 Msa0002450:CDS
GTGGTGATTGTGTTCTTAAA+TGG 0.344282 1_1:+4351830 None:intergenic
ACATATTGGACTTCAATTCT+TGG 0.348432 1_1:-4347728 Msa0002450:five_prime_UTR
GTACCTTCATGGCTGCTATA+AGG 0.356886 1_1:+4347676 None:intergenic
TGTTTGTTAGCAATGGGATA+TGG 0.369203 1_1:-4346925 Msa0002450:intron
AATGGGATATGGTTGAGTTT+GGG 0.371906 1_1:-4346914 Msa0002450:five_prime_UTR
AATTCATCATCAAAACCATT+TGG 0.420979 1_1:-4347838 Msa0002450:five_prime_UTR
TTGAAAGTTGCAATGATGTC+AGG 0.435539 1_1:+4342545 None:intergenic
AACTAACAGACAGAACATAT+TGG 0.455086 1_1:-4347742 Msa0002450:five_prime_UTR
CACCATCACATGTAAGGAAT+GGG 0.470717 1_1:+4349966 None:intergenic
TTTGCAGTTAATATCCTTGA+GGG 0.481204 1_1:-4341864 Msa0002450:intron
AATACCTGCTCTGATGTTGA+AGG 0.486227 1_1:+4349874 None:intergenic
TATTTCAGTGACGTATCAAA+TGG 0.486620 1_1:-4345666 Msa0002450:intron
CCACCATCACATGTAAGGAA+TGG 0.487274 1_1:+4349965 None:intergenic
CATCATCAAAACCATTTGGT+GGG 0.490956 1_1:-4347834 Msa0002450:five_prime_UTR
AGCCGCCACCATCACATGTA+AGG 0.491245 1_1:+4349960 None:intergenic
CAATTTCTAACTGATTCAAA+TGG 0.497571 1_1:-4342448 Msa0002450:intron
TATTGGACTTCAATTCTTGG+AGG 0.497740 1_1:-4347725 Msa0002450:five_prime_UTR
ATCTGATGTGGTTTAGTTTG+GGG 0.498692 1_1:-4341458 Msa0002450:three_prime_UTR
CATATACGCTATACTACCTT+CGG 0.498868 1_1:+4347777 None:intergenic
CTGTGCTTAGTCTCTGATGT+TGG 0.504230 1_1:+4349908 None:intergenic
ATTGGATGTGGTTGAGTTTG+GGG 0.506776 1_1:-4349263 Msa0002450:five_prime_UTR
GGTCGAACGGTTGGCATGCA+AGG 0.509562 1_1:+4351854 None:intergenic
GTACAGTATGTGAATCTAGC+TGG 0.510612 1_1:+4347335 None:intergenic
CAAGGCTACAACTCTGATGT+TGG 0.514552 1_1:+4351872 None:intergenic
GATAACAGACCTGTCAAAAG+AGG 0.517452 1_1:+4345601 None:intergenic
AAATGGACGGATGGCTACGA+TGG 0.519451 1_1:-4345649 Msa0002450:five_prime_UTR
TCATCATCAAAACCATTTGG+TGG 0.520783 1_1:-4347835 Msa0002450:five_prime_UTR
ATGGGATATGGTTGAGTTTG+GGG 0.521966 1_1:-4346913 Msa0002450:five_prime_UTR
TACAGTATGTGAATCTAGCT+GGG 0.522078 1_1:+4347336 None:intergenic
GGAGGAAATTCACAAAGATA+AGG 0.522244 1_1:-4347707 Msa0002450:five_prime_UTR
TTGTTTGTTAGTATTGGATG+TGG 0.532339 1_1:-4349275 Msa0002450:intron
GTTAAATGAGAATGAATGTA+TGG 0.538944 1_1:+4351931 None:intergenic
GGCCCATTCCTTACATGTGA+TGG 0.543482 1_1:-4349968 Msa0002450:five_prime_UTR
GTGAATCTAGGCGAGGGAAG+TGG 0.550537 1_1:+4341830 None:intergenic
TTAAATGGAGGTCGAACGGT+TGG 0.553776 1_1:+4351845 None:intergenic
AACGTACAGTAGGTGAATCT+AGG 0.553854 1_1:+4341818 None:intergenic
ATCGCCTTCAACATCAGAGC+AGG 0.555332 1_1:-4349878 Msa0002450:intron
TTCTTTGTCAGTATCTGATG+TGG 0.581703 1_1:-4341470 Msa0002450:intron
TTGCCTTATAGCAGCCATGA+AGG 0.584074 1_1:-4347679 Msa0002450:intron
GTTCTTAAATGGAGGTCGAA+CGG 0.594236 1_1:+4351841 None:intergenic
CCATTCCTTACATGTGATGG+TGG 0.603991 1_1:-4349965 Msa0002450:five_prime_UTR
TGGTTGTCTCATCACCCTCA+AGG 0.606403 1_1:+4341850 None:intergenic
TGACGTATCAAATGGACGGA+TGG 0.606896 1_1:-4345658 Msa0002450:five_prime_UTR
TTCCTTACATGTGATGGTGG+CGG 0.615743 1_1:-4349962 Msa0002450:five_prime_UTR
CAGTAGGTGAATCTAGGCGA+GGG 0.620624 1_1:+4341824 None:intergenic
GAGAATGAATGTATGGCTGT+AGG 0.622146 1_1:+4351938 None:intergenic
GTGATTGTGTTCTTAAATGG+AGG 0.624650 1_1:+4351833 None:intergenic
TTTACCATCTCGATCCTCGG+TGG 0.626398 1_1:+4351751 None:intergenic
AATGGACGGATGGCTACGAT+GGG 0.631048 1_1:-4345648 Msa0002450:five_prime_UTR
CTAGAAGCAACAGTTCTGCA+AGG 0.631238 1_1:-4341430 Msa0002450:three_prime_UTR
CTAGAAGCAACAGTTCTGCA+AGG 0.631238 1_1:-4349235 Msa0002450:five_prime_UTR
TCTACAAAACTCACATGCAG+AGG 0.631811 1_1:+4351460 None:intergenic
GAAGAAGCATTAGTTCAGCA+AGG 0.633978 1_1:-4346885 Msa0002450:five_prime_UTR
TTGAAGAAGCATATGACCGA+AGG 0.637274 1_1:-4347793 Msa0002450:five_prime_UTR
TCTATATGAGAGAAGAACAA+TGG 0.637744 1_1:+4351808 None:intergenic
TCAGTGACGTATCAAATGGA+CGG 0.638041 1_1:-4345662 Msa0002450:intron
GTTAGACATGATGAAAACAA+AGG 0.640821 1_1:-4341399 Msa0002450:three_prime_UTR
GTTAGACATGATGAAAACAA+AGG 0.640821 1_1:-4349204 Msa0002450:five_prime_UTR
ACAGTAGGTGAATCTAGGCG+AGG 0.644049 1_1:+4341823 None:intergenic
GATGGTGCCTGAAACATCAA+CGG 0.665675 1_1:-4342515 Msa0002450:CDS
ACAGTATGTGAATCTAGCTG+GGG 0.667908 1_1:+4347337 None:intergenic
AACGCCACCGAGGATCGAGA+TGG 0.668682 1_1:-4351755 Msa0002450:intron
CAGTATGTGAATCTAGCTGG+GGG 0.695680 1_1:+4347338 None:intergenic
ATATGAGAGAAGAACAATGG+TGG 0.698548 1_1:+4351811 None:intergenic
ACAGACATGCAACGCCACCG+AGG 0.718809 1_1:-4351765 Msa0002450:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAATATTTTTTATAAAT+AGG - chr1_1:4348882-4348901 Msa0002450:intron 0.0%
!!! TAAAAATATTATTTAAAATT+TGG + chr1_1:4351748-4351767 None:intergenic 0.0%
!!! TTTAAATAATATTTTTAATT+AGG - chr1_1:4351751-4351770 Msa0002450:intron 0.0%
!! ATGAAAAATACATATAAATA+TGG + chr1_1:4342161-4342180 None:intergenic 10.0%
!!! TTTTTTTTAATTTTTATTCC+TGG - chr1_1:4342496-4342515 Msa0002450:CDS 10.0%
!! AGAAGAAAATTAAAAATATA+TGG - chr1_1:4342945-4342964 Msa0002450:intron 10.0%
!! ATTAAATTAGTAATTGTATT+CGG + chr1_1:4343168-4343187 None:intergenic 10.0%
!!! AATTTAACAACATTATTTTA+AGG - chr1_1:4343610-4343629 Msa0002450:intron 10.0%
!! AAGAATAAACTTAATTAAAA+TGG + chr1_1:4346074-4346093 None:intergenic 10.0%
!!! TAGAAATATTATTTAAAATC+AGG + chr1_1:4346235-4346254 None:intergenic 10.0%
!! AAACACATAATTTAAAAAAA+GGG + chr1_1:4347034-4347053 None:intergenic 10.0%
!!! TAAAAACAATAGTTTTTATT+TGG - chr1_1:4347141-4347160 Msa0002450:intron 10.0%
!! AAAATAAATTAATCGATAAT+AGG - chr1_1:4348263-4348282 Msa0002450:intron 10.0%
!!! ACAAAATTTTCAATAAAATA+AGG - chr1_1:4348938-4348957 Msa0002450:intron 10.0%
!!! CAAATTTAGAATTAAAAAAA+TGG + chr1_1:4349730-4349749 None:intergenic 10.0%
!! ATAAACAAAATATAAACTAA+TGG + chr1_1:4349778-4349797 None:intergenic 10.0%
!!! TGTTATTATTATTATTTTCT+TGG - chr1_1:4349839-4349858 Msa0002450:intron 10.0%
!!! GTTATTATTATTATTTTCTT+GGG - chr1_1:4349840-4349859 Msa0002450:intron 10.0%
!! GTTAATATAATTTAACAAAA+AGG + chr1_1:4350498-4350517 None:intergenic 10.0%
!!! GTTTATCATTTTTTTTTTAT+TGG - chr1_1:4350631-4350650 Msa0002450:intron 10.0%
!!! ACAATTTTTTTATCTGTATT+TGG - chr1_1:4341683-4341702 Msa0002450:intron 15.0%
!! TTGATCTATGAAATTTAAAT+TGG - chr1_1:4341976-4341995 Msa0002450:intron 15.0%
!! TTCATAAATTTGTATTAATG+TGG - chr1_1:4342118-4342137 Msa0002450:intron 15.0%
!!! AATACTAACATTTTTAGTAA+AGG + chr1_1:4342271-4342290 None:intergenic 15.0%
!!! ATACTTAATTTGTTGTTTTA+TGG - chr1_1:4342621-4342640 Msa0002450:intron 15.0%
!! GGTTATATTTATTACTAATA+GGG + chr1_1:4343147-4343166 None:intergenic 15.0%
!!! TAAAAACATCACATTTTAAA+TGG + chr1_1:4343564-4343583 None:intergenic 15.0%
!! ATTGAAATTATGTTTCAAAT+TGG - chr1_1:4343774-4343793 Msa0002450:intron 15.0%
!! TCATTAAGATATTATAACAA+GGG - chr1_1:4344483-4344502 Msa0002450:intron 15.0%
!!! CTTTTTAACTTATCATTTAA+TGG + chr1_1:4344555-4344574 None:intergenic 15.0%
!!! TAAAAAATCTTGTCAATTTT+AGG + chr1_1:4345080-4345099 None:intergenic 15.0%
!!! TTAGATTGTTTTTAATCTTT+TGG - chr1_1:4345733-4345752 Msa0002450:intron 15.0%
!!! ATATGAATCAATTTGTTTTT+AGG + chr1_1:4345763-4345782 None:intergenic 15.0%
!! ATAAACTTAATTAAAATGGA+CGG + chr1_1:4346070-4346089 None:intergenic 15.0%
!!! AAAACGTAATATTGTTTTAT+TGG + chr1_1:4346783-4346802 None:intergenic 15.0%
!! GAAACACATAATTTAAAAAA+AGG + chr1_1:4347035-4347054 None:intergenic 15.0%
!! TTCTTTATAATAAGTATCAT+TGG - chr1_1:4347378-4347397 Msa0002450:five_prime_UTR 15.0%
!! ATTAATAGATATAAATGAGA+GGG + chr1_1:4348144-4348163 None:intergenic 15.0%
!! ATTAATAGTTATACCAATTT+AGG + chr1_1:4348200-4348219 None:intergenic 15.0%
!! GTGATAAATAGTTAAAAAAA+TGG + chr1_1:4348236-4348255 None:intergenic 15.0%
!!! TGAAAATAATTTGTAGTAAA+TGG + chr1_1:4348678-4348697 None:intergenic 15.0%
!!! TTTACTACAAATTATTTTCA+AGG - chr1_1:4348678-4348697 Msa0002450:intron 15.0%
!! AATTATTATGAGTAAAAATG+TGG + chr1_1:4348964-4348983 None:intergenic 15.0%
!!! CAGTTAATATTTTTATTTGT+GGG + chr1_1:4349451-4349470 None:intergenic 15.0%
!!! ATTAATCACAATTTTTTTTC+TGG - chr1_1:4349669-4349688 Msa0002450:intron 15.0%
!! ATTATTATTTCCATTTGAAT+CGG + chr1_1:4350090-4350109 None:intergenic 15.0%
!!! GTTTTAATTCTTATCAAATT+TGG + chr1_1:4350188-4350207 None:intergenic 15.0%
!! TGATAAGAATTAAAACTTTA+AGG - chr1_1:4350192-4350211 Msa0002450:intron 15.0%
!!! TATCATTTTTTTTTTATTGG+TGG - chr1_1:4350634-4350653 Msa0002450:intron 15.0%
!! TTTGTTTGTTTATTTGATAT+TGG + chr1_1:4351199-4351218 None:intergenic 15.0%
!!! TTTTTTTATCTGTATTTGGA+TGG - chr1_1:4341687-4341706 Msa0002450:intron 20.0%
!!! TTTTTTATCTGTATTTGGAT+GGG - chr1_1:4341688-4341707 Msa0002450:intron 20.0%
!!! GTTTATATATTTTCGAGTTA+GGG - chr1_1:4341747-4341766 Msa0002450:intron 20.0%
!!! AATGTCTCAATTTTTAGTAA+AGG - chr1_1:4342088-4342107 Msa0002450:intron 20.0%
!! TAAATTTGTATTAATGTGGT+TGG - chr1_1:4342122-4342141 Msa0002450:intron 20.0%
!!! TATTTTCATTTGTATCTCTT+TGG - chr1_1:4342558-4342577 Msa0002450:exon 20.0%
!!! TTTTATGGACTAATAGAAAA+AGG - chr1_1:4342636-4342655 Msa0002450:intron 20.0%
!!! TTTATGGACTAATAGAAAAA+GGG - chr1_1:4342637-4342656 Msa0002450:intron 20.0%
!! AATATAGAGCTACATATATA+TGG - chr1_1:4342712-4342731 Msa0002450:intron 20.0%
!!! CATTAATTTGATTTTTGAAG+TGG + chr1_1:4342779-4342798 None:intergenic 20.0%
!!! CTGCTATTTCATATTATTAT+TGG + chr1_1:4343048-4343067 None:intergenic 20.0%
!! CGGTTATATTTATTACTAAT+AGG + chr1_1:4343148-4343167 None:intergenic 20.0%
!! TTTGTTCACAAAATTGAATT+TGG - chr1_1:4343230-4343249 Msa0002450:intron 20.0%
!!! ACATAATTTCAATTTTCATC+AGG + chr1_1:4343767-4343786 None:intergenic 20.0%
!! GAATAGTATTATTCATCATT+TGG - chr1_1:4343834-4343853 Msa0002450:intron 20.0%
!! TAACATTTACAAATGATGTT+GGG + chr1_1:4343865-4343884 None:intergenic 20.0%
!! ATTTGTAAATGTTACATGTT+GGG - chr1_1:4343871-4343890 Msa0002450:intron 20.0%
!!! ACATTTTAGAAGTATATACA+TGG + chr1_1:4343902-4343921 None:intergenic 20.0%
!! ATAGTTTATTCTATGACAAT+TGG + chr1_1:4343947-4343966 None:intergenic 20.0%
!! AGATACAATAAAACAGTAAA+AGG + chr1_1:4344013-4344032 None:intergenic 20.0%
!! TTATCTAATAAGAGAAAAAG+AGG + chr1_1:4344223-4344242 None:intergenic 20.0%
!!! TTTCTCAATTCTTTTAGAAA+GGG + chr1_1:4344256-4344275 None:intergenic 20.0%
!! AATATGTTTAAAGAATGCAT+AGG - chr1_1:4344299-4344318 Msa0002450:intron 20.0%
!! ATATGTTTAAAGAATGCATA+GGG - chr1_1:4344300-4344319 Msa0002450:intron 20.0%
!! TATGGAAAAAAGACTTTATT+AGG + chr1_1:4344335-4344354 None:intergenic 20.0%
!!! CTTGTTATAATATCTTAATG+AGG + chr1_1:4344484-4344503 None:intergenic 20.0%
!! CTCATTAAGATATTATAACA+AGG - chr1_1:4344482-4344501 Msa0002450:intron 20.0%
!!! AGTTTTAAACCTAATTTCTT+GGG - chr1_1:4344706-4344725 Msa0002450:intron 20.0%
!!! AAAGATATGCATAAGTTTTA+GGG + chr1_1:4345119-4345138 None:intergenic 20.0%
!!! TGCATAAGTATTTTTTGTTA+TGG + chr1_1:4345142-4345161 None:intergenic 20.0%
!! AATACTTATGCATATCTTAT+TGG - chr1_1:4345150-4345169 Msa0002450:intron 20.0%
!! TTATAAATCAAAGTAGAAGA+TGG + chr1_1:4345245-4345264 None:intergenic 20.0%
!! TAAAAATAATAGTACCTTCA+TGG + chr1_1:4345711-4345730 None:intergenic 20.0%
!! AAAACAGTATTCACTAAATA+AGG + chr1_1:4346356-4346375 None:intergenic 20.0%
!! AATATATTGAAAGAATGCAT+AGG - chr1_1:4346637-4346656 Msa0002450:intron 20.0%
!! ATATATTGAAAGAATGCATA+GGG - chr1_1:4346638-4346657 Msa0002450:intron 20.0%
!! TAAGTTATAACATCTCAATA+AGG + chr1_1:4346826-4346845 None:intergenic 20.0%
!!! ATACACTTTTAAGTGATAAT+GGG - chr1_1:4347062-4347081 Msa0002450:intron 20.0%
!! ATATCTTATACTATTCGAAA+AGG + chr1_1:4347426-4347445 None:intergenic 20.0%
!! AAACTATCCTTCATATAAAA+GGG + chr1_1:4347505-4347524 None:intergenic 20.0%
!! AAAACTATCCTTCATATAAA+AGG + chr1_1:4347506-4347525 None:intergenic 20.0%
!! AAACTATCCTTCATATAAAA+GGG + chr1_1:4347505-4347524 None:intergenic 20.0%
!! AAAACTATCCTTCATATAAA+AGG + chr1_1:4347506-4347525 None:intergenic 20.0%
!! AAACAAGTCTATATACAATA+AGG + chr1_1:4348040-4348059 None:intergenic 20.0%
!!! TTATTGTATATAGACTTGTT+TGG - chr1_1:4348039-4348058 Msa0002450:intron 20.0%
!!! TATTGTATATAGACTTGTTT+GGG - chr1_1:4348040-4348059 Msa0002450:intron 20.0%
!! GATTAATAGATATAAATGAG+AGG + chr1_1:4348145-4348164 None:intergenic 20.0%
!!! TTTTTTGATATCTCAAAGAT+TGG + chr1_1:4348328-4348347 None:intergenic 20.0%
!!! GAATATTTTAAAATTGTCCA+TGG + chr1_1:4348386-4348405 None:intergenic 20.0%
!!! ATTTATGTTGCTATTTGAAA+AGG - chr1_1:4348711-4348730 Msa0002450:intron 20.0%
!!! TTATCCTTGTGTATTTTTTT+AGG - chr1_1:4348989-4349008 Msa0002450:intron 20.0%
!!! TATCCTTGTGTATTTTTTTA+GGG - chr1_1:4348990-4349009 Msa0002450:intron 20.0%
!! AAAAAAGAAAGAAAAGAGAA+GGG + chr1_1:4349175-4349194 None:intergenic 20.0%
!! AAAAAAAGAAAGAAAAGAGA+AGG + chr1_1:4349176-4349195 None:intergenic 20.0%
!!! TAAAGATAAGAGTTTTATAG+AGG + chr1_1:4349306-4349325 None:intergenic 20.0%
!!! CCAGTTAATATTTTTATTTG+TGG + chr1_1:4349452-4349471 None:intergenic 20.0%
!! CCACAAATAAAAATATTAAC+TGG - chr1_1:4349449-4349468 Msa0002450:intron 20.0%
!! AATGTACATATAAAAGAAGA+TGG + chr1_1:4349631-4349650 None:intergenic 20.0%
!!! ATATTTGTGATTTAGCATTT+TGG - chr1_1:4349888-4349907 Msa0002450:five_prime_UTR 20.0%
!! AAAACAAAATTAACACTCAA+AGG + chr1_1:4350017-4350036 None:intergenic 20.0%
!! TTATTATTTCCATTTGAATC+GGG + chr1_1:4350089-4350108 None:intergenic 20.0%
!! ACATAATAATCAAATGCATA+AGG + chr1_1:4350223-4350242 None:intergenic 20.0%
!! TTATGCATTTGATTATTATG+TGG - chr1_1:4350222-4350241 Msa0002450:intron 20.0%
!!! CATTTTTGGATATAATTTAC+TGG - chr1_1:4350366-4350385 Msa0002450:intron 20.0%
!! GTTAAATTATATTAACACCT+TGG - chr1_1:4350502-4350521 Msa0002450:intron 20.0%
!! TGGATTACTTAATTATGATT+TGG - chr1_1:4350975-4350994 Msa0002450:intron 20.0%
!! TTTAGTTATTTGTCAACAAA+GGG + chr1_1:4351234-4351253 None:intergenic 20.0%
!! AGATACAATAAAACAGTAAA+AGG + chr1_1:4344013-4344032 None:intergenic 20.0%
! GTTAAATGAGAATGAATGTA+TGG + chr1_1:4341445-4341464 None:intergenic 25.0%
! ACTCGAAAATATATAAACGT+TGG + chr1_1:4341745-4341764 None:intergenic 25.0%
!!! CGTTTATATATTTTCGAGTT+AGG - chr1_1:4341746-4341765 Msa0002450:intron 25.0%
!! TTTTGAACATCTATGTATCT+TGG - chr1_1:4341946-4341965 Msa0002450:intron 25.0%
! AATCTTAAGTGTATGCTAAA+TGG - chr1_1:4342010-4342029 Msa0002450:intron 25.0%
! ATCTTAAGTGTATGCTAAAT+GGG - chr1_1:4342011-4342030 Msa0002450:intron 25.0%
! TACTAAAAATTGAGACATTG+AGG + chr1_1:4342087-4342106 None:intergenic 25.0%
! ATTAGATCAGTAAATTGACA+AGG + chr1_1:4342305-4342324 None:intergenic 25.0%
!!! GAATTATTTTATAGCAGTAG+CGG + chr1_1:4342348-4342367 None:intergenic 25.0%
! TATCACGATAAAGTATGAAA+TGG + chr1_1:4342410-4342429 None:intergenic 25.0%
! ATTTGACAGAAAAATAAAGC+AGG - chr1_1:4342681-4342700 Msa0002450:intron 25.0%
!! ATGTAGCTCTATATTTAACA+TGG + chr1_1:4342707-4342726 None:intergenic 25.0%
! ATATGGAAATAATTCTGTCA+TGG - chr1_1:4342729-4342748 Msa0002450:intron 25.0%
!! TCTACATCATTTGTATTGAT+TGG + chr1_1:4342928-4342947 None:intergenic 25.0%
!!! TTAAAGCGAGTTGATTTAAA+TGG + chr1_1:4343117-4343136 None:intergenic 25.0%
! ATTTAATGACCTAACATTAG+TGG - chr1_1:4343181-4343200 Msa0002450:intron 25.0%
!!! TATGTGAAGTTATTTTACGA+TGG - chr1_1:4343646-4343665 Msa0002450:intron 25.0%
! AACAATGAGGTCTTAAAAAT+AGG + chr1_1:4343676-4343695 None:intergenic 25.0%
! AATAAAAGTGATGAACAATG+AGG + chr1_1:4343689-4343708 None:intergenic 25.0%
!!! ACTTTTATTTGCTACATGTT+GGG - chr1_1:4343700-4343719 Msa0002450:intron 25.0%
!!! ACATTTTAGAAGTATAGACT+TGG + chr1_1:4343731-4343750 None:intergenic 25.0%
! TATTCGTATCTAGATTTCAT+CGG + chr1_1:4343819-4343838 None:intergenic 25.0%
! GTAACATTTACAAATGATGT+TGG + chr1_1:4343866-4343885 None:intergenic 25.0%
! CATTTGTAAATGTTACATGT+TGG - chr1_1:4343870-4343889 Msa0002450:intron 25.0%
!! GATTGTTTGTTTGTTAGTAT+TGG - chr1_1:4344092-4344111 Msa0002450:intron 25.0%
!!! AAAGAGGTATTAGATAGAAA+AGG + chr1_1:4344207-4344226 None:intergenic 25.0%
!!! CTTTCTCAATTCTTTTAGAA+AGG + chr1_1:4344257-4344276 None:intergenic 25.0%
!!! CTTCGAAATTTTAAAAAGCT+AGG - chr1_1:4344369-4344388 Msa0002450:intron 25.0%
! GTTATAATATCTTAATGAGG+AGG + chr1_1:4344481-4344500 None:intergenic 25.0%
!!! GCAATTGTTGTTTTTAGTTT+TGG - chr1_1:4344581-4344600 Msa0002450:intron 25.0%
! AATAAATTCTAATGCAAAGC+TGG + chr1_1:4344629-4344648 None:intergenic 25.0%
!! CAAGAAATTAGGTTTAAAAC+TGG + chr1_1:4344707-4344726 None:intergenic 25.0%
!!! CAGTTTTAAACCTAATTTCT+TGG - chr1_1:4344705-4344724 Msa0002450:intron 25.0%
! AAATTCAAACCCAAGAAATT+AGG + chr1_1:4344718-4344737 None:intergenic 25.0%
!! TTCTGCTATACATCATTTTA+TGG + chr1_1:4344769-4344788 None:intergenic 25.0%
! ATAAAGAGGTTAATCTGTAT+TGG - chr1_1:4344788-4344807 Msa0002450:intron 25.0%
! ATATTTCATCAGTTGTATTC+TGG + chr1_1:4344965-4344984 None:intergenic 25.0%
! AACTGATGAAATATGATACT+TGG - chr1_1:4344971-4344990 Msa0002450:intron 25.0%
!! GAAAGATATGCATAAGTTTT+AGG + chr1_1:4345120-4345139 None:intergenic 25.0%
! AAGCAAGATATACAAGAAAT+AGG + chr1_1:4345286-4345305 None:intergenic 25.0%
!!! ATAACTTTCAAGTATTGATC+TGG - chr1_1:4345400-4345419 Msa0002450:intron 25.0%
! AATACTTCAAAGAGTTCTTT+AGG + chr1_1:4345438-4345457 None:intergenic 25.0%
! AATTCATCATCAAAACCATT+TGG - chr1_1:4345535-4345554 Msa0002450:intron 25.0%
! TTGAGAGTTTCTTCTAAATT+AGG - chr1_1:4345889-4345908 Msa0002450:intron 25.0%
!! GGAACTTTTTATATTAGTGT+TGG + chr1_1:4346214-4346233 None:intergenic 25.0%
! TCTTATGACAATTTGCATAA+GGG + chr1_1:4346282-4346301 None:intergenic 25.0%
! ATCTTATGACAATTTGCATA+AGG + chr1_1:4346283-4346302 None:intergenic 25.0%
!!! TTTTCTTTGTTTGTTAGCAA+TGG - chr1_1:4346441-4346460 Msa0002450:intron 25.0%
!! TTTCTTTGTTTGTTAGCAAT+GGG - chr1_1:4346442-4346461 Msa0002450:intron 25.0%
! TATATTGAAAGAATGCATAG+GGG - chr1_1:4346639-4346658 Msa0002450:intron 25.0%
! AAAAAGACTTCAATAGGAAA+CGG + chr1_1:4346670-4346689 None:intergenic 25.0%
! TATGTTGTATAGTAAGTATG+TGG + chr1_1:4346693-4346712 None:intergenic 25.0%
!!! CATACACTTTTAAGTGATAA+TGG - chr1_1:4347061-4347080 Msa0002450:intron 25.0%
!!! ACGAAATAAACATGTTTTGA+AGG - chr1_1:4347178-4347197 Msa0002450:intron 25.0%
! ATCTACATATAGCATAGTAA+TGG - chr1_1:4347250-4347269 Msa0002450:intron 25.0%
!! TGATCTTTGTATTTAGTTCA+AGG - chr1_1:4347351-4347370 Msa0002450:five_prime_UTR 25.0%
! TCACCAAATTTATCAAGATT+TGG - chr1_1:4347452-4347471 Msa0002450:intron 25.0%
! CACCAAATTTATCAAGATTT+GGG - chr1_1:4347453-4347472 Msa0002450:intron 25.0%
! TACCCAAATCTTGATAAATT+TGG + chr1_1:4347458-4347477 None:intergenic 25.0%
! CCAAGAAGAATAGATAATAA+CGG + chr1_1:4347601-4347620 None:intergenic 25.0%
! CGTTATTATCTATTCTTCTT+GGG - chr1_1:4347599-4347618 Msa0002450:intron 25.0%
! GTTATTATCTATTCTTCTTG+GGG - chr1_1:4347600-4347619 Msa0002450:intron 25.0%
! TGAAATATCACATCAAATTC+TGG + chr1_1:4347694-4347713 None:intergenic 25.0%
! GGTCAAACATATGATTTATT+AGG + chr1_1:4347807-4347826 None:intergenic 25.0%
!!! CTCTAAGTTTGCTATATATA+TGG + chr1_1:4347828-4347847 None:intergenic 25.0%
!!! AATTGCCATTTATCGTATTT+TGG + chr1_1:4347888-4347907 None:intergenic 25.0%
! TCTATATACAATAAGGAGAA+TGG + chr1_1:4348033-4348052 None:intergenic 25.0%
! TGATACTTCAAAAATCTTGA+TGG - chr1_1:4348358-4348377 Msa0002450:intron 25.0%
! TGAGTGCATATAAATCTAAT+GGG + chr1_1:4348494-4348513 None:intergenic 25.0%
! TTGAGTGCATATAAATCTAA+TGG + chr1_1:4348495-4348514 None:intergenic 25.0%
! CTACTTAGAAATAACTGTAT+TGG + chr1_1:4348758-4348777 None:intergenic 25.0%
!!! ATCCTTGTGTATTTTTTTAG+GGG - chr1_1:4348991-4349010 Msa0002450:intron 25.0%
! AATGACATAAAGATAAGCAT+TGG + chr1_1:4349097-4349116 None:intergenic 25.0%
! TCCATAGTGTTAATATTATG+TGG - chr1_1:4349118-4349137 Msa0002450:intron 25.0%
! ACCACATAATATTAACACTA+TGG + chr1_1:4349122-4349141 None:intergenic 25.0%
!!! GGTTTTATTTTAGTATGAAG+CGG + chr1_1:4349261-4349280 None:intergenic 25.0%
!!! ATTTTTTAGACTGTCATTTC+TGG - chr1_1:4349347-4349366 Msa0002450:intron 25.0%
!! TTTTATTGTGAATATCAAGG+AGG + chr1_1:4349428-4349447 None:intergenic 25.0%
!!! GTTCTTTTTCACTATTTTTG+AGG - chr1_1:4349520-4349539 Msa0002450:intron 25.0%
!!! CTATATTTTTACAAGAAACG+AGG + chr1_1:4349599-4349618 None:intergenic 25.0%
! ATGCTAAATCACAAATATAG+AGG + chr1_1:4349886-4349905 None:intergenic 25.0%
! TTCTAATGACATGTTAATGA+AGG - chr1_1:4349979-4349998 Msa0002450:intron 25.0%
! AAGATGATAATCTGATCTAA+AGG - chr1_1:4350113-4350132 Msa0002450:intron 25.0%
!! GTAAATCAACGATTTTTGAA+TGG - chr1_1:4350283-4350302 Msa0002450:intron 25.0%
!! GTTTAGAAAAGTTGCATTTT+TGG - chr1_1:4350352-4350371 Msa0002450:intron 25.0%
!!! TTTTTTATGCAATAAGTCCA+AGG + chr1_1:4350522-4350541 None:intergenic 25.0%
! TTCAAACATACTTTATGACT+TGG - chr1_1:4350584-4350603 Msa0002450:intron 25.0%
!! AAAATGTTAATAGAAAGTGC+AGG + chr1_1:4350750-4350769 None:intergenic 25.0%
!! CAATTTCTAACTGATTCAAA+TGG - chr1_1:4350925-4350944 Msa0002450:intron 25.0%
! CTTTAGTTATTTGTCAACAA+AGG + chr1_1:4351235-4351254 None:intergenic 25.0%
! GCGAAGAAACATAATTAAAA+TGG + chr1_1:4351590-4351609 None:intergenic 25.0%
!! ATGACAATTTTTGTATCATC+TGG - chr1_1:4351701-4351720 Msa0002450:intron 25.0%
!! AAAGAAAAAGGTATCCGAAA+AGG + chr1_1:4341407-4341426 None:intergenic 30.0%
TAGGAAGAAGAGAAAGAAAA+AGG + chr1_1:4341419-4341438 None:intergenic 30.0%
TCTATATGAGAGAAGAACAA+TGG + chr1_1:4341568-4341587 None:intergenic 30.0%
GTTGATGTTTCTTCAAAAGA+CGG - chr1_1:4341830-4341849 Msa0002450:exon 30.0%
TAAAAATTGAGACATTGAGG+TGG + chr1_1:4342084-4342103 None:intergenic 30.0%
TAATGTGGTTGGATATGTAT+TGG - chr1_1:4342133-4342152 Msa0002450:intron 30.0%
! GTAAATTGACAAGGTTAGTT+AGG + chr1_1:4342296-4342315 None:intergenic 30.0%
GATATCAAACATAATACTCC+AGG + chr1_1:4342453-4342472 None:intergenic 30.0%
!!! TAGTTTTGACAAAATACTCC+AGG + chr1_1:4342517-4342536 None:intergenic 30.0%
ACAAATTGACTGTGTCAAAT+TGG - chr1_1:4342862-4342881 Msa0002450:intron 30.0%
ATTGGTCGAGAATAAGATTA+TGG - chr1_1:4342880-4342899 Msa0002450:intron 30.0%
TTGGTCGAGAATAAGATTAT+GGG - chr1_1:4342881-4342900 Msa0002450:intron 30.0%
GGCAAATAGTAACATATCAA+AGG - chr1_1:4342902-4342921 Msa0002450:intron 30.0%
ATTGGTATTGCCTAAAAATG+CGG + chr1_1:4343030-4343049 None:intergenic 30.0%
ATAGATTGCAATTTGCAAGT+CGG + chr1_1:4343073-4343092 None:intergenic 30.0%
!! GTTCACAATCAACTGATTTT+GGG + chr1_1:4343300-4343319 None:intergenic 30.0%
!! TGTTCACAATCAACTGATTT+TGG + chr1_1:4343301-4343320 None:intergenic 30.0%
GTTGATTGTGAACATGAATA+TGG - chr1_1:4343307-4343326 Msa0002450:intron 30.0%
TTTCAATTCCATACTGATCA+AGG - chr1_1:4343384-4343403 Msa0002450:intron 30.0%
TAAATTGATAGAGACTGTCA+TGG + chr1_1:4343596-4343615 None:intergenic 30.0%
!! CACTTTTATTTGCTACATGT+TGG - chr1_1:4343699-4343718 Msa0002450:intron 30.0%
TTCTATGACAATTGGCATAA+GGG + chr1_1:4343939-4343958 None:intergenic 30.0%
ATTCTATGACAATTGGCATA+AGG + chr1_1:4343940-4343959 None:intergenic 30.0%
CTACTCATCAAGCTTAATAA+AGG + chr1_1:4343970-4343989 None:intergenic 30.0%
! TTGTTTGTTAGTATTGGATG+TGG - chr1_1:4344098-4344117 Msa0002450:intron 30.0%
GTTAGACATGATGAAAACAA+AGG - chr1_1:4344169-4344188 Msa0002450:intron 30.0%
!! TCAATTCTTTTAGAAAGGGT+TGG + chr1_1:4344252-4344271 None:intergenic 30.0%
GAAGTTGTATAGCAAGTATA+TGG + chr1_1:4344353-4344372 None:intergenic 30.0%
TGATGTATAGCAGAATAAAG+AGG - chr1_1:4344774-4344793 Msa0002450:intron 30.0%
GTTAATCTGTATTGGATAGT+TGG - chr1_1:4344796-4344815 Msa0002450:intron 30.0%
AGTTACATTTGAGCATTCAT+AGG - chr1_1:4345026-4345045 Msa0002450:intron 30.0%
AACTAACAGACAGAACATAT+TGG - chr1_1:4345631-4345650 Msa0002450:five_prime_UTR 30.0%
ACATATTGGACTTCAATTCT+TGG - chr1_1:4345645-4345664 Msa0002450:five_prime_UTR 30.0%
!!! GGTTTCAATTTTTAGTGAGT+TGG + chr1_1:4345796-4345815 None:intergenic 30.0%
!!! CTTGGTTGTTTTTTCACTAT+TGG + chr1_1:4345817-4345836 None:intergenic 30.0%
TGTAAGCAATATAGACTACT+TGG + chr1_1:4345835-4345854 None:intergenic 30.0%
CACATCTATTAGAAATGCTT+AGG + chr1_1:4346127-4346146 None:intergenic 30.0%
AGCATTTCTAATAGATGTGA+TGG - chr1_1:4346128-4346147 Msa0002450:intron 30.0%
GCATTTCTAATAGATGTGAT+GGG - chr1_1:4346129-4346148 Msa0002450:intron 30.0%
! TTGACAACTTTTGTATCTTC+TGG - chr1_1:4346188-4346207 Msa0002450:intron 30.0%
TTGTCTAACAACAGAAAAAG+AGG + chr1_1:4346572-4346591 None:intergenic 30.0%
ATGTGGAAAAAGACTTCAAT+AGG + chr1_1:4346676-4346695 None:intergenic 30.0%
GTTATAACATCTCAATAAGG+AGG + chr1_1:4346823-4346842 None:intergenic 30.0%
TTTACCTTTGACTATGTGAT+AGG - chr1_1:4346960-4346979 Msa0002450:intron 30.0%
AATTTAAAAAAAGGGCAACC+TGG + chr1_1:4347026-4347045 None:intergenic 30.0%
! CACTTAAAAGTGTATGAGAA+AGG + chr1_1:4347057-4347076 None:intergenic 30.0%
TACAGCATCAACATTGTATT+TGG - chr1_1:4347092-4347111 Msa0002450:intron 30.0%
ACAGCATCAACATTGTATTT+GGG - chr1_1:4347093-4347112 Msa0002450:intron 30.0%
ACATATAGCATAGTAATGGT+AGG - chr1_1:4347254-4347273 Msa0002450:intron 30.0%
CCGTTATTATCTATTCTTCT+TGG - chr1_1:4347598-4347617 Msa0002450:intron 30.0%
GACTAATTATCAAGTAACCT+AGG + chr1_1:4347645-4347664 None:intergenic 30.0%
TATTTCAGTGACGTATCAAA+TGG - chr1_1:4347707-4347726 Msa0002450:five_prime_UTR 30.0%
AGTAGCCAAAATACGATAAA+TGG - chr1_1:4347880-4347899 Msa0002450:intron 30.0%
GGGAAATTAAAATCACTTCA+TGG - chr1_1:4347980-4347999 Msa0002450:intron 30.0%
CTTCATGGATTTACTAATCT+TGG - chr1_1:4347995-4348014 Msa0002450:intron 30.0%
TATACAATAAGGAGAATGGA+GGG + chr1_1:4348029-4348048 None:intergenic 30.0%
ATATACAATAAGGAGAATGG+AGG + chr1_1:4348030-4348049 None:intergenic 30.0%
! GACTTGTTTGGGAAATTTAA+AGG - chr1_1:4348051-4348070 Msa0002450:intron 30.0%
AATATTAATAGTCCGAGTCT+TGG + chr1_1:4348103-4348122 None:intergenic 30.0%
CTAAATTAGCTCACCTAAAT+TGG - chr1_1:4348184-4348203 Msa0002450:intron 30.0%
AAGTCATACTTGATTGAACT+CGG + chr1_1:4348290-4348309 None:intergenic 30.0%
TACCCCTAAAAAAATACACA+AGG + chr1_1:4348996-4349015 None:intergenic 30.0%
TGATGAAAAAAGAAGAGAGA+AGG + chr1_1:4349231-4349250 None:intergenic 30.0%
!!! TTATTTTAGTATGAAGCGGT+CGG + chr1_1:4349257-4349276 None:intergenic 30.0%
!! AGAGTTTTATAGAGGAGAAA+GGG + chr1_1:4349298-4349317 None:intergenic 30.0%
!! AAGAGTTTTATAGAGGAGAA+AGG + chr1_1:4349299-4349318 None:intergenic 30.0%
!!! GGGTTTTATTGTGAATATCA+AGG + chr1_1:4349431-4349450 None:intergenic 30.0%
! ATTTGAAGGAATGTTGTTTG+AGG - chr1_1:4349490-4349509 Msa0002450:intron 30.0%
! GTTTTATCCGATGCAAAAAT+TGG + chr1_1:4349551-4349570 None:intergenic 30.0%
GAGTATCAACAAAGACAATA+TGG + chr1_1:4350062-4350081 None:intergenic 30.0%
TTGGATATAATTTACTGGTG+TGG - chr1_1:4350371-4350390 Msa0002450:intron 30.0%
TGGATATAATTTACTGGTGT+GGG - chr1_1:4350372-4350391 Msa0002450:intron 30.0%
TGGTGGTAAATAAGTCTAAA+TGG - chr1_1:4350651-4350670 Msa0002450:intron 30.0%
! CTGATAACTTTGTTTCTTCT+TGG - chr1_1:4350781-4350800 Msa0002450:intron 30.0%
!! ACTTTGTTTCTTCTTGGTTT+TGG - chr1_1:4350787-4350806 Msa0002450:intron 30.0%
!!! TTTCTTCTTGGTTTTGGATT+AGG - chr1_1:4350793-4350812 Msa0002450:intron 30.0%
!!! TTCTTCTTGGTTTTGGATTA+GGG - chr1_1:4350794-4350813 Msa0002450:intron 30.0%
ATTTACGAACTTCTTCACTA+TGG - chr1_1:4350950-4350969 Msa0002450:intron 30.0%
!! TTGATATTGGTGCTAAATTC+AGG + chr1_1:4351186-4351205 None:intergenic 30.0%
TTTGTCAACAAAGGGAAATT+TGG + chr1_1:4351226-4351245 None:intergenic 30.0%
GATGATTAATTCGATCAGTT+TGG - chr1_1:4351263-4351282 Msa0002450:intron 30.0%
! ATCAGTTTGGTAATATCTGT+TGG - chr1_1:4351276-4351295 Msa0002450:intron 30.0%
! TCAGTTTGGTAATATCTGTT+GGG - chr1_1:4351277-4351296 Msa0002450:intron 30.0%
ACTTATCAAGAACATAAAGC+AGG + chr1_1:4351331-4351350 None:intergenic 30.0%
! ATGTAAGCATTCCTTTTAAG+AGG + chr1_1:4351416-4351435 None:intergenic 30.0%
! TTTTGCAGTTAATATCCTTG+AGG - chr1_1:4351508-4351527 Msa0002450:five_prime_UTR 30.0%
TTTGCAGTTAATATCCTTGA+GGG - chr1_1:4351509-4351528 Msa0002450:five_prime_UTR 30.0%
! CACATCTATTTGAAATGCTT+GGG + chr1_1:4351643-4351662 None:intergenic 30.0%
! TCACATCTATTTGAAATGCT+TGG + chr1_1:4351644-4351663 None:intergenic 30.0%
AGCATTTCAAATAGATGTGA+TGG - chr1_1:4351644-4351663 Msa0002450:intron 30.0%
GCATTTCAAATAGATGTGAT+GGG - chr1_1:4351645-4351664 Msa0002450:intron 30.0%
TTCTATGACAATTGGCATAA+GGG + chr1_1:4343939-4343958 None:intergenic 30.0%
ATTCTATGACAATTGGCATA+AGG + chr1_1:4343940-4343959 None:intergenic 30.0%
AGAGCTTATTCTATGACAAT+TGG + chr1_1:4351803-4351822 None:intergenic 30.0%
! TATCTGATGTGGTTTAGTTT+GGG - chr1_1:4351914-4351933 Msa0002450:five_prime_UTR 30.0%
GTTAGACATGATGAAAACAA+AGG - chr1_1:4344169-4344188 Msa0002450:intron 30.0%
GTGATTGTGTTCTTAAATGG+AGG + chr1_1:4341543-4341562 None:intergenic 35.0%
GTGGTGATTGTGTTCTTAAA+TGG + chr1_1:4341546-4341565 None:intergenic 35.0%
ATATGAGAGAAGAACAATGG+TGG + chr1_1:4341565-4341584 None:intergenic 35.0%
! CTCTCATATAGATTTTGCGA+TGG - chr1_1:4341576-4341595 Msa0002450:intron 35.0%
! TCATATAGATTTTGCGATGG+TGG - chr1_1:4341579-4341598 Msa0002450:intron 35.0%
GGAAATAATTCTGTCATGGA+AGG - chr1_1:4342733-4342752 Msa0002450:intron 35.0%
TGAAGTGGTAATCATCAAAC+AGG + chr1_1:4342764-4342783 None:intergenic 35.0%
AATATGCAATAGCAACTTGC+AGG - chr1_1:4343003-4343022 Msa0002450:intron 35.0%
GACTTGCAAATTGCAATCTA+TGG - chr1_1:4343072-4343091 Msa0002450:intron 35.0%
AAGTAGCTTCCACTAATGTT+AGG + chr1_1:4343193-4343212 None:intergenic 35.0%
GATAACGTAAACACATGACA+AGG + chr1_1:4343261-4343280 None:intergenic 35.0%
TGTTTACGTTATCGATGTCA+TGG - chr1_1:4343268-4343287 Msa0002450:intron 35.0%
GTATTTAACCTTCTGCTTTC+TGG - chr1_1:4343517-4343536 Msa0002450:intron 35.0%
TAGATTTCATCGGATGCATA+AGG + chr1_1:4343809-4343828 None:intergenic 35.0%
TATTGGATGTGGTTGAGTTT+GGG - chr1_1:4344109-4344128 Msa0002450:intron 35.0%
! GTGACTTGTGAGCATTTAAA+AGG - chr1_1:4344399-4344418 Msa0002450:intron 35.0%
TCCAACTGCAAAAAATGAAG+AGG - chr1_1:4344508-4344527 Msa0002450:intron 35.0%
!!! TCCTCTTCATTTTTTGCAGT+TGG + chr1_1:4344512-4344531 None:intergenic 35.0%
TTGAAGGTTTGCATATGTCT+GGG + chr1_1:4344840-4344859 None:intergenic 35.0%
TTTGAAGGTTTGCATATGTC+TGG + chr1_1:4344841-4344860 None:intergenic 35.0%
CATTTGAGCATTCATAGGTT+CGG - chr1_1:4345031-4345050 Msa0002450:intron 35.0%
CGAATGCATTCTTACTCTAT+TGG - chr1_1:4345322-4345341 Msa0002450:intron 35.0%
TGCATTCTTACTCTATTGGT+TGG - chr1_1:4345326-4345345 Msa0002450:intron 35.0%
!! TATTGGTTGGCTTATGATAC+TGG - chr1_1:4345339-4345358 Msa0002450:intron 35.0%
!! ATTGGTTGGCTTATGATACT+GGG - chr1_1:4345340-4345359 Msa0002450:intron 35.0%
!! ACTTTCAAGTATTGATCTGG+AGG - chr1_1:4345403-4345422 Msa0002450:intron 35.0%
!! TCTTTGAAGTATTGATCTGC+AGG - chr1_1:4345445-4345464 Msa0002450:intron 35.0%
TCATCATCAAAACCATTTGG+TGG - chr1_1:4345538-4345557 Msa0002450:intron 35.0%
CATCATCAAAACCATTTGGT+GGG - chr1_1:4345539-4345558 Msa0002450:intron 35.0%
CATATACGCTATACTACCTT+CGG + chr1_1:4345599-4345618 None:intergenic 35.0%
TATTGGACTTCAATTCTTGG+AGG - chr1_1:4345648-4345667 Msa0002450:five_prime_UTR 35.0%
GGAGGAAATTCACAAAGATA+AGG - chr1_1:4345666-4345685 Msa0002450:intron 35.0%
!!! CTGATTGCTCTTGTTTTTTG+TGG - chr1_1:4345954-4345973 Msa0002450:intron 35.0%
TGGTTAATATGCACATTTCC+AGG - chr1_1:4345974-4345993 Msa0002450:intron 35.0%
GGTTAATATGCACATTTCCA+GGG - chr1_1:4345975-4345994 Msa0002450:intron 35.0%
TACAGTATGTGAATCTAGCT+GGG + chr1_1:4346040-4346059 None:intergenic 35.0%
! AATAGATGTGATGGGACAAA+AGG - chr1_1:4346137-4346156 Msa0002450:intron 35.0%
CAAAAGGCTTATTAGCATAG+TGG - chr1_1:4346153-4346172 Msa0002450:intron 35.0%
! TGTTTGTTAGCAATGGGATA+TGG - chr1_1:4346448-4346467 Msa0002450:intron 35.0%
AATGGGATATGGTTGAGTTT+GGG - chr1_1:4346459-4346478 Msa0002450:intron 35.0%
! GTGACTTGTGAGCATTTAAA+TGG - chr1_1:4344399-4344418 Msa0002450:intron 35.0%
ATGCAACTGCAAAAATGAAG+AGG - chr1_1:4346893-4346912 Msa0002450:five_prime_UTR 35.0%
AGAGTCGAGTATTATAAGGT+GGG - chr1_1:4347202-4347221 Msa0002450:intron 35.0%
! TTAGTATATGCCTTGTTCCA+TGG - chr1_1:4347479-4347498 Msa0002450:intron 35.0%
! TTAGTATATGCCTTGTTCCA+TGG - chr1_1:4347479-4347498 Msa0002450:intron 35.0%
ATTATCTATTCTTCTTGGGG+TGG - chr1_1:4347603-4347622 Msa0002450:intron 35.0%
! CTATGATTTCCTCTTTTGAC+AGG - chr1_1:4347763-4347782 Msa0002450:five_prime_UTR 35.0%
CTCAATAAAGACAAGCAGTA+AGG - chr1_1:4347955-4347974 Msa0002450:intron 35.0%
ATAAAGACAAGCAGTAAGGA+AGG - chr1_1:4347959-4347978 Msa0002450:intron 35.0%
TAAAGACAAGCAGTAAGGAA+GGG - chr1_1:4347960-4347979 Msa0002450:intron 35.0%
CATGGATTTACTAATCTTGG+AGG - chr1_1:4347998-4348017 Msa0002450:intron 35.0%
ATACAATAAGGAGAATGGAG+GGG + chr1_1:4348028-4348047 None:intergenic 35.0%
!! TTAAAGGACTCAGAGGTATT+TGG - chr1_1:4348067-4348086 Msa0002450:intron 35.0%
! TGGTACTAGCTTAAACAAAG+AGG + chr1_1:4348658-4348677 None:intergenic 35.0%
! TTCTTGATGAAAAGCACATG+TGG - chr1_1:4349035-4349054 Msa0002450:intron 35.0%
AGAAAAGAGAAGGGTAAGAA+GGG + chr1_1:4349166-4349185 None:intergenic 35.0%
AAGAAAAGAGAAGGGTAAGA+AGG + chr1_1:4349167-4349186 None:intergenic 35.0%
TGAAAAAAGAAGAGAGAAGG+TGG + chr1_1:4349228-4349247 None:intergenic 35.0%
!! AGTTTTATAGAGGAGAAAGG+GGG + chr1_1:4349296-4349315 None:intergenic 35.0%
!! GAGTTTTATAGAGGAGAAAG+GGG + chr1_1:4349297-4349316 None:intergenic 35.0%
TTGTAACTTGGTTTCGTCAA+TGG + chr1_1:4349398-4349417 None:intergenic 35.0%
! TTTTCACCTCAGCTATTTGA+AGG - chr1_1:4349476-4349495 Msa0002450:intron 35.0%
AACATTCCTTCAAATAGCTG+AGG + chr1_1:4349485-4349504 None:intergenic 35.0%
! GGATCTACCAATTTTTGCAT+CGG - chr1_1:4349541-4349560 Msa0002450:intron 35.0%
TACTCATATCCCGATTCAAA+TGG - chr1_1:4350077-4350096 Msa0002450:intron 35.0%
CTCATCATAACATGGGAAAT+TGG + chr1_1:4350149-4350168 None:intergenic 35.0%
AATGGCTCTCATCATAACAT+GGG + chr1_1:4350156-4350175 None:intergenic 35.0%
TAATGGCTCTCATCATAACA+TGG + chr1_1:4350157-4350176 None:intergenic 35.0%
ATTCTTATCAAATTTGGCCG+AGG + chr1_1:4350182-4350201 None:intergenic 35.0%
! ATGCTTTCAAGTACCTTTCT+TGG - chr1_1:4350248-4350267 Msa0002450:intron 35.0%
! AAGTACCTTTCTTGGACTTT+TGG - chr1_1:4350256-4350275 Msa0002450:intron 35.0%
GCTGTAAGTGAGGTAAATTT+GGG - chr1_1:4350606-4350625 Msa0002450:intron 35.0%
!!! TCTTCTTGGTTTTGGATTAG+GGG - chr1_1:4350795-4350814 Msa0002450:intron 35.0%
TTGAAAGTTGCAATGATGTC+AGG + chr1_1:4350831-4350850 None:intergenic 35.0%
GCAACTTTCAAAGTCATTGA+TGG - chr1_1:4350840-4350859 Msa0002450:intron 35.0%
! CTATGAAGTTTTTCGTCGAA+TGG - chr1_1:4350882-4350901 Msa0002450:intron 35.0%
AACTTTGCTCGCTAATATCT+TGG - chr1_1:4351026-4351045 Msa0002450:intron 35.0%
ACTTTGCTCGCTAATATCTT+GGG - chr1_1:4351027-4351046 Msa0002450:intron 35.0%
TGGTTGTTTAGCCTCTTAAA+AGG - chr1_1:4351402-4351421 Msa0002450:intron 35.0%
GAGAGAAAAAAACGTACAGT+AGG + chr1_1:4351568-4351587 None:intergenic 35.0%
! AATAGATGTGATGGGACAAA+AGG - chr1_1:4346137-4346156 Msa0002450:intron 35.0%
TTCTTTGTCAGTATCTGATG+TGG - chr1_1:4351903-4351922 Msa0002450:five_prime_UTR 35.0%
GTATCTGATGTGGTTTAGTT+TGG - chr1_1:4351913-4351932 Msa0002450:five_prime_UTR 35.0%
!! ATCTGATGTGGTTTAGTTTG+GGG - chr1_1:4351915-4351934 Msa0002450:five_prime_UTR 35.0%
GAGAATGAATGTATGGCTGT+AGG + chr1_1:4341438-4341457 None:intergenic 40.0%
GTTCTTAAATGGAGGTCGAA+CGG + chr1_1:4341535-4341554 None:intergenic 40.0%
!! TATAGATTTTGCGATGGTGG+AGG - chr1_1:4341582-4341601 Msa0002450:intron 40.0%
! GTTTTTACCATCTCGATCCT+CGG + chr1_1:4341628-4341647 None:intergenic 40.0%
TCGAGTTAGGGTTTCATAGA+AGG - chr1_1:4341759-4341778 Msa0002450:intron 40.0%
GATGTTTCTTCAAAAGACGG+AGG - chr1_1:4341833-4341852 Msa0002450:exon 40.0%
TCTACAAAACTCACATGCAG+AGG + chr1_1:4341916-4341935 None:intergenic 40.0%
TTGCAACTTGTGTGCATGAA+TGG + chr1_1:4342214-4342233 None:intergenic 40.0%
CCAGGAATAAAGATCAACAG+AGG + chr1_1:4342435-4342454 None:intergenic 40.0%
CCTCTGTTGATCTTTATTCC+TGG - chr1_1:4342432-4342451 Msa0002450:intron 40.0%
CACCATCACATGTAAGGAAT+GGG + chr1_1:4343410-4343429 None:intergenic 40.0%
AATACCTGCTCTGATGTTGA+AGG + chr1_1:4343502-4343521 None:intergenic 40.0%
CCAATTTACCAGAAAGCAGA+AGG + chr1_1:4343528-4343547 None:intergenic 40.0%
! CCTTCTGCTTTCTGGTAAAT+TGG - chr1_1:4343525-4343544 Msa0002450:intron 40.0%
ATTGATAGAGACTGTCATGG+TGG + chr1_1:4343593-4343612 None:intergenic 40.0%
GTATTGGATGTGGTTGAGTT+TGG - chr1_1:4344108-4344127 Msa0002450:intron 40.0%
ATTGGATGTGGTTGAGTTTG+GGG - chr1_1:4344110-4344129 Msa0002450:intron 40.0%
! AATCGCATATGCAGCTTTGA+AGG + chr1_1:4344856-4344875 None:intergenic 40.0%
TCAAATCAAGTCCAAGTCCA+CGG + chr1_1:4344883-4344902 None:intergenic 40.0%
GCATTCGTAATTGCACGTTA+GGG + chr1_1:4345309-4345328 None:intergenic 40.0%
TGCATTCGTAATTGCACGTT+AGG + chr1_1:4345310-4345329 None:intergenic 40.0%
TTATGATACTGGGATGTCAG+TGG - chr1_1:4345350-4345369 Msa0002450:intron 40.0%
!! TCAAAACCATTTGGTGGGTT+TGG - chr1_1:4345544-4345563 Msa0002450:intron 40.0%
! TTTTCTCCAAACCCACCAAA+TGG + chr1_1:4345553-4345572 None:intergenic 40.0%
! TTGAAGAAGCATATGACCGA+AGG - chr1_1:4345580-4345599 Msa0002450:intron 40.0%
ACAGTATGTGAATCTAGCTG+GGG + chr1_1:4346039-4346058 None:intergenic 40.0%
GTACAGTATGTGAATCTAGC+TGG + chr1_1:4346041-4346060 None:intergenic 40.0%
CAATGGGATATGGTTGAGTT+TGG - chr1_1:4346458-4346477 Msa0002450:intron 40.0%
ATGGGATATGGTTGAGTTTG+GGG - chr1_1:4346460-4346479 Msa0002450:intron 40.0%
TATGGTTGAGTTTGGGGATA+TGG - chr1_1:4346466-4346485 Msa0002450:intron 40.0%
!! GAAGAAGCATTAGTTCAGCA+AGG - chr1_1:4346488-4346507 Msa0002450:intron 40.0%
CAACCCTTTCTGAATGCATA+GGG - chr1_1:4346599-4346618 Msa0002450:intron 40.0%
AACCCTTTCTGAATGCATAG+GGG - chr1_1:4346600-4346619 Msa0002450:intron 40.0%
AACCCCTATGCATTCAGAAA+GGG + chr1_1:4346605-4346624 None:intergenic 40.0%
AGGCAGAGTCGAGTATTATA+AGG - chr1_1:4347198-4347217 Msa0002450:intron 40.0%
CAGAGTCGAGTATTATAAGG+TGG - chr1_1:4347201-4347220 Msa0002450:intron 40.0%
TATAAAAGGGCCATGGAACA+AGG + chr1_1:4347492-4347511 None:intergenic 40.0%
! TCCATGGCCCTTTTATATGA+AGG - chr1_1:4347495-4347514 Msa0002450:intron 40.0%
TCCTTCATATAAAAGGGCCA+TGG + chr1_1:4347499-4347518 None:intergenic 40.0%
TATAAAAGGGCCATGGAACA+AGG + chr1_1:4347492-4347511 None:intergenic 40.0%
! TCCATGGCCCTTTTATATGA+AGG - chr1_1:4347495-4347514 Msa0002450:intron 40.0%
TCCTTCATATAAAAGGGCCA+TGG + chr1_1:4347499-4347518 None:intergenic 40.0%
GCATTTACAAGTTCTCTCCT+AGG - chr1_1:4347625-4347644 Msa0002450:intron 40.0%
TCAGTGACGTATCAAATGGA+CGG - chr1_1:4347711-4347730 Msa0002450:five_prime_UTR 40.0%
GATAACAGACCTGTCAAAAG+AGG + chr1_1:4347775-4347794 None:intergenic 40.0%
GGGAAATTTAAAGGACTCAG+AGG - chr1_1:4348060-4348079 Msa0002450:intron 40.0%
CAAAAATCTTGATGGAGCCA+TGG - chr1_1:4348366-4348385 Msa0002450:intron 40.0%
CTAATGGGATCGATGTAGAA+GGG + chr1_1:4348479-4348498 None:intergenic 40.0%
TCTAATGGGATCGATGTAGA+AGG + chr1_1:4348480-4348499 None:intergenic 40.0%
! GTTTTATAGAGGAGAAAGGG+GGG + chr1_1:4349295-4349314 None:intergenic 40.0%
GGAGGTTCTACTTTGTAACT+TGG + chr1_1:4349410-4349429 None:intergenic 40.0%
CAACACCAAAAGTCCAAGAA+AGG + chr1_1:4350264-4350283 None:intergenic 40.0%
! TTATGACTTGGCTGTAAGTG+AGG - chr1_1:4350596-4350615 Msa0002450:intron 40.0%
GGCTGTAAGTGAGGTAAATT+TGG - chr1_1:4350605-4350624 Msa0002450:intron 40.0%
!!! CTTCTTGGTTTTGGATTAGG+GGG - chr1_1:4350796-4350815 Msa0002450:intron 40.0%
!!! TTCTTGGTTTTGGATTAGGG+GGG - chr1_1:4350797-4350816 Msa0002450:intron 40.0%
TCATAGACCGTTGATGTTTC+AGG + chr1_1:4350868-4350887 None:intergenic 40.0%
CGAACTTCTTCACTATGGAA+TGG - chr1_1:4350955-4350974 Msa0002450:intron 40.0%
AACGTACAGTAGGTGAATCT+AGG + chr1_1:4351558-4351577 None:intergenic 40.0%
CAAGGCTACAACTCTGATGT+TGG + chr1_1:4341504-4341523 None:intergenic 45.0%
TTAAATGGAGGTCGAACGGT+TGG + chr1_1:4341531-4341550 None:intergenic 45.0%
! ACTTGCAGGTCCGCATTTTT+AGG - chr1_1:4343017-4343036 Msa0002450:intron 45.0%
CCACCATCACATGTAAGGAA+TGG + chr1_1:4343411-4343430 None:intergenic 45.0%
CCATTCCTTACATGTGATGG+TGG - chr1_1:4343408-4343427 Msa0002450:intron 45.0%
!! TTCCTTACATGTGATGGTGG+CGG - chr1_1:4343411-4343430 Msa0002450:intron 45.0%
CTGTGCTTAGTCTCTGATGT+TGG + chr1_1:4343468-4343487 None:intergenic 45.0%
CTAGAAGCAACAGTTCTGCA+AGG - chr1_1:4344138-4344157 Msa0002450:intron 45.0%
CAAATCAAGTCCAAGTCCAC+GGG + chr1_1:4344882-4344901 None:intergenic 45.0%
! ATTCATAGGTTCGGTCGTGT+AGG - chr1_1:4345040-4345059 Msa0002450:intron 45.0%
TTGCCTTATAGCAGCCATGA+AGG - chr1_1:4345694-4345713 Msa0002450:intron 45.0%
GTACCTTCATGGCTGCTATA+AGG + chr1_1:4345700-4345719 None:intergenic 45.0%
CAGTATGTGAATCTAGCTGG+GGG + chr1_1:4346038-4346057 None:intergenic 45.0%
CCTATGCATTCAGAAAGGGT+TGG + chr1_1:4346601-4346620 None:intergenic 45.0%
CCAACCCTTTCTGAATGCAT+AGG - chr1_1:4346598-4346617 Msa0002450:intron 45.0%
CAACCCCTATGCATTCAGAA+AGG + chr1_1:4346606-4346625 None:intergenic 45.0%
GGGTCCTATCACATAGTCAA+AGG + chr1_1:4346967-4346986 None:intergenic 45.0%
GTGGTGTTTACGCTCAGAAT+TGG - chr1_1:4347328-4347347 Msa0002450:intron 45.0%
TGACGTATCAAATGGACGGA+TGG - chr1_1:4347715-4347734 Msa0002450:five_prime_UTR 45.0%
GGCCTAAAGAATCCAAGACT+CGG - chr1_1:4348088-4348107 Msa0002450:intron 45.0%
GTCCGAGTCTTGGATTCTTT+AGG + chr1_1:4348093-4348112 None:intergenic 45.0%
!! AATGGTGGTGGAGAAGGAAA+AGG + chr1_1:4349201-4349220 None:intergenic 45.0%
AAGAGAGAAGGTGGATGCAA+TGG + chr1_1:4349219-4349238 None:intergenic 45.0%
TCGTCAATGGAAGCTTGTGA+TGG + chr1_1:4349385-4349404 None:intergenic 45.0%
TGATGAGAGCCATTACACCT+CGG - chr1_1:4350162-4350181 Msa0002450:intron 45.0%
CAAATTTGGCCGAGGTGTAA+TGG + chr1_1:4350174-4350193 None:intergenic 45.0%
!!! TCTTGGTTTTGGATTAGGGG+GGG - chr1_1:4350798-4350817 Msa0002450:intron 45.0%
GATGGTGCCTGAAACATCAA+CGG - chr1_1:4350858-4350877 Msa0002450:intron 45.0%
CTAGAAGCAACAGTTCTGCA+AGG - chr1_1:4344138-4344157 Msa0002450:intron 45.0%
!!! TAAAAACAAAATATTTTTTT+TGG + chr1_1:4344443-4344462 None:intergenic 5.0%
!!! TTTAAATAATATTTCTAATT+AGG - chr1_1:4346238-4346257 Msa0002450:intron 5.0%
!!! TTTTAATATTTAATATGTTT+TGG - chr1_1:4344060-4344079 Msa0002450:intron 5.0%
!! ATATAATTTACTTTATAATA+AGG - chr1_1:4346868-4346887 Msa0002450:five_prime_UTR 5.0%
!! TATAATTTACTTTATAATAA+GGG - chr1_1:4346869-4346888 Msa0002450:five_prime_UTR 5.0%
TTTACCATCTCGATCCTCGG+TGG + chr1_1:4341625-4341644 None:intergenic 50.0%
GGAATGGGCCTTGATCAGTA+TGG + chr1_1:4343395-4343414 None:intergenic 50.0%
GGCCCATTCCTTACATGTGA+TGG - chr1_1:4343405-4343424 Msa0002450:intron 50.0%
ATCGCCTTCAACATCAGAGC+AGG - chr1_1:4343495-4343514 Msa0002450:intron 50.0%
TGCATATGCGATTCTTCCCG+TGG - chr1_1:4344863-4344882 Msa0002450:intron 50.0%
AACTCACTAAGTTGCTGCCC+TGG + chr1_1:4345995-4346014 None:intergenic 50.0%
TGAATCTAGCTGGGGGAAGT+GGG + chr1_1:4346031-4346050 None:intergenic 50.0%
CATACGCAGGGTCAAGGAAA+GGG + chr1_1:4346987-4347006 None:intergenic 50.0%
TTTCCTTGACCCTGCGTATG+CGG - chr1_1:4346987-4347006 Msa0002450:intron 50.0%
CTAAAACTCCCGCATACGCA+GGG + chr1_1:4346999-4347018 None:intergenic 50.0%
ACTAAAACTCCCGCATACGC+AGG + chr1_1:4347000-4347019 None:intergenic 50.0%
TTTGTTCCCTGCCAGTCTTG+AGG - chr1_1:4347305-4347324 Msa0002450:intron 50.0%
TTGTTCCCTGCCAGTCTTGA+GGG - chr1_1:4347306-4347325 Msa0002450:intron 50.0%
GTAAACACCACCCTCAAGAC+TGG + chr1_1:4347319-4347338 None:intergenic 50.0%
AAATGGACGGATGGCTACGA+TGG - chr1_1:4347724-4347743 Msa0002450:five_prime_UTR 50.0%
AATGGACGGATGGCTACGAT+GGG - chr1_1:4347725-4347744 Msa0002450:five_prime_UTR 50.0%
! ACGTGTGAGAGAGGCACATA+AGG + chr1_1:4349064-4349083 None:intergenic 50.0%
GGGAACACATGCAGGCAAAT+GGG + chr1_1:4349146-4349165 None:intergenic 50.0%
AGGGAACACATGCAGGCAAA+TGG + chr1_1:4349147-4349166 None:intergenic 50.0%
GGTAAGAAGGGAACACATGC+AGG + chr1_1:4349154-4349173 None:intergenic 50.0%
AGAGAAGGTGGATGCAATGG+TGG + chr1_1:4349216-4349235 None:intergenic 50.0%
CAATGGAAGCTTGTGATGGC+TGG + chr1_1:4349381-4349400 None:intergenic 50.0%
TGGTTGTCTCATCACCCTCA+AGG + chr1_1:4351526-4351545 None:intergenic 50.0%
CAGTAGGTGAATCTAGGCGA+GGG + chr1_1:4351552-4351571 None:intergenic 50.0%
ACAGTAGGTGAATCTAGGCG+AGG + chr1_1:4351553-4351572 None:intergenic 50.0%
AGCCGCCACCATCACATGTA+AGG + chr1_1:4343416-4343435 None:intergenic 55.0%
TGCGATTCTTCCCGTGGACT+TGG - chr1_1:4344869-4344888 Msa0002450:intron 55.0%
GTGAATCTAGCTGGGGGAAG+TGG + chr1_1:4346032-4346051 None:intergenic 55.0%
GCATACGCAGGGTCAAGGAA+AGG + chr1_1:4346988-4347007 None:intergenic 55.0%
TTCCTTGACCCTGCGTATGC+GGG - chr1_1:4346988-4347007 Msa0002450:intron 55.0%
!! TGCGGGAGTTTTAGTGCACC+AGG - chr1_1:4347005-4347024 Msa0002450:intron 55.0%
GATGCTGACACGTGTGAGAG+AGG + chr1_1:4349073-4349092 None:intergenic 55.0%
!! GGATGCAATGGTGGTGGAGA+AGG + chr1_1:4349207-4349226 None:intergenic 55.0%
GAAGGTGGATGCAATGGTGG+TGG + chr1_1:4349213-4349232 None:intergenic 55.0%
GAAAGGGGGGATCATGATGG+TGG + chr1_1:4349282-4349301 None:intergenic 55.0%
GGAGAAAGGGGGGATCATGA+TGG + chr1_1:4349285-4349304 None:intergenic 55.0%
GTGAATCTAGGCGAGGGAAG+TGG + chr1_1:4351546-4351565 None:intergenic 55.0%
GGTCGAACGGTTGGCATGCA+AGG + chr1_1:4341522-4341541 None:intergenic 60.0%
ACAGACATGCAACGCCACCG+AGG - chr1_1:4341608-4341627 Msa0002450:intron 60.0%
AACGCCACCGAGGATCGAGA+TGG - chr1_1:4341618-4341637 Msa0002450:intron 60.0%
TTCCCTGCCAGTCTTGAGGG+TGG - chr1_1:4347309-4347328 Msa0002450:intron 60.0%
CACCACCCTCAAGACTGGCA+GGG + chr1_1:4347314-4347333 None:intergenic 60.0%
ACACCACCCTCAAGACTGGC+AGG + chr1_1:4347315-4347334 None:intergenic 60.0%
CTCCCGCATACGCAGGGTCA+AGG + chr1_1:4346993-4347012 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 4341392 4352003 4341392 ID=Msa0002450;Name=Msa0002450
chr1_1 mRNA 4341392 4352003 4341392 ID=Msa0002450-mRNA-1;Parent=Msa0002450;Name=Msa0002450-mRNA-1;_AED=0.36;_eAED=0.36;_QI=936|1|1|1|0.1|0.09|11|101|55
chr1_1 exon 4341392 4341481 4341392 ID=Msa0002450-mRNA-1:exon:1363;Parent=Msa0002450-mRNA-1
chr1_1 exon 4341825 4341879 4341825 ID=Msa0002450-mRNA-1:exon:1362;Parent=Msa0002450-mRNA-1
chr1_1 exon 4342449 4342580 4342449 ID=Msa0002450-mRNA-1:exon:1361;Parent=Msa0002450-mRNA-1
chr1_1 exon 4345611 4345680 4345611 ID=Msa0002450-mRNA-1:exon:1360;Parent=Msa0002450-mRNA-1
chr1_1 exon 4346852 4346937 4346852 ID=Msa0002450-mRNA-1:exon:1359;Parent=Msa0002450-mRNA-1
chr1_1 exon 4347339 4347399 4347339 ID=Msa0002450-mRNA-1:exon:1358;Parent=Msa0002450-mRNA-1
chr1_1 exon 4347680 4347872 4347680 ID=Msa0002450-mRNA-1:exon:1357;Parent=Msa0002450-mRNA-1
chr1_1 exon 4349201 4349286 4349201 ID=Msa0002450-mRNA-1:exon:1356;Parent=Msa0002450-mRNA-1
chr1_1 exon 4349879 4349989 4349879 ID=Msa0002450-mRNA-1:exon:1355;Parent=Msa0002450-mRNA-1
chr1_1 exon 4351474 4351546 4351474 ID=Msa0002450-mRNA-1:exon:1354;Parent=Msa0002450-mRNA-1
chr1_1 exon 4351756 4352003 4351756 ID=Msa0002450-mRNA-1:exon:1353;Parent=Msa0002450-mRNA-1
chr1_1 five_prime_UTR 4351756 4352003 4351756 ID=Msa0002450-mRNA-1:five_prime_utr;Parent=Msa0002450-mRNA-1
chr1_1 five_prime_UTR 4351474 4351546 4351474 ID=Msa0002450-mRNA-1:five_prime_utr;Parent=Msa0002450-mRNA-1
chr1_1 five_prime_UTR 4349879 4349989 4349879 ID=Msa0002450-mRNA-1:five_prime_utr;Parent=Msa0002450-mRNA-1
chr1_1 five_prime_UTR 4349201 4349286 4349201 ID=Msa0002450-mRNA-1:five_prime_utr;Parent=Msa0002450-mRNA-1
chr1_1 five_prime_UTR 4347680 4347872 4347680 ID=Msa0002450-mRNA-1:five_prime_utr;Parent=Msa0002450-mRNA-1
chr1_1 five_prime_UTR 4347339 4347399 4347339 ID=Msa0002450-mRNA-1:five_prime_utr;Parent=Msa0002450-mRNA-1
chr1_1 five_prime_UTR 4346852 4346937 4346852 ID=Msa0002450-mRNA-1:five_prime_utr;Parent=Msa0002450-mRNA-1
chr1_1 five_prime_UTR 4345611 4345680 4345611 ID=Msa0002450-mRNA-1:five_prime_utr;Parent=Msa0002450-mRNA-1
chr1_1 five_prime_UTR 4342573 4342580 4342573 ID=Msa0002450-mRNA-1:five_prime_utr;Parent=Msa0002450-mRNA-1
chr1_1 CDS 4342449 4342572 4342449 ID=Msa0002450-mRNA-1:cds;Parent=Msa0002450-mRNA-1
chr1_1 CDS 4341836 4341879 4341836 ID=Msa0002450-mRNA-1:cds;Parent=Msa0002450-mRNA-1
chr1_1 three_prime_UTR 4341825 4341835 4341825 ID=Msa0002450-mRNA-1:three_prime_utr;Parent=Msa0002450-mRNA-1
chr1_1 three_prime_UTR 4341392 4341481 4341392 ID=Msa0002450-mRNA-1:three_prime_utr;Parent=Msa0002450-mRNA-1
Gene Sequence

>Msa0002450

ATGAACCTGACATCATTGCAACTTTCAAAGTCATTGATGGTGCCTGAAACATCAACGGTCTATGAAGTTTTTCGTCGAATGGCTGTTTGCAGAGTAGATGCTCAATTTCTAACTGATTCAAATGTTAATATCCTTGAGGGTGATGAGACAACCACTTCCCTCGCCTAG

Protein sequence

>Msa0002450

MNLTSLQLSKSLMVPETSTVYEVFRRMAVCRVDAQFLTDSNVNILEGDETTTSLA*