Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002450 | Msa0423920 | 0.875956 | 2.046132e-68 | -8.615850e-47 |
| Msa0002450 | Msa0555880 | 0.973779 | 5.195528e-137 | -8.615850e-47 |
| Msa0002450 | Msa0568810 | 0.807614 | 4.638523e-50 | -8.615850e-47 |
| Msa0002450 | Msa0636750 | 0.803372 | 3.596938e-49 | -8.615850e-47 |
| Msa0002450 | Msa0684910 | 0.804225 | 2.392415e-49 | -8.615850e-47 |
| Msa0002450 | Msa0900900 | 0.829341 | 5.434322e-55 | -8.615850e-47 |
| Msa0002450 | Msa0947330 | 0.868044 | 8.743088e-66 | -8.615850e-47 |
| Msa0002450 | Msa0962310 | 0.921096 | 5.540338e-88 | -8.615850e-47 |
| Msa0002450 | Msa1394710 | 0.847623 | 1.028862e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002450 | MtrunA17_Chr8g0386311 | 75.676 | 37 | 9 | 0 | 5 | 41 | 44 | 80 | 2.07e-11 | 56.6 |
| Msa0002450 | MtrunA17_Chr3g0132111 | 69.231 | 39 | 12 | 0 | 3 | 41 | 41 | 79 | 6.32e-11 | 55.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 75 sgRNAs with CRISPR-Local
Find 527 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGTTGAGTTTGGGGATA+TGG | 0.204068 | 1_1:-4346907 | Msa0002450:five_prime_UTR |
| CAATGGGATATGGTTGAGTT+TGG | 0.233721 | 1_1:-4346915 | Msa0002450:five_prime_UTR |
| TCATAGACCGTTGATGTTTC+AGG | 0.247801 | 1_1:+4342508 | None:intergenic |
| TAGGAAGAAGAGAAAGAAAA+AGG | 0.281810 | 1_1:+4351957 | None:intergenic |
| TATTGGATGTGGTTGAGTTT+GGG | 0.284981 | 1_1:-4349264 | Msa0002450:five_prime_UTR |
| TATCTGATGTGGTTTAGTTT+GGG | 0.288954 | 1_1:-4341459 | Msa0002450:three_prime_UTR |
| TCAAAACCATTTGGTGGGTT+TGG | 0.293130 | 1_1:-4347829 | Msa0002450:five_prime_UTR |
| GTATCTGATGTGGTTTAGTT+TGG | 0.306306 | 1_1:-4341460 | Msa0002450:three_prime_UTR |
| GTATTGGATGTGGTTGAGTT+TGG | 0.319554 | 1_1:-4349265 | Msa0002450:five_prime_UTR |
| GCAACTTTCAAAGTCATTGA+TGG | 0.343752 | 1_1:-4342533 | Msa0002450:CDS |
| GTGGTGATTGTGTTCTTAAA+TGG | 0.344282 | 1_1:+4351830 | None:intergenic |
| ACATATTGGACTTCAATTCT+TGG | 0.348432 | 1_1:-4347728 | Msa0002450:five_prime_UTR |
| GTACCTTCATGGCTGCTATA+AGG | 0.356886 | 1_1:+4347676 | None:intergenic |
| TGTTTGTTAGCAATGGGATA+TGG | 0.369203 | 1_1:-4346925 | Msa0002450:intron |
| AATGGGATATGGTTGAGTTT+GGG | 0.371906 | 1_1:-4346914 | Msa0002450:five_prime_UTR |
| AATTCATCATCAAAACCATT+TGG | 0.420979 | 1_1:-4347838 | Msa0002450:five_prime_UTR |
| TTGAAAGTTGCAATGATGTC+AGG | 0.435539 | 1_1:+4342545 | None:intergenic |
| AACTAACAGACAGAACATAT+TGG | 0.455086 | 1_1:-4347742 | Msa0002450:five_prime_UTR |
| CACCATCACATGTAAGGAAT+GGG | 0.470717 | 1_1:+4349966 | None:intergenic |
| TTTGCAGTTAATATCCTTGA+GGG | 0.481204 | 1_1:-4341864 | Msa0002450:intron |
| AATACCTGCTCTGATGTTGA+AGG | 0.486227 | 1_1:+4349874 | None:intergenic |
| TATTTCAGTGACGTATCAAA+TGG | 0.486620 | 1_1:-4345666 | Msa0002450:intron |
| CCACCATCACATGTAAGGAA+TGG | 0.487274 | 1_1:+4349965 | None:intergenic |
| CATCATCAAAACCATTTGGT+GGG | 0.490956 | 1_1:-4347834 | Msa0002450:five_prime_UTR |
| AGCCGCCACCATCACATGTA+AGG | 0.491245 | 1_1:+4349960 | None:intergenic |
| CAATTTCTAACTGATTCAAA+TGG | 0.497571 | 1_1:-4342448 | Msa0002450:intron |
| TATTGGACTTCAATTCTTGG+AGG | 0.497740 | 1_1:-4347725 | Msa0002450:five_prime_UTR |
| ATCTGATGTGGTTTAGTTTG+GGG | 0.498692 | 1_1:-4341458 | Msa0002450:three_prime_UTR |
| CATATACGCTATACTACCTT+CGG | 0.498868 | 1_1:+4347777 | None:intergenic |
| CTGTGCTTAGTCTCTGATGT+TGG | 0.504230 | 1_1:+4349908 | None:intergenic |
| ATTGGATGTGGTTGAGTTTG+GGG | 0.506776 | 1_1:-4349263 | Msa0002450:five_prime_UTR |
| GGTCGAACGGTTGGCATGCA+AGG | 0.509562 | 1_1:+4351854 | None:intergenic |
| GTACAGTATGTGAATCTAGC+TGG | 0.510612 | 1_1:+4347335 | None:intergenic |
| CAAGGCTACAACTCTGATGT+TGG | 0.514552 | 1_1:+4351872 | None:intergenic |
| GATAACAGACCTGTCAAAAG+AGG | 0.517452 | 1_1:+4345601 | None:intergenic |
| AAATGGACGGATGGCTACGA+TGG | 0.519451 | 1_1:-4345649 | Msa0002450:five_prime_UTR |
| TCATCATCAAAACCATTTGG+TGG | 0.520783 | 1_1:-4347835 | Msa0002450:five_prime_UTR |
| ATGGGATATGGTTGAGTTTG+GGG | 0.521966 | 1_1:-4346913 | Msa0002450:five_prime_UTR |
| TACAGTATGTGAATCTAGCT+GGG | 0.522078 | 1_1:+4347336 | None:intergenic |
| GGAGGAAATTCACAAAGATA+AGG | 0.522244 | 1_1:-4347707 | Msa0002450:five_prime_UTR |
| TTGTTTGTTAGTATTGGATG+TGG | 0.532339 | 1_1:-4349275 | Msa0002450:intron |
| GTTAAATGAGAATGAATGTA+TGG | 0.538944 | 1_1:+4351931 | None:intergenic |
| GGCCCATTCCTTACATGTGA+TGG | 0.543482 | 1_1:-4349968 | Msa0002450:five_prime_UTR |
| GTGAATCTAGGCGAGGGAAG+TGG | 0.550537 | 1_1:+4341830 | None:intergenic |
| TTAAATGGAGGTCGAACGGT+TGG | 0.553776 | 1_1:+4351845 | None:intergenic |
| AACGTACAGTAGGTGAATCT+AGG | 0.553854 | 1_1:+4341818 | None:intergenic |
| ATCGCCTTCAACATCAGAGC+AGG | 0.555332 | 1_1:-4349878 | Msa0002450:intron |
| TTCTTTGTCAGTATCTGATG+TGG | 0.581703 | 1_1:-4341470 | Msa0002450:intron |
| TTGCCTTATAGCAGCCATGA+AGG | 0.584074 | 1_1:-4347679 | Msa0002450:intron |
| GTTCTTAAATGGAGGTCGAA+CGG | 0.594236 | 1_1:+4351841 | None:intergenic |
| CCATTCCTTACATGTGATGG+TGG | 0.603991 | 1_1:-4349965 | Msa0002450:five_prime_UTR |
| TGGTTGTCTCATCACCCTCA+AGG | 0.606403 | 1_1:+4341850 | None:intergenic |
| TGACGTATCAAATGGACGGA+TGG | 0.606896 | 1_1:-4345658 | Msa0002450:five_prime_UTR |
| TTCCTTACATGTGATGGTGG+CGG | 0.615743 | 1_1:-4349962 | Msa0002450:five_prime_UTR |
| CAGTAGGTGAATCTAGGCGA+GGG | 0.620624 | 1_1:+4341824 | None:intergenic |
| GAGAATGAATGTATGGCTGT+AGG | 0.622146 | 1_1:+4351938 | None:intergenic |
| GTGATTGTGTTCTTAAATGG+AGG | 0.624650 | 1_1:+4351833 | None:intergenic |
| TTTACCATCTCGATCCTCGG+TGG | 0.626398 | 1_1:+4351751 | None:intergenic |
| AATGGACGGATGGCTACGAT+GGG | 0.631048 | 1_1:-4345648 | Msa0002450:five_prime_UTR |
| CTAGAAGCAACAGTTCTGCA+AGG | 0.631238 | 1_1:-4341430 | Msa0002450:three_prime_UTR |
| CTAGAAGCAACAGTTCTGCA+AGG | 0.631238 | 1_1:-4349235 | Msa0002450:five_prime_UTR |
| TCTACAAAACTCACATGCAG+AGG | 0.631811 | 1_1:+4351460 | None:intergenic |
| GAAGAAGCATTAGTTCAGCA+AGG | 0.633978 | 1_1:-4346885 | Msa0002450:five_prime_UTR |
| TTGAAGAAGCATATGACCGA+AGG | 0.637274 | 1_1:-4347793 | Msa0002450:five_prime_UTR |
| TCTATATGAGAGAAGAACAA+TGG | 0.637744 | 1_1:+4351808 | None:intergenic |
| TCAGTGACGTATCAAATGGA+CGG | 0.638041 | 1_1:-4345662 | Msa0002450:intron |
| GTTAGACATGATGAAAACAA+AGG | 0.640821 | 1_1:-4341399 | Msa0002450:three_prime_UTR |
| GTTAGACATGATGAAAACAA+AGG | 0.640821 | 1_1:-4349204 | Msa0002450:five_prime_UTR |
| ACAGTAGGTGAATCTAGGCG+AGG | 0.644049 | 1_1:+4341823 | None:intergenic |
| GATGGTGCCTGAAACATCAA+CGG | 0.665675 | 1_1:-4342515 | Msa0002450:CDS |
| ACAGTATGTGAATCTAGCTG+GGG | 0.667908 | 1_1:+4347337 | None:intergenic |
| AACGCCACCGAGGATCGAGA+TGG | 0.668682 | 1_1:-4351755 | Msa0002450:intron |
| CAGTATGTGAATCTAGCTGG+GGG | 0.695680 | 1_1:+4347338 | None:intergenic |
| ATATGAGAGAAGAACAATGG+TGG | 0.698548 | 1_1:+4351811 | None:intergenic |
| ACAGACATGCAACGCCACCG+AGG | 0.718809 | 1_1:-4351765 | Msa0002450:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAATATTTTTTATAAAT+AGG | - | chr1_1:4348882-4348901 | Msa0002450:intron | 0.0% |
| !!! | TAAAAATATTATTTAAAATT+TGG | + | chr1_1:4351748-4351767 | None:intergenic | 0.0% |
| !!! | TTTAAATAATATTTTTAATT+AGG | - | chr1_1:4351751-4351770 | Msa0002450:intron | 0.0% |
| !! | ATGAAAAATACATATAAATA+TGG | + | chr1_1:4342161-4342180 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAATTTTTATTCC+TGG | - | chr1_1:4342496-4342515 | Msa0002450:CDS | 10.0% |
| !! | AGAAGAAAATTAAAAATATA+TGG | - | chr1_1:4342945-4342964 | Msa0002450:intron | 10.0% |
| !! | ATTAAATTAGTAATTGTATT+CGG | + | chr1_1:4343168-4343187 | None:intergenic | 10.0% |
| !!! | AATTTAACAACATTATTTTA+AGG | - | chr1_1:4343610-4343629 | Msa0002450:intron | 10.0% |
| !! | AAGAATAAACTTAATTAAAA+TGG | + | chr1_1:4346074-4346093 | None:intergenic | 10.0% |
| !!! | TAGAAATATTATTTAAAATC+AGG | + | chr1_1:4346235-4346254 | None:intergenic | 10.0% |
| !! | AAACACATAATTTAAAAAAA+GGG | + | chr1_1:4347034-4347053 | None:intergenic | 10.0% |
| !!! | TAAAAACAATAGTTTTTATT+TGG | - | chr1_1:4347141-4347160 | Msa0002450:intron | 10.0% |
| !! | AAAATAAATTAATCGATAAT+AGG | - | chr1_1:4348263-4348282 | Msa0002450:intron | 10.0% |
| !!! | ACAAAATTTTCAATAAAATA+AGG | - | chr1_1:4348938-4348957 | Msa0002450:intron | 10.0% |
| !!! | CAAATTTAGAATTAAAAAAA+TGG | + | chr1_1:4349730-4349749 | None:intergenic | 10.0% |
| !! | ATAAACAAAATATAAACTAA+TGG | + | chr1_1:4349778-4349797 | None:intergenic | 10.0% |
| !!! | TGTTATTATTATTATTTTCT+TGG | - | chr1_1:4349839-4349858 | Msa0002450:intron | 10.0% |
| !!! | GTTATTATTATTATTTTCTT+GGG | - | chr1_1:4349840-4349859 | Msa0002450:intron | 10.0% |
| !! | GTTAATATAATTTAACAAAA+AGG | + | chr1_1:4350498-4350517 | None:intergenic | 10.0% |
| !!! | GTTTATCATTTTTTTTTTAT+TGG | - | chr1_1:4350631-4350650 | Msa0002450:intron | 10.0% |
| !!! | ACAATTTTTTTATCTGTATT+TGG | - | chr1_1:4341683-4341702 | Msa0002450:intron | 15.0% |
| !! | TTGATCTATGAAATTTAAAT+TGG | - | chr1_1:4341976-4341995 | Msa0002450:intron | 15.0% |
| !! | TTCATAAATTTGTATTAATG+TGG | - | chr1_1:4342118-4342137 | Msa0002450:intron | 15.0% |
| !!! | AATACTAACATTTTTAGTAA+AGG | + | chr1_1:4342271-4342290 | None:intergenic | 15.0% |
| !!! | ATACTTAATTTGTTGTTTTA+TGG | - | chr1_1:4342621-4342640 | Msa0002450:intron | 15.0% |
| !! | GGTTATATTTATTACTAATA+GGG | + | chr1_1:4343147-4343166 | None:intergenic | 15.0% |
| !!! | TAAAAACATCACATTTTAAA+TGG | + | chr1_1:4343564-4343583 | None:intergenic | 15.0% |
| !! | ATTGAAATTATGTTTCAAAT+TGG | - | chr1_1:4343774-4343793 | Msa0002450:intron | 15.0% |
| !! | TCATTAAGATATTATAACAA+GGG | - | chr1_1:4344483-4344502 | Msa0002450:intron | 15.0% |
| !!! | CTTTTTAACTTATCATTTAA+TGG | + | chr1_1:4344555-4344574 | None:intergenic | 15.0% |
| !!! | TAAAAAATCTTGTCAATTTT+AGG | + | chr1_1:4345080-4345099 | None:intergenic | 15.0% |
| !!! | TTAGATTGTTTTTAATCTTT+TGG | - | chr1_1:4345733-4345752 | Msa0002450:intron | 15.0% |
| !!! | ATATGAATCAATTTGTTTTT+AGG | + | chr1_1:4345763-4345782 | None:intergenic | 15.0% |
| !! | ATAAACTTAATTAAAATGGA+CGG | + | chr1_1:4346070-4346089 | None:intergenic | 15.0% |
| !!! | AAAACGTAATATTGTTTTAT+TGG | + | chr1_1:4346783-4346802 | None:intergenic | 15.0% |
| !! | GAAACACATAATTTAAAAAA+AGG | + | chr1_1:4347035-4347054 | None:intergenic | 15.0% |
| !! | TTCTTTATAATAAGTATCAT+TGG | - | chr1_1:4347378-4347397 | Msa0002450:five_prime_UTR | 15.0% |
| !! | ATTAATAGATATAAATGAGA+GGG | + | chr1_1:4348144-4348163 | None:intergenic | 15.0% |
| !! | ATTAATAGTTATACCAATTT+AGG | + | chr1_1:4348200-4348219 | None:intergenic | 15.0% |
| !! | GTGATAAATAGTTAAAAAAA+TGG | + | chr1_1:4348236-4348255 | None:intergenic | 15.0% |
| !!! | TGAAAATAATTTGTAGTAAA+TGG | + | chr1_1:4348678-4348697 | None:intergenic | 15.0% |
| !!! | TTTACTACAAATTATTTTCA+AGG | - | chr1_1:4348678-4348697 | Msa0002450:intron | 15.0% |
| !! | AATTATTATGAGTAAAAATG+TGG | + | chr1_1:4348964-4348983 | None:intergenic | 15.0% |
| !!! | CAGTTAATATTTTTATTTGT+GGG | + | chr1_1:4349451-4349470 | None:intergenic | 15.0% |
| !!! | ATTAATCACAATTTTTTTTC+TGG | - | chr1_1:4349669-4349688 | Msa0002450:intron | 15.0% |
| !! | ATTATTATTTCCATTTGAAT+CGG | + | chr1_1:4350090-4350109 | None:intergenic | 15.0% |
| !!! | GTTTTAATTCTTATCAAATT+TGG | + | chr1_1:4350188-4350207 | None:intergenic | 15.0% |
| !! | TGATAAGAATTAAAACTTTA+AGG | - | chr1_1:4350192-4350211 | Msa0002450:intron | 15.0% |
| !!! | TATCATTTTTTTTTTATTGG+TGG | - | chr1_1:4350634-4350653 | Msa0002450:intron | 15.0% |
| !! | TTTGTTTGTTTATTTGATAT+TGG | + | chr1_1:4351199-4351218 | None:intergenic | 15.0% |
| !!! | TTTTTTTATCTGTATTTGGA+TGG | - | chr1_1:4341687-4341706 | Msa0002450:intron | 20.0% |
| !!! | TTTTTTATCTGTATTTGGAT+GGG | - | chr1_1:4341688-4341707 | Msa0002450:intron | 20.0% |
| !!! | GTTTATATATTTTCGAGTTA+GGG | - | chr1_1:4341747-4341766 | Msa0002450:intron | 20.0% |
| !!! | AATGTCTCAATTTTTAGTAA+AGG | - | chr1_1:4342088-4342107 | Msa0002450:intron | 20.0% |
| !! | TAAATTTGTATTAATGTGGT+TGG | - | chr1_1:4342122-4342141 | Msa0002450:intron | 20.0% |
| !!! | TATTTTCATTTGTATCTCTT+TGG | - | chr1_1:4342558-4342577 | Msa0002450:exon | 20.0% |
| !!! | TTTTATGGACTAATAGAAAA+AGG | - | chr1_1:4342636-4342655 | Msa0002450:intron | 20.0% |
| !!! | TTTATGGACTAATAGAAAAA+GGG | - | chr1_1:4342637-4342656 | Msa0002450:intron | 20.0% |
| !! | AATATAGAGCTACATATATA+TGG | - | chr1_1:4342712-4342731 | Msa0002450:intron | 20.0% |
| !!! | CATTAATTTGATTTTTGAAG+TGG | + | chr1_1:4342779-4342798 | None:intergenic | 20.0% |
| !!! | CTGCTATTTCATATTATTAT+TGG | + | chr1_1:4343048-4343067 | None:intergenic | 20.0% |
| !! | CGGTTATATTTATTACTAAT+AGG | + | chr1_1:4343148-4343167 | None:intergenic | 20.0% |
| !! | TTTGTTCACAAAATTGAATT+TGG | - | chr1_1:4343230-4343249 | Msa0002450:intron | 20.0% |
| !!! | ACATAATTTCAATTTTCATC+AGG | + | chr1_1:4343767-4343786 | None:intergenic | 20.0% |
| !! | GAATAGTATTATTCATCATT+TGG | - | chr1_1:4343834-4343853 | Msa0002450:intron | 20.0% |
| !! | TAACATTTACAAATGATGTT+GGG | + | chr1_1:4343865-4343884 | None:intergenic | 20.0% |
| !! | ATTTGTAAATGTTACATGTT+GGG | - | chr1_1:4343871-4343890 | Msa0002450:intron | 20.0% |
| !!! | ACATTTTAGAAGTATATACA+TGG | + | chr1_1:4343902-4343921 | None:intergenic | 20.0% |
| !! | ATAGTTTATTCTATGACAAT+TGG | + | chr1_1:4343947-4343966 | None:intergenic | 20.0% |
| !! | AGATACAATAAAACAGTAAA+AGG | + | chr1_1:4344013-4344032 | None:intergenic | 20.0% |
| !! | TTATCTAATAAGAGAAAAAG+AGG | + | chr1_1:4344223-4344242 | None:intergenic | 20.0% |
| !!! | TTTCTCAATTCTTTTAGAAA+GGG | + | chr1_1:4344256-4344275 | None:intergenic | 20.0% |
| !! | AATATGTTTAAAGAATGCAT+AGG | - | chr1_1:4344299-4344318 | Msa0002450:intron | 20.0% |
| !! | ATATGTTTAAAGAATGCATA+GGG | - | chr1_1:4344300-4344319 | Msa0002450:intron | 20.0% |
| !! | TATGGAAAAAAGACTTTATT+AGG | + | chr1_1:4344335-4344354 | None:intergenic | 20.0% |
| !!! | CTTGTTATAATATCTTAATG+AGG | + | chr1_1:4344484-4344503 | None:intergenic | 20.0% |
| !! | CTCATTAAGATATTATAACA+AGG | - | chr1_1:4344482-4344501 | Msa0002450:intron | 20.0% |
| !!! | AGTTTTAAACCTAATTTCTT+GGG | - | chr1_1:4344706-4344725 | Msa0002450:intron | 20.0% |
| !!! | AAAGATATGCATAAGTTTTA+GGG | + | chr1_1:4345119-4345138 | None:intergenic | 20.0% |
| !!! | TGCATAAGTATTTTTTGTTA+TGG | + | chr1_1:4345142-4345161 | None:intergenic | 20.0% |
| !! | AATACTTATGCATATCTTAT+TGG | - | chr1_1:4345150-4345169 | Msa0002450:intron | 20.0% |
| !! | TTATAAATCAAAGTAGAAGA+TGG | + | chr1_1:4345245-4345264 | None:intergenic | 20.0% |
| !! | TAAAAATAATAGTACCTTCA+TGG | + | chr1_1:4345711-4345730 | None:intergenic | 20.0% |
| !! | AAAACAGTATTCACTAAATA+AGG | + | chr1_1:4346356-4346375 | None:intergenic | 20.0% |
| !! | AATATATTGAAAGAATGCAT+AGG | - | chr1_1:4346637-4346656 | Msa0002450:intron | 20.0% |
| !! | ATATATTGAAAGAATGCATA+GGG | - | chr1_1:4346638-4346657 | Msa0002450:intron | 20.0% |
| !! | TAAGTTATAACATCTCAATA+AGG | + | chr1_1:4346826-4346845 | None:intergenic | 20.0% |
| !!! | ATACACTTTTAAGTGATAAT+GGG | - | chr1_1:4347062-4347081 | Msa0002450:intron | 20.0% |
| !! | ATATCTTATACTATTCGAAA+AGG | + | chr1_1:4347426-4347445 | None:intergenic | 20.0% |
| !! | AAACTATCCTTCATATAAAA+GGG | + | chr1_1:4347505-4347524 | None:intergenic | 20.0% |
| !! | AAAACTATCCTTCATATAAA+AGG | + | chr1_1:4347506-4347525 | None:intergenic | 20.0% |
| !! | AAACTATCCTTCATATAAAA+GGG | + | chr1_1:4347505-4347524 | None:intergenic | 20.0% |
| !! | AAAACTATCCTTCATATAAA+AGG | + | chr1_1:4347506-4347525 | None:intergenic | 20.0% |
| !! | AAACAAGTCTATATACAATA+AGG | + | chr1_1:4348040-4348059 | None:intergenic | 20.0% |
| !!! | TTATTGTATATAGACTTGTT+TGG | - | chr1_1:4348039-4348058 | Msa0002450:intron | 20.0% |
| !!! | TATTGTATATAGACTTGTTT+GGG | - | chr1_1:4348040-4348059 | Msa0002450:intron | 20.0% |
| !! | GATTAATAGATATAAATGAG+AGG | + | chr1_1:4348145-4348164 | None:intergenic | 20.0% |
| !!! | TTTTTTGATATCTCAAAGAT+TGG | + | chr1_1:4348328-4348347 | None:intergenic | 20.0% |
| !!! | GAATATTTTAAAATTGTCCA+TGG | + | chr1_1:4348386-4348405 | None:intergenic | 20.0% |
| !!! | ATTTATGTTGCTATTTGAAA+AGG | - | chr1_1:4348711-4348730 | Msa0002450:intron | 20.0% |
| !!! | TTATCCTTGTGTATTTTTTT+AGG | - | chr1_1:4348989-4349008 | Msa0002450:intron | 20.0% |
| !!! | TATCCTTGTGTATTTTTTTA+GGG | - | chr1_1:4348990-4349009 | Msa0002450:intron | 20.0% |
| !! | AAAAAAGAAAGAAAAGAGAA+GGG | + | chr1_1:4349175-4349194 | None:intergenic | 20.0% |
| !! | AAAAAAAGAAAGAAAAGAGA+AGG | + | chr1_1:4349176-4349195 | None:intergenic | 20.0% |
| !!! | TAAAGATAAGAGTTTTATAG+AGG | + | chr1_1:4349306-4349325 | None:intergenic | 20.0% |
| !!! | CCAGTTAATATTTTTATTTG+TGG | + | chr1_1:4349452-4349471 | None:intergenic | 20.0% |
| !! | CCACAAATAAAAATATTAAC+TGG | - | chr1_1:4349449-4349468 | Msa0002450:intron | 20.0% |
| !! | AATGTACATATAAAAGAAGA+TGG | + | chr1_1:4349631-4349650 | None:intergenic | 20.0% |
| !!! | ATATTTGTGATTTAGCATTT+TGG | - | chr1_1:4349888-4349907 | Msa0002450:five_prime_UTR | 20.0% |
| !! | AAAACAAAATTAACACTCAA+AGG | + | chr1_1:4350017-4350036 | None:intergenic | 20.0% |
| !! | TTATTATTTCCATTTGAATC+GGG | + | chr1_1:4350089-4350108 | None:intergenic | 20.0% |
| !! | ACATAATAATCAAATGCATA+AGG | + | chr1_1:4350223-4350242 | None:intergenic | 20.0% |
| !! | TTATGCATTTGATTATTATG+TGG | - | chr1_1:4350222-4350241 | Msa0002450:intron | 20.0% |
| !!! | CATTTTTGGATATAATTTAC+TGG | - | chr1_1:4350366-4350385 | Msa0002450:intron | 20.0% |
| !! | GTTAAATTATATTAACACCT+TGG | - | chr1_1:4350502-4350521 | Msa0002450:intron | 20.0% |
| !! | TGGATTACTTAATTATGATT+TGG | - | chr1_1:4350975-4350994 | Msa0002450:intron | 20.0% |
| !! | TTTAGTTATTTGTCAACAAA+GGG | + | chr1_1:4351234-4351253 | None:intergenic | 20.0% |
| !! | AGATACAATAAAACAGTAAA+AGG | + | chr1_1:4344013-4344032 | None:intergenic | 20.0% |
| ! | GTTAAATGAGAATGAATGTA+TGG | + | chr1_1:4341445-4341464 | None:intergenic | 25.0% |
| ! | ACTCGAAAATATATAAACGT+TGG | + | chr1_1:4341745-4341764 | None:intergenic | 25.0% |
| !!! | CGTTTATATATTTTCGAGTT+AGG | - | chr1_1:4341746-4341765 | Msa0002450:intron | 25.0% |
| !! | TTTTGAACATCTATGTATCT+TGG | - | chr1_1:4341946-4341965 | Msa0002450:intron | 25.0% |
| ! | AATCTTAAGTGTATGCTAAA+TGG | - | chr1_1:4342010-4342029 | Msa0002450:intron | 25.0% |
| ! | ATCTTAAGTGTATGCTAAAT+GGG | - | chr1_1:4342011-4342030 | Msa0002450:intron | 25.0% |
| ! | TACTAAAAATTGAGACATTG+AGG | + | chr1_1:4342087-4342106 | None:intergenic | 25.0% |
| ! | ATTAGATCAGTAAATTGACA+AGG | + | chr1_1:4342305-4342324 | None:intergenic | 25.0% |
| !!! | GAATTATTTTATAGCAGTAG+CGG | + | chr1_1:4342348-4342367 | None:intergenic | 25.0% |
| ! | TATCACGATAAAGTATGAAA+TGG | + | chr1_1:4342410-4342429 | None:intergenic | 25.0% |
| ! | ATTTGACAGAAAAATAAAGC+AGG | - | chr1_1:4342681-4342700 | Msa0002450:intron | 25.0% |
| !! | ATGTAGCTCTATATTTAACA+TGG | + | chr1_1:4342707-4342726 | None:intergenic | 25.0% |
| ! | ATATGGAAATAATTCTGTCA+TGG | - | chr1_1:4342729-4342748 | Msa0002450:intron | 25.0% |
| !! | TCTACATCATTTGTATTGAT+TGG | + | chr1_1:4342928-4342947 | None:intergenic | 25.0% |
| !!! | TTAAAGCGAGTTGATTTAAA+TGG | + | chr1_1:4343117-4343136 | None:intergenic | 25.0% |
| ! | ATTTAATGACCTAACATTAG+TGG | - | chr1_1:4343181-4343200 | Msa0002450:intron | 25.0% |
| !!! | TATGTGAAGTTATTTTACGA+TGG | - | chr1_1:4343646-4343665 | Msa0002450:intron | 25.0% |
| ! | AACAATGAGGTCTTAAAAAT+AGG | + | chr1_1:4343676-4343695 | None:intergenic | 25.0% |
| ! | AATAAAAGTGATGAACAATG+AGG | + | chr1_1:4343689-4343708 | None:intergenic | 25.0% |
| !!! | ACTTTTATTTGCTACATGTT+GGG | - | chr1_1:4343700-4343719 | Msa0002450:intron | 25.0% |
| !!! | ACATTTTAGAAGTATAGACT+TGG | + | chr1_1:4343731-4343750 | None:intergenic | 25.0% |
| ! | TATTCGTATCTAGATTTCAT+CGG | + | chr1_1:4343819-4343838 | None:intergenic | 25.0% |
| ! | GTAACATTTACAAATGATGT+TGG | + | chr1_1:4343866-4343885 | None:intergenic | 25.0% |
| ! | CATTTGTAAATGTTACATGT+TGG | - | chr1_1:4343870-4343889 | Msa0002450:intron | 25.0% |
| !! | GATTGTTTGTTTGTTAGTAT+TGG | - | chr1_1:4344092-4344111 | Msa0002450:intron | 25.0% |
| !!! | AAAGAGGTATTAGATAGAAA+AGG | + | chr1_1:4344207-4344226 | None:intergenic | 25.0% |
| !!! | CTTTCTCAATTCTTTTAGAA+AGG | + | chr1_1:4344257-4344276 | None:intergenic | 25.0% |
| !!! | CTTCGAAATTTTAAAAAGCT+AGG | - | chr1_1:4344369-4344388 | Msa0002450:intron | 25.0% |
| ! | GTTATAATATCTTAATGAGG+AGG | + | chr1_1:4344481-4344500 | None:intergenic | 25.0% |
| !!! | GCAATTGTTGTTTTTAGTTT+TGG | - | chr1_1:4344581-4344600 | Msa0002450:intron | 25.0% |
| ! | AATAAATTCTAATGCAAAGC+TGG | + | chr1_1:4344629-4344648 | None:intergenic | 25.0% |
| !! | CAAGAAATTAGGTTTAAAAC+TGG | + | chr1_1:4344707-4344726 | None:intergenic | 25.0% |
| !!! | CAGTTTTAAACCTAATTTCT+TGG | - | chr1_1:4344705-4344724 | Msa0002450:intron | 25.0% |
| ! | AAATTCAAACCCAAGAAATT+AGG | + | chr1_1:4344718-4344737 | None:intergenic | 25.0% |
| !! | TTCTGCTATACATCATTTTA+TGG | + | chr1_1:4344769-4344788 | None:intergenic | 25.0% |
| ! | ATAAAGAGGTTAATCTGTAT+TGG | - | chr1_1:4344788-4344807 | Msa0002450:intron | 25.0% |
| ! | ATATTTCATCAGTTGTATTC+TGG | + | chr1_1:4344965-4344984 | None:intergenic | 25.0% |
| ! | AACTGATGAAATATGATACT+TGG | - | chr1_1:4344971-4344990 | Msa0002450:intron | 25.0% |
| !! | GAAAGATATGCATAAGTTTT+AGG | + | chr1_1:4345120-4345139 | None:intergenic | 25.0% |
| ! | AAGCAAGATATACAAGAAAT+AGG | + | chr1_1:4345286-4345305 | None:intergenic | 25.0% |
| !!! | ATAACTTTCAAGTATTGATC+TGG | - | chr1_1:4345400-4345419 | Msa0002450:intron | 25.0% |
| ! | AATACTTCAAAGAGTTCTTT+AGG | + | chr1_1:4345438-4345457 | None:intergenic | 25.0% |
| ! | AATTCATCATCAAAACCATT+TGG | - | chr1_1:4345535-4345554 | Msa0002450:intron | 25.0% |
| ! | TTGAGAGTTTCTTCTAAATT+AGG | - | chr1_1:4345889-4345908 | Msa0002450:intron | 25.0% |
| !! | GGAACTTTTTATATTAGTGT+TGG | + | chr1_1:4346214-4346233 | None:intergenic | 25.0% |
| ! | TCTTATGACAATTTGCATAA+GGG | + | chr1_1:4346282-4346301 | None:intergenic | 25.0% |
| ! | ATCTTATGACAATTTGCATA+AGG | + | chr1_1:4346283-4346302 | None:intergenic | 25.0% |
| !!! | TTTTCTTTGTTTGTTAGCAA+TGG | - | chr1_1:4346441-4346460 | Msa0002450:intron | 25.0% |
| !! | TTTCTTTGTTTGTTAGCAAT+GGG | - | chr1_1:4346442-4346461 | Msa0002450:intron | 25.0% |
| ! | TATATTGAAAGAATGCATAG+GGG | - | chr1_1:4346639-4346658 | Msa0002450:intron | 25.0% |
| ! | AAAAAGACTTCAATAGGAAA+CGG | + | chr1_1:4346670-4346689 | None:intergenic | 25.0% |
| ! | TATGTTGTATAGTAAGTATG+TGG | + | chr1_1:4346693-4346712 | None:intergenic | 25.0% |
| !!! | CATACACTTTTAAGTGATAA+TGG | - | chr1_1:4347061-4347080 | Msa0002450:intron | 25.0% |
| !!! | ACGAAATAAACATGTTTTGA+AGG | - | chr1_1:4347178-4347197 | Msa0002450:intron | 25.0% |
| ! | ATCTACATATAGCATAGTAA+TGG | - | chr1_1:4347250-4347269 | Msa0002450:intron | 25.0% |
| !! | TGATCTTTGTATTTAGTTCA+AGG | - | chr1_1:4347351-4347370 | Msa0002450:five_prime_UTR | 25.0% |
| ! | TCACCAAATTTATCAAGATT+TGG | - | chr1_1:4347452-4347471 | Msa0002450:intron | 25.0% |
| ! | CACCAAATTTATCAAGATTT+GGG | - | chr1_1:4347453-4347472 | Msa0002450:intron | 25.0% |
| ! | TACCCAAATCTTGATAAATT+TGG | + | chr1_1:4347458-4347477 | None:intergenic | 25.0% |
| ! | CCAAGAAGAATAGATAATAA+CGG | + | chr1_1:4347601-4347620 | None:intergenic | 25.0% |
| ! | CGTTATTATCTATTCTTCTT+GGG | - | chr1_1:4347599-4347618 | Msa0002450:intron | 25.0% |
| ! | GTTATTATCTATTCTTCTTG+GGG | - | chr1_1:4347600-4347619 | Msa0002450:intron | 25.0% |
| ! | TGAAATATCACATCAAATTC+TGG | + | chr1_1:4347694-4347713 | None:intergenic | 25.0% |
| ! | GGTCAAACATATGATTTATT+AGG | + | chr1_1:4347807-4347826 | None:intergenic | 25.0% |
| !!! | CTCTAAGTTTGCTATATATA+TGG | + | chr1_1:4347828-4347847 | None:intergenic | 25.0% |
| !!! | AATTGCCATTTATCGTATTT+TGG | + | chr1_1:4347888-4347907 | None:intergenic | 25.0% |
| ! | TCTATATACAATAAGGAGAA+TGG | + | chr1_1:4348033-4348052 | None:intergenic | 25.0% |
| ! | TGATACTTCAAAAATCTTGA+TGG | - | chr1_1:4348358-4348377 | Msa0002450:intron | 25.0% |
| ! | TGAGTGCATATAAATCTAAT+GGG | + | chr1_1:4348494-4348513 | None:intergenic | 25.0% |
| ! | TTGAGTGCATATAAATCTAA+TGG | + | chr1_1:4348495-4348514 | None:intergenic | 25.0% |
| ! | CTACTTAGAAATAACTGTAT+TGG | + | chr1_1:4348758-4348777 | None:intergenic | 25.0% |
| !!! | ATCCTTGTGTATTTTTTTAG+GGG | - | chr1_1:4348991-4349010 | Msa0002450:intron | 25.0% |
| ! | AATGACATAAAGATAAGCAT+TGG | + | chr1_1:4349097-4349116 | None:intergenic | 25.0% |
| ! | TCCATAGTGTTAATATTATG+TGG | - | chr1_1:4349118-4349137 | Msa0002450:intron | 25.0% |
| ! | ACCACATAATATTAACACTA+TGG | + | chr1_1:4349122-4349141 | None:intergenic | 25.0% |
| !!! | GGTTTTATTTTAGTATGAAG+CGG | + | chr1_1:4349261-4349280 | None:intergenic | 25.0% |
| !!! | ATTTTTTAGACTGTCATTTC+TGG | - | chr1_1:4349347-4349366 | Msa0002450:intron | 25.0% |
| !! | TTTTATTGTGAATATCAAGG+AGG | + | chr1_1:4349428-4349447 | None:intergenic | 25.0% |
| !!! | GTTCTTTTTCACTATTTTTG+AGG | - | chr1_1:4349520-4349539 | Msa0002450:intron | 25.0% |
| !!! | CTATATTTTTACAAGAAACG+AGG | + | chr1_1:4349599-4349618 | None:intergenic | 25.0% |
| ! | ATGCTAAATCACAAATATAG+AGG | + | chr1_1:4349886-4349905 | None:intergenic | 25.0% |
| ! | TTCTAATGACATGTTAATGA+AGG | - | chr1_1:4349979-4349998 | Msa0002450:intron | 25.0% |
| ! | AAGATGATAATCTGATCTAA+AGG | - | chr1_1:4350113-4350132 | Msa0002450:intron | 25.0% |
| !! | GTAAATCAACGATTTTTGAA+TGG | - | chr1_1:4350283-4350302 | Msa0002450:intron | 25.0% |
| !! | GTTTAGAAAAGTTGCATTTT+TGG | - | chr1_1:4350352-4350371 | Msa0002450:intron | 25.0% |
| !!! | TTTTTTATGCAATAAGTCCA+AGG | + | chr1_1:4350522-4350541 | None:intergenic | 25.0% |
| ! | TTCAAACATACTTTATGACT+TGG | - | chr1_1:4350584-4350603 | Msa0002450:intron | 25.0% |
| !! | AAAATGTTAATAGAAAGTGC+AGG | + | chr1_1:4350750-4350769 | None:intergenic | 25.0% |
| !! | CAATTTCTAACTGATTCAAA+TGG | - | chr1_1:4350925-4350944 | Msa0002450:intron | 25.0% |
| ! | CTTTAGTTATTTGTCAACAA+AGG | + | chr1_1:4351235-4351254 | None:intergenic | 25.0% |
| ! | GCGAAGAAACATAATTAAAA+TGG | + | chr1_1:4351590-4351609 | None:intergenic | 25.0% |
| !! | ATGACAATTTTTGTATCATC+TGG | - | chr1_1:4351701-4351720 | Msa0002450:intron | 25.0% |
| !! | AAAGAAAAAGGTATCCGAAA+AGG | + | chr1_1:4341407-4341426 | None:intergenic | 30.0% |
| TAGGAAGAAGAGAAAGAAAA+AGG | + | chr1_1:4341419-4341438 | None:intergenic | 30.0% | |
| TCTATATGAGAGAAGAACAA+TGG | + | chr1_1:4341568-4341587 | None:intergenic | 30.0% | |
| GTTGATGTTTCTTCAAAAGA+CGG | - | chr1_1:4341830-4341849 | Msa0002450:exon | 30.0% | |
| TAAAAATTGAGACATTGAGG+TGG | + | chr1_1:4342084-4342103 | None:intergenic | 30.0% | |
| TAATGTGGTTGGATATGTAT+TGG | - | chr1_1:4342133-4342152 | Msa0002450:intron | 30.0% | |
| ! | GTAAATTGACAAGGTTAGTT+AGG | + | chr1_1:4342296-4342315 | None:intergenic | 30.0% |
| GATATCAAACATAATACTCC+AGG | + | chr1_1:4342453-4342472 | None:intergenic | 30.0% | |
| !!! | TAGTTTTGACAAAATACTCC+AGG | + | chr1_1:4342517-4342536 | None:intergenic | 30.0% |
| ACAAATTGACTGTGTCAAAT+TGG | - | chr1_1:4342862-4342881 | Msa0002450:intron | 30.0% | |
| ATTGGTCGAGAATAAGATTA+TGG | - | chr1_1:4342880-4342899 | Msa0002450:intron | 30.0% | |
| TTGGTCGAGAATAAGATTAT+GGG | - | chr1_1:4342881-4342900 | Msa0002450:intron | 30.0% | |
| GGCAAATAGTAACATATCAA+AGG | - | chr1_1:4342902-4342921 | Msa0002450:intron | 30.0% | |
| ATTGGTATTGCCTAAAAATG+CGG | + | chr1_1:4343030-4343049 | None:intergenic | 30.0% | |
| ATAGATTGCAATTTGCAAGT+CGG | + | chr1_1:4343073-4343092 | None:intergenic | 30.0% | |
| !! | GTTCACAATCAACTGATTTT+GGG | + | chr1_1:4343300-4343319 | None:intergenic | 30.0% |
| !! | TGTTCACAATCAACTGATTT+TGG | + | chr1_1:4343301-4343320 | None:intergenic | 30.0% |
| GTTGATTGTGAACATGAATA+TGG | - | chr1_1:4343307-4343326 | Msa0002450:intron | 30.0% | |
| TTTCAATTCCATACTGATCA+AGG | - | chr1_1:4343384-4343403 | Msa0002450:intron | 30.0% | |
| TAAATTGATAGAGACTGTCA+TGG | + | chr1_1:4343596-4343615 | None:intergenic | 30.0% | |
| !! | CACTTTTATTTGCTACATGT+TGG | - | chr1_1:4343699-4343718 | Msa0002450:intron | 30.0% |
| TTCTATGACAATTGGCATAA+GGG | + | chr1_1:4343939-4343958 | None:intergenic | 30.0% | |
| ATTCTATGACAATTGGCATA+AGG | + | chr1_1:4343940-4343959 | None:intergenic | 30.0% | |
| CTACTCATCAAGCTTAATAA+AGG | + | chr1_1:4343970-4343989 | None:intergenic | 30.0% | |
| ! | TTGTTTGTTAGTATTGGATG+TGG | - | chr1_1:4344098-4344117 | Msa0002450:intron | 30.0% |
| GTTAGACATGATGAAAACAA+AGG | - | chr1_1:4344169-4344188 | Msa0002450:intron | 30.0% | |
| !! | TCAATTCTTTTAGAAAGGGT+TGG | + | chr1_1:4344252-4344271 | None:intergenic | 30.0% |
| GAAGTTGTATAGCAAGTATA+TGG | + | chr1_1:4344353-4344372 | None:intergenic | 30.0% | |
| TGATGTATAGCAGAATAAAG+AGG | - | chr1_1:4344774-4344793 | Msa0002450:intron | 30.0% | |
| GTTAATCTGTATTGGATAGT+TGG | - | chr1_1:4344796-4344815 | Msa0002450:intron | 30.0% | |
| AGTTACATTTGAGCATTCAT+AGG | - | chr1_1:4345026-4345045 | Msa0002450:intron | 30.0% | |
| AACTAACAGACAGAACATAT+TGG | - | chr1_1:4345631-4345650 | Msa0002450:five_prime_UTR | 30.0% | |
| ACATATTGGACTTCAATTCT+TGG | - | chr1_1:4345645-4345664 | Msa0002450:five_prime_UTR | 30.0% | |
| !!! | GGTTTCAATTTTTAGTGAGT+TGG | + | chr1_1:4345796-4345815 | None:intergenic | 30.0% |
| !!! | CTTGGTTGTTTTTTCACTAT+TGG | + | chr1_1:4345817-4345836 | None:intergenic | 30.0% |
| TGTAAGCAATATAGACTACT+TGG | + | chr1_1:4345835-4345854 | None:intergenic | 30.0% | |
| CACATCTATTAGAAATGCTT+AGG | + | chr1_1:4346127-4346146 | None:intergenic | 30.0% | |
| AGCATTTCTAATAGATGTGA+TGG | - | chr1_1:4346128-4346147 | Msa0002450:intron | 30.0% | |
| GCATTTCTAATAGATGTGAT+GGG | - | chr1_1:4346129-4346148 | Msa0002450:intron | 30.0% | |
| ! | TTGACAACTTTTGTATCTTC+TGG | - | chr1_1:4346188-4346207 | Msa0002450:intron | 30.0% |
| TTGTCTAACAACAGAAAAAG+AGG | + | chr1_1:4346572-4346591 | None:intergenic | 30.0% | |
| ATGTGGAAAAAGACTTCAAT+AGG | + | chr1_1:4346676-4346695 | None:intergenic | 30.0% | |
| GTTATAACATCTCAATAAGG+AGG | + | chr1_1:4346823-4346842 | None:intergenic | 30.0% | |
| TTTACCTTTGACTATGTGAT+AGG | - | chr1_1:4346960-4346979 | Msa0002450:intron | 30.0% | |
| AATTTAAAAAAAGGGCAACC+TGG | + | chr1_1:4347026-4347045 | None:intergenic | 30.0% | |
| ! | CACTTAAAAGTGTATGAGAA+AGG | + | chr1_1:4347057-4347076 | None:intergenic | 30.0% |
| TACAGCATCAACATTGTATT+TGG | - | chr1_1:4347092-4347111 | Msa0002450:intron | 30.0% | |
| ACAGCATCAACATTGTATTT+GGG | - | chr1_1:4347093-4347112 | Msa0002450:intron | 30.0% | |
| ACATATAGCATAGTAATGGT+AGG | - | chr1_1:4347254-4347273 | Msa0002450:intron | 30.0% | |
| CCGTTATTATCTATTCTTCT+TGG | - | chr1_1:4347598-4347617 | Msa0002450:intron | 30.0% | |
| GACTAATTATCAAGTAACCT+AGG | + | chr1_1:4347645-4347664 | None:intergenic | 30.0% | |
| TATTTCAGTGACGTATCAAA+TGG | - | chr1_1:4347707-4347726 | Msa0002450:five_prime_UTR | 30.0% | |
| AGTAGCCAAAATACGATAAA+TGG | - | chr1_1:4347880-4347899 | Msa0002450:intron | 30.0% | |
| GGGAAATTAAAATCACTTCA+TGG | - | chr1_1:4347980-4347999 | Msa0002450:intron | 30.0% | |
| CTTCATGGATTTACTAATCT+TGG | - | chr1_1:4347995-4348014 | Msa0002450:intron | 30.0% | |
| TATACAATAAGGAGAATGGA+GGG | + | chr1_1:4348029-4348048 | None:intergenic | 30.0% | |
| ATATACAATAAGGAGAATGG+AGG | + | chr1_1:4348030-4348049 | None:intergenic | 30.0% | |
| ! | GACTTGTTTGGGAAATTTAA+AGG | - | chr1_1:4348051-4348070 | Msa0002450:intron | 30.0% |
| AATATTAATAGTCCGAGTCT+TGG | + | chr1_1:4348103-4348122 | None:intergenic | 30.0% | |
| CTAAATTAGCTCACCTAAAT+TGG | - | chr1_1:4348184-4348203 | Msa0002450:intron | 30.0% | |
| AAGTCATACTTGATTGAACT+CGG | + | chr1_1:4348290-4348309 | None:intergenic | 30.0% | |
| TACCCCTAAAAAAATACACA+AGG | + | chr1_1:4348996-4349015 | None:intergenic | 30.0% | |
| TGATGAAAAAAGAAGAGAGA+AGG | + | chr1_1:4349231-4349250 | None:intergenic | 30.0% | |
| !!! | TTATTTTAGTATGAAGCGGT+CGG | + | chr1_1:4349257-4349276 | None:intergenic | 30.0% |
| !! | AGAGTTTTATAGAGGAGAAA+GGG | + | chr1_1:4349298-4349317 | None:intergenic | 30.0% |
| !! | AAGAGTTTTATAGAGGAGAA+AGG | + | chr1_1:4349299-4349318 | None:intergenic | 30.0% |
| !!! | GGGTTTTATTGTGAATATCA+AGG | + | chr1_1:4349431-4349450 | None:intergenic | 30.0% |
| ! | ATTTGAAGGAATGTTGTTTG+AGG | - | chr1_1:4349490-4349509 | Msa0002450:intron | 30.0% |
| ! | GTTTTATCCGATGCAAAAAT+TGG | + | chr1_1:4349551-4349570 | None:intergenic | 30.0% |
| GAGTATCAACAAAGACAATA+TGG | + | chr1_1:4350062-4350081 | None:intergenic | 30.0% | |
| TTGGATATAATTTACTGGTG+TGG | - | chr1_1:4350371-4350390 | Msa0002450:intron | 30.0% | |
| TGGATATAATTTACTGGTGT+GGG | - | chr1_1:4350372-4350391 | Msa0002450:intron | 30.0% | |
| TGGTGGTAAATAAGTCTAAA+TGG | - | chr1_1:4350651-4350670 | Msa0002450:intron | 30.0% | |
| ! | CTGATAACTTTGTTTCTTCT+TGG | - | chr1_1:4350781-4350800 | Msa0002450:intron | 30.0% |
| !! | ACTTTGTTTCTTCTTGGTTT+TGG | - | chr1_1:4350787-4350806 | Msa0002450:intron | 30.0% |
| !!! | TTTCTTCTTGGTTTTGGATT+AGG | - | chr1_1:4350793-4350812 | Msa0002450:intron | 30.0% |
| !!! | TTCTTCTTGGTTTTGGATTA+GGG | - | chr1_1:4350794-4350813 | Msa0002450:intron | 30.0% |
| ATTTACGAACTTCTTCACTA+TGG | - | chr1_1:4350950-4350969 | Msa0002450:intron | 30.0% | |
| !! | TTGATATTGGTGCTAAATTC+AGG | + | chr1_1:4351186-4351205 | None:intergenic | 30.0% |
| TTTGTCAACAAAGGGAAATT+TGG | + | chr1_1:4351226-4351245 | None:intergenic | 30.0% | |
| GATGATTAATTCGATCAGTT+TGG | - | chr1_1:4351263-4351282 | Msa0002450:intron | 30.0% | |
| ! | ATCAGTTTGGTAATATCTGT+TGG | - | chr1_1:4351276-4351295 | Msa0002450:intron | 30.0% |
| ! | TCAGTTTGGTAATATCTGTT+GGG | - | chr1_1:4351277-4351296 | Msa0002450:intron | 30.0% |
| ACTTATCAAGAACATAAAGC+AGG | + | chr1_1:4351331-4351350 | None:intergenic | 30.0% | |
| ! | ATGTAAGCATTCCTTTTAAG+AGG | + | chr1_1:4351416-4351435 | None:intergenic | 30.0% |
| ! | TTTTGCAGTTAATATCCTTG+AGG | - | chr1_1:4351508-4351527 | Msa0002450:five_prime_UTR | 30.0% |
| TTTGCAGTTAATATCCTTGA+GGG | - | chr1_1:4351509-4351528 | Msa0002450:five_prime_UTR | 30.0% | |
| ! | CACATCTATTTGAAATGCTT+GGG | + | chr1_1:4351643-4351662 | None:intergenic | 30.0% |
| ! | TCACATCTATTTGAAATGCT+TGG | + | chr1_1:4351644-4351663 | None:intergenic | 30.0% |
| AGCATTTCAAATAGATGTGA+TGG | - | chr1_1:4351644-4351663 | Msa0002450:intron | 30.0% | |
| GCATTTCAAATAGATGTGAT+GGG | - | chr1_1:4351645-4351664 | Msa0002450:intron | 30.0% | |
| TTCTATGACAATTGGCATAA+GGG | + | chr1_1:4343939-4343958 | None:intergenic | 30.0% | |
| ATTCTATGACAATTGGCATA+AGG | + | chr1_1:4343940-4343959 | None:intergenic | 30.0% | |
| AGAGCTTATTCTATGACAAT+TGG | + | chr1_1:4351803-4351822 | None:intergenic | 30.0% | |
| ! | TATCTGATGTGGTTTAGTTT+GGG | - | chr1_1:4351914-4351933 | Msa0002450:five_prime_UTR | 30.0% |
| GTTAGACATGATGAAAACAA+AGG | - | chr1_1:4344169-4344188 | Msa0002450:intron | 30.0% | |
| GTGATTGTGTTCTTAAATGG+AGG | + | chr1_1:4341543-4341562 | None:intergenic | 35.0% | |
| GTGGTGATTGTGTTCTTAAA+TGG | + | chr1_1:4341546-4341565 | None:intergenic | 35.0% | |
| ATATGAGAGAAGAACAATGG+TGG | + | chr1_1:4341565-4341584 | None:intergenic | 35.0% | |
| ! | CTCTCATATAGATTTTGCGA+TGG | - | chr1_1:4341576-4341595 | Msa0002450:intron | 35.0% |
| ! | TCATATAGATTTTGCGATGG+TGG | - | chr1_1:4341579-4341598 | Msa0002450:intron | 35.0% |
| GGAAATAATTCTGTCATGGA+AGG | - | chr1_1:4342733-4342752 | Msa0002450:intron | 35.0% | |
| TGAAGTGGTAATCATCAAAC+AGG | + | chr1_1:4342764-4342783 | None:intergenic | 35.0% | |
| AATATGCAATAGCAACTTGC+AGG | - | chr1_1:4343003-4343022 | Msa0002450:intron | 35.0% | |
| GACTTGCAAATTGCAATCTA+TGG | - | chr1_1:4343072-4343091 | Msa0002450:intron | 35.0% | |
| AAGTAGCTTCCACTAATGTT+AGG | + | chr1_1:4343193-4343212 | None:intergenic | 35.0% | |
| GATAACGTAAACACATGACA+AGG | + | chr1_1:4343261-4343280 | None:intergenic | 35.0% | |
| TGTTTACGTTATCGATGTCA+TGG | - | chr1_1:4343268-4343287 | Msa0002450:intron | 35.0% | |
| GTATTTAACCTTCTGCTTTC+TGG | - | chr1_1:4343517-4343536 | Msa0002450:intron | 35.0% | |
| TAGATTTCATCGGATGCATA+AGG | + | chr1_1:4343809-4343828 | None:intergenic | 35.0% | |
| TATTGGATGTGGTTGAGTTT+GGG | - | chr1_1:4344109-4344128 | Msa0002450:intron | 35.0% | |
| ! | GTGACTTGTGAGCATTTAAA+AGG | - | chr1_1:4344399-4344418 | Msa0002450:intron | 35.0% |
| TCCAACTGCAAAAAATGAAG+AGG | - | chr1_1:4344508-4344527 | Msa0002450:intron | 35.0% | |
| !!! | TCCTCTTCATTTTTTGCAGT+TGG | + | chr1_1:4344512-4344531 | None:intergenic | 35.0% |
| TTGAAGGTTTGCATATGTCT+GGG | + | chr1_1:4344840-4344859 | None:intergenic | 35.0% | |
| TTTGAAGGTTTGCATATGTC+TGG | + | chr1_1:4344841-4344860 | None:intergenic | 35.0% | |
| CATTTGAGCATTCATAGGTT+CGG | - | chr1_1:4345031-4345050 | Msa0002450:intron | 35.0% | |
| CGAATGCATTCTTACTCTAT+TGG | - | chr1_1:4345322-4345341 | Msa0002450:intron | 35.0% | |
| TGCATTCTTACTCTATTGGT+TGG | - | chr1_1:4345326-4345345 | Msa0002450:intron | 35.0% | |
| !! | TATTGGTTGGCTTATGATAC+TGG | - | chr1_1:4345339-4345358 | Msa0002450:intron | 35.0% |
| !! | ATTGGTTGGCTTATGATACT+GGG | - | chr1_1:4345340-4345359 | Msa0002450:intron | 35.0% |
| !! | ACTTTCAAGTATTGATCTGG+AGG | - | chr1_1:4345403-4345422 | Msa0002450:intron | 35.0% |
| !! | TCTTTGAAGTATTGATCTGC+AGG | - | chr1_1:4345445-4345464 | Msa0002450:intron | 35.0% |
| TCATCATCAAAACCATTTGG+TGG | - | chr1_1:4345538-4345557 | Msa0002450:intron | 35.0% | |
| CATCATCAAAACCATTTGGT+GGG | - | chr1_1:4345539-4345558 | Msa0002450:intron | 35.0% | |
| CATATACGCTATACTACCTT+CGG | + | chr1_1:4345599-4345618 | None:intergenic | 35.0% | |
| TATTGGACTTCAATTCTTGG+AGG | - | chr1_1:4345648-4345667 | Msa0002450:five_prime_UTR | 35.0% | |
| GGAGGAAATTCACAAAGATA+AGG | - | chr1_1:4345666-4345685 | Msa0002450:intron | 35.0% | |
| !!! | CTGATTGCTCTTGTTTTTTG+TGG | - | chr1_1:4345954-4345973 | Msa0002450:intron | 35.0% |
| TGGTTAATATGCACATTTCC+AGG | - | chr1_1:4345974-4345993 | Msa0002450:intron | 35.0% | |
| GGTTAATATGCACATTTCCA+GGG | - | chr1_1:4345975-4345994 | Msa0002450:intron | 35.0% | |
| TACAGTATGTGAATCTAGCT+GGG | + | chr1_1:4346040-4346059 | None:intergenic | 35.0% | |
| ! | AATAGATGTGATGGGACAAA+AGG | - | chr1_1:4346137-4346156 | Msa0002450:intron | 35.0% |
| CAAAAGGCTTATTAGCATAG+TGG | - | chr1_1:4346153-4346172 | Msa0002450:intron | 35.0% | |
| ! | TGTTTGTTAGCAATGGGATA+TGG | - | chr1_1:4346448-4346467 | Msa0002450:intron | 35.0% |
| AATGGGATATGGTTGAGTTT+GGG | - | chr1_1:4346459-4346478 | Msa0002450:intron | 35.0% | |
| ! | GTGACTTGTGAGCATTTAAA+TGG | - | chr1_1:4344399-4344418 | Msa0002450:intron | 35.0% |
| ATGCAACTGCAAAAATGAAG+AGG | - | chr1_1:4346893-4346912 | Msa0002450:five_prime_UTR | 35.0% | |
| AGAGTCGAGTATTATAAGGT+GGG | - | chr1_1:4347202-4347221 | Msa0002450:intron | 35.0% | |
| ! | TTAGTATATGCCTTGTTCCA+TGG | - | chr1_1:4347479-4347498 | Msa0002450:intron | 35.0% |
| ! | TTAGTATATGCCTTGTTCCA+TGG | - | chr1_1:4347479-4347498 | Msa0002450:intron | 35.0% |
| ATTATCTATTCTTCTTGGGG+TGG | - | chr1_1:4347603-4347622 | Msa0002450:intron | 35.0% | |
| ! | CTATGATTTCCTCTTTTGAC+AGG | - | chr1_1:4347763-4347782 | Msa0002450:five_prime_UTR | 35.0% |
| CTCAATAAAGACAAGCAGTA+AGG | - | chr1_1:4347955-4347974 | Msa0002450:intron | 35.0% | |
| ATAAAGACAAGCAGTAAGGA+AGG | - | chr1_1:4347959-4347978 | Msa0002450:intron | 35.0% | |
| TAAAGACAAGCAGTAAGGAA+GGG | - | chr1_1:4347960-4347979 | Msa0002450:intron | 35.0% | |
| CATGGATTTACTAATCTTGG+AGG | - | chr1_1:4347998-4348017 | Msa0002450:intron | 35.0% | |
| ATACAATAAGGAGAATGGAG+GGG | + | chr1_1:4348028-4348047 | None:intergenic | 35.0% | |
| !! | TTAAAGGACTCAGAGGTATT+TGG | - | chr1_1:4348067-4348086 | Msa0002450:intron | 35.0% |
| ! | TGGTACTAGCTTAAACAAAG+AGG | + | chr1_1:4348658-4348677 | None:intergenic | 35.0% |
| ! | TTCTTGATGAAAAGCACATG+TGG | - | chr1_1:4349035-4349054 | Msa0002450:intron | 35.0% |
| AGAAAAGAGAAGGGTAAGAA+GGG | + | chr1_1:4349166-4349185 | None:intergenic | 35.0% | |
| AAGAAAAGAGAAGGGTAAGA+AGG | + | chr1_1:4349167-4349186 | None:intergenic | 35.0% | |
| TGAAAAAAGAAGAGAGAAGG+TGG | + | chr1_1:4349228-4349247 | None:intergenic | 35.0% | |
| !! | AGTTTTATAGAGGAGAAAGG+GGG | + | chr1_1:4349296-4349315 | None:intergenic | 35.0% |
| !! | GAGTTTTATAGAGGAGAAAG+GGG | + | chr1_1:4349297-4349316 | None:intergenic | 35.0% |
| TTGTAACTTGGTTTCGTCAA+TGG | + | chr1_1:4349398-4349417 | None:intergenic | 35.0% | |
| ! | TTTTCACCTCAGCTATTTGA+AGG | - | chr1_1:4349476-4349495 | Msa0002450:intron | 35.0% |
| AACATTCCTTCAAATAGCTG+AGG | + | chr1_1:4349485-4349504 | None:intergenic | 35.0% | |
| ! | GGATCTACCAATTTTTGCAT+CGG | - | chr1_1:4349541-4349560 | Msa0002450:intron | 35.0% |
| TACTCATATCCCGATTCAAA+TGG | - | chr1_1:4350077-4350096 | Msa0002450:intron | 35.0% | |
| CTCATCATAACATGGGAAAT+TGG | + | chr1_1:4350149-4350168 | None:intergenic | 35.0% | |
| AATGGCTCTCATCATAACAT+GGG | + | chr1_1:4350156-4350175 | None:intergenic | 35.0% | |
| TAATGGCTCTCATCATAACA+TGG | + | chr1_1:4350157-4350176 | None:intergenic | 35.0% | |
| ATTCTTATCAAATTTGGCCG+AGG | + | chr1_1:4350182-4350201 | None:intergenic | 35.0% | |
| ! | ATGCTTTCAAGTACCTTTCT+TGG | - | chr1_1:4350248-4350267 | Msa0002450:intron | 35.0% |
| ! | AAGTACCTTTCTTGGACTTT+TGG | - | chr1_1:4350256-4350275 | Msa0002450:intron | 35.0% |
| GCTGTAAGTGAGGTAAATTT+GGG | - | chr1_1:4350606-4350625 | Msa0002450:intron | 35.0% | |
| !!! | TCTTCTTGGTTTTGGATTAG+GGG | - | chr1_1:4350795-4350814 | Msa0002450:intron | 35.0% |
| TTGAAAGTTGCAATGATGTC+AGG | + | chr1_1:4350831-4350850 | None:intergenic | 35.0% | |
| GCAACTTTCAAAGTCATTGA+TGG | - | chr1_1:4350840-4350859 | Msa0002450:intron | 35.0% | |
| ! | CTATGAAGTTTTTCGTCGAA+TGG | - | chr1_1:4350882-4350901 | Msa0002450:intron | 35.0% |
| AACTTTGCTCGCTAATATCT+TGG | - | chr1_1:4351026-4351045 | Msa0002450:intron | 35.0% | |
| ACTTTGCTCGCTAATATCTT+GGG | - | chr1_1:4351027-4351046 | Msa0002450:intron | 35.0% | |
| TGGTTGTTTAGCCTCTTAAA+AGG | - | chr1_1:4351402-4351421 | Msa0002450:intron | 35.0% | |
| GAGAGAAAAAAACGTACAGT+AGG | + | chr1_1:4351568-4351587 | None:intergenic | 35.0% | |
| ! | AATAGATGTGATGGGACAAA+AGG | - | chr1_1:4346137-4346156 | Msa0002450:intron | 35.0% |
| TTCTTTGTCAGTATCTGATG+TGG | - | chr1_1:4351903-4351922 | Msa0002450:five_prime_UTR | 35.0% | |
| GTATCTGATGTGGTTTAGTT+TGG | - | chr1_1:4351913-4351932 | Msa0002450:five_prime_UTR | 35.0% | |
| !! | ATCTGATGTGGTTTAGTTTG+GGG | - | chr1_1:4351915-4351934 | Msa0002450:five_prime_UTR | 35.0% |
| GAGAATGAATGTATGGCTGT+AGG | + | chr1_1:4341438-4341457 | None:intergenic | 40.0% | |
| GTTCTTAAATGGAGGTCGAA+CGG | + | chr1_1:4341535-4341554 | None:intergenic | 40.0% | |
| !! | TATAGATTTTGCGATGGTGG+AGG | - | chr1_1:4341582-4341601 | Msa0002450:intron | 40.0% |
| ! | GTTTTTACCATCTCGATCCT+CGG | + | chr1_1:4341628-4341647 | None:intergenic | 40.0% |
| TCGAGTTAGGGTTTCATAGA+AGG | - | chr1_1:4341759-4341778 | Msa0002450:intron | 40.0% | |
| GATGTTTCTTCAAAAGACGG+AGG | - | chr1_1:4341833-4341852 | Msa0002450:exon | 40.0% | |
| TCTACAAAACTCACATGCAG+AGG | + | chr1_1:4341916-4341935 | None:intergenic | 40.0% | |
| TTGCAACTTGTGTGCATGAA+TGG | + | chr1_1:4342214-4342233 | None:intergenic | 40.0% | |
| CCAGGAATAAAGATCAACAG+AGG | + | chr1_1:4342435-4342454 | None:intergenic | 40.0% | |
| CCTCTGTTGATCTTTATTCC+TGG | - | chr1_1:4342432-4342451 | Msa0002450:intron | 40.0% | |
| CACCATCACATGTAAGGAAT+GGG | + | chr1_1:4343410-4343429 | None:intergenic | 40.0% | |
| AATACCTGCTCTGATGTTGA+AGG | + | chr1_1:4343502-4343521 | None:intergenic | 40.0% | |
| CCAATTTACCAGAAAGCAGA+AGG | + | chr1_1:4343528-4343547 | None:intergenic | 40.0% | |
| ! | CCTTCTGCTTTCTGGTAAAT+TGG | - | chr1_1:4343525-4343544 | Msa0002450:intron | 40.0% |
| ATTGATAGAGACTGTCATGG+TGG | + | chr1_1:4343593-4343612 | None:intergenic | 40.0% | |
| GTATTGGATGTGGTTGAGTT+TGG | - | chr1_1:4344108-4344127 | Msa0002450:intron | 40.0% | |
| ATTGGATGTGGTTGAGTTTG+GGG | - | chr1_1:4344110-4344129 | Msa0002450:intron | 40.0% | |
| ! | AATCGCATATGCAGCTTTGA+AGG | + | chr1_1:4344856-4344875 | None:intergenic | 40.0% |
| TCAAATCAAGTCCAAGTCCA+CGG | + | chr1_1:4344883-4344902 | None:intergenic | 40.0% | |
| GCATTCGTAATTGCACGTTA+GGG | + | chr1_1:4345309-4345328 | None:intergenic | 40.0% | |
| TGCATTCGTAATTGCACGTT+AGG | + | chr1_1:4345310-4345329 | None:intergenic | 40.0% | |
| TTATGATACTGGGATGTCAG+TGG | - | chr1_1:4345350-4345369 | Msa0002450:intron | 40.0% | |
| !! | TCAAAACCATTTGGTGGGTT+TGG | - | chr1_1:4345544-4345563 | Msa0002450:intron | 40.0% |
| ! | TTTTCTCCAAACCCACCAAA+TGG | + | chr1_1:4345553-4345572 | None:intergenic | 40.0% |
| ! | TTGAAGAAGCATATGACCGA+AGG | - | chr1_1:4345580-4345599 | Msa0002450:intron | 40.0% |
| ACAGTATGTGAATCTAGCTG+GGG | + | chr1_1:4346039-4346058 | None:intergenic | 40.0% | |
| GTACAGTATGTGAATCTAGC+TGG | + | chr1_1:4346041-4346060 | None:intergenic | 40.0% | |
| CAATGGGATATGGTTGAGTT+TGG | - | chr1_1:4346458-4346477 | Msa0002450:intron | 40.0% | |
| ATGGGATATGGTTGAGTTTG+GGG | - | chr1_1:4346460-4346479 | Msa0002450:intron | 40.0% | |
| TATGGTTGAGTTTGGGGATA+TGG | - | chr1_1:4346466-4346485 | Msa0002450:intron | 40.0% | |
| !! | GAAGAAGCATTAGTTCAGCA+AGG | - | chr1_1:4346488-4346507 | Msa0002450:intron | 40.0% |
| CAACCCTTTCTGAATGCATA+GGG | - | chr1_1:4346599-4346618 | Msa0002450:intron | 40.0% | |
| AACCCTTTCTGAATGCATAG+GGG | - | chr1_1:4346600-4346619 | Msa0002450:intron | 40.0% | |
| AACCCCTATGCATTCAGAAA+GGG | + | chr1_1:4346605-4346624 | None:intergenic | 40.0% | |
| AGGCAGAGTCGAGTATTATA+AGG | - | chr1_1:4347198-4347217 | Msa0002450:intron | 40.0% | |
| CAGAGTCGAGTATTATAAGG+TGG | - | chr1_1:4347201-4347220 | Msa0002450:intron | 40.0% | |
| TATAAAAGGGCCATGGAACA+AGG | + | chr1_1:4347492-4347511 | None:intergenic | 40.0% | |
| ! | TCCATGGCCCTTTTATATGA+AGG | - | chr1_1:4347495-4347514 | Msa0002450:intron | 40.0% |
| TCCTTCATATAAAAGGGCCA+TGG | + | chr1_1:4347499-4347518 | None:intergenic | 40.0% | |
| TATAAAAGGGCCATGGAACA+AGG | + | chr1_1:4347492-4347511 | None:intergenic | 40.0% | |
| ! | TCCATGGCCCTTTTATATGA+AGG | - | chr1_1:4347495-4347514 | Msa0002450:intron | 40.0% |
| TCCTTCATATAAAAGGGCCA+TGG | + | chr1_1:4347499-4347518 | None:intergenic | 40.0% | |
| GCATTTACAAGTTCTCTCCT+AGG | - | chr1_1:4347625-4347644 | Msa0002450:intron | 40.0% | |
| TCAGTGACGTATCAAATGGA+CGG | - | chr1_1:4347711-4347730 | Msa0002450:five_prime_UTR | 40.0% | |
| GATAACAGACCTGTCAAAAG+AGG | + | chr1_1:4347775-4347794 | None:intergenic | 40.0% | |
| GGGAAATTTAAAGGACTCAG+AGG | - | chr1_1:4348060-4348079 | Msa0002450:intron | 40.0% | |
| CAAAAATCTTGATGGAGCCA+TGG | - | chr1_1:4348366-4348385 | Msa0002450:intron | 40.0% | |
| CTAATGGGATCGATGTAGAA+GGG | + | chr1_1:4348479-4348498 | None:intergenic | 40.0% | |
| TCTAATGGGATCGATGTAGA+AGG | + | chr1_1:4348480-4348499 | None:intergenic | 40.0% | |
| ! | GTTTTATAGAGGAGAAAGGG+GGG | + | chr1_1:4349295-4349314 | None:intergenic | 40.0% |
| GGAGGTTCTACTTTGTAACT+TGG | + | chr1_1:4349410-4349429 | None:intergenic | 40.0% | |
| CAACACCAAAAGTCCAAGAA+AGG | + | chr1_1:4350264-4350283 | None:intergenic | 40.0% | |
| ! | TTATGACTTGGCTGTAAGTG+AGG | - | chr1_1:4350596-4350615 | Msa0002450:intron | 40.0% |
| GGCTGTAAGTGAGGTAAATT+TGG | - | chr1_1:4350605-4350624 | Msa0002450:intron | 40.0% | |
| !!! | CTTCTTGGTTTTGGATTAGG+GGG | - | chr1_1:4350796-4350815 | Msa0002450:intron | 40.0% |
| !!! | TTCTTGGTTTTGGATTAGGG+GGG | - | chr1_1:4350797-4350816 | Msa0002450:intron | 40.0% |
| TCATAGACCGTTGATGTTTC+AGG | + | chr1_1:4350868-4350887 | None:intergenic | 40.0% | |
| CGAACTTCTTCACTATGGAA+TGG | - | chr1_1:4350955-4350974 | Msa0002450:intron | 40.0% | |
| AACGTACAGTAGGTGAATCT+AGG | + | chr1_1:4351558-4351577 | None:intergenic | 40.0% | |
| CAAGGCTACAACTCTGATGT+TGG | + | chr1_1:4341504-4341523 | None:intergenic | 45.0% | |
| TTAAATGGAGGTCGAACGGT+TGG | + | chr1_1:4341531-4341550 | None:intergenic | 45.0% | |
| ! | ACTTGCAGGTCCGCATTTTT+AGG | - | chr1_1:4343017-4343036 | Msa0002450:intron | 45.0% |
| CCACCATCACATGTAAGGAA+TGG | + | chr1_1:4343411-4343430 | None:intergenic | 45.0% | |
| CCATTCCTTACATGTGATGG+TGG | - | chr1_1:4343408-4343427 | Msa0002450:intron | 45.0% | |
| !! | TTCCTTACATGTGATGGTGG+CGG | - | chr1_1:4343411-4343430 | Msa0002450:intron | 45.0% |
| CTGTGCTTAGTCTCTGATGT+TGG | + | chr1_1:4343468-4343487 | None:intergenic | 45.0% | |
| CTAGAAGCAACAGTTCTGCA+AGG | - | chr1_1:4344138-4344157 | Msa0002450:intron | 45.0% | |
| CAAATCAAGTCCAAGTCCAC+GGG | + | chr1_1:4344882-4344901 | None:intergenic | 45.0% | |
| ! | ATTCATAGGTTCGGTCGTGT+AGG | - | chr1_1:4345040-4345059 | Msa0002450:intron | 45.0% |
| TTGCCTTATAGCAGCCATGA+AGG | - | chr1_1:4345694-4345713 | Msa0002450:intron | 45.0% | |
| GTACCTTCATGGCTGCTATA+AGG | + | chr1_1:4345700-4345719 | None:intergenic | 45.0% | |
| CAGTATGTGAATCTAGCTGG+GGG | + | chr1_1:4346038-4346057 | None:intergenic | 45.0% | |
| CCTATGCATTCAGAAAGGGT+TGG | + | chr1_1:4346601-4346620 | None:intergenic | 45.0% | |
| CCAACCCTTTCTGAATGCAT+AGG | - | chr1_1:4346598-4346617 | Msa0002450:intron | 45.0% | |
| CAACCCCTATGCATTCAGAA+AGG | + | chr1_1:4346606-4346625 | None:intergenic | 45.0% | |
| GGGTCCTATCACATAGTCAA+AGG | + | chr1_1:4346967-4346986 | None:intergenic | 45.0% | |
| GTGGTGTTTACGCTCAGAAT+TGG | - | chr1_1:4347328-4347347 | Msa0002450:intron | 45.0% | |
| TGACGTATCAAATGGACGGA+TGG | - | chr1_1:4347715-4347734 | Msa0002450:five_prime_UTR | 45.0% | |
| GGCCTAAAGAATCCAAGACT+CGG | - | chr1_1:4348088-4348107 | Msa0002450:intron | 45.0% | |
| GTCCGAGTCTTGGATTCTTT+AGG | + | chr1_1:4348093-4348112 | None:intergenic | 45.0% | |
| !! | AATGGTGGTGGAGAAGGAAA+AGG | + | chr1_1:4349201-4349220 | None:intergenic | 45.0% |
| AAGAGAGAAGGTGGATGCAA+TGG | + | chr1_1:4349219-4349238 | None:intergenic | 45.0% | |
| TCGTCAATGGAAGCTTGTGA+TGG | + | chr1_1:4349385-4349404 | None:intergenic | 45.0% | |
| TGATGAGAGCCATTACACCT+CGG | - | chr1_1:4350162-4350181 | Msa0002450:intron | 45.0% | |
| CAAATTTGGCCGAGGTGTAA+TGG | + | chr1_1:4350174-4350193 | None:intergenic | 45.0% | |
| !!! | TCTTGGTTTTGGATTAGGGG+GGG | - | chr1_1:4350798-4350817 | Msa0002450:intron | 45.0% |
| GATGGTGCCTGAAACATCAA+CGG | - | chr1_1:4350858-4350877 | Msa0002450:intron | 45.0% | |
| CTAGAAGCAACAGTTCTGCA+AGG | - | chr1_1:4344138-4344157 | Msa0002450:intron | 45.0% | |
| !!! | TAAAAACAAAATATTTTTTT+TGG | + | chr1_1:4344443-4344462 | None:intergenic | 5.0% |
| !!! | TTTAAATAATATTTCTAATT+AGG | - | chr1_1:4346238-4346257 | Msa0002450:intron | 5.0% |
| !!! | TTTTAATATTTAATATGTTT+TGG | - | chr1_1:4344060-4344079 | Msa0002450:intron | 5.0% |
| !! | ATATAATTTACTTTATAATA+AGG | - | chr1_1:4346868-4346887 | Msa0002450:five_prime_UTR | 5.0% |
| !! | TATAATTTACTTTATAATAA+GGG | - | chr1_1:4346869-4346888 | Msa0002450:five_prime_UTR | 5.0% |
| TTTACCATCTCGATCCTCGG+TGG | + | chr1_1:4341625-4341644 | None:intergenic | 50.0% | |
| GGAATGGGCCTTGATCAGTA+TGG | + | chr1_1:4343395-4343414 | None:intergenic | 50.0% | |
| GGCCCATTCCTTACATGTGA+TGG | - | chr1_1:4343405-4343424 | Msa0002450:intron | 50.0% | |
| ATCGCCTTCAACATCAGAGC+AGG | - | chr1_1:4343495-4343514 | Msa0002450:intron | 50.0% | |
| TGCATATGCGATTCTTCCCG+TGG | - | chr1_1:4344863-4344882 | Msa0002450:intron | 50.0% | |
| AACTCACTAAGTTGCTGCCC+TGG | + | chr1_1:4345995-4346014 | None:intergenic | 50.0% | |
| TGAATCTAGCTGGGGGAAGT+GGG | + | chr1_1:4346031-4346050 | None:intergenic | 50.0% | |
| CATACGCAGGGTCAAGGAAA+GGG | + | chr1_1:4346987-4347006 | None:intergenic | 50.0% | |
| TTTCCTTGACCCTGCGTATG+CGG | - | chr1_1:4346987-4347006 | Msa0002450:intron | 50.0% | |
| CTAAAACTCCCGCATACGCA+GGG | + | chr1_1:4346999-4347018 | None:intergenic | 50.0% | |
| ACTAAAACTCCCGCATACGC+AGG | + | chr1_1:4347000-4347019 | None:intergenic | 50.0% | |
| TTTGTTCCCTGCCAGTCTTG+AGG | - | chr1_1:4347305-4347324 | Msa0002450:intron | 50.0% | |
| TTGTTCCCTGCCAGTCTTGA+GGG | - | chr1_1:4347306-4347325 | Msa0002450:intron | 50.0% | |
| GTAAACACCACCCTCAAGAC+TGG | + | chr1_1:4347319-4347338 | None:intergenic | 50.0% | |
| AAATGGACGGATGGCTACGA+TGG | - | chr1_1:4347724-4347743 | Msa0002450:five_prime_UTR | 50.0% | |
| AATGGACGGATGGCTACGAT+GGG | - | chr1_1:4347725-4347744 | Msa0002450:five_prime_UTR | 50.0% | |
| ! | ACGTGTGAGAGAGGCACATA+AGG | + | chr1_1:4349064-4349083 | None:intergenic | 50.0% |
| GGGAACACATGCAGGCAAAT+GGG | + | chr1_1:4349146-4349165 | None:intergenic | 50.0% | |
| AGGGAACACATGCAGGCAAA+TGG | + | chr1_1:4349147-4349166 | None:intergenic | 50.0% | |
| GGTAAGAAGGGAACACATGC+AGG | + | chr1_1:4349154-4349173 | None:intergenic | 50.0% | |
| AGAGAAGGTGGATGCAATGG+TGG | + | chr1_1:4349216-4349235 | None:intergenic | 50.0% | |
| CAATGGAAGCTTGTGATGGC+TGG | + | chr1_1:4349381-4349400 | None:intergenic | 50.0% | |
| TGGTTGTCTCATCACCCTCA+AGG | + | chr1_1:4351526-4351545 | None:intergenic | 50.0% | |
| CAGTAGGTGAATCTAGGCGA+GGG | + | chr1_1:4351552-4351571 | None:intergenic | 50.0% | |
| ACAGTAGGTGAATCTAGGCG+AGG | + | chr1_1:4351553-4351572 | None:intergenic | 50.0% | |
| AGCCGCCACCATCACATGTA+AGG | + | chr1_1:4343416-4343435 | None:intergenic | 55.0% | |
| TGCGATTCTTCCCGTGGACT+TGG | - | chr1_1:4344869-4344888 | Msa0002450:intron | 55.0% | |
| GTGAATCTAGCTGGGGGAAG+TGG | + | chr1_1:4346032-4346051 | None:intergenic | 55.0% | |
| GCATACGCAGGGTCAAGGAA+AGG | + | chr1_1:4346988-4347007 | None:intergenic | 55.0% | |
| TTCCTTGACCCTGCGTATGC+GGG | - | chr1_1:4346988-4347007 | Msa0002450:intron | 55.0% | |
| !! | TGCGGGAGTTTTAGTGCACC+AGG | - | chr1_1:4347005-4347024 | Msa0002450:intron | 55.0% |
| GATGCTGACACGTGTGAGAG+AGG | + | chr1_1:4349073-4349092 | None:intergenic | 55.0% | |
| !! | GGATGCAATGGTGGTGGAGA+AGG | + | chr1_1:4349207-4349226 | None:intergenic | 55.0% |
| GAAGGTGGATGCAATGGTGG+TGG | + | chr1_1:4349213-4349232 | None:intergenic | 55.0% | |
| GAAAGGGGGGATCATGATGG+TGG | + | chr1_1:4349282-4349301 | None:intergenic | 55.0% | |
| GGAGAAAGGGGGGATCATGA+TGG | + | chr1_1:4349285-4349304 | None:intergenic | 55.0% | |
| GTGAATCTAGGCGAGGGAAG+TGG | + | chr1_1:4351546-4351565 | None:intergenic | 55.0% | |
| GGTCGAACGGTTGGCATGCA+AGG | + | chr1_1:4341522-4341541 | None:intergenic | 60.0% | |
| ACAGACATGCAACGCCACCG+AGG | - | chr1_1:4341608-4341627 | Msa0002450:intron | 60.0% | |
| AACGCCACCGAGGATCGAGA+TGG | - | chr1_1:4341618-4341637 | Msa0002450:intron | 60.0% | |
| TTCCCTGCCAGTCTTGAGGG+TGG | - | chr1_1:4347309-4347328 | Msa0002450:intron | 60.0% | |
| CACCACCCTCAAGACTGGCA+GGG | + | chr1_1:4347314-4347333 | None:intergenic | 60.0% | |
| ACACCACCCTCAAGACTGGC+AGG | + | chr1_1:4347315-4347334 | None:intergenic | 60.0% | |
| CTCCCGCATACGCAGGGTCA+AGG | + | chr1_1:4346993-4347012 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 4341392 | 4352003 | 4341392 | ID=Msa0002450;Name=Msa0002450 |
| chr1_1 | mRNA | 4341392 | 4352003 | 4341392 | ID=Msa0002450-mRNA-1;Parent=Msa0002450;Name=Msa0002450-mRNA-1;_AED=0.36;_eAED=0.36;_QI=936|1|1|1|0.1|0.09|11|101|55 |
| chr1_1 | exon | 4341392 | 4341481 | 4341392 | ID=Msa0002450-mRNA-1:exon:1363;Parent=Msa0002450-mRNA-1 |
| chr1_1 | exon | 4341825 | 4341879 | 4341825 | ID=Msa0002450-mRNA-1:exon:1362;Parent=Msa0002450-mRNA-1 |
| chr1_1 | exon | 4342449 | 4342580 | 4342449 | ID=Msa0002450-mRNA-1:exon:1361;Parent=Msa0002450-mRNA-1 |
| chr1_1 | exon | 4345611 | 4345680 | 4345611 | ID=Msa0002450-mRNA-1:exon:1360;Parent=Msa0002450-mRNA-1 |
| chr1_1 | exon | 4346852 | 4346937 | 4346852 | ID=Msa0002450-mRNA-1:exon:1359;Parent=Msa0002450-mRNA-1 |
| chr1_1 | exon | 4347339 | 4347399 | 4347339 | ID=Msa0002450-mRNA-1:exon:1358;Parent=Msa0002450-mRNA-1 |
| chr1_1 | exon | 4347680 | 4347872 | 4347680 | ID=Msa0002450-mRNA-1:exon:1357;Parent=Msa0002450-mRNA-1 |
| chr1_1 | exon | 4349201 | 4349286 | 4349201 | ID=Msa0002450-mRNA-1:exon:1356;Parent=Msa0002450-mRNA-1 |
| chr1_1 | exon | 4349879 | 4349989 | 4349879 | ID=Msa0002450-mRNA-1:exon:1355;Parent=Msa0002450-mRNA-1 |
| chr1_1 | exon | 4351474 | 4351546 | 4351474 | ID=Msa0002450-mRNA-1:exon:1354;Parent=Msa0002450-mRNA-1 |
| chr1_1 | exon | 4351756 | 4352003 | 4351756 | ID=Msa0002450-mRNA-1:exon:1353;Parent=Msa0002450-mRNA-1 |
| chr1_1 | five_prime_UTR | 4351756 | 4352003 | 4351756 | ID=Msa0002450-mRNA-1:five_prime_utr;Parent=Msa0002450-mRNA-1 |
| chr1_1 | five_prime_UTR | 4351474 | 4351546 | 4351474 | ID=Msa0002450-mRNA-1:five_prime_utr;Parent=Msa0002450-mRNA-1 |
| chr1_1 | five_prime_UTR | 4349879 | 4349989 | 4349879 | ID=Msa0002450-mRNA-1:five_prime_utr;Parent=Msa0002450-mRNA-1 |
| chr1_1 | five_prime_UTR | 4349201 | 4349286 | 4349201 | ID=Msa0002450-mRNA-1:five_prime_utr;Parent=Msa0002450-mRNA-1 |
| chr1_1 | five_prime_UTR | 4347680 | 4347872 | 4347680 | ID=Msa0002450-mRNA-1:five_prime_utr;Parent=Msa0002450-mRNA-1 |
| chr1_1 | five_prime_UTR | 4347339 | 4347399 | 4347339 | ID=Msa0002450-mRNA-1:five_prime_utr;Parent=Msa0002450-mRNA-1 |
| chr1_1 | five_prime_UTR | 4346852 | 4346937 | 4346852 | ID=Msa0002450-mRNA-1:five_prime_utr;Parent=Msa0002450-mRNA-1 |
| chr1_1 | five_prime_UTR | 4345611 | 4345680 | 4345611 | ID=Msa0002450-mRNA-1:five_prime_utr;Parent=Msa0002450-mRNA-1 |
| chr1_1 | five_prime_UTR | 4342573 | 4342580 | 4342573 | ID=Msa0002450-mRNA-1:five_prime_utr;Parent=Msa0002450-mRNA-1 |
| chr1_1 | CDS | 4342449 | 4342572 | 4342449 | ID=Msa0002450-mRNA-1:cds;Parent=Msa0002450-mRNA-1 |
| chr1_1 | CDS | 4341836 | 4341879 | 4341836 | ID=Msa0002450-mRNA-1:cds;Parent=Msa0002450-mRNA-1 |
| chr1_1 | three_prime_UTR | 4341825 | 4341835 | 4341825 | ID=Msa0002450-mRNA-1:three_prime_utr;Parent=Msa0002450-mRNA-1 |
| chr1_1 | three_prime_UTR | 4341392 | 4341481 | 4341392 | ID=Msa0002450-mRNA-1:three_prime_utr;Parent=Msa0002450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
