Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1172980 | XP_003626394.1 | 95.023 | 442 | 14 | 4 | 1 | 435 | 1 | 441 | 0.0 | 850 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1172980 | sp|F4K5T4|STKLU_ARATH | 39.323 | 473 | 193 | 15 | 1 | 429 | 1 | 423 | 6.50e-86 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1172980 | TF | GeBP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005910 | Msa1172980 | 0.817348 | 3.454711e-52 | -8.615850e-47 |
| Msa0036250 | Msa1172980 | -0.802056 | 6.722901e-49 | -8.615850e-47 |
| Msa0628880 | Msa1172980 | 0.812103 | 5.017228e-51 | -8.615850e-47 |
| Msa0660650 | Msa1172980 | 0.802481 | 5.497098e-49 | -8.615850e-47 |
| Msa0683150 | Msa1172980 | -0.804027 | 2.630289e-49 | -8.615850e-47 |
| Msa0700570 | Msa1172980 | 0.827827 | 1.261551e-54 | -8.615850e-47 |
| Msa0744010 | Msa1172980 | -0.801268 | 9.756461e-49 | -8.615850e-47 |
| Msa0755550 | Msa1172980 | -0.803945 | 2.735412e-49 | -8.615850e-47 |
| Msa0788160 | Msa1172980 | -0.803938 | 2.745323e-49 | -8.615850e-47 |
| Msa0825360 | Msa1172980 | -0.801171 | 1.021259e-48 | -8.615850e-47 |
| Msa0839530 | Msa1172980 | 0.800761 | 1.238144e-48 | -8.615850e-47 |
| Msa0179830 | Msa1172980 | 0.802744 | 4.851688e-49 | -8.615850e-47 |
| Msa0216390 | Msa1172980 | -0.806615 | 7.546509e-50 | -8.615850e-47 |
| Msa0393880 | Msa1172980 | -0.806165 | 9.390871e-50 | -8.615850e-47 |
| Msa1045750 | Msa1172980 | -0.812114 | 4.989802e-51 | -8.615850e-47 |
| Msa1064240 | Msa1172980 | 0.802304 | 5.977340e-49 | -8.615850e-47 |
| Msa0255770 | Msa1172980 | -0.819334 | 1.226261e-52 | -8.615850e-47 |
| Msa0256590 | Msa1172980 | -0.814088 | 1.841027e-51 | -8.615850e-47 |
| Msa0347280 | Msa1172980 | -0.812873 | 3.404999e-51 | -8.615850e-47 |
| Msa1172980 | Msa1217260 | 0.811681 | 6.197876e-51 | -8.615850e-47 |
| Msa1172980 | Msa1250500 | -0.803909 | 2.783971e-49 | -8.615850e-47 |
| Msa1172980 | Msa1297500 | -0.801397 | 9.177619e-49 | -8.615850e-47 |
| Msa1172980 | Msa1379020 | 0.817349 | 3.453172e-52 | -8.615850e-47 |
| Msa1172980 | Msa1395390 | 0.949722 | 7.143210e-108 | -8.615850e-47 |
| Msa1172980 | Msa1426880 | -0.802980 | 4.335475e-49 | -8.615850e-47 |
| Msa1172980 | Msa1428490 | 0.810876 | 9.267762e-51 | -8.615850e-47 |
| Msa0489330 | Msa1172980 | -0.810892 | 9.196835e-51 | -8.615850e-47 |
| Msa0503220 | Msa1172980 | 0.825859 | 3.725678e-54 | -8.615850e-47 |
| Msa0518190 | Msa1172980 | 0.815416 | 9.347996e-52 | -8.615850e-47 |
| Msa0564090 | Msa1172980 | 0.803556 | 3.294734e-49 | -8.615850e-47 |
| Msa0588620 | Msa1172980 | 0.811063 | 8.445081e-51 | -8.615850e-47 |
| Msa0902090 | Msa1172980 | 0.803945 | 2.735412e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1172980 | MtrunA17_Chr7g0273821 | 95.023 | 442 | 14 | 4 | 1 | 435 | 1 | 441 | 0.0 | 850 |
| Msa1172980 | MtrunA17_Chr1g0191021 | 43.377 | 385 | 140 | 13 | 54 | 427 | 53 | 370 | 3.79e-76 | 242 |
| Msa1172980 | MtrunA17_Chr1g0191011 | 50.000 | 106 | 45 | 3 | 101 | 201 | 127 | 229 | 7.20e-25 | 105 |
| Msa1172980 | MtrunA17_Chr1g0191011 | 39.815 | 108 | 46 | 4 | 323 | 428 | 282 | 372 | 4.09e-13 | 70.5 |
| Msa1172980 | MtrunA17_Chr3g0113131 | 33.929 | 112 | 66 | 2 | 106 | 217 | 153 | 256 | 2.17e-14 | 74.3 |
| Msa1172980 | MtrunA17_Chr2g0280431 | 34.615 | 104 | 58 | 2 | 100 | 203 | 198 | 291 | 6.78e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1172980 | AT5G28040.2 | 39.323 | 473 | 193 | 15 | 1 | 429 | 1 | 423 | 6.61e-87 | 271 |
| Msa1172980 | AT5G28040.1 | 39.323 | 473 | 193 | 15 | 1 | 429 | 1 | 423 | 6.61e-87 | 271 |
| Msa1172980 | AT3G04930.2 | 63.030 | 165 | 50 | 5 | 45 | 207 | 86 | 241 | 6.41e-60 | 201 |
| Msa1172980 | AT3G04930.1 | 63.030 | 165 | 50 | 5 | 45 | 207 | 86 | 241 | 4.50e-59 | 200 |
| Msa1172980 | AT3G04930.1 | 37.584 | 149 | 60 | 6 | 305 | 429 | 313 | 452 | 1.10e-15 | 79.3 |
| Msa1172980 | AT4G00390.1 | 36.420 | 162 | 80 | 5 | 40 | 200 | 108 | 247 | 1.38e-19 | 90.1 |
| Msa1172980 | AT1G61730.1 | 36.486 | 148 | 78 | 4 | 53 | 200 | 114 | 245 | 1.49e-19 | 90.1 |
| Msa1172980 | AT4G01260.1 | 36.181 | 199 | 102 | 8 | 39 | 215 | 36 | 231 | 4.28e-19 | 88.2 |
| Msa1172980 | AT1G11510.1 | 39.535 | 129 | 71 | 3 | 78 | 202 | 106 | 231 | 9.26e-19 | 87.8 |
| Msa1172980 | AT1G11510.2 | 40.777 | 103 | 58 | 1 | 100 | 202 | 103 | 202 | 1.20e-18 | 87.0 |
| Msa1172980 | AT4G25210.1 | 36.641 | 131 | 69 | 4 | 84 | 201 | 110 | 239 | 2.91e-17 | 83.6 |
| Msa1172980 | AT1G44810.1 | 36.066 | 122 | 68 | 2 | 91 | 208 | 107 | 222 | 1.04e-15 | 77.8 |
| Msa1172980 | AT2G01370.1 | 38.614 | 101 | 57 | 3 | 101 | 199 | 74 | 171 | 1.42e-14 | 73.9 |
| Msa1172980 | AT4G00610.1 | 32.520 | 123 | 71 | 3 | 80 | 199 | 120 | 233 | 5.31e-13 | 70.1 |
| Msa1172980 | AT2G25650.1 | 33.684 | 95 | 63 | 0 | 105 | 199 | 64 | 158 | 2.19e-11 | 65.9 |
| Msa1172980 | AT5G14280.1 | 30.526 | 95 | 66 | 0 | 108 | 202 | 63 | 157 | 7.59e-11 | 63.5 |
Find 89 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGAGGAAGCAACAGATTT+TGG | 0.165742 | 8_1:+3183504 | Msa1172980:CDS |
| CCGTTTCAGACGATGAATTT+AGG | 0.215452 | 8_1:+3183451 | Msa1172980:CDS |
| GAGTTGTTTATCGCCGTTTA+AGG | 0.229902 | 8_1:+3183360 | Msa1172980:CDS |
| TCCGTCACCGTCGCCGTTCC+CGG | 0.291496 | 8_1:+3182473 | Msa1172980:CDS |
| CAGACGATGAATTTAGGTTT+TGG | 0.306437 | 8_1:+3183457 | Msa1172980:CDS |
| GTAGCATAAGCATTAGGATT+AGG | 0.338681 | 8_1:-3183190 | None:intergenic |
| TTGATCCAAACGTTGACGTT+TGG | 0.362708 | 8_1:-3182564 | None:intergenic |
| GCAGTTGTAGCATAAGCATT+AGG | 0.365701 | 8_1:-3183196 | None:intergenic |
| ACGGGAGTGAAATTGAGGTT+AGG | 0.366561 | 8_1:-3182986 | None:intergenic |
| GCAGCATTAGTATTAACATT+AGG | 0.376257 | 8_1:-3183256 | None:intergenic |
| CGATTCCAAACGTCAACGTT+TGG | 0.378466 | 8_1:+3182559 | Msa1172980:CDS |
| AGTAATAATTGTAGTACTGC+TGG | 0.385802 | 8_1:+3183301 | Msa1172980:CDS |
| TTGTGATTAGGATAGGGATT+AGG | 0.391090 | 8_1:-3183154 | None:intergenic |
| CAAACGTTGACGTTTGGAAT+CGG | 0.393384 | 8_1:-3182558 | None:intergenic |
| GGAAGTGTATTCAAAGAGAT+TGG | 0.394682 | 8_1:+3183531 | Msa1172980:CDS |
| ACATTAGGAGTAGTAATTGT+AGG | 0.395915 | 8_1:-3183241 | None:intergenic |
| CGGGAGTGAAATTGAGGTTA+GGG | 0.396355 | 8_1:-3182985 | None:intergenic |
| TTGAAATCTCTCGCAAGATC+TGG | 0.402112 | 8_1:+3182891 | Msa1172980:CDS |
| TGGAGGTCTGAGAGCTCCTC+CGG | 0.404026 | 8_1:-3182492 | None:intergenic |
| GCAATGGGAGGAGGACTGTT+TGG | 0.407072 | 8_1:+3183397 | Msa1172980:CDS |
| ATCGCCGTTTAAGGAATTGA+TGG | 0.410493 | 8_1:+3183369 | Msa1172980:CDS |
| TTGTGATTGTGATTGTGATT+AGG | 0.420049 | 8_1:-3183166 | None:intergenic |
| GTAATTGTAGGTGTTATTGC+AGG | 0.422477 | 8_1:-3183229 | None:intergenic |
| GTTGCGGTTGGTGTTAGAAT+TGG | 0.424821 | 8_1:-3182512 | None:intergenic |
| CCAGCCATCAATTCCTTAAA+CGG | 0.436526 | 8_1:-3183373 | None:intergenic |
| GAGAATTGGTGGATGAGAAA+TGG | 0.440436 | 8_1:+3183485 | Msa1172980:CDS |
| TTGAGGTTAGGGTTAGGACT+TGG | 0.440851 | 8_1:-3182974 | None:intergenic |
| GATGTCTTCTTCAGCGAAAA+CGG | 0.442070 | 8_1:-3182339 | None:intergenic |
| GTGAAATTGAGGTTAGGGTT+AGG | 0.470406 | 8_1:-3182980 | None:intergenic |
| GATGAATTGCGTTCAGTTGG+TGG | 0.477018 | 8_1:+3183586 | Msa1172980:CDS |
| GAATTGATGGCTGGTGCAAT+GGG | 0.477602 | 8_1:+3183382 | Msa1172980:CDS |
| GATAGGGATTAGGATTATTG+AGG | 0.478564 | 8_1:-3183144 | None:intergenic |
| CAACCACGCGGAAGCGTTCA+CGG | 0.479940 | 8_1:+3183032 | Msa1172980:CDS |
| GCGGTTGGTGTTAGAATTGG+AGG | 0.483246 | 8_1:-3182509 | None:intergenic |
| GTTGAAATCGAGTTGAAGCT+TGG | 0.492100 | 8_1:-3182753 | None:intergenic |
| CCTAAATTCATCGTCTGAAA+CGG | 0.495889 | 8_1:-3183451 | None:intergenic |
| GGCGAAGATGATCGTGGTTG+CGG | 0.497664 | 8_1:-3182528 | None:intergenic |
| CTCAAAGCTTCTGATAGAAA+CGG | 0.498357 | 8_1:-3183062 | None:intergenic |
| TCCGGGAACGGCGACGGTGA+CGG | 0.500148 | 8_1:-3182474 | None:intergenic |
| GAATTACGGGAGTGAAATTG+AGG | 0.501359 | 8_1:-3182991 | None:intergenic |
| GTCGTGTTGCTGTGAAGCCA+TGG | 0.514457 | 8_1:-3182315 | None:intergenic |
| AGCTCCTCCGGGAACGGCGA+CGG | 0.517162 | 8_1:-3182480 | None:intergenic |
| TCAACGTTTGGATCAAATTG+AGG | 0.517701 | 8_1:+3182571 | Msa1172980:CDS |
| TGCGGATCTTCTCAACGAGC+TGG | 0.526099 | 8_1:-3182781 | None:intergenic |
| GGCGACGGTGACGGAGGGAA+CGG | 0.527528 | 8_1:-3182465 | None:intergenic |
| ATAGTAACATCACCGGCGAT+TGG | 0.530842 | 8_1:-3182926 | None:intergenic |
| ACTGCTGGGAATGGTGTAGC+TGG | 0.532760 | 8_1:+3183316 | Msa1172980:CDS |
| CCGTTTAAGGAATTGATGGC+TGG | 0.533833 | 8_1:+3183373 | Msa1172980:CDS |
| ATGGCTGGTGCAATGGGAGG+AGG | 0.535572 | 8_1:+3183388 | Msa1172980:CDS |
| GAGCAAAATGAGCTCTGGTA+AGG | 0.538676 | 8_1:+3182832 | Msa1172980:CDS |
| CGTGAATCTTCAACCATAGG+TGG | 0.540544 | 8_1:-3182602 | None:intergenic |
| CTTGATGAATTGCGTTCAGT+TGG | 0.542946 | 8_1:+3183583 | Msa1172980:CDS |
| ACGTTTGGAATCGGTTGAGT+CGG | 0.547440 | 8_1:-3182549 | None:intergenic |
| GTTGTGAGCAAAATGAGCTC+TGG | 0.549041 | 8_1:+3182827 | Msa1172980:CDS |
| ATGGACCGACGAAGACGAGA+TGG | 0.549218 | 8_1:+3182643 | Msa1172980:CDS |
| GGAATTGATGGCTGGTGCAA+TGG | 0.550630 | 8_1:+3183381 | Msa1172980:CDS |
| GTAATAATTGTAGTACTGCT+GGG | 0.552619 | 8_1:+3183302 | Msa1172980:CDS |
| ATTGTGATTGTGATTAGGAT+AGG | 0.560354 | 8_1:-3183161 | None:intergenic |
| TTGCGTGAATCTTCAACCAT+AGG | 0.563271 | 8_1:-3182605 | None:intergenic |
| CTTGCGAGAGATTTCAAACG+TGG | 0.563273 | 8_1:-3182885 | None:intergenic |
| GACGAGATGGAACTGTTACA+AGG | 0.568392 | 8_1:+3182656 | Msa1172980:CDS |
| TTGTGATTGTGATTAGGATA+GGG | 0.568508 | 8_1:-3183160 | None:intergenic |
| TCTGAGAGCTCCTCCGGGAA+CGG | 0.571875 | 8_1:-3182486 | None:intergenic |
| AGCTCGTTGAGAAGATCCGC+AGG | 0.575154 | 8_1:+3182783 | Msa1172980:CDS |
| GGAACGGCGACGGTGACGGA+GGG | 0.575721 | 8_1:-3182470 | None:intergenic |
| CGAATACGAAGAAGAAGATG+AGG | 0.576730 | 8_1:+3182385 | Msa1172980:CDS |
| AACAACGTAGCGCCAATCGC+CGG | 0.577047 | 8_1:+3182914 | Msa1172980:CDS |
| GGAGGTCTGAGAGCTCCTCC+GGG | 0.580886 | 8_1:-3182491 | None:intergenic |
| GGAGGACTGTTTGGATCGCG+TGG | 0.584367 | 8_1:+3183406 | Msa1172980:CDS |
| TGTATTTCTTCTTCAACCTG+CGG | 0.587483 | 8_1:-3182799 | None:intergenic |
| AATTGGTGGATGAGAAATGG+AGG | 0.596698 | 8_1:+3183488 | Msa1172980:CDS |
| AAGATGATCGTGGTTGCGGT+TGG | 0.598224 | 8_1:-3182524 | None:intergenic |
| GGGAACGGCGACGGTGACGG+AGG | 0.599600 | 8_1:-3182471 | None:intergenic |
| CAGTTCCATCTCGTCTTCGT+CGG | 0.601304 | 8_1:-3182648 | None:intergenic |
| AATTGTAGTACTGCTGGGAA+TGG | 0.606803 | 8_1:+3183307 | Msa1172980:CDS |
| TTCATCGTCTGAAACGGTAG+CGG | 0.613739 | 8_1:-3183445 | None:intergenic |
| TCGTGTTGCTGTGAAGCCAT+GGG | 0.619858 | 8_1:-3182314 | None:intergenic |
| GGAACGGAGATAGAAGCAGA+TGG | 0.620359 | 8_1:-3182449 | None:intergenic |
| GTCGTCTATAGTAACATCAC+CGG | 0.620625 | 8_1:-3182933 | None:intergenic |
| TTGATGGCTGGTGCAATGGG+AGG | 0.622136 | 8_1:+3183385 | Msa1172980:CDS |
| CTCGATTACACAACACAGAG+AGG | 0.638279 | 8_1:+3182683 | Msa1172980:CDS |
| TCCCGTAATTCTCAAAAGCG+AGG | 0.641190 | 8_1:+3183003 | Msa1172980:CDS |
| GATTTGATCGTAGAATTGAG+CGG | 0.644134 | 8_1:-3182726 | None:intergenic |
| CTTCTGATAGAAACGGATCG+AGG | 0.677211 | 8_1:-3183055 | None:intergenic |
| TGAGTCGGCGAAGATGATCG+TGG | 0.687674 | 8_1:-3182534 | None:intergenic |
| GAAGCGTGAATCAAATGATG+CGG | 0.695426 | 8_1:+3183084 | Msa1172980:CDS |
| GTCACCGTCGCCGTTCCCGG+AGG | 0.698715 | 8_1:+3182476 | Msa1172980:CDS |
| GTGTGATTGAAGAGACAGTG+AGG | 0.762218 | 8_1:+3183338 | Msa1172980:CDS |
| GCGAGGTAAATTCAACCACG+CGG | 0.795949 | 8_1:+3183020 | Msa1172980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TTGTGATTGTGATTAGGATA+GGG | - | chr8_1:3183163-3183182 | None:intergenic | 30.0% | |
| ATTGTGATTGTGATTAGGAT+AGG | - | chr8_1:3183164-3183183 | None:intergenic | 30.0% | |
| TTGTGATTGTGATTGTGATT+AGG | - | chr8_1:3183169-3183188 | None:intergenic | 30.0% | |
| ACATTAGGAGTAGTAATTGT+AGG | - | chr8_1:3183244-3183263 | None:intergenic | 30.0% | |
| GCAGCATTAGTATTAACATT+AGG | - | chr8_1:3183259-3183278 | None:intergenic | 30.0% | |
| AGTAATAATTGTAGTACTGC+TGG | + | chr8_1:3183301-3183320 | Msa1172980:CDS | 30.0% | |
| GTAATAATTGTAGTACTGCT+GGG | + | chr8_1:3183302-3183321 | Msa1172980:CDS | 30.0% | |
| TTGTGATTGTGATTAGGATA+GGG | - | chr8_1:3183163-3183182 | None:intergenic | 30.0% | |
| ATTGTGATTGTGATTAGGAT+AGG | - | chr8_1:3183164-3183183 | None:intergenic | 30.0% | |
| TTGTGATTGTGATTGTGATT+AGG | - | chr8_1:3183169-3183188 | None:intergenic | 30.0% | |
| ACATTAGGAGTAGTAATTGT+AGG | - | chr8_1:3183244-3183263 | None:intergenic | 30.0% | |
| GCAGCATTAGTATTAACATT+AGG | - | chr8_1:3183259-3183278 | None:intergenic | 30.0% | |
| AGTAATAATTGTAGTACTGC+TGG | + | chr8_1:3183301-3183320 | Msa1172980:CDS | 30.0% | |
| GTAATAATTGTAGTACTGCT+GGG | + | chr8_1:3183302-3183321 | Msa1172980:CDS | 30.0% | |
| TCAACGTTTGGATCAAATTG+AGG | + | chr8_1:3182571-3182590 | Msa1172980:CDS | 35.0% | |
| GATTTGATCGTAGAATTGAG+CGG | - | chr8_1:3182729-3182748 | None:intergenic | 35.0% | |
| TGTATTTCTTCTTCAACCTG+CGG | - | chr8_1:3182802-3182821 | None:intergenic | 35.0% | |
| !! | TACCTCGCTTTTGAGAATTA+CGG | - | chr8_1:3183008-3183027 | None:intergenic | 35.0% |
| CTCAAAGCTTCTGATAGAAA+CGG | - | chr8_1:3183065-3183084 | None:intergenic | 35.0% | |
| GATAGGGATTAGGATTATTG+AGG | - | chr8_1:3183147-3183166 | None:intergenic | 35.0% | |
| TTGTGATTAGGATAGGGATT+AGG | - | chr8_1:3183157-3183176 | None:intergenic | 35.0% | |
| GTAGCATAAGCATTAGGATT+AGG | - | chr8_1:3183193-3183212 | None:intergenic | 35.0% | |
| !! | GTAATTGTAGGTGTTATTGC+AGG | - | chr8_1:3183232-3183251 | None:intergenic | 35.0% |
| CCTAAATTCATCGTCTGAAA+CGG | - | chr8_1:3183454-3183473 | None:intergenic | 35.0% | |
| !! | CAGACGATGAATTTAGGTTT+TGG | + | chr8_1:3183457-3183476 | Msa1172980:CDS | 35.0% |
| !! | ACGATGAATTTAGGTTTTGG+AGG | + | chr8_1:3183460-3183479 | Msa1172980:CDS | 35.0% |
| !!! | ATGAATTTAGGTTTTGGAGG+TGG | + | chr8_1:3183463-3183482 | Msa1172980:CDS | 35.0% |
| !!! | GAAGCAACAGATTTTGGAAT+TGG | + | chr8_1:3183510-3183529 | Msa1172980:CDS | 35.0% |
| ! | GGAAGTGTATTCAAAGAGAT+TGG | + | chr8_1:3183531-3183550 | Msa1172980:CDS | 35.0% |
| TCAACGTTTGGATCAAATTG+AGG | + | chr8_1:3182571-3182590 | Msa1172980:CDS | 35.0% | |
| GATTTGATCGTAGAATTGAG+CGG | - | chr8_1:3182729-3182748 | None:intergenic | 35.0% | |
| TGTATTTCTTCTTCAACCTG+CGG | - | chr8_1:3182802-3182821 | None:intergenic | 35.0% | |
| !! | TACCTCGCTTTTGAGAATTA+CGG | - | chr8_1:3183008-3183027 | None:intergenic | 35.0% |
| CTCAAAGCTTCTGATAGAAA+CGG | - | chr8_1:3183065-3183084 | None:intergenic | 35.0% | |
| GATAGGGATTAGGATTATTG+AGG | - | chr8_1:3183147-3183166 | None:intergenic | 35.0% | |
| TTGTGATTAGGATAGGGATT+AGG | - | chr8_1:3183157-3183176 | None:intergenic | 35.0% | |
| GTAGCATAAGCATTAGGATT+AGG | - | chr8_1:3183193-3183212 | None:intergenic | 35.0% | |
| !! | GTAATTGTAGGTGTTATTGC+AGG | - | chr8_1:3183232-3183251 | None:intergenic | 35.0% |
| CCTAAATTCATCGTCTGAAA+CGG | - | chr8_1:3183454-3183473 | None:intergenic | 35.0% | |
| !! | CAGACGATGAATTTAGGTTT+TGG | + | chr8_1:3183457-3183476 | Msa1172980:CDS | 35.0% |
| !! | ACGATGAATTTAGGTTTTGG+AGG | + | chr8_1:3183460-3183479 | Msa1172980:CDS | 35.0% |
| !!! | ATGAATTTAGGTTTTGGAGG+TGG | + | chr8_1:3183463-3183482 | Msa1172980:CDS | 35.0% |
| !!! | GAAGCAACAGATTTTGGAAT+TGG | + | chr8_1:3183510-3183529 | Msa1172980:CDS | 35.0% |
| ! | GGAAGTGTATTCAAAGAGAT+TGG | + | chr8_1:3183531-3183550 | Msa1172980:CDS | 35.0% |
| GATGTCTTCTTCAGCGAAAA+CGG | - | chr8_1:3182342-3182361 | None:intergenic | 40.0% | |
| CGAATACGAAGAAGAAGATG+AGG | + | chr8_1:3182385-3182404 | Msa1172980:CDS | 40.0% | |
| ! | CAAACGTTGACGTTTGGAAT+CGG | - | chr8_1:3182561-3182580 | None:intergenic | 40.0% |
| TTGATCCAAACGTTGACGTT+TGG | - | chr8_1:3182567-3182586 | None:intergenic | 40.0% | |
| TGAGGAGAAAAAACCACCTA+TGG | + | chr8_1:3182589-3182608 | Msa1172980:CDS | 40.0% | |
| TTGCGTGAATCTTCAACCAT+AGG | - | chr8_1:3182608-3182627 | None:intergenic | 40.0% | |
| !!! | GCAAGCTTTTTCAACGTCTA+TGG | + | chr8_1:3182624-3182643 | Msa1172980:CDS | 40.0% |
| !! | GTTGAAATCGAGTTGAAGCT+TGG | - | chr8_1:3182756-3182775 | None:intergenic | 40.0% |
| TTGAAATCTCTCGCAAGATC+TGG | + | chr8_1:3182891-3182910 | Msa1172980:CDS | 40.0% | |
| GTCGTCTATAGTAACATCAC+CGG | - | chr8_1:3182936-3182955 | None:intergenic | 40.0% | |
| GTGAAATTGAGGTTAGGGTT+AGG | - | chr8_1:3182983-3183002 | None:intergenic | 40.0% | |
| GAATTACGGGAGTGAAATTG+AGG | - | chr8_1:3182994-3183013 | None:intergenic | 40.0% | |
| !! | ACCTCGCTTTTGAGAATTAC+GGG | - | chr8_1:3183007-3183026 | None:intergenic | 40.0% |
| GAAGCGTGAATCAAATGATG+CGG | + | chr8_1:3183084-3183103 | Msa1172980:CDS | 40.0% | |
| GCAGTTGTAGCATAAGCATT+AGG | - | chr8_1:3183199-3183218 | None:intergenic | 40.0% | |
| AATTGTAGTACTGCTGGGAA+TGG | + | chr8_1:3183307-3183326 | Msa1172980:CDS | 40.0% | |
| GAGTTGTTTATCGCCGTTTA+AGG | + | chr8_1:3183360-3183379 | Msa1172980:CDS | 40.0% | |
| ATCGCCGTTTAAGGAATTGA+TGG | + | chr8_1:3183369-3183388 | Msa1172980:CDS | 40.0% | |
| CCAGCCATCAATTCCTTAAA+CGG | - | chr8_1:3183376-3183395 | None:intergenic | 40.0% | |
| CCGTTTCAGACGATGAATTT+AGG | + | chr8_1:3183451-3183470 | Msa1172980:CDS | 40.0% | |
| ! | GAGAATTGGTGGATGAGAAA+TGG | + | chr8_1:3183485-3183504 | Msa1172980:CDS | 40.0% |
| ! | AATTGGTGGATGAGAAATGG+AGG | + | chr8_1:3183488-3183507 | Msa1172980:CDS | 40.0% |
| ! | ATGGAGGAAGCAACAGATTT+TGG | + | chr8_1:3183504-3183523 | Msa1172980:CDS | 40.0% |
| CTTGATGAATTGCGTTCAGT+TGG | + | chr8_1:3183583-3183602 | Msa1172980:CDS | 40.0% | |
| GATGTCTTCTTCAGCGAAAA+CGG | - | chr8_1:3182342-3182361 | None:intergenic | 40.0% | |
| CGAATACGAAGAAGAAGATG+AGG | + | chr8_1:3182385-3182404 | Msa1172980:CDS | 40.0% | |
| ! | CAAACGTTGACGTTTGGAAT+CGG | - | chr8_1:3182561-3182580 | None:intergenic | 40.0% |
| TTGATCCAAACGTTGACGTT+TGG | - | chr8_1:3182567-3182586 | None:intergenic | 40.0% | |
| TGAGGAGAAAAAACCACCTA+TGG | + | chr8_1:3182589-3182608 | Msa1172980:CDS | 40.0% | |
| TTGCGTGAATCTTCAACCAT+AGG | - | chr8_1:3182608-3182627 | None:intergenic | 40.0% | |
| !!! | GCAAGCTTTTTCAACGTCTA+TGG | + | chr8_1:3182624-3182643 | Msa1172980:CDS | 40.0% |
| !! | GTTGAAATCGAGTTGAAGCT+TGG | - | chr8_1:3182756-3182775 | None:intergenic | 40.0% |
| TTGAAATCTCTCGCAAGATC+TGG | + | chr8_1:3182891-3182910 | Msa1172980:CDS | 40.0% | |
| GTCGTCTATAGTAACATCAC+CGG | - | chr8_1:3182936-3182955 | None:intergenic | 40.0% | |
| GTGAAATTGAGGTTAGGGTT+AGG | - | chr8_1:3182983-3183002 | None:intergenic | 40.0% | |
| GAATTACGGGAGTGAAATTG+AGG | - | chr8_1:3182994-3183013 | None:intergenic | 40.0% | |
| !! | ACCTCGCTTTTGAGAATTAC+GGG | - | chr8_1:3183007-3183026 | None:intergenic | 40.0% |
| GAAGCGTGAATCAAATGATG+CGG | + | chr8_1:3183084-3183103 | Msa1172980:CDS | 40.0% | |
| GCAGTTGTAGCATAAGCATT+AGG | - | chr8_1:3183199-3183218 | None:intergenic | 40.0% | |
| AATTGTAGTACTGCTGGGAA+TGG | + | chr8_1:3183307-3183326 | Msa1172980:CDS | 40.0% | |
| GAGTTGTTTATCGCCGTTTA+AGG | + | chr8_1:3183360-3183379 | Msa1172980:CDS | 40.0% | |
| ATCGCCGTTTAAGGAATTGA+TGG | + | chr8_1:3183369-3183388 | Msa1172980:CDS | 40.0% | |
| CCAGCCATCAATTCCTTAAA+CGG | - | chr8_1:3183376-3183395 | None:intergenic | 40.0% | |
| CCGTTTCAGACGATGAATTT+AGG | + | chr8_1:3183451-3183470 | Msa1172980:CDS | 40.0% | |
| ! | GAGAATTGGTGGATGAGAAA+TGG | + | chr8_1:3183485-3183504 | Msa1172980:CDS | 40.0% |
| ! | AATTGGTGGATGAGAAATGG+AGG | + | chr8_1:3183488-3183507 | Msa1172980:CDS | 40.0% |
| ! | ATGGAGGAAGCAACAGATTT+TGG | + | chr8_1:3183504-3183523 | Msa1172980:CDS | 40.0% |
| CTTGATGAATTGCGTTCAGT+TGG | + | chr8_1:3183583-3183602 | Msa1172980:CDS | 40.0% | |
| !! | GTTGCGGTTGGTGTTAGAAT+TGG | - | chr8_1:3182515-3182534 | None:intergenic | 45.0% |
| ! | ACGTTTGGAATCGGTTGAGT+CGG | - | chr8_1:3182552-3182571 | None:intergenic | 45.0% |
| CGATTCCAAACGTCAACGTT+TGG | + | chr8_1:3182559-3182578 | Msa1172980:CDS | 45.0% | |
| CGTGAATCTTCAACCATAGG+TGG | - | chr8_1:3182605-3182624 | None:intergenic | 45.0% | |
| GACGAGATGGAACTGTTACA+AGG | + | chr8_1:3182656-3182675 | Msa1172980:CDS | 45.0% | |
| CTCGATTACACAACACAGAG+AGG | + | chr8_1:3182683-3182702 | Msa1172980:CDS | 45.0% | |
| GTTGTGAGCAAAATGAGCTC+TGG | + | chr8_1:3182827-3182846 | Msa1172980:CDS | 45.0% | |
| ! | GAGCAAAATGAGCTCTGGTA+AGG | + | chr8_1:3182832-3182851 | Msa1172980:CDS | 45.0% |
| CTTGCGAGAGATTTCAAACG+TGG | - | chr8_1:3182888-3182907 | None:intergenic | 45.0% | |
| ATAGTAACATCACCGGCGAT+TGG | - | chr8_1:3182929-3182948 | None:intergenic | 45.0% | |
| TTGAGGTTAGGGTTAGGACT+TGG | - | chr8_1:3182977-3182996 | None:intergenic | 45.0% | |
| CGGGAGTGAAATTGAGGTTA+GGG | - | chr8_1:3182988-3183007 | None:intergenic | 45.0% | |
| ACGGGAGTGAAATTGAGGTT+AGG | - | chr8_1:3182989-3183008 | None:intergenic | 45.0% | |
| TCCCGTAATTCTCAAAAGCG+AGG | + | chr8_1:3183003-3183022 | Msa1172980:CDS | 45.0% | |
| CTTCTGATAGAAACGGATCG+AGG | - | chr8_1:3183058-3183077 | None:intergenic | 45.0% | |
| GTGTGATTGAAGAGACAGTG+AGG | + | chr8_1:3183338-3183357 | Msa1172980:CDS | 45.0% | |
| ! | CCGTTTAAGGAATTGATGGC+TGG | + | chr8_1:3183373-3183392 | Msa1172980:CDS | 45.0% |
| ! | GAATTGATGGCTGGTGCAAT+GGG | + | chr8_1:3183382-3183401 | Msa1172980:CDS | 45.0% |
| ! | TTCATCGTCTGAAACGGTAG+CGG | - | chr8_1:3183448-3183467 | None:intergenic | 45.0% |
| !!! | AGGTTTTGGAGGTGGAGAAT+TGG | + | chr8_1:3183471-3183490 | Msa1172980:CDS | 45.0% |
| !! | TTTTGGAGGTGGAGAATTGG+TGG | + | chr8_1:3183474-3183493 | Msa1172980:CDS | 45.0% |
| GATGAATTGCGTTCAGTTGG+TGG | + | chr8_1:3183586-3183605 | Msa1172980:CDS | 45.0% | |
| !! | GTTGCGGTTGGTGTTAGAAT+TGG | - | chr8_1:3182515-3182534 | None:intergenic | 45.0% |
| ! | ACGTTTGGAATCGGTTGAGT+CGG | - | chr8_1:3182552-3182571 | None:intergenic | 45.0% |
| CGATTCCAAACGTCAACGTT+TGG | + | chr8_1:3182559-3182578 | Msa1172980:CDS | 45.0% | |
| CGTGAATCTTCAACCATAGG+TGG | - | chr8_1:3182605-3182624 | None:intergenic | 45.0% | |
| GACGAGATGGAACTGTTACA+AGG | + | chr8_1:3182656-3182675 | Msa1172980:CDS | 45.0% | |
| CTCGATTACACAACACAGAG+AGG | + | chr8_1:3182683-3182702 | Msa1172980:CDS | 45.0% | |
| GTTGTGAGCAAAATGAGCTC+TGG | + | chr8_1:3182827-3182846 | Msa1172980:CDS | 45.0% | |
| ! | GAGCAAAATGAGCTCTGGTA+AGG | + | chr8_1:3182832-3182851 | Msa1172980:CDS | 45.0% |
| CTTGCGAGAGATTTCAAACG+TGG | - | chr8_1:3182888-3182907 | None:intergenic | 45.0% | |
| ATAGTAACATCACCGGCGAT+TGG | - | chr8_1:3182929-3182948 | None:intergenic | 45.0% | |
| TTGAGGTTAGGGTTAGGACT+TGG | - | chr8_1:3182977-3182996 | None:intergenic | 45.0% | |
| CGGGAGTGAAATTGAGGTTA+GGG | - | chr8_1:3182988-3183007 | None:intergenic | 45.0% | |
| ACGGGAGTGAAATTGAGGTT+AGG | - | chr8_1:3182989-3183008 | None:intergenic | 45.0% | |
| TCCCGTAATTCTCAAAAGCG+AGG | + | chr8_1:3183003-3183022 | Msa1172980:CDS | 45.0% | |
| CTTCTGATAGAAACGGATCG+AGG | - | chr8_1:3183058-3183077 | None:intergenic | 45.0% | |
| GTGTGATTGAAGAGACAGTG+AGG | + | chr8_1:3183338-3183357 | Msa1172980:CDS | 45.0% | |
| ! | CCGTTTAAGGAATTGATGGC+TGG | + | chr8_1:3183373-3183392 | Msa1172980:CDS | 45.0% |
| ! | GAATTGATGGCTGGTGCAAT+GGG | + | chr8_1:3183382-3183401 | Msa1172980:CDS | 45.0% |
| ! | TTCATCGTCTGAAACGGTAG+CGG | - | chr8_1:3183448-3183467 | None:intergenic | 45.0% |
| !!! | AGGTTTTGGAGGTGGAGAAT+TGG | + | chr8_1:3183471-3183490 | Msa1172980:CDS | 45.0% |
| !! | TTTTGGAGGTGGAGAATTGG+TGG | + | chr8_1:3183474-3183493 | Msa1172980:CDS | 45.0% |
| GATGAATTGCGTTCAGTTGG+TGG | + | chr8_1:3183586-3183605 | Msa1172980:CDS | 45.0% | |
| GGAACGGAGATAGAAGCAGA+TGG | - | chr8_1:3182452-3182471 | None:intergenic | 50.0% | |
| !! | GCGGTTGGTGTTAGAATTGG+AGG | - | chr8_1:3182512-3182531 | None:intergenic | 50.0% |
| AAGATGATCGTGGTTGCGGT+TGG | - | chr8_1:3182527-3182546 | None:intergenic | 50.0% | |
| CAGTTCCATCTCGTCTTCGT+CGG | - | chr8_1:3182651-3182670 | None:intergenic | 50.0% | |
| GCGAGGTAAATTCAACCACG+CGG | + | chr8_1:3183020-3183039 | Msa1172980:CDS | 50.0% | |
| ! | GGAATTGATGGCTGGTGCAA+TGG | + | chr8_1:3183381-3183400 | Msa1172980:CDS | 50.0% |
| GGAACGGAGATAGAAGCAGA+TGG | - | chr8_1:3182452-3182471 | None:intergenic | 50.0% | |
| !! | GCGGTTGGTGTTAGAATTGG+AGG | - | chr8_1:3182512-3182531 | None:intergenic | 50.0% |
| AAGATGATCGTGGTTGCGGT+TGG | - | chr8_1:3182527-3182546 | None:intergenic | 50.0% | |
| CAGTTCCATCTCGTCTTCGT+CGG | - | chr8_1:3182651-3182670 | None:intergenic | 50.0% | |
| GCGAGGTAAATTCAACCACG+CGG | + | chr8_1:3183020-3183039 | Msa1172980:CDS | 50.0% | |
| ! | GGAATTGATGGCTGGTGCAA+TGG | + | chr8_1:3183381-3183400 | Msa1172980:CDS | 50.0% |
| GGCGAAGATGATCGTGGTTG+CGG | - | chr8_1:3182531-3182550 | None:intergenic | 55.0% | |
| TGAGTCGGCGAAGATGATCG+TGG | - | chr8_1:3182537-3182556 | None:intergenic | 55.0% | |
| ATGGACCGACGAAGACGAGA+TGG | + | chr8_1:3182643-3182662 | Msa1172980:CDS | 55.0% | |
| TGCGGATCTTCTCAACGAGC+TGG | - | chr8_1:3182784-3182803 | None:intergenic | 55.0% | |
| AGCTCGTTGAGAAGATCCGC+AGG | + | chr8_1:3182783-3182802 | Msa1172980:CDS | 55.0% | |
| AACAACGTAGCGCCAATCGC+CGG | + | chr8_1:3182914-3182933 | Msa1172980:CDS | 55.0% | |
| ACTGCTGGGAATGGTGTAGC+TGG | + | chr8_1:3183316-3183335 | Msa1172980:CDS | 55.0% | |
| ! | TTGATGGCTGGTGCAATGGG+AGG | + | chr8_1:3183385-3183404 | Msa1172980:CDS | 55.0% |
| GCAATGGGAGGAGGACTGTT+TGG | + | chr8_1:3183397-3183416 | Msa1172980:CDS | 55.0% | |
| GGCGAAGATGATCGTGGTTG+CGG | - | chr8_1:3182531-3182550 | None:intergenic | 55.0% | |
| TGAGTCGGCGAAGATGATCG+TGG | - | chr8_1:3182537-3182556 | None:intergenic | 55.0% | |
| ATGGACCGACGAAGACGAGA+TGG | + | chr8_1:3182643-3182662 | Msa1172980:CDS | 55.0% | |
| TGCGGATCTTCTCAACGAGC+TGG | - | chr8_1:3182784-3182803 | None:intergenic | 55.0% | |
| AGCTCGTTGAGAAGATCCGC+AGG | + | chr8_1:3182783-3182802 | Msa1172980:CDS | 55.0% | |
| AACAACGTAGCGCCAATCGC+CGG | + | chr8_1:3182914-3182933 | Msa1172980:CDS | 55.0% | |
| ACTGCTGGGAATGGTGTAGC+TGG | + | chr8_1:3183316-3183335 | Msa1172980:CDS | 55.0% | |
| ! | TTGATGGCTGGTGCAATGGG+AGG | + | chr8_1:3183385-3183404 | Msa1172980:CDS | 55.0% |
| GCAATGGGAGGAGGACTGTT+TGG | + | chr8_1:3183397-3183416 | Msa1172980:CDS | 55.0% | |
| TCTGAGAGCTCCTCCGGGAA+CGG | - | chr8_1:3182489-3182508 | None:intergenic | 60.0% | |
| TGGAGGTCTGAGAGCTCCTC+CGG | - | chr8_1:3182495-3182514 | None:intergenic | 60.0% | |
| !! | CAACCACGCGGAAGCGTTCA+CGG | + | chr8_1:3183032-3183051 | Msa1172980:CDS | 60.0% |
| ATGGCTGGTGCAATGGGAGG+AGG | + | chr8_1:3183388-3183407 | Msa1172980:CDS | 60.0% | |
| GGAGGACTGTTTGGATCGCG+TGG | + | chr8_1:3183406-3183425 | Msa1172980:CDS | 60.0% | |
| TCTGAGAGCTCCTCCGGGAA+CGG | - | chr8_1:3182489-3182508 | None:intergenic | 60.0% | |
| TGGAGGTCTGAGAGCTCCTC+CGG | - | chr8_1:3182495-3182514 | None:intergenic | 60.0% | |
| !! | CAACCACGCGGAAGCGTTCA+CGG | + | chr8_1:3183032-3183051 | Msa1172980:CDS | 60.0% |
| ATGGCTGGTGCAATGGGAGG+AGG | + | chr8_1:3183388-3183407 | Msa1172980:CDS | 60.0% | |
| GGAGGACTGTTTGGATCGCG+TGG | + | chr8_1:3183406-3183425 | Msa1172980:CDS | 60.0% | |
| GGAGGTCTGAGAGCTCCTCC+GGG | - | chr8_1:3182494-3182513 | None:intergenic | 65.0% | |
| GGAGGTCTGAGAGCTCCTCC+GGG | - | chr8_1:3182494-3182513 | None:intergenic | 65.0% | |
| !! | GGCGACGGTGACGGAGGGAA+CGG | - | chr8_1:3182468-3182487 | None:intergenic | 70.0% |
| !! | GGAACGGCGACGGTGACGGA+GGG | - | chr8_1:3182473-3182492 | None:intergenic | 70.0% |
| TCCGTCACCGTCGCCGTTCC+CGG | + | chr8_1:3182473-3182492 | Msa1172980:CDS | 70.0% | |
| TCCGGGAACGGCGACGGTGA+CGG | - | chr8_1:3182477-3182496 | None:intergenic | 70.0% | |
| AGCTCCTCCGGGAACGGCGA+CGG | - | chr8_1:3182483-3182502 | None:intergenic | 70.0% | |
| AGGCCGTGAACGCTTCCGCG+TGG | - | chr8_1:3183038-3183057 | None:intergenic | 70.0% | |
| !! | GGCGACGGTGACGGAGGGAA+CGG | - | chr8_1:3182468-3182487 | None:intergenic | 70.0% |
| !! | GGAACGGCGACGGTGACGGA+GGG | - | chr8_1:3182473-3182492 | None:intergenic | 70.0% |
| TCCGTCACCGTCGCCGTTCC+CGG | + | chr8_1:3182473-3182492 | Msa1172980:CDS | 70.0% | |
| TCCGGGAACGGCGACGGTGA+CGG | - | chr8_1:3182477-3182496 | None:intergenic | 70.0% | |
| AGCTCCTCCGGGAACGGCGA+CGG | - | chr8_1:3182483-3182502 | None:intergenic | 70.0% | |
| AGGCCGTGAACGCTTCCGCG+TGG | - | chr8_1:3183038-3183057 | None:intergenic | 70.0% | |
| ! | GGGAACGGCGACGGTGACGG+AGG | - | chr8_1:3182474-3182493 | None:intergenic | 75.0% |
| GTCACCGTCGCCGTTCCCGG+AGG | + | chr8_1:3182476-3182495 | Msa1172980:CDS | 75.0% | |
| ! | GGGAACGGCGACGGTGACGG+AGG | - | chr8_1:3182474-3182493 | None:intergenic | 75.0% |
| GTCACCGTCGCCGTTCCCGG+AGG | + | chr8_1:3182476-3182495 | Msa1172980:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 3182317 | 3183624 | 3182317 | ID=Msa1172980;Name=Msa1172980 |
| chr8_1 | mRNA | 3182317 | 3183624 | 3182317 | ID=Msa1172980-mRNA-1;Parent=Msa1172980;Name=Msa1172980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|435 |
| chr8_1 | exon | 3182317 | 3183624 | 3182317 | ID=Msa1172980-mRNA-1:exon:1089;Parent=Msa1172980-mRNA-1 |
| chr8_1 | CDS | 3182317 | 3183624 | 3182317 | ID=Msa1172980-mRNA-1:cds;Parent=Msa1172980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
