AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1129540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129540 MtrunA17_Chr7g0274311 96.571 875 26 3 1 873 1 873 0.0 1727
Msa1129540 MtrunA17_Chr1g0184441 33.814 763 394 26 10 726 14 711 2.35e-90 305
Msa1129540 MtrunA17_Chr5g0434681 34.536 388 229 8 504 866 578 965 4.15e-32 134
Msa1129540 MtrunA17_Chr5g0434681 37.975 158 75 3 19 168 16 158 6.22e-26 115
Msa1129540 MtrunA17_Chr8g0376151 57.143 133 54 2 506 635 563 695 2.94e-29 125
Msa1129540 MtrunA17_Chr8g0376151 47.887 71 36 1 43 112 40 110 1.43e-14 78.2
Msa1129540 MtrunA17_Chr3g0093241 30.859 256 136 11 28 269 25 253 7.27e-24 106
Msa1129540 MtrunA17_Chr3g0093241 60.000 100 40 0 537 636 331 430 1.85e-22 102
Msa1129540 MtrunA17_Chr4g0059771 34.615 156 92 4 24 170 21 175 5.16e-21 97.8
Msa1129540 MtrunA17_Chr4g0059771 52.846 123 58 0 514 636 306 428 2.37e-18 89.4
Msa1129540 MtrunA17_Chr2g0307041 38.889 108 62 1 529 636 12 115 1.73e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1129540 AT1G08800.2 43.553 349 150 6 414 759 766 1070 4.20e-70 252
Msa1129540 AT1G08800.2 44.737 228 103 8 18 242 4 211 1.05e-42 169
Msa1129540 AT1G08800.4 43.553 349 150 6 414 759 766 1070 4.20e-70 252
Msa1129540 AT1G08800.4 44.737 228 103 8 18 242 4 211 1.05e-42 169
Msa1129540 AT1G08800.3 43.553 349 150 6 414 759 766 1070 4.20e-70 252
Msa1129540 AT1G08800.3 44.737 228 103 8 18 242 4 211 1.05e-42 169
Msa1129540 AT1G08800.1 43.553 349 150 6 414 759 766 1070 4.20e-70 252
Msa1129540 AT1G08800.1 44.737 228 103 8 18 242 4 211 1.05e-42 169
Msa1129540 AT2G30690.1 66.949 118 39 0 526 643 602 719 3.90e-41 162
Msa1129540 AT2G30690.1 34.728 239 126 9 24 253 19 236 2.64e-28 122
Msa1129540 AT2G30690.2 66.949 118 39 0 526 643 602 719 3.90e-41 162
Msa1129540 AT2G30690.2 34.728 239 126 9 24 253 19 236 2.64e-28 122
Msa1129540 AT1G70750.1 32.178 404 227 12 485 868 365 741 1.54e-35 145
Msa1129540 AT1G70750.1 40.566 106 54 3 19 116 16 120 2.17e-14 77.8
Msa1129540 AT5G16720.1 31.467 375 202 10 509 863 322 661 8.14e-29 123
Msa1129540 AT5G16720.1 30.088 226 109 6 1 214 1 189 1.92e-22 103
Msa1129540 AT1G74830.1 54.867 113 51 0 524 636 289 401 5.79e-24 107
Msa1129540 AT1G74830.1 34.706 170 87 5 24 170 40 208 6.52e-23 104
Msa1129540 AT1G18990.1 57.547 106 45 0 531 636 295 400 5.07e-22 101
Msa1129540 AT1G18990.1 44.681 94 47 3 41 133 41 130 4.19e-15 79.7
Msa1129540 AT5G06560.1 28.054 221 136 3 475 683 20 229 1.94e-14 77.4
Msa1129540 AT4G13630.2 37.956 137 84 1 508 644 194 329 2.29e-13 74.3
Msa1129540 AT4G13630.1 37.956 137 84 1 508 644 194 329 2.29e-13 74.3
Msa1129540 AT3G54740.3 33.088 136 82 2 548 674 82 217 2.62e-11 67.4
Msa1129540 AT3G54740.6 33.088 136 82 2 548 674 82 217 2.62e-11 67.4
Msa1129540 AT3G54740.2 33.088 136 82 2 548 674 82 217 2.62e-11 67.4
Msa1129540 AT3G54740.5 33.088 136 82 2 548 674 82 217 2.62e-11 67.4
Msa1129540 AT3G54740.8 33.088 136 82 2 548 674 34 169 3.43e-11 66.6
Msa1129540 AT3G54740.1 33.088 136 82 2 548 674 34 169 3.43e-11 66.6
Msa1129540 AT3G54740.7 33.088 136 82 2 548 674 34 169 3.43e-11 66.6
Msa1129540 AT3G54740.4 33.088 136 82 2 548 674 34 169 3.43e-11 66.6

Find 182 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGAACGTTTGAAGAAAT+TGG 0.165586 7_3:+81495016 Msa1129540:CDS
ACAGAAAAGAGGTTATTATT+TGG 0.203314 7_3:+81492793 Msa1129540:CDS
TCATCCAGGTTACAAGAAAA+TGG 0.214605 7_3:+81496715 Msa1129540:three_prime_UTR
ATGAAGTTTCATCTTCTTCT+AGG 0.218327 7_3:+81492591 Msa1129540:CDS
CTTGCAAACTGGAGGTTTCT+TGG 0.222572 7_3:-81495216 None:intergenic
TCAGCTTTGTCATAGATATT+AGG 0.235113 7_3:-81494909 None:intergenic
GAACTAACATTGTTTGTATA+TGG 0.240257 7_3:+81496946 Msa1129540:three_prime_UTR
GCTGTTGATTTCAATGATTC+AGG 0.244211 7_3:+81493136 Msa1129540:CDS
TCACCAAGATCTAGCAAATT+AGG 0.270537 7_3:-81494141 None:intergenic
TATACCGTCATCATCTGATA+TGG 0.279522 7_3:-81493314 None:intergenic
CTCACCAGTCTCAGGATAAT+TGG 0.280875 7_3:+81495066 Msa1129540:CDS
CCGGCTATTGCTTGGTAAAT+CGG 0.294179 7_3:+81492961 Msa1129540:CDS
AAGAGTTCCATGTGAATATA+TGG 0.311089 7_3:+81493378 Msa1129540:CDS
TGTTCAATGTACCTTCTTCC+TGG 0.317551 7_3:-81496635 None:intergenic
GTTGCTTGAGGATGTATATA+AGG 0.322444 7_3:+81495488 Msa1129540:exon
TGATTTGACTAGAAAGAATA+TGG 0.323167 7_3:+81492559 Msa1129540:exon
TTTAGCTTCTACTGGAAGTT+TGG 0.323708 7_3:+81495298 Msa1129540:CDS
CAAAGTAAACCAACCCAAAA+AGG 0.332256 7_3:-81492223 None:intergenic
CCTGAGACTGGTGAGAATTC+AGG 0.333607 7_3:-81495058 None:intergenic
CTTGTTGTAGTGAGAAATTC+CGG 0.335872 7_3:+81493062 Msa1129540:CDS
TTCGCTATTCATAGACAATC+TGG 0.336016 7_3:-81494328 None:intergenic
GAAATGAAGGTAAAAGATAT+TGG 0.340452 7_3:+81494825 Msa1129540:CDS
AATCCTAATTTGCTAGATCT+TGG 0.352539 7_3:+81494138 Msa1129540:CDS
AATCCAATGCCGAGACTTCC+CGG 0.360389 7_3:+81492942 Msa1129540:CDS
GGAACATCGTTGAAGGAAAT+AGG 0.362320 7_3:-81493622 None:intergenic
CCTCCAGTTTGCAAGCAAAA+TGG 0.367530 7_3:+81495224 Msa1129540:CDS
TGGCTTCAGCTTTACTTGAA+TGG 0.372014 7_3:+81492648 Msa1129540:CDS
TACATTGAACAACGGTGAAC+CGG 0.373745 7_3:+81496647 Msa1129540:three_prime_UTR
TGATACTGAGTCTGAATTTG+AGG 0.377119 7_3:+81493288 Msa1129540:CDS
GTATCATCTTTCCCGTGAAT+TGG 0.379249 7_3:-81493343 None:intergenic
TTCTCCGGCTTTGATTCGTC+AGG 0.388551 7_3:-81494783 None:intergenic
GATAATGATTTAGCTTCTAC+TGG 0.392018 7_3:+81495290 Msa1129540:CDS
TGGAAGCCTTGCAGCACTTA+AGG 0.395831 7_3:+81494637 Msa1129540:CDS
GACGAAACCGAATCTTTCAT+TGG 0.397908 7_3:-81495152 None:intergenic
TGAAGGACTTAAGTTATTGC+AGG 0.398234 7_3:+81495406 Msa1129540:CDS
CAAAAGAATTACAACATCAT+TGG 0.399339 7_3:+81492628 Msa1129540:CDS
CGATCCTGCGTAATTGTTGC+AGG 0.399676 7_3:-81495442 None:intergenic
GATATTGCTGTCACAATTCT+CGG 0.403853 7_3:+81494266 Msa1129540:CDS
TCTTCCTGGTGGCTAATCAT+TGG 0.407216 7_3:-81496621 None:intergenic
AAATATTCCAATGAAAGATT+CGG 0.408471 7_3:+81495145 Msa1129540:CDS
TTGCCAAGTCAATTCGGTCT+AGG 0.416167 7_3:+81493113 Msa1129540:CDS
CCTGAATTCTCACCAGTCTC+AGG 0.416604 7_3:+81495058 Msa1129540:CDS
CTTGGTCAACATACAGTTGC+CGG 0.419687 7_3:+81493031 Msa1129540:CDS
AAACGAATCTGGTTTGTCTC+TGG 0.419823 7_3:+81494422 Msa1129540:CDS
ATCTGCACAAAGTTTACAAA+TGG 0.427450 7_3:+81494968 Msa1129540:CDS
CGGCTATTGCTTGGTAAATC+GGG 0.428787 7_3:+81492962 Msa1129540:CDS
TGCTTGCAGAACATTGGCTT+GGG 0.429540 7_3:+81494211 Msa1129540:CDS
CACTAGACTGCAGGAAGAAA+AGG 0.433393 7_3:+81494602 Msa1129540:CDS
AAGCTAGCTGTCAGTAATAG+AGG 0.434545 7_3:+81494171 Msa1129540:CDS
AAAACATTAAGTCAGGCAAT+AGG 0.437389 7_3:+81494055 Msa1129540:CDS
TCGCTTGAGAGAAACGAATC+TGG 0.438552 7_3:+81494411 Msa1129540:CDS
TTTGATCATGATCCATTACT+TGG 0.440915 7_3:+81493013 Msa1129540:CDS
TGCCAAGTCAATTCGGTCTA+GGG 0.447748 7_3:+81493114 Msa1129540:CDS
TGAAGGAAATAGGCTCGCTT+GGG 0.448680 7_3:-81493612 None:intergenic
TGAGCAGTCAGAATATGAAT+TGG 0.448855 7_3:+81494668 Msa1129540:CDS
AGCTGAAGTCCCGGGCTTTG+TGG 0.451904 7_3:-81493437 None:intergenic
AGAAAAGGCAACGTTACATA+TGG 0.453577 7_3:+81494617 Msa1129540:CDS
TTCCTGCAGTCTAGTGATCA+TGG 0.454535 7_3:-81494595 None:intergenic
TGGTATTTGCCAAGTCAATT+CGG 0.455380 7_3:+81493107 Msa1129540:CDS
TCTGATGTTACTAACTCTAC+TGG 0.457443 7_3:+81494363 Msa1129540:CDS
GATAAGCTTGTAAATATTCA+AGG 0.459464 7_3:+81492875 Msa1129540:CDS
CCCAGAAAACTCGGAAAAGT+TGG 0.461420 7_3:+81495118 Msa1129540:CDS
TTGAAGGAAATAGGCTCGCT+TGG 0.461485 7_3:-81493613 None:intergenic
CTGGCATGCTTGCAGAACAT+TGG 0.461821 7_3:+81494205 Msa1129540:CDS
AGTGAGAAATTCCGGTTAGA+TGG 0.461919 7_3:+81493070 Msa1129540:CDS
TGCAACAATTACGCAGGATC+GGG 0.464888 7_3:+81495444 Msa1129540:CDS
TTCATTGAAAATGATGAAAG+TGG 0.465627 7_3:+81494870 Msa1129540:CDS
TAGTATGCTCAAGGAAACTA+TGG 0.465704 7_3:-81495361 None:intergenic
CATCCAGGTTACAAGAAAAT+GGG 0.466838 7_3:+81496716 Msa1129540:three_prime_UTR
AGAAGAAGATGAAACTTCAT+TGG 0.468520 7_3:-81492588 None:intergenic
AGGCTAATAACATCTGAAAC+AGG 0.470919 7_3:+81494075 Msa1129540:CDS
TTATACTTCTTGTTCATCTA+CGG 0.471121 7_3:+81492321 Msa1129540:five_prime_UTR
GCAACAGTGGAAAGTGGAAA+TGG 0.471975 7_3:+81493538 Msa1129540:CDS
TGGAACTCTTATATCTTCCT+TGG 0.473060 7_3:-81493365 None:intergenic
TATATACATCCTCAAGCAAC+AGG 0.475282 7_3:-81495485 None:intergenic
TTTGATCATGACCATCTAAC+CGG 0.477980 7_3:-81493081 None:intergenic
CTGGAGGTTTCTTGGATGAC+GGG 0.481779 7_3:-81495208 None:intergenic
CTCTCAAACTCAAGGAAACA+AGG 0.481916 7_3:-81496995 None:intergenic
TGACATTCAACTCATGTCTT+CGG 0.483737 7_3:+81494929 Msa1129540:CDS
CAAATTAAATTCAGATGCCA+TGG 0.486577 7_3:+81495178 Msa1129540:CDS
TCTGTTATATTTGATAATGT+AGG 0.487402 7_3:-81493643 None:intergenic
TTCAATGATTCAGGTGTTGT+TGG 0.491677 7_3:+81493145 Msa1129540:CDS
CCGATTTACCAAGCAATAGC+CGG 0.492472 7_3:-81492961 None:intergenic
GAGACTTCCCGGCTATTGCT+TGG 0.492566 7_3:+81492953 Msa1129540:CDS
CGTGAAGAAAACATTAAGTC+AGG 0.493949 7_3:+81494048 Msa1129540:CDS
GTTAGAAGACTTAGAAGCAA+AGG 0.496945 7_3:+81494737 Msa1129540:CDS
TGACACGTATCAGTAGAAAC+CGG 0.499725 7_3:-81494111 None:intergenic
TAGATCTTCATTAACTCTTG+AGG 0.503418 7_3:-81494241 None:intergenic
AATAGAGGAAGACAGTTGTC+TGG 0.503500 7_3:+81494186 Msa1129540:CDS
CGAATCAAAGCCGGAGAACA+TGG 0.504178 7_3:+81494788 Msa1129540:CDS
GAATGCTTTGTATAAAGAGC+TGG 0.504412 7_3:+81494527 Msa1129540:CDS
AGATGGTCATGATCAAAGTC+TGG 0.504424 7_3:+81493087 Msa1129540:CDS
TAATTCTGAAAATGTTGTAA+AGG 0.509055 7_3:+81495091 Msa1129540:CDS
AAGTACAGAAGCTGAAGTCC+CGG 0.510760 7_3:-81493446 None:intergenic
AAGCAATAGCCGGGAAGTCT+CGG 0.512519 7_3:-81492951 None:intergenic
ATGGTTTGACAGAACTTGAC+TGG 0.512573 7_3:+81493557 Msa1129540:CDS
AGCCATGATCACTAGACTGC+AGG 0.513907 7_3:+81494593 Msa1129540:CDS
TAGCCGGGAAGTCTCGGCAT+TGG 0.516845 7_3:-81492945 None:intergenic
TAATGTAGGAACATCGTTGA+AGG 0.518278 7_3:-81493629 None:intergenic
GATCTGACTTCCACAAAGCC+CGG 0.519046 7_3:+81493427 Msa1129540:CDS
ACTTTCCACTGTTGCTTCTG+CGG 0.522511 7_3:-81493530 None:intergenic
AAAGACAAGTTGATCATGAC+AGG 0.522780 7_3:+81494496 Msa1129540:CDS
ATACCGTCATCATCTGATAT+GGG 0.526049 7_3:-81493313 None:intergenic
ATGCTTGCAGAACATTGGCT+TGG 0.526665 7_3:+81494210 Msa1129540:CDS
GAAGGTAAAAGATATTGGAT+TGG 0.527224 7_3:+81494830 Msa1129540:CDS
CTGCAACAATTACGCAGGAT+CGG 0.529463 7_3:+81495443 Msa1129540:CDS
ATGATTAGCCACCAGGAAGA+AGG 0.533932 7_3:+81496624 Msa1129540:three_prime_UTR
ACTGGAGGTTTCTTGGATGA+CGG 0.535900 7_3:-81495209 None:intergenic
AATGGTGAACTTGAATACTC+TGG 0.536752 7_3:+81495242 Msa1129540:CDS
CTTGCAGCACTTAAGGATGA+TGG 0.540707 7_3:+81494644 Msa1129540:CDS
TCGCTATTCATAGACAATCT+GGG 0.542836 7_3:-81494327 None:intergenic
TGTACAGTTGCAACCAGTCA+TGG 0.548541 7_3:-81496675 None:intergenic
TAATGACCTACTTGCTGAGA+GGG 0.548758 7_3:+81494707 Msa1129540:CDS
CGATTTACCAAGCAATAGCC+GGG 0.554396 7_3:-81492960 None:intergenic
TCACAATTCTCGGCCACTCG+AGG 0.559052 7_3:+81494276 Msa1129540:CDS
TAGGCCAATTATCCTGAGAC+TGG 0.559585 7_3:-81495070 None:intergenic
GAATCTGGTTTGTCTCTGGA+TGG 0.560438 7_3:+81494426 Msa1129540:CDS
AGTACAGAAGCTGAAGTCCC+GGG 0.563633 7_3:-81493445 None:intergenic
GGTATAAGTATACCAATTCA+CGG 0.564865 7_3:+81493331 Msa1129540:CDS
AGTGCCTGTTGAAGTATCAA+AGG 0.565324 7_3:+81493666 Msa1129540:CDS
GCAGAAGCAACAGTGGAAAG+TGG 0.566398 7_3:+81493532 Msa1129540:CDS
GTAAGTTGATAGTATGCTCA+AGG 0.567019 7_3:-81495370 None:intergenic
ACTACAACAAGAACAGTGTC+CGG 0.568490 7_3:-81493050 None:intergenic
ATCTGACTTCCACAAAGCCC+GGG 0.569306 7_3:+81493428 Msa1129540:CDS
TGAAAGGTTACAAGCTCTTG+AGG 0.569707 7_3:+81495334 Msa1129540:CDS
GCAACCAGTCATGGTTTACC+CGG 0.572413 7_3:-81496666 None:intergenic
TGATATTGAAGGTGAAAGCC+CGG 0.574698 7_3:+81494461 Msa1129540:CDS
CCTACTTGCTGAGAGGGAGA+AGG 0.576111 7_3:+81494713 Msa1129540:CDS
AGCCCTAGACCGAATTGACT+TGG 0.576455 7_3:-81493116 None:intergenic
CACAATTCTCGGCCACTCGA+GGG 0.576714 7_3:+81494277 Msa1129540:CDS
GAAATAGGCTCGCTTGGGGA+CGG 0.578388 7_3:-81493607 None:intergenic
ACATTGAACAACGGTGAACC+GGG 0.578467 7_3:+81496648 Msa1129540:three_prime_UTR
TGAGTTCTGTGTAGCCTACA+CGG 0.579088 7_3:-81493255 None:intergenic
ACTGTATGTTGACCAAGTAA+TGG 0.581030 7_3:-81493025 None:intergenic
GACACGTATCAGTAGAAACC+GGG 0.582482 7_3:-81494110 None:intergenic
GTATAAGTATACCAATTCAC+GGG 0.584196 7_3:+81493332 Msa1129540:CDS
CCTTCTCCCTCTCAGCAAGT+AGG 0.587122 7_3:-81494713 None:intergenic
TCTCCGGCTTTGATTCGTCA+GGG 0.587366 7_3:-81494782 None:intergenic
ATAGATCAACCTGTTGCTTG+AGG 0.588877 7_3:+81495476 Msa1129540:CDS
TGAACCGGGTAAACCATGAC+TGG 0.590111 7_3:+81496662 Msa1129540:three_prime_UTR
TTACTGAGCGATGGAGGTGA+AGG 0.590371 7_3:+81495389 Msa1129540:CDS
ACTATCAACTTACTGAGCGA+TGG 0.590607 7_3:+81495380 Msa1129540:CDS
ACAATAGCTTGATATCATCC+AGG 0.590922 7_3:+81496701 Msa1129540:three_prime_UTR
ATTCCCTGACGAATCAAAGC+CGG 0.593550 7_3:+81494779 Msa1129540:CDS
AAAGGAATACCCAGAAAACT+CGG 0.594276 7_3:+81495109 Msa1129540:CDS
TATACCAATGATTAGCCACC+AGG 0.595001 7_3:+81496617 Msa1129540:three_prime_UTR
TCAATGTACCTTCTTCCTGG+TGG 0.595257 7_3:-81496632 None:intergenic
GGCATTGGATTTATCGACGA+CGG 0.602158 7_3:-81492930 None:intergenic
AAGTTTCATCTTCTTCTAGG+TGG 0.605634 7_3:+81492594 Msa1129540:CDS
AACGTTTGAAGAAATTGGAG+AGG 0.616380 7_3:+81495021 Msa1129540:CDS
GCGGATCCTTTGTCCCGTGT+AGG 0.618911 7_3:+81493241 Msa1129540:CDS
ATCAACTTACTGAGCGATGG+AGG 0.624710 7_3:+81495383 Msa1129540:CDS
CATGACTCCTCTGTTCTATG+TGG 0.625515 7_3:+81495266 Msa1129540:CDS
TAAAACCGCAGAAGCAACAG+TGG 0.628074 7_3:+81493525 Msa1129540:CDS
GAGTTCTGTGTAGCCTACAC+GGG 0.628936 7_3:-81493254 None:intergenic
ATCGCCTGCAACAATTACGC+AGG 0.632228 7_3:+81495438 Msa1129540:CDS
CAAAGCTCCATATATTCACA+TGG 0.633331 7_3:-81493385 None:intergenic
CATCATCCTTAAGTGCTGCA+AGG 0.634038 7_3:-81494643 None:intergenic
AACAGGTTTAGAACCAACCC+CGG 0.634266 7_3:+81494092 Msa1129540:CDS
TCTCAAACTCAAGGAAACAA+GGG 0.635400 7_3:-81496994 None:intergenic
AGCCTTGAACAAAACAAGCA+TGG 0.635478 7_3:-81492752 None:intergenic
GTGTAGCCTACACGGGACAA+AGG 0.635719 7_3:-81493247 None:intergenic
CTGTATCATTCAGAGATGCA+CGG 0.636931 7_3:+81493203 Msa1129540:CDS
TGCTTTGTATAAAGAGCTGG+AGG 0.640545 7_3:+81494530 Msa1129540:CDS
AAATGCAGCAAAATGTCCCA+AGG 0.643148 7_3:-81496792 None:intergenic
TGAATAATAATTGCAATGAG+TGG 0.646420 7_3:+81496868 Msa1129540:three_prime_UTR
GAAGGAAATAGGCTCGCTTG+GGG 0.648938 7_3:-81493611 None:intergenic
AGCATTGTCAGTGATATTGA+AGG 0.649510 7_3:+81494450 Msa1129540:CDS
TTGCAGTGTTGATTCAACTG+AGG 0.652343 7_3:+81493405 Msa1129540:CDS
AGACATATCAGTCCCTCGAG+TGG 0.652981 7_3:-81494289 None:intergenic
GGATGACGGGTCATCAACCA+TGG 0.660163 7_3:-81495195 None:intergenic
GCATCTCTGAATGATACAGA+CGG 0.662265 7_3:-81493199 None:intergenic
TCACGGGAAAGATGATACCA+AGG 0.663255 7_3:+81493348 Msa1129540:CDS
CTAATGACCTACTTGCTGAG+AGG 0.665280 7_3:+81494706 Msa1129540:CDS
GTTCCCATATCAGATGATGA+CGG 0.684913 7_3:+81493310 Msa1129540:CDS
ATTATCTCCACATAGAACAG+AGG 0.694773 7_3:-81495273 None:intergenic
ATCAAAGCCGGAGAACATGG+TGG 0.695580 7_3:+81494791 Msa1129540:CDS
ACGGCTGAGAAATGATCATG+CGG 0.699329 7_3:+81493222 Msa1129540:CDS
GTATCAGTAGAAACCGGGGT+TGG 0.722796 7_3:-81494105 None:intergenic
ACTCGTGGTTCTGACAACAA+TGG 0.724092 7_3:-81493472 None:intergenic
GAAGAAGGTACATTGAACAA+CGG 0.737169 7_3:+81496639 Msa1129540:three_prime_UTR
ACACGTATCAGTAGAAACCG+GGG 0.749513 7_3:-81494109 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTTATAATAGATTATTT+GGG - chr7_3:81493817-81493836 None:intergenic 10.0%
!! TACATTTATAATAGATTATT+TGG - chr7_3:81493818-81493837 None:intergenic 10.0%
!! AAATAATCTATTATAAATGT+AGG + chr7_3:81493817-81493836 Msa1129540:intron 10.0%
!!! TACATTGATAATTTATATTT+TGG + chr7_3:81495782-81495801 Msa1129540:intron 10.0%
!! ATTCTATATCATTTAAGAAA+TGG - chr7_3:81493947-81493966 None:intergenic 15.0%
!!! ATTTATATTTTGGTTTTTTG+AGG + chr7_3:81495792-81495811 Msa1129540:intron 15.0%
!!! GATTTTAACTTCATATATAA+TGG - chr7_3:81496374-81496393 None:intergenic 15.0%
!! ATAAGATTATTTAATAGACA+CGG + chr7_3:81496526-81496545 Msa1129540:intron 15.0%
!!! CAATTATTATTCATTTTACA+AGG - chr7_3:81496861-81496880 None:intergenic 15.0%
!!! ACTTCTTTTTAATTCTTTTG+CGG - chr7_3:81492198-81492217 None:intergenic 20.0%
!!! AAAAGAAGTTTAAACCTTTT+TGG + chr7_3:81492209-81492228 Msa1129540:five_prime_UTR 20.0%
!!! AAAGAAGTTTAAACCTTTTT+GGG + chr7_3:81492210-81492229 Msa1129540:five_prime_UTR 20.0%
!! TGAGGATTAATTATTATTAC+AGG - chr7_3:81492388-81492407 None:intergenic 20.0%
!! AATAAGAAAAAGAAGTTATG+AGG - chr7_3:81492406-81492425 None:intergenic 20.0%
!!! TTAGTTTAGTTTGTATAAAC+AGG - chr7_3:81492448-81492467 None:intergenic 20.0%
!!! TCTGTTATATTTGATAATGT+AGG - chr7_3:81493646-81493665 None:intergenic 20.0%
!!! GATTTTTCAACTGTATAAAA+AGG - chr7_3:81493859-81493878 None:intergenic 20.0%
!!! AGATATTAGGATTTGATTTT+CGG - chr7_3:81494899-81494918 None:intergenic 20.0%
!!! TTTACAACATTTTCAGAATT+AGG - chr7_3:81495092-81495111 None:intergenic 20.0%
!!! TAATTCTGAAAATGTTGTAA+AGG + chr7_3:81495091-81495110 Msa1129540:CDS 20.0%
!! AAATATTCCAATGAAAGATT+CGG + chr7_3:81495145-81495164 Msa1129540:CDS 20.0%
!!! TTTTAAAAATGACTAAAGAG+TGG - chr7_3:81495554-81495573 None:intergenic 20.0%
!! AATAAAACACTTTATTCTCA+AGG + chr7_3:81495660-81495679 Msa1129540:intron 20.0%
!! ATTATCAATGTATCATTACA+GGG - chr7_3:81495774-81495793 None:intergenic 20.0%
!! AATTATCAATGTATCATTAC+AGG - chr7_3:81495775-81495794 None:intergenic 20.0%
!!! TTATTCAAGTTTAGAGAAAA+AGG + chr7_3:81495868-81495887 Msa1129540:intron 20.0%
!!! ATTAATTTTTCTTTGCTAGT+CGG - chr7_3:81496290-81496309 None:intergenic 20.0%
!! AGAAAAATTAATGTATGAAC+TGG + chr7_3:81496298-81496317 Msa1129540:intron 20.0%
!!! AACAGTCGTTATTTAAATTT+TGG - chr7_3:81496350-81496369 None:intergenic 20.0%
!!! TATATGGCTTTTATTTTATG+TGG + chr7_3:81496962-81496981 Msa1129540:three_prime_UTR 20.0%
! TTATACTTCTTGTTCATCTA+CGG + chr7_3:81492321-81492340 Msa1129540:five_prime_UTR 25.0%
! TGATTTGACTAGAAAGAATA+TGG + chr7_3:81492559-81492578 Msa1129540:exon 25.0%
! CAAAAGAATTACAACATCAT+TGG + chr7_3:81492628-81492647 Msa1129540:CDS 25.0%
! ACAGAAAAGAGGTTATTATT+TGG + chr7_3:81492793-81492812 Msa1129540:CDS 25.0%
! GATAAGCTTGTAAATATTCA+AGG + chr7_3:81492875-81492894 Msa1129540:CDS 25.0%
! TCATTTAAGAAATGGAGAAA+AGG - chr7_3:81493939-81493958 None:intergenic 25.0%
! GAAATGAAGGTAAAAGATAT+TGG + chr7_3:81494825-81494844 Msa1129540:CDS 25.0%
! TTCATTGAAAATGATGAAAG+TGG + chr7_3:81494870-81494889 Msa1129540:CDS 25.0%
!!! ATATTAGGATTTGATTTTCG+GGG - chr7_3:81494897-81494916 None:intergenic 25.0%
!!! GATATTAGGATTTGATTTTC+GGG - chr7_3:81494898-81494917 None:intergenic 25.0%
!! TGGTTTCAGATTTTATTGAA+AGG + chr7_3:81495318-81495337 Msa1129540:CDS 25.0%
!!! CTATTTTAGCATATTGAGTA+TGG + chr7_3:81495595-81495614 Msa1129540:intron 25.0%
!! AAATTTTCCCTTACTTATCT+TGG - chr7_3:81495636-81495655 None:intergenic 25.0%
!!! TATATTTTGGTTTTTTGAGG+AGG + chr7_3:81495795-81495814 Msa1129540:intron 25.0%
! AAATCGTGTAAGAACATATT+CGG + chr7_3:81496024-81496043 Msa1129540:intron 25.0%
!! TCAGTTAACGAAATTTTCTA+GGG - chr7_3:81496163-81496182 None:intergenic 25.0%
! GTAATTACGAATATGAAGTT+TGG - chr7_3:81496220-81496239 None:intergenic 25.0%
! AATTAATGTATGAACTGGTT+TGG + chr7_3:81496303-81496322 Msa1129540:intron 25.0%
! TGAATAATAATTGCAATGAG+TGG + chr7_3:81496868-81496887 Msa1129540:three_prime_UTR 25.0%
! GAACTAACATTGTTTGTATA+TGG + chr7_3:81496946-81496965 Msa1129540:three_prime_UTR 25.0%
!!! AAGTTTAAACCTTTTTGGGT+TGG + chr7_3:81492214-81492233 Msa1129540:five_prime_UTR 30.0%
AGAAGAAGATGAAACTTCAT+TGG - chr7_3:81492591-81492610 None:intergenic 30.0%
ATGAAGTTTCATCTTCTTCT+AGG + chr7_3:81492591-81492610 Msa1129540:CDS 30.0%
TTTGATCATGATCCATTACT+TGG + chr7_3:81493013-81493032 Msa1129540:CDS 30.0%
GGTATAAGTATACCAATTCA+CGG + chr7_3:81493331-81493350 Msa1129540:CDS 30.0%
GTATAAGTATACCAATTCAC+GGG + chr7_3:81493332-81493351 Msa1129540:CDS 30.0%
AAGAGTTCCATGTGAATATA+TGG + chr7_3:81493378-81493397 Msa1129540:CDS 30.0%
! TTTTCCTTTGATACTTCAAC+AGG - chr7_3:81493673-81493692 None:intergenic 30.0%
TTTCTTTACCATGTAATGCA+TGG + chr7_3:81493718-81493737 Msa1129540:intron 30.0%
! CTGACTTAATGTTTTCTTCA+CGG - chr7_3:81494050-81494069 None:intergenic 30.0%
AAAACATTAAGTCAGGCAAT+AGG + chr7_3:81494055-81494074 Msa1129540:CDS 30.0%
!! AATCCTAATTTGCTAGATCT+TGG + chr7_3:81494138-81494157 Msa1129540:CDS 30.0%
TAGATCTTCATTAACTCTTG+AGG - chr7_3:81494244-81494263 None:intergenic 30.0%
!! AAGCAAAGGTTGAGTTTTAT+AGG + chr7_3:81494751-81494770 Msa1129540:CDS 30.0%
GAAGGTAAAAGATATTGGAT+TGG + chr7_3:81494830-81494849 Msa1129540:CDS 30.0%
!! TATTAGGATTTGATTTTCGG+GGG - chr7_3:81494896-81494915 None:intergenic 30.0%
! TCAGCTTTGTCATAGATATT+AGG - chr7_3:81494912-81494931 None:intergenic 30.0%
ATCTGCACAAAGTTTACAAA+TGG + chr7_3:81494968-81494987 Msa1129540:CDS 30.0%
TTCTGAACGTTTGAAGAAAT+TGG + chr7_3:81495016-81495035 Msa1129540:CDS 30.0%
CAAATTAAATTCAGATGCCA+TGG + chr7_3:81495178-81495197 Msa1129540:CDS 30.0%
! GATAATGATTTAGCTTCTAC+TGG + chr7_3:81495290-81495309 Msa1129540:CDS 30.0%
AAACACTTTATTCTCAAGGT+TGG + chr7_3:81495664-81495683 Msa1129540:intron 30.0%
ATTGAGTGAAGTCTTCTTTA+AGG + chr7_3:81495950-81495969 Msa1129540:intron 30.0%
CATCAATGAATACTAAACTC+TGG - chr7_3:81495997-81496016 None:intergenic 30.0%
CAGAGTTTAGTATTCATTGA+TGG + chr7_3:81495995-81496014 Msa1129540:intron 30.0%
!!! AAACAGCAGGATTTTAATTC+AGG + chr7_3:81496076-81496095 Msa1129540:intron 30.0%
! ACTAAACACCTATGATTTTG+TGG - chr7_3:81496131-81496150 None:intergenic 30.0%
! CAGTTAACGAAATTTTCTAG+GGG - chr7_3:81496162-81496181 None:intergenic 30.0%
! CTCAGTTAACGAAATTTTCT+AGG - chr7_3:81496164-81496183 None:intergenic 30.0%
TATATTGTTGCTCTCAACAA+TGG + chr7_3:81496435-81496454 Msa1129540:intron 30.0%
TTATTATGACGCAAAGTCTT+TGG - chr7_3:81496510-81496529 None:intergenic 30.0%
CAAAGTAAACCAACCCAAAA+AGG - chr7_3:81492226-81492245 None:intergenic 35.0%
AAGTTTCATCTTCTTCTAGG+TGG + chr7_3:81492594-81492613 Msa1129540:CDS 35.0%
! TCAAGGCTTGATCATGTTTT+AGG + chr7_3:81492767-81492786 Msa1129540:CDS 35.0%
!! GTTTTAGGCAAACAGAAAAG+AGG + chr7_3:81492782-81492801 Msa1129540:CDS 35.0%
ACTGTATGTTGACCAAGTAA+TGG - chr7_3:81493028-81493047 None:intergenic 35.0%
! CTTGTTGTAGTGAGAAATTC+CGG + chr7_3:81493062-81493081 Msa1129540:CDS 35.0%
TTTGATCATGACCATCTAAC+CGG - chr7_3:81493084-81493103 None:intergenic 35.0%
TGGTATTTGCCAAGTCAATT+CGG + chr7_3:81493107-81493126 Msa1129540:CDS 35.0%
!! GCTGTTGATTTCAATGATTC+AGG + chr7_3:81493136-81493155 Msa1129540:CDS 35.0%
! TTCAATGATTCAGGTGTTGT+TGG + chr7_3:81493145-81493164 Msa1129540:CDS 35.0%
TGATACTGAGTCTGAATTTG+AGG + chr7_3:81493288-81493307 Msa1129540:CDS 35.0%
ATACCGTCATCATCTGATAT+GGG - chr7_3:81493316-81493335 None:intergenic 35.0%
TATACCGTCATCATCTGATA+TGG - chr7_3:81493317-81493336 None:intergenic 35.0%
TGGAACTCTTATATCTTCCT+TGG - chr7_3:81493368-81493387 None:intergenic 35.0%
CAAAGCTCCATATATTCACA+TGG - chr7_3:81493388-81493407 None:intergenic 35.0%
! TTGTTTTCTACTTGTACTCG+TGG - chr7_3:81493490-81493509 None:intergenic 35.0%
TAATGTAGGAACATCGTTGA+AGG - chr7_3:81493632-81493651 None:intergenic 35.0%
CTTCAAATCCATGCATTACA+TGG - chr7_3:81493729-81493748 None:intergenic 35.0%
CATGTAATGCATGGATTTGA+AGG + chr7_3:81493727-81493746 Msa1129540:intron 35.0%
!!! TGATTTTAGAACTGACGAAG+AGG + chr7_3:81493993-81494012 Msa1129540:CDS 35.0%
CGTGAAGAAAACATTAAGTC+AGG + chr7_3:81494048-81494067 Msa1129540:CDS 35.0%
! AGGCTAATAACATCTGAAAC+AGG + chr7_3:81494075-81494094 Msa1129540:CDS 35.0%
TCACCAAGATCTAGCAAATT+AGG - chr7_3:81494144-81494163 None:intergenic 35.0%
GATATTGCTGTCACAATTCT+CGG + chr7_3:81494266-81494285 Msa1129540:CDS 35.0%
TCGCTATTCATAGACAATCT+GGG - chr7_3:81494330-81494349 None:intergenic 35.0%
TTCGCTATTCATAGACAATC+TGG - chr7_3:81494331-81494350 None:intergenic 35.0%
TCTGATGTTACTAACTCTAC+TGG + chr7_3:81494363-81494382 Msa1129540:CDS 35.0%
AGCATTGTCAGTGATATTGA+AGG + chr7_3:81494450-81494469 Msa1129540:CDS 35.0%
! TGTCTTTTAAGCTTGTCAAC+CGG - chr7_3:81494483-81494502 None:intergenic 35.0%
!! AAAGACAAGTTGATCATGAC+AGG + chr7_3:81494496-81494515 Msa1129540:CDS 35.0%
GAATGCTTTGTATAAAGAGC+TGG + chr7_3:81494527-81494546 Msa1129540:CDS 35.0%
AGAAAAGGCAACGTTACATA+TGG + chr7_3:81494617-81494636 Msa1129540:CDS 35.0%
TGAGCAGTCAGAATATGAAT+TGG + chr7_3:81494668-81494687 Msa1129540:CDS 35.0%
GTTAGAAGACTTAGAAGCAA+AGG + chr7_3:81494737-81494756 Msa1129540:CDS 35.0%
!! GGAGAAAAACTCTGAAATGA+AGG + chr7_3:81494812-81494831 Msa1129540:CDS 35.0%
TGACATTCAACTCATGTCTT+CGG + chr7_3:81494929-81494948 Msa1129540:CDS 35.0%
AACGTTTGAAGAAATTGGAG+AGG + chr7_3:81495021-81495040 Msa1129540:CDS 35.0%
AAAGGAATACCCAGAAAACT+CGG + chr7_3:81495109-81495128 Msa1129540:CDS 35.0%
AATGGTGAACTTGAATACTC+TGG + chr7_3:81495242-81495261 Msa1129540:CDS 35.0%
ATTATCTCCACATAGAACAG+AGG - chr7_3:81495276-81495295 None:intergenic 35.0%
! TTTAGCTTCTACTGGAAGTT+TGG + chr7_3:81495298-81495317 Msa1129540:CDS 35.0%
TAGTATGCTCAAGGAAACTA+TGG - chr7_3:81495364-81495383 None:intergenic 35.0%
!! GTAAGTTGATAGTATGCTCA+AGG - chr7_3:81495373-81495392 None:intergenic 35.0%
TGAAGGACTTAAGTTATTGC+AGG + chr7_3:81495406-81495425 Msa1129540:CDS 35.0%
TATATACATCCTCAAGCAAC+AGG - chr7_3:81495488-81495507 None:intergenic 35.0%
GTTGCTTGAGGATGTATATA+AGG + chr7_3:81495488-81495507 Msa1129540:exon 35.0%
! GTGCTTTTATCTTACGTCAA+TGG - chr7_3:81495532-81495551 None:intergenic 35.0%
TCTGTGATCCAAGATAAGTA+AGG + chr7_3:81495625-81495644 Msa1129540:intron 35.0%
CTGTGATCCAAGATAAGTAA+GGG + chr7_3:81495626-81495645 Msa1129540:intron 35.0%
ATCAATGTATCATTACAGGG+AGG - chr7_3:81495771-81495790 None:intergenic 35.0%
TTCGGACTGAGATTAACTAT+AGG + chr7_3:81496042-81496061 Msa1129540:intron 35.0%
!! GTATGAACTGGTTTGGAATT+TGG + chr7_3:81496310-81496329 Msa1129540:intron 35.0%
TAAAACTCTAACTACTGCAC+AGG - chr7_3:81496406-81496425 None:intergenic 35.0%
! TGTGCAGTAGTTAGAGTTTT+AGG + chr7_3:81496405-81496424 Msa1129540:intron 35.0%
! GAAGAAGGTACATTGAACAA+CGG + chr7_3:81496639-81496658 Msa1129540:three_prime_UTR 35.0%
ACAATAGCTTGATATCATCC+AGG + chr7_3:81496701-81496720 Msa1129540:three_prime_UTR 35.0%
TCATCCAGGTTACAAGAAAA+TGG + chr7_3:81496715-81496734 Msa1129540:three_prime_UTR 35.0%
CATCCAGGTTACAAGAAAAT+GGG + chr7_3:81496716-81496735 Msa1129540:three_prime_UTR 35.0%
! AATCCCATTTTCTTGTAACC+TGG - chr7_3:81496722-81496741 None:intergenic 35.0%
! TTTTTCGCCCTTCCTTTTTT+TGG + chr7_3:81496760-81496779 Msa1129540:three_prime_UTR 35.0%
! TTTTCGCCCTTCCTTTTTTT+GGG + chr7_3:81496761-81496780 Msa1129540:three_prime_UTR 35.0%
ACTATCCCCAAAAAAAGGAA+GGG - chr7_3:81496770-81496789 None:intergenic 35.0%
AACTATCCCCAAAAAAAGGA+AGG - chr7_3:81496771-81496790 None:intergenic 35.0%
AGGAAACTATCCCCAAAAAA+AGG - chr7_3:81496775-81496794 None:intergenic 35.0%
!!! TTTTTTGGGGATAGTTTCCT+TGG + chr7_3:81496775-81496794 Msa1129540:three_prime_UTR 35.0%
!! TTTTTGGGGATAGTTTCCTT+GGG + chr7_3:81496776-81496795 Msa1129540:three_prime_UTR 35.0%
TGGCTTCAGCTTTACTTGAA+TGG + chr7_3:81492648-81492667 Msa1129540:CDS 40.0%
!!! CACCATGCTTGTTTTGTTCA+AGG + chr7_3:81492750-81492769 Msa1129540:CDS 40.0%
AGCCTTGAACAAAACAAGCA+TGG - chr7_3:81492755-81492774 None:intergenic 40.0%
GGTGAAGAAGAAGAAGAATC+TGG + chr7_3:81492983-81493002 Msa1129540:CDS 40.0%
ACTACAACAAGAACAGTGTC+CGG - chr7_3:81493053-81493072 None:intergenic 40.0%
AGTGAGAAATTCCGGTTAGA+TGG + chr7_3:81493070-81493089 Msa1129540:CDS 40.0%
AGATGGTCATGATCAAAGTC+TGG + chr7_3:81493087-81493106 Msa1129540:CDS 40.0%
GCATCTCTGAATGATACAGA+CGG - chr7_3:81493202-81493221 None:intergenic 40.0%
CTGTATCATTCAGAGATGCA+CGG + chr7_3:81493203-81493222 Msa1129540:CDS 40.0%
GTTCCCATATCAGATGATGA+CGG + chr7_3:81493310-81493329 Msa1129540:CDS 40.0%
GTATCATCTTTCCCGTGAAT+TGG - chr7_3:81493346-81493365 None:intergenic 40.0%
!! TTGCAGTGTTGATTCAACTG+AGG + chr7_3:81493405-81493424 Msa1129540:CDS 40.0%
ATGGTTTGACAGAACTTGAC+TGG + chr7_3:81493557-81493576 Msa1129540:CDS 40.0%
GGAACATCGTTGAAGGAAAT+AGG - chr7_3:81493625-81493644 None:intergenic 40.0%
! AGTGCCTGTTGAAGTATCAA+AGG + chr7_3:81493666-81493685 Msa1129540:CDS 40.0%
TGCATGGATTTGAAGGATAG+AGG + chr7_3:81493734-81493753 Msa1129540:intron 40.0%
! AATGTTTTCTTCACGGTCCA+TGG - chr7_3:81494043-81494062 None:intergenic 40.0%
TGACACGTATCAGTAGAAAC+CGG - chr7_3:81494114-81494133 None:intergenic 40.0%
AAGCTAGCTGTCAGTAATAG+AGG + chr7_3:81494171-81494190 Msa1129540:CDS 40.0%
AATAGAGGAAGACAGTTGTC+TGG + chr7_3:81494186-81494205 Msa1129540:CDS 40.0%
! AAACGAATCTGGTTTGTCTC+TGG + chr7_3:81494422-81494441 Msa1129540:CDS 40.0%
TGATATTGAAGGTGAAAGCC+CGG + chr7_3:81494461-81494480 Msa1129540:CDS 40.0%
! GTCTTTTAAGCTTGTCAACC+GGG - chr7_3:81494482-81494501 None:intergenic 40.0%
TGCTTTGTATAAAGAGCTGG+AGG + chr7_3:81494530-81494549 Msa1129540:CDS 40.0%
! TAATGACCTACTTGCTGAGA+GGG + chr7_3:81494707-81494726 Msa1129540:CDS 40.0%
! TTTTTCTCCACCATGTTCTC+CGG - chr7_3:81494801-81494820 None:intergenic 40.0%
! CCAACTTTTCCGAGTTTTCT+GGG - chr7_3:81495121-81495140 None:intergenic 40.0%
! TCCAACTTTTCCGAGTTTTC+TGG - chr7_3:81495122-81495141 None:intergenic 40.0%
GACGAAACCGAATCTTTCAT+TGG - chr7_3:81495155-81495174 None:intergenic 40.0%
! TCACCATTTTGCTTGCAAAC+TGG - chr7_3:81495230-81495249 None:intergenic 40.0%
TGAAAGGTTACAAGCTCTTG+AGG + chr7_3:81495334-81495353 Msa1129540:CDS 40.0%
ACTATCAACTTACTGAGCGA+TGG + chr7_3:81495380-81495399 Msa1129540:CDS 40.0%
! ATAGATCAACCTGTTGCTTG+AGG + chr7_3:81495476-81495495 Msa1129540:CDS 40.0%
ATGTATCATTACAGGGAGGT+CGG - chr7_3:81495767-81495786 None:intergenic 40.0%
CACTGAATCATACGTTCATC+TGG - chr7_3:81495897-81495916 None:intergenic 40.0%
ATGAACGTATGATTCAGTGC+TGG + chr7_3:81495898-81495917 Msa1129540:intron 40.0%
TGTGCATGCCACAAAATCAT+AGG + chr7_3:81496120-81496139 Msa1129540:intron 40.0%
CATGTGGAATAACTGTCATG+AGG - chr7_3:81496259-81496278 None:intergenic 40.0%
CTAGTCGGTAAATAGTCATG+TGG - chr7_3:81496275-81496294 None:intergenic 40.0%
! TATACCAATGATTAGCCACC+AGG + chr7_3:81496617-81496636 Msa1129540:three_prime_UTR 40.0%
TGTTCAATGTACCTTCTTCC+TGG - chr7_3:81496638-81496657 None:intergenic 40.0%
TACATTGAACAACGGTGAAC+CGG + chr7_3:81496647-81496666 Msa1129540:three_prime_UTR 40.0%
!!! TTTCGCCCTTCCTTTTTTTG+GGG + chr7_3:81496762-81496781 Msa1129540:three_prime_UTR 40.0%
AAATGCAGCAAAATGTCCCA+AGG - chr7_3:81496795-81496814 None:intergenic 40.0%
! GGCATTGGATTTATCGACGA+CGG - chr7_3:81492933-81492952 None:intergenic 45.0%
CGATTTACCAAGCAATAGCC+GGG - chr7_3:81492963-81492982 None:intergenic 45.0%
CCGATTTACCAAGCAATAGC+CGG - chr7_3:81492964-81492983 None:intergenic 45.0%
CCGGCTATTGCTTGGTAAAT+CGG + chr7_3:81492961-81492980 Msa1129540:CDS 45.0%
CGGCTATTGCTTGGTAAATC+GGG + chr7_3:81492962-81492981 Msa1129540:CDS 45.0%
CTTGGTCAACATACAGTTGC+CGG + chr7_3:81493031-81493050 Msa1129540:CDS 45.0%
TTGCCAAGTCAATTCGGTCT+AGG + chr7_3:81493113-81493132 Msa1129540:CDS 45.0%
TGCCAAGTCAATTCGGTCTA+GGG + chr7_3:81493114-81493133 Msa1129540:CDS 45.0%
ACGGCTGAGAAATGATCATG+CGG + chr7_3:81493222-81493241 Msa1129540:CDS 45.0%
TGAGTTCTGTGTAGCCTACA+CGG - chr7_3:81493258-81493277 None:intergenic 45.0%
TCACGGGAAAGATGATACCA+AGG + chr7_3:81493348-81493367 Msa1129540:CDS 45.0%
AAGTACAGAAGCTGAAGTCC+CGG - chr7_3:81493449-81493468 None:intergenic 45.0%
!! ACTCGTGGTTCTGACAACAA+TGG - chr7_3:81493475-81493494 None:intergenic 45.0%
TAAAACCGCAGAAGCAACAG+TGG + chr7_3:81493525-81493544 Msa1129540:CDS 45.0%
! ACTTTCCACTGTTGCTTCTG+CGG - chr7_3:81493533-81493552 None:intergenic 45.0%
GCAACAGTGGAAAGTGGAAA+TGG + chr7_3:81493538-81493557 Msa1129540:CDS 45.0%
TGAAGGAAATAGGCTCGCTT+GGG - chr7_3:81493615-81493634 None:intergenic 45.0%
TTGAAGGAAATAGGCTCGCT+TGG - chr7_3:81493616-81493635 None:intergenic 45.0%
! AACAGGTTTAGAACCAACCC+CGG + chr7_3:81494092-81494111 Msa1129540:CDS 45.0%
ACACGTATCAGTAGAAACCG+GGG - chr7_3:81494112-81494131 None:intergenic 45.0%
GACACGTATCAGTAGAAACC+GGG - chr7_3:81494113-81494132 None:intergenic 45.0%
! ATGCTTGCAGAACATTGGCT+TGG + chr7_3:81494210-81494229 Msa1129540:CDS 45.0%
!! TGCTTGCAGAACATTGGCTT+GGG + chr7_3:81494211-81494230 Msa1129540:CDS 45.0%
TCGCTTGAGAGAAACGAATC+TGG + chr7_3:81494411-81494430 Msa1129540:CDS 45.0%
! GAATCTGGTTTGTCTCTGGA+TGG + chr7_3:81494426-81494445 Msa1129540:CDS 45.0%
TTCCTGCAGTCTAGTGATCA+TGG - chr7_3:81494598-81494617 None:intergenic 45.0%
CACTAGACTGCAGGAAGAAA+AGG + chr7_3:81494602-81494621 Msa1129540:CDS 45.0%
! CATCATCCTTAAGTGCTGCA+AGG - chr7_3:81494646-81494665 None:intergenic 45.0%
CTTGCAGCACTTAAGGATGA+TGG + chr7_3:81494644-81494663 Msa1129540:CDS 45.0%
! CTAATGACCTACTTGCTGAG+AGG + chr7_3:81494706-81494725 Msa1129540:CDS 45.0%
ATTCCCTGACGAATCAAAGC+CGG + chr7_3:81494779-81494798 Msa1129540:CDS 45.0%
CTCACCAGTCTCAGGATAAT+TGG + chr7_3:81495066-81495085 Msa1129540:CDS 45.0%
TAGGCCAATTATCCTGAGAC+TGG - chr7_3:81495073-81495092 None:intergenic 45.0%
CCCAGAAAACTCGGAAAAGT+TGG + chr7_3:81495118-81495137 Msa1129540:CDS 45.0%
ACTGGAGGTTTCTTGGATGA+CGG - chr7_3:81495212-81495231 None:intergenic 45.0%
CTTGCAAACTGGAGGTTTCT+TGG - chr7_3:81495219-81495238 None:intergenic 45.0%
! CCATTTTGCTTGCAAACTGG+AGG - chr7_3:81495227-81495246 None:intergenic 45.0%
CCTCCAGTTTGCAAGCAAAA+TGG + chr7_3:81495224-81495243 Msa1129540:CDS 45.0%
CATGACTCCTCTGTTCTATG+TGG + chr7_3:81495266-81495285 Msa1129540:CDS 45.0%
ATCAACTTACTGAGCGATGG+AGG + chr7_3:81495383-81495402 Msa1129540:CDS 45.0%
CTGCAACAATTACGCAGGAT+CGG + chr7_3:81495443-81495462 Msa1129540:CDS 45.0%
TGCAACAATTACGCAGGATC+GGG + chr7_3:81495444-81495463 Msa1129540:CDS 45.0%
GTCCATGTCGAGATAACATG+CGG + chr7_3:81495824-81495843 Msa1129540:intron 45.0%
AACCGCATGTTATCTCGACA+TGG - chr7_3:81495829-81495848 None:intergenic 45.0%
ATGTCGAGATAACATGCGGT+TGG + chr7_3:81495828-81495847 Msa1129540:intron 45.0%
AACTCTAACTACTGCACAGG+TGG - chr7_3:81496403-81496422 None:intergenic 45.0%
TCTTCCTGGTGGCTAATCAT+TGG - chr7_3:81496624-81496643 None:intergenic 45.0%
! ATGATTAGCCACCAGGAAGA+AGG + chr7_3:81496624-81496643 Msa1129540:three_prime_UTR 45.0%
TCAATGTACCTTCTTCCTGG+TGG - chr7_3:81496635-81496654 None:intergenic 45.0%
ACATTGAACAACGGTGAACC+GGG + chr7_3:81496648-81496667 Msa1129540:three_prime_UTR 45.0%
TGTACAGTTGCAACCAGTCA+TGG - chr7_3:81496678-81496697 None:intergenic 45.0%
AATCCAATGCCGAGACTTCC+CGG + chr7_3:81492942-81492961 Msa1129540:CDS 50.0%
AAGCAATAGCCGGGAAGTCT+CGG - chr7_3:81492954-81492973 None:intergenic 50.0%
AGCCCTAGACCGAATTGACT+TGG - chr7_3:81493119-81493138 None:intergenic 50.0%
GAGTTCTGTGTAGCCTACAC+GGG - chr7_3:81493257-81493276 None:intergenic 50.0%
GATCTGACTTCCACAAAGCC+CGG + chr7_3:81493427-81493446 Msa1129540:CDS 50.0%
ATCTGACTTCCACAAAGCCC+GGG + chr7_3:81493428-81493447 Msa1129540:CDS 50.0%
AGTACAGAAGCTGAAGTCCC+GGG - chr7_3:81493448-81493467 None:intergenic 50.0%
GCAGAAGCAACAGTGGAAAG+TGG + chr7_3:81493532-81493551 Msa1129540:CDS 50.0%
GAAGGAAATAGGCTCGCTTG+GGG - chr7_3:81493614-81493633 None:intergenic 50.0%
! TTTTCTTCACGGTCCATGGC+GGG - chr7_3:81494039-81494058 None:intergenic 50.0%
! GTTTTCTTCACGGTCCATGG+CGG - chr7_3:81494040-81494059 None:intergenic 50.0%
GTATCAGTAGAAACCGGGGT+TGG - chr7_3:81494108-81494127 None:intergenic 50.0%
CTGGCATGCTTGCAGAACAT+TGG + chr7_3:81494205-81494224 Msa1129540:CDS 50.0%
AGACATATCAGTCCCTCGAG+TGG - chr7_3:81494292-81494311 None:intergenic 50.0%
AGCCATGATCACTAGACTGC+AGG + chr7_3:81494593-81494612 Msa1129540:CDS 50.0%
TGGAAGCCTTGCAGCACTTA+AGG + chr7_3:81494637-81494656 Msa1129540:CDS 50.0%
! TCTCCGGCTTTGATTCGTCA+GGG - chr7_3:81494785-81494804 None:intergenic 50.0%
! TTCTCCGGCTTTGATTCGTC+AGG - chr7_3:81494786-81494805 None:intergenic 50.0%
CGAATCAAAGCCGGAGAACA+TGG + chr7_3:81494788-81494807 Msa1129540:CDS 50.0%
ATCAAAGCCGGAGAACATGG+TGG + chr7_3:81494791-81494810 Msa1129540:CDS 50.0%
CCTGAGACTGGTGAGAATTC+AGG - chr7_3:81495061-81495080 None:intergenic 50.0%
CCTGAATTCTCACCAGTCTC+AGG + chr7_3:81495058-81495077 Msa1129540:CDS 50.0%
CTGGAGGTTTCTTGGATGAC+GGG - chr7_3:81495211-81495230 None:intergenic 50.0%
TTACTGAGCGATGGAGGTGA+AGG + chr7_3:81495389-81495408 Msa1129540:CDS 50.0%
ATCGCCTGCAACAATTACGC+AGG + chr7_3:81495438-81495457 Msa1129540:CDS 50.0%
CGATCCTGCGTAATTGTTGC+AGG - chr7_3:81495445-81495464 None:intergenic 50.0%
TGAACCGGGTAAACCATGAC+TGG + chr7_3:81496662-81496681 Msa1129540:three_prime_UTR 50.0%
GCAACCAGTCATGGTTTACC+CGG - chr7_3:81496669-81496688 None:intergenic 50.0%
GAGACTTCCCGGCTATTGCT+TGG + chr7_3:81492953-81492972 Msa1129540:CDS 55.0%
GTGTAGCCTACACGGGACAA+AGG - chr7_3:81493250-81493269 None:intergenic 55.0%
GAAATAGGCTCGCTTGGGGA+CGG - chr7_3:81493610-81493629 None:intergenic 55.0%
TCACAATTCTCGGCCACTCG+AGG + chr7_3:81494276-81494295 Msa1129540:CDS 55.0%
CACAATTCTCGGCCACTCGA+GGG + chr7_3:81494277-81494296 Msa1129540:CDS 55.0%
CCTTCTCCCTCTCAGCAAGT+AGG - chr7_3:81494716-81494735 None:intergenic 55.0%
! CCTACTTGCTGAGAGGGAGA+AGG + chr7_3:81494713-81494732 Msa1129540:CDS 55.0%
!! GGATGACGGGTCATCAACCA+TGG - chr7_3:81495198-81495217 None:intergenic 55.0%
GGTAGCAAGCGTGAAACAGC+AGG + chr7_3:81496063-81496082 Msa1129540:intron 55.0%
TAGCCGGGAAGTCTCGGCAT+TGG - chr7_3:81492948-81492967 None:intergenic 60.0%
GCGGATCCTTTGTCCCGTGT+AGG + chr7_3:81493241-81493260 Msa1129540:CDS 60.0%
AGCTGAAGTCCCGGGCTTTG+TGG - chr7_3:81493440-81493459 None:intergenic 60.0%
ATCTGAGCGAAGACCCGCCA+TGG + chr7_3:81494023-81494042 Msa1129540:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 81492164 81497003 81492164 ID=Msa1129540;Name=Msa1129540
chr7_3 mRNA 81492164 81497003 81492164 ID=Msa1129540-mRNA-1;Parent=Msa1129540;Name=Msa1129540-mRNA-1;_AED=0.07;_eAED=0.07;_QI=266|1|1|1|0.33|0|4|405|873
chr7_3 exon 81492164 81492342 81492164 ID=Msa1129540-mRNA-1:exon:23713;Parent=Msa1129540-mRNA-1
chr7_3 exon 81492491 81493694 81492491 ID=Msa1129540-mRNA-1:exon:23714;Parent=Msa1129540-mRNA-1
chr7_3 exon 81493992 81495509 81493992 ID=Msa1129540-mRNA-1:exon:23715;Parent=Msa1129540-mRNA-1
chr7_3 exon 81496612 81497003 81496612 ID=Msa1129540-mRNA-1:exon:23716;Parent=Msa1129540-mRNA-1
chr7_3 five_prime_UTR 81492164 81492342 81492164 ID=Msa1129540-mRNA-1:five_prime_utr;Parent=Msa1129540-mRNA-1
chr7_3 five_prime_UTR 81492491 81492577 81492491 ID=Msa1129540-mRNA-1:five_prime_utr;Parent=Msa1129540-mRNA-1
chr7_3 CDS 81492578 81493694 81492578 ID=Msa1129540-mRNA-1:cds;Parent=Msa1129540-mRNA-1
chr7_3 CDS 81493992 81495496 81493992 ID=Msa1129540-mRNA-1:cds;Parent=Msa1129540-mRNA-1
chr7_3 three_prime_UTR 81495497 81495509 81495497 ID=Msa1129540-mRNA-1:three_prime_utr;Parent=Msa1129540-mRNA-1
chr7_3 three_prime_UTR 81496612 81497003 81496612 ID=Msa1129540-mRNA-1:three_prime_utr;Parent=Msa1129540-mRNA-1
Gene Sequence

>Msa1129540

ATGGCTACTGCCAATGAAGTTTCATCTTCTTCTAGGTGGCAAAATTTCTACAAAAGAATTACAACATCATTGGCTTCAGCTTTACTTGAATGGTTATTGATCATTTTCTTATTTGTTAGTGCTATTTTCTCTTATGTTATTACTAAATTTGCTAATTACTGCAAATTGAAAACACCATGCTTGTTTTGTTCAAGGCTTGATCATGTTTTAGGCAAACAGAAAAGAGGTTATTATTTGGATTTGATTTGTAGTCTTCATAAGTCTGAAATTTCTGAATTAGTTTTTTGTCGCGCACACGATAAGCTTGTAAATATTCAAGGAGTTTGTGAAACTTGTGTCTTGTCTTCTGCAACCGTCGTCGATAAATCCAATGCCGAGACTTCCCGGCTATTGCTTGGTAAATCGGGTGAAGAAGAAGAAGAATCTGGATCTGTATTTGATCATGATCCATTACTTGGTCAACATACAGTTGCCGGACACTGTTCTTGTTGTAGTGAGAAATTCCGGTTAGATGGTCATGATCAAAGTCTGGTATTTGCCAAGTCAATTCGGTCTAGGGCTGTTGATTTCAATGATTCAGGTGTTGTTGGAAATGATTTTTATGAGAAAAGAAGTGCGAAGCCGTCTGTATCATTCAGAGATGCACGGCTGAGAAATGATCATGCGGATCCTTTGTCCCGTGTAGGCTACACAGAACTCAACATTACTTCTGATACTGAGTCTGAATTTGAGGTTCCCATATCAGATGATGACGGTATAAGTATACCAATTCACGGGAAAGATGATACCAAGGAAGATATAAGAGTTCCATGTGAATATATGGAGCTTTGCAGTGTTGATTCAACTGAGGATCTGACTTCCACAAAGCCCGGGACTTCAGCTTCTGTACTTGAGCCATTGTTGTCAGAACCACGAGTACAAGTAGAAAACAAAGACATTTGTGCTATTAAAACCGCAGAAGCAACAGTGGAAAGTGGAAATGGTTTGACAGAACTTGACTGGCAGCAGATTGAAAGAAGTGATGTTTGTCCGTCCCCAAGCGAGCCTATTTCCTTCAACGATGTTCCTACATTATCAAATATAACAGAAGTGCCTGTTGAAGTATCAAAGGAAAAGCATGATTTTAGAACTGACGAAGAGGAGCTAACATCTGAGCGAAGACCCGCCATGGACCGTGAAGAAAACATTAAGTCAGGCAATAGGCTAATAACATCTGAAACAGGTTTAGAACCAACCCCGGTTTCTACTGATACGTGTCAGCAAAATCCTAATTTGCTAGATCTTGGTGATGCTTATAAGCTAGCTGTCAGTAATAGAGGAAGACAGTTGTCTGGCATGCTTGCAGAACATTGGCTTGGGAAAGATTCCTCAAGAGTTAATGAAGATCTAAAGATATTGCTGTCACAATTCTCGGCCACTCGAGGGACTGATATGTCTTTTAATGATATCAGTCCCAGATTGTCTATGAATAGCGAAGAAGCAAAGAGTTCTGATGTTACTAACTCTACTGGAATGCAGATACTTCAAAAAATGATTTCGCTTGAGAGAAACGAATCTGGTTTGTCTCTGGATGGAAGCATTGTCAGTGATATTGAAGGTGAAAGCCCGGTTGACAAGCTTAAAAGACAAGTTGATCATGACAGGAAACTTATGAATGCTTTGTATAAAGAGCTGGAGGAAGAGAGAAACGCTTCTGCAATTGCTGCAAGTCAAGCTTTAGCCATGATCACTAGACTGCAGGAAGAAAAGGCAACGTTACATATGGAAGCCTTGCAGCACTTAAGGATGATGGATGAGCAGTCAGAATATGAATTGGAAGCATTGCAAAAAGCTAATGACCTACTTGCTGAGAGGGAGAAGGAGTTAGAAGACTTAGAAGCAAAGGTTGAGTTTTATAGGAAGAAATTCCCTGACGAATCAAAGCCGGAGAACATGGTGGAGAAAAACTCTGAAATGAAGGTAAAAGATATTGGATTGGATCTTTCACAATGCACTTTCATTGAAAATGATGAAAGTGGCCCCCGAAAATCAAATCCTAATATCTATGACAAAGCTGACATTCAACTCATGTCTTCGGAAGAAAAGAATATTCAATCTGCACAAAGTTTACAAATGGAGTTTCAAGATGAAAAGTTATATATTTCTGAACGTTTGAAGAAATTGGAGAGGCAAGTATACTTTTTCCTGAATTCTCACCAGTCTCAGGATAATTGGCCTAATTCTGAAAATGTTGTAAAGGAATACCCAGAAAACTCGGAAAAGTTGGACAAAAATATTCCAATGAAAGATTCGGTTTCGTCATTCAAATTAAATTCAGATGCCATGGTTGATGACCCGTCATCCAAGAAACCTCCAGTTTGCAAGCAAAATGGTGAACTTGAATACTCTGGACATGACTCCTCTGTTCTATGTGGAGATAATGATTTAGCTTCTACTGGAAGTTTGGTTTCAGATTTTATTGAAAGGTTACAAGCTCTTGAGGCAGACCATAGTTTCCTTGAGCATACTATCAACTTACTGAGCGATGGAGGTGAAGGACTTAAGTTATTGCAGGAAATAGCTGATCGCCTGCAACAATTACGCAGGATCGGGATAAGAGAAATAGATCAACCTGTTGCTTGA
Protein sequence

>Msa1129540

MATANEVSSSSRWQNFYKRITTSLASALLEWLLIIFLFVSAIFSYVITKFANYCKLKTPCLFCSRLDHVLGKQKRGYYLDLICSLHKSEISELVFCRAHDKLVNIQGVCETCVLSSATVVDKSNAETSRLLLGKSGEEEEESGSVFDHDPLLGQHTVAGHCSCCSEKFRLDGHDQSLVFAKSIRSRAVDFNDSGVVGNDFYEKRSAKPSVSFRDARLRNDHADPLSRVGYTELNITSDTESEFEVPISDDDGISIPIHGKDDTKEDIRVPCEYMELCSVDSTEDLTSTKPGTSASVLEPLLSEPRVQVENKDICAIKTAEATVESGNGLTELDWQQIERSDVCPSPSEPISFNDVPTLSNITEVPVEVSKEKHDFRTDEEELTSERRPAMDREENIKSGNRLITSETGLEPTPVSTDTCQQNPNLLDLGDAYKLAVSNRGRQLSGMLAEHWLGKDSSRVNEDLKILLSQFSATRGTDMSFNDISPRLSMNSEEAKSSDVTNSTGMQILQKMISLERNESGLSLDGSIVSDIEGESPVDKLKRQVDHDRKLMNALYKELEEERNASAIAASQALAMITRLQEEKATLHMEALQHLRMMDEQSEYELEALQKANDLLAEREKELEDLEAKVEFYRKKFPDESKPENMVEKNSEMKVKDIGLDLSQCTFIENDESGPRKSNPNIYDKADIQLMSSEEKNIQSAQSLQMEFQDEKLYISERLKKLERQVYFFLNSHQSQDNWPNSENVVKEYPENSEKLDKNIPMKDSVSSFKLNSDAMVDDPSSKKPPVCKQNGELEYSGHDSSVLCGDNDLASTGSLVSDFIERLQALEADHSFLEHTINLLSDGGEGLKLLQEIADRLQQLRRIGIREIDQPVA*