AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0902850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0902850 MtrunA17_Chr3g0145951 99.119 227 2 0 1 227 1 227 1.98e-158 437
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0902850 AT1G16210.1 73.009 226 58 1 1 223 1 226 1.16e-106 307

Find 93 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCTCTTCCTCCCTCTTCT+TGG 0.214378 6_1:-103745755 None:intergenic
CGTTTCCGCGGCGCTCTTGC+GGG 0.269884 6_1:-103745656 None:intergenic
CGCCGCGGAAACGGAGAAAA+AGG 0.310222 6_1:+103745666 Msa0902850:CDS
AGGACATGATTTGGAAGCTT+TGG 0.331210 6_1:+103746302 Msa0902850:CDS
GCATCTTTAATTCACCTAGT+AGG 0.334052 6_1:-103745591 None:intergenic
ACCCTGTTTGCCTTCTTGTC+AGG 0.352573 6_1:-103745868 None:intergenic
GGTTTCTCTTGCTTCAACTT+AGG 0.359376 6_1:-103746256 None:intergenic
CACAGTACAAGGACATGATT+TGG 0.361884 6_1:+103746293 Msa0902850:CDS
CGCCTCTCTGGATGCCTGTC+GGG 0.367827 6_1:-103746117 None:intergenic
CGCCAAGAAGAGGGAGGAAG+AGG 0.386559 6_1:+103745753 Msa0902850:CDS
CCGCAAGAGCGCCGCGGAAA+CGG 0.388342 6_1:+103745657 Msa0902850:CDS
GAAGCCTTGAGGCGCCTCTC+TGG 0.388885 6_1:-103746129 None:intergenic
GAGTGAGTGACTTGATTAAG+AGG 0.390157 6_1:-103746343 None:intergenic
CCTAGTAGGGTTTCGCTCGC+TGG 0.400470 6_1:-103745577 None:intergenic
GCCTCCGTCACCTTCGGTAC+AGG 0.404250 6_1:-103745898 None:intergenic
GGTGCGTCGATTGGCGGAGC+TGG 0.407431 6_1:+103745813 Msa0902850:CDS
CCGTTTCCGCGGCGCTCTTG+CGG 0.414275 6_1:-103745657 None:intergenic
CATCTTTAATTCACCTAGTA+GGG 0.414363 6_1:-103745590 None:intergenic
AGCCTGACAAGAAGGCAAAC+AGG 0.415814 6_1:+103745866 Msa0902850:CDS
AAAGATGGGTGTGAATTCTA+AGG 0.416000 6_1:+103745618 Msa0902850:CDS
GGAGGAAGAGGCGGATAAGA+AGG 0.418038 6_1:+103745765 Msa0902850:CDS
CTTGCGGGCCCTCGCCGCCT+CGG 0.418040 6_1:-103745641 None:intergenic
GGATAAGAAGGCGGAGGCGG+CGG 0.424210 6_1:+103745777 Msa0902850:CDS
GAGAGAAGGAGGAGCAGTAC+TGG 0.439791 6_1:+103745701 Msa0902850:CDS
ACTTGATTAAGAGGATTGTC+AGG 0.442090 6_1:-103746334 None:intergenic
GCAAGCTATGGCACAGAAGA+AGG 0.443447 6_1:+103745948 Msa0902850:CDS
GGCGGATAAGAAGGCGGAGG+CGG 0.454208 6_1:+103745774 Msa0902850:CDS
GAAGAGGACTGCTGGGGAGG+AGG 0.460637 6_1:+103745984 Msa0902850:CDS
TTCTAAGGCCGAGGCGGCGA+GGG 0.465736 6_1:+103745633 Msa0902850:CDS
GAAGCGAAGAAGAGGACTGC+TGG 0.465817 6_1:+103745976 Msa0902850:CDS
GCGCCTCAAGGCTTCCTTCA+AGG 0.472754 6_1:+103746137 Msa0902850:CDS
AGCGGAGGTGCGTCGATTGG+CGG 0.475781 6_1:+103745807 Msa0902850:CDS
AGCTCCGCCTCCGTCACCTT+CGG 0.476514 6_1:-103745904 None:intergenic
AAAACAGATACATACCTTGA+AGG 0.481347 6_1:-103746151 None:intergenic
GCGCCTCTCTGGATGCCTGT+CGG 0.482921 6_1:-103746118 None:intergenic
TACTGTGTGTATGTAAGCCC+TGG 0.485764 6_1:-103746277 None:intergenic
GGAGGCGGCGGCACGACGAG+CGG 0.491424 6_1:+103745789 Msa0902850:CDS
AAGCGAAGAAGAGGACTGCT+GGG 0.493135 6_1:+103745977 Msa0902850:CDS
GATGGCTTCGTCAAGAGTGC+TGG 0.493876 6_1:-103746064 None:intergenic
CGGAGGCGGAGCTGAGGAAG+CGG 0.494922 6_1:+103745914 Msa0902850:CDS
CCAGCGAGCGAAACCCTACT+AGG 0.505208 6_1:+103745577 Msa0902850:five_prime_UTR
GCTGAGGAAGCGGCGAGAGG+AGG 0.505549 6_1:+103745924 Msa0902850:CDS
TCCCTCTTCTTGGCGGCGCG+TGG 0.507668 6_1:-103745745 None:intergenic
CTCTTCCTCCCTCTTCTTGG+CGG 0.507806 6_1:-103745752 None:intergenic
GCCACGCGCCGCCAAGAAGA+GGG 0.513629 6_1:+103745744 Msa0902850:CDS
AGCCACGCGCCGCCAAGAAG+AGG 0.516989 6_1:+103745743 Msa0902850:CDS
GCGAGAGGAGGAGCAAGCTA+TGG 0.521774 6_1:+103745936 Msa0902850:CDS
ACGAGCGGAGGTGCGTCGAT+TGG 0.522062 6_1:+103745804 Msa0902850:CDS
GGCGGCGGCACGACGAGCGG+AGG 0.533711 6_1:+103745792 Msa0902850:CDS
ACTTAATCATGAATTTGAGA+TGG 0.534693 6_1:-103746509 None:intergenic
CCTCCGTCACCTTCGGTACA+GGG 0.541244 6_1:-103745897 None:intergenic
GGAGCTGAGGAAGCGGCGAG+AGG 0.552884 6_1:+103745921 Msa0902850:CDS
GCCTGACAAGAAGGCAAACA+GGG 0.555319 6_1:+103745867 Msa0902850:CDS
GCTTACATACACACAGTACA+AGG 0.555636 6_1:+103746282 Msa0902850:CDS
CAAGAAGAGGGAGGAAGAGG+CGG 0.555830 6_1:+103745756 Msa0902850:CDS
GGGTGTGAATTCTAAGGCCG+AGG 0.555835 6_1:+103745624 Msa0902850:CDS
GAAGAAGAGGACTGCTGGGG+AGG 0.559520 6_1:+103745981 Msa0902850:CDS
AGGTGACGGAGGCGGAGCTG+AGG 0.562961 6_1:+103745908 Msa0902850:CDS
AGAGGCGGATAAGAAGGCGG+AGG 0.563473 6_1:+103745771 Msa0902850:CDS
TGTACCGAAGGTGACGGAGG+CGG 0.565468 6_1:+103745900 Msa0902850:CDS
AGGCGGAGGAAGCGAAGAAG+AGG 0.566562 6_1:+103745968 Msa0902850:CDS
GATTCAATAAAGTCATGGCT+TGG 0.566810 6_1:+103746464 Msa0902850:three_prime_UTR
CTCTCTGGATGCCTGTCGGG+AGG 0.568049 6_1:-103746114 None:intergenic
GCGTCGATTGGCGGAGCTGG+AGG 0.569855 6_1:+103745816 Msa0902850:CDS
GCATCCAGAGAGGCGCCTCA+AGG 0.574178 6_1:+103746125 Msa0902850:CDS
ATCGATACTCATCTGAGCGA+TGG 0.576376 6_1:-103746082 None:intergenic
AGCAGCAACTGCTGAAGCAG+AGG 0.579802 6_1:+103745537 Msa0902850:five_prime_UTR
ATTCTAAGGCCGAGGCGGCG+AGG 0.588501 6_1:+103745632 Msa0902850:CDS
TCGGGAGACTCGAGAGAAGG+AGG 0.591271 6_1:+103745690 Msa0902850:CDS
TCAATAAAGTCATGGCTTGG+CGG 0.593024 6_1:+103746467 Msa0902850:three_prime_UTR
ATAACAACTTACCTCCCGAC+AGG 0.598312 6_1:+103746103 Msa0902850:CDS
ACGCGCCGCCAAGAAGAGGG+AGG 0.598349 6_1:+103745747 Msa0902850:CDS
GAGGGCCCGCAAGAGCGCCG+CGG 0.599591 6_1:+103745651 Msa0902850:CDS
GGAGCTGGAGGAGAAAGAGC+TGG 0.599937 6_1:+103745828 Msa0902850:CDS
AAGTTGAAGCAAGAGAAACC+AGG 0.604189 6_1:+103746259 Msa0902850:CDS
GGATCGGGAGACTCGAGAGA+AGG 0.606508 6_1:+103745687 Msa0902850:CDS
CCCTGTACCGAAGGTGACGG+AGG 0.608676 6_1:+103745897 Msa0902850:CDS
TATGGCACAGAAGAAGGCGG+AGG 0.610578 6_1:+103745954 Msa0902850:CDS
ATGATGATTCAATAAAGTCA+TGG 0.612785 6_1:+103746459 Msa0902850:three_prime_UTR
GGAGGAGGAGTACGAGAGAG+TGG 0.614209 6_1:+103745999 Msa0902850:CDS
GGTGTCTATCCCTGTACCGA+AGG 0.615935 6_1:+103745888 Msa0902850:CDS
TTATTGAATCATCATTCACT+CGG 0.617967 6_1:-103746451 None:intergenic
GGAAGAGGCGGATAAGAAGG+CGG 0.620199 6_1:+103745768 Msa0902850:CDS
TATCCCTGTACCGAAGGTGA+CGG 0.630098 6_1:+103745894 Msa0902850:CDS
CTCCCGACAGGCATCCAGAG+AGG 0.637354 6_1:+103746115 Msa0902850:CDS
GGAGGAGCAGTACTGGCGAG+AGG 0.649799 6_1:+103745708 Msa0902850:CDS
TCATATACTACTGCTTACAG+AGG 0.659085 6_1:-103746566 None:intergenic
TGTGAATTCTAAGGCCGAGG+CGG 0.660597 6_1:+103745627 Msa0902850:CDS
AGTTGAAGCAAGAGAAACCA+GGG 0.661223 6_1:+103746260 Msa0902850:CDS
CATATACTACTGCTTACAGA+GGG 0.665172 6_1:-103746565 None:intergenic
AGCGAAGAAGAGGACTGCTG+GGG 0.681467 6_1:+103745978 Msa0902850:CDS
ATACCTTGAAGGAAGCCTTG+AGG 0.684866 6_1:-103746140 None:intergenic
AGCTATGGCACAGAAGAAGG+CGG 0.695332 6_1:+103745951 Msa0902850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATAACAAAAATAAAAGAT+AGG - chr6_1:103746397-103746416 None:intergenic 15.0%
!! AGATAACAAAAATAAAAGAT+AGG - chr6_1:103746397-103746416 None:intergenic 15.0%
! AATTCATTCATTCATTCATC+AGG + chr6_1:103746213-103746232 Msa0902850:intron 25.0%
! AATAAAAGATAGGCTAAAAG+TGG - chr6_1:103746387-103746406 None:intergenic 25.0%
! TTATTGAATCATCATTCACT+CGG - chr6_1:103746454-103746473 None:intergenic 25.0%
! ATGATGATTCAATAAAGTCA+TGG + chr6_1:103746459-103746478 Msa0902850:three_prime_UTR 25.0%
! ACTTAATCATGAATTTGAGA+TGG - chr6_1:103746512-103746531 None:intergenic 25.0%
!!! ACAAACATTGTTTGTTTTCA+TGG + chr6_1:103746618-103746637 Msa0902850:three_prime_UTR 25.0%
! AATTCATTCATTCATTCATC+AGG + chr6_1:103746213-103746232 Msa0902850:intron 25.0%
! AATAAAAGATAGGCTAAAAG+TGG - chr6_1:103746387-103746406 None:intergenic 25.0%
! TTATTGAATCATCATTCACT+CGG - chr6_1:103746454-103746473 None:intergenic 25.0%
! ATGATGATTCAATAAAGTCA+TGG + chr6_1:103746459-103746478 Msa0902850:three_prime_UTR 25.0%
! ACTTAATCATGAATTTGAGA+TGG - chr6_1:103746512-103746531 None:intergenic 25.0%
!!! ACAAACATTGTTTGTTTTCA+TGG + chr6_1:103746618-103746637 Msa0902850:three_prime_UTR 25.0%
CATCTTTAATTCACCTAGTA+GGG - chr6_1:103745593-103745612 None:intergenic 30.0%
ATTAAAGATGCCCAAAAAGA+TGG + chr6_1:103745603-103745622 Msa0902850:exon 30.0%
TTAAAGATGCCCAAAAAGAT+GGG + chr6_1:103745604-103745623 Msa0902850:exon 30.0%
AAAACAGATACATACCTTGA+AGG - chr6_1:103746154-103746173 None:intergenic 30.0%
!! CTAAAAGTGGATTATAAAGG+AGG - chr6_1:103746374-103746393 None:intergenic 30.0%
!! AGGCTAAAAGTGGATTATAA+AGG - chr6_1:103746377-103746396 None:intergenic 30.0%
CATCTTTAATTCACCTAGTA+GGG - chr6_1:103745593-103745612 None:intergenic 30.0%
ATTAAAGATGCCCAAAAAGA+TGG + chr6_1:103745603-103745622 Msa0902850:exon 30.0%
TTAAAGATGCCCAAAAAGAT+GGG + chr6_1:103745604-103745623 Msa0902850:exon 30.0%
AAAACAGATACATACCTTGA+AGG - chr6_1:103746154-103746173 None:intergenic 30.0%
!! CTAAAAGTGGATTATAAAGG+AGG - chr6_1:103746374-103746393 None:intergenic 30.0%
!! AGGCTAAAAGTGGATTATAA+AGG - chr6_1:103746377-103746396 None:intergenic 30.0%
GCATCTTTAATTCACCTAGT+AGG - chr6_1:103745594-103745613 None:intergenic 35.0%
! GAATTCACACCCATCTTTTT+GGG - chr6_1:103745616-103745635 None:intergenic 35.0%
! AGAATTCACACCCATCTTTT+TGG - chr6_1:103745617-103745636 None:intergenic 35.0%
AAAGATGGGTGTGAATTCTA+AGG + chr6_1:103745618-103745637 Msa0902850:CDS 35.0%
GATTAAAAAGCCTGACAAGA+AGG + chr6_1:103745858-103745877 Msa0902850:CDS 35.0%
ACTTGATTAAGAGGATTGTC+AGG - chr6_1:103746337-103746356 None:intergenic 35.0%
GATTCAATAAAGTCATGGCT+TGG + chr6_1:103746464-103746483 Msa0902850:three_prime_UTR 35.0%
CATATACTACTGCTTACAGA+GGG - chr6_1:103746568-103746587 None:intergenic 35.0%
TCATATACTACTGCTTACAG+AGG - chr6_1:103746569-103746588 None:intergenic 35.0%
GCATCTTTAATTCACCTAGT+AGG - chr6_1:103745594-103745613 None:intergenic 35.0%
! GAATTCACACCCATCTTTTT+GGG - chr6_1:103745616-103745635 None:intergenic 35.0%
! AGAATTCACACCCATCTTTT+TGG - chr6_1:103745617-103745636 None:intergenic 35.0%
AAAGATGGGTGTGAATTCTA+AGG + chr6_1:103745618-103745637 Msa0902850:CDS 35.0%
GATTAAAAAGCCTGACAAGA+AGG + chr6_1:103745858-103745877 Msa0902850:CDS 35.0%
ACTTGATTAAGAGGATTGTC+AGG - chr6_1:103746337-103746356 None:intergenic 35.0%
GATTCAATAAAGTCATGGCT+TGG + chr6_1:103746464-103746483 Msa0902850:three_prime_UTR 35.0%
CATATACTACTGCTTACAGA+GGG - chr6_1:103746568-103746587 None:intergenic 35.0%
TCATATACTACTGCTTACAG+AGG - chr6_1:103746569-103746588 None:intergenic 35.0%
GGTTTCTCTTGCTTCAACTT+AGG - chr6_1:103746259-103746278 None:intergenic 40.0%
AAGTTGAAGCAAGAGAAACC+AGG + chr6_1:103746259-103746278 Msa0902850:CDS 40.0%
AGTTGAAGCAAGAGAAACCA+GGG + chr6_1:103746260-103746279 Msa0902850:CDS 40.0%
GCTTACATACACACAGTACA+AGG + chr6_1:103746282-103746301 Msa0902850:CDS 40.0%
CACAGTACAAGGACATGATT+TGG + chr6_1:103746293-103746312 Msa0902850:CDS 40.0%
! AGGACATGATTTGGAAGCTT+TGG + chr6_1:103746302-103746321 Msa0902850:CDS 40.0%
GAGTGAGTGACTTGATTAAG+AGG - chr6_1:103746346-103746365 None:intergenic 40.0%
! TCAATAAAGTCATGGCTTGG+CGG + chr6_1:103746467-103746486 Msa0902850:three_prime_UTR 40.0%
GGTTTCTCTTGCTTCAACTT+AGG - chr6_1:103746259-103746278 None:intergenic 40.0%
AAGTTGAAGCAAGAGAAACC+AGG + chr6_1:103746259-103746278 Msa0902850:CDS 40.0%
AGTTGAAGCAAGAGAAACCA+GGG + chr6_1:103746260-103746279 Msa0902850:CDS 40.0%
GCTTACATACACACAGTACA+AGG + chr6_1:103746282-103746301 Msa0902850:CDS 40.0%
CACAGTACAAGGACATGATT+TGG + chr6_1:103746293-103746312 Msa0902850:CDS 40.0%
! AGGACATGATTTGGAAGCTT+TGG + chr6_1:103746302-103746321 Msa0902850:CDS 40.0%
GAGTGAGTGACTTGATTAAG+AGG - chr6_1:103746346-103746365 None:intergenic 40.0%
! TCAATAAAGTCATGGCTTGG+CGG + chr6_1:103746467-103746486 Msa0902850:three_prime_UTR 40.0%
! ATCCTTTTTCTCCGTTTCCG+CGG - chr6_1:103745671-103745690 None:intergenic 45.0%
CGGAAACGGAGAAAAAGGAT+CGG + chr6_1:103745671-103745690 Msa0902850:CDS 45.0%
GGAAACGGAGAAAAAGGATC+GGG + chr6_1:103745672-103745691 Msa0902850:CDS 45.0%
ATCGATACTCATCTGAGCGA+TGG - chr6_1:103746085-103746104 None:intergenic 45.0%
ATAACAACTTACCTCCCGAC+AGG + chr6_1:103746103-103746122 Msa0902850:CDS 45.0%
ATACCTTGAAGGAAGCCTTG+AGG - chr6_1:103746143-103746162 None:intergenic 45.0%
TACTGTGTGTATGTAAGCCC+TGG - chr6_1:103746280-103746299 None:intergenic 45.0%
! ATCCTTTTTCTCCGTTTCCG+CGG - chr6_1:103745671-103745690 None:intergenic 45.0%
CGGAAACGGAGAAAAAGGAT+CGG + chr6_1:103745671-103745690 Msa0902850:CDS 45.0%
GGAAACGGAGAAAAAGGATC+GGG + chr6_1:103745672-103745691 Msa0902850:CDS 45.0%
ATCGATACTCATCTGAGCGA+TGG - chr6_1:103746085-103746104 None:intergenic 45.0%
ATAACAACTTACCTCCCGAC+AGG + chr6_1:103746103-103746122 Msa0902850:CDS 45.0%
ATACCTTGAAGGAAGCCTTG+AGG - chr6_1:103746143-103746162 None:intergenic 45.0%
TACTGTGTGTATGTAAGCCC+TGG - chr6_1:103746280-103746299 None:intergenic 45.0%
!! TGTGAATTCTAAGGCCGAGG+CGG + chr6_1:103745627-103745646 Msa0902850:CDS 50.0%
AGCCTGACAAGAAGGCAAAC+AGG + chr6_1:103745866-103745885 Msa0902850:CDS 50.0%
GCCTGACAAGAAGGCAAACA+GGG + chr6_1:103745867-103745886 Msa0902850:CDS 50.0%
ACCCTGTTTGCCTTCTTGTC+AGG - chr6_1:103745871-103745890 None:intergenic 50.0%
TATCCCTGTACCGAAGGTGA+CGG + chr6_1:103745894-103745913 Msa0902850:CDS 50.0%
GCAAGCTATGGCACAGAAGA+AGG + chr6_1:103745948-103745967 Msa0902850:CDS 50.0%
AGCTATGGCACAGAAGAAGG+CGG + chr6_1:103745951-103745970 Msa0902850:CDS 50.0%
AAGCGAAGAAGAGGACTGCT+GGG + chr6_1:103745977-103745996 Msa0902850:CDS 50.0%
!! TGTGAATTCTAAGGCCGAGG+CGG + chr6_1:103745627-103745646 Msa0902850:CDS 50.0%
AGCCTGACAAGAAGGCAAAC+AGG + chr6_1:103745866-103745885 Msa0902850:CDS 50.0%
GCCTGACAAGAAGGCAAACA+GGG + chr6_1:103745867-103745886 Msa0902850:CDS 50.0%
ACCCTGTTTGCCTTCTTGTC+AGG - chr6_1:103745871-103745890 None:intergenic 50.0%
TATCCCTGTACCGAAGGTGA+CGG + chr6_1:103745894-103745913 Msa0902850:CDS 50.0%
GCAAGCTATGGCACAGAAGA+AGG + chr6_1:103745948-103745967 Msa0902850:CDS 50.0%
AGCTATGGCACAGAAGAAGG+CGG + chr6_1:103745951-103745970 Msa0902850:CDS 50.0%
AAGCGAAGAAGAGGACTGCT+GGG + chr6_1:103745977-103745996 Msa0902850:CDS 50.0%
AGCAGCAACTGCTGAAGCAG+AGG + chr6_1:103745537-103745556 Msa0902850:five_prime_UTR 55.0%
!! GGGTGTGAATTCTAAGGCCG+AGG + chr6_1:103745624-103745643 Msa0902850:CDS 55.0%
GAGAGAAGGAGGAGCAGTAC+TGG + chr6_1:103745701-103745720 Msa0902850:CDS 55.0%
CTCTTCCTCCCTCTTCTTGG+CGG - chr6_1:103745755-103745774 None:intergenic 55.0%
CAAGAAGAGGGAGGAAGAGG+CGG + chr6_1:103745756-103745775 Msa0902850:CDS 55.0%
GGAGGAAGAGGCGGATAAGA+AGG + chr6_1:103745765-103745784 Msa0902850:CDS 55.0%
GGAAGAGGCGGATAAGAAGG+CGG + chr6_1:103745768-103745787 Msa0902850:CDS 55.0%
GGTGTCTATCCCTGTACCGA+AGG + chr6_1:103745888-103745907 Msa0902850:CDS 55.0%
TATGGCACAGAAGAAGGCGG+AGG + chr6_1:103745954-103745973 Msa0902850:CDS 55.0%
GAAGCGAAGAAGAGGACTGC+TGG + chr6_1:103745976-103745995 Msa0902850:CDS 55.0%
AGCGAAGAAGAGGACTGCTG+GGG + chr6_1:103745978-103745997 Msa0902850:CDS 55.0%
! GATGGCTTCGTCAAGAGTGC+TGG - chr6_1:103746067-103746086 None:intergenic 55.0%
AGCAGCAACTGCTGAAGCAG+AGG + chr6_1:103745537-103745556 Msa0902850:five_prime_UTR 55.0%
!! GGGTGTGAATTCTAAGGCCG+AGG + chr6_1:103745624-103745643 Msa0902850:CDS 55.0%
GAGAGAAGGAGGAGCAGTAC+TGG + chr6_1:103745701-103745720 Msa0902850:CDS 55.0%
CTCTTCCTCCCTCTTCTTGG+CGG - chr6_1:103745755-103745774 None:intergenic 55.0%
CAAGAAGAGGGAGGAAGAGG+CGG + chr6_1:103745756-103745775 Msa0902850:CDS 55.0%
GGAGGAAGAGGCGGATAAGA+AGG + chr6_1:103745765-103745784 Msa0902850:CDS 55.0%
GGAAGAGGCGGATAAGAAGG+CGG + chr6_1:103745768-103745787 Msa0902850:CDS 55.0%
GGTGTCTATCCCTGTACCGA+AGG + chr6_1:103745888-103745907 Msa0902850:CDS 55.0%
TATGGCACAGAAGAAGGCGG+AGG + chr6_1:103745954-103745973 Msa0902850:CDS 55.0%
GAAGCGAAGAAGAGGACTGC+TGG + chr6_1:103745976-103745995 Msa0902850:CDS 55.0%
AGCGAAGAAGAGGACTGCTG+GGG + chr6_1:103745978-103745997 Msa0902850:CDS 55.0%
! GATGGCTTCGTCAAGAGTGC+TGG - chr6_1:103746067-103746086 None:intergenic 55.0%
CCTAGTAGGGTTTCGCTCGC+TGG - chr6_1:103745580-103745599 None:intergenic 60.0%
CCAGCGAGCGAAACCCTACT+AGG + chr6_1:103745577-103745596 Msa0902850:five_prime_UTR 60.0%
CGCCGCGGAAACGGAGAAAA+AGG + chr6_1:103745666-103745685 Msa0902850:CDS 60.0%
GGATCGGGAGACTCGAGAGA+AGG + chr6_1:103745687-103745706 Msa0902850:CDS 60.0%
TCGGGAGACTCGAGAGAAGG+AGG + chr6_1:103745690-103745709 Msa0902850:CDS 60.0%
CGCCAAGAAGAGGGAGGAAG+AGG + chr6_1:103745753-103745772 Msa0902850:CDS 60.0%
CGCCTCTTCCTCCCTCTTCT+TGG - chr6_1:103745758-103745777 None:intergenic 60.0%
AGAGGCGGATAAGAAGGCGG+AGG + chr6_1:103745771-103745790 Msa0902850:CDS 60.0%
GGAGCTGGAGGAGAAAGAGC+TGG + chr6_1:103745828-103745847 Msa0902850:CDS 60.0%
CCTCCGTCACCTTCGGTACA+GGG - chr6_1:103745900-103745919 None:intergenic 60.0%
!! TGTACCGAAGGTGACGGAGG+CGG + chr6_1:103745900-103745919 Msa0902850:CDS 60.0%
GCGAGAGGAGGAGCAAGCTA+TGG + chr6_1:103745936-103745955 Msa0902850:CDS 60.0%
AGGCGGAGGAAGCGAAGAAG+AGG + chr6_1:103745968-103745987 Msa0902850:CDS 60.0%
GAAGAAGAGGACTGCTGGGG+AGG + chr6_1:103745981-103746000 Msa0902850:CDS 60.0%
! GGAGGAGGAGTACGAGAGAG+TGG + chr6_1:103745999-103746018 Msa0902850:CDS 60.0%
GCGCCTCAAGGCTTCCTTCA+AGG + chr6_1:103746137-103746156 Msa0902850:CDS 60.0%
CCTAGTAGGGTTTCGCTCGC+TGG - chr6_1:103745580-103745599 None:intergenic 60.0%
CCAGCGAGCGAAACCCTACT+AGG + chr6_1:103745577-103745596 Msa0902850:five_prime_UTR 60.0%
CGCCGCGGAAACGGAGAAAA+AGG + chr6_1:103745666-103745685 Msa0902850:CDS 60.0%
GGATCGGGAGACTCGAGAGA+AGG + chr6_1:103745687-103745706 Msa0902850:CDS 60.0%
TCGGGAGACTCGAGAGAAGG+AGG + chr6_1:103745690-103745709 Msa0902850:CDS 60.0%
CGCCAAGAAGAGGGAGGAAG+AGG + chr6_1:103745753-103745772 Msa0902850:CDS 60.0%
CGCCTCTTCCTCCCTCTTCT+TGG - chr6_1:103745758-103745777 None:intergenic 60.0%
AGAGGCGGATAAGAAGGCGG+AGG + chr6_1:103745771-103745790 Msa0902850:CDS 60.0%
GGAGCTGGAGGAGAAAGAGC+TGG + chr6_1:103745828-103745847 Msa0902850:CDS 60.0%
CCTCCGTCACCTTCGGTACA+GGG - chr6_1:103745900-103745919 None:intergenic 60.0%
!! TGTACCGAAGGTGACGGAGG+CGG + chr6_1:103745900-103745919 Msa0902850:CDS 60.0%
GCGAGAGGAGGAGCAAGCTA+TGG + chr6_1:103745936-103745955 Msa0902850:CDS 60.0%
AGGCGGAGGAAGCGAAGAAG+AGG + chr6_1:103745968-103745987 Msa0902850:CDS 60.0%
GAAGAAGAGGACTGCTGGGG+AGG + chr6_1:103745981-103746000 Msa0902850:CDS 60.0%
! GGAGGAGGAGTACGAGAGAG+TGG + chr6_1:103745999-103746018 Msa0902850:CDS 60.0%
GCGCCTCAAGGCTTCCTTCA+AGG + chr6_1:103746137-103746156 Msa0902850:CDS 60.0%
!! ATTCTAAGGCCGAGGCGGCG+AGG + chr6_1:103745632-103745651 Msa0902850:CDS 65.0%
!! TTCTAAGGCCGAGGCGGCGA+GGG + chr6_1:103745633-103745652 Msa0902850:CDS 65.0%
!! GGAGGAGCAGTACTGGCGAG+AGG + chr6_1:103745708-103745727 Msa0902850:CDS 65.0%
GGCGGATAAGAAGGCGGAGG+CGG + chr6_1:103745774-103745793 Msa0902850:CDS 65.0%
GGATAAGAAGGCGGAGGCGG+CGG + chr6_1:103745777-103745796 Msa0902850:CDS 65.0%
! ACGAGCGGAGGTGCGTCGAT+TGG + chr6_1:103745804-103745823 Msa0902850:CDS 65.0%
!! AGCGGAGGTGCGTCGATTGG+CGG + chr6_1:103745807-103745826 Msa0902850:CDS 65.0%
! CCCTGTACCGAAGGTGACGG+AGG + chr6_1:103745897-103745916 Msa0902850:CDS 65.0%
GCCTCCGTCACCTTCGGTAC+AGG - chr6_1:103745901-103745920 None:intergenic 65.0%
AGCTCCGCCTCCGTCACCTT+CGG - chr6_1:103745907-103745926 None:intergenic 65.0%
GAAGAGGACTGCTGGGGAGG+AGG + chr6_1:103745984-103746003 Msa0902850:CDS 65.0%
CTCTCTGGATGCCTGTCGGG+AGG - chr6_1:103746117-103746136 None:intergenic 65.0%
CTCCCGACAGGCATCCAGAG+AGG + chr6_1:103746115-103746134 Msa0902850:CDS 65.0%
CGCCTCTCTGGATGCCTGTC+GGG - chr6_1:103746120-103746139 None:intergenic 65.0%
GCGCCTCTCTGGATGCCTGT+CGG - chr6_1:103746121-103746140 None:intergenic 65.0%
!! GCATCCAGAGAGGCGCCTCA+AGG + chr6_1:103746125-103746144 Msa0902850:CDS 65.0%
! GAAGCCTTGAGGCGCCTCTC+TGG - chr6_1:103746132-103746151 None:intergenic 65.0%
!! ATTCTAAGGCCGAGGCGGCG+AGG + chr6_1:103745632-103745651 Msa0902850:CDS 65.0%
!! TTCTAAGGCCGAGGCGGCGA+GGG + chr6_1:103745633-103745652 Msa0902850:CDS 65.0%
!! GGAGGAGCAGTACTGGCGAG+AGG + chr6_1:103745708-103745727 Msa0902850:CDS 65.0%
GGCGGATAAGAAGGCGGAGG+CGG + chr6_1:103745774-103745793 Msa0902850:CDS 65.0%
GGATAAGAAGGCGGAGGCGG+CGG + chr6_1:103745777-103745796 Msa0902850:CDS 65.0%
! ACGAGCGGAGGTGCGTCGAT+TGG + chr6_1:103745804-103745823 Msa0902850:CDS 65.0%
!! AGCGGAGGTGCGTCGATTGG+CGG + chr6_1:103745807-103745826 Msa0902850:CDS 65.0%
! CCCTGTACCGAAGGTGACGG+AGG + chr6_1:103745897-103745916 Msa0902850:CDS 65.0%
GCCTCCGTCACCTTCGGTAC+AGG - chr6_1:103745901-103745920 None:intergenic 65.0%
AGCTCCGCCTCCGTCACCTT+CGG - chr6_1:103745907-103745926 None:intergenic 65.0%
GAAGAGGACTGCTGGGGAGG+AGG + chr6_1:103745984-103746003 Msa0902850:CDS 65.0%
CTCTCTGGATGCCTGTCGGG+AGG - chr6_1:103746117-103746136 None:intergenic 65.0%
CTCCCGACAGGCATCCAGAG+AGG + chr6_1:103746115-103746134 Msa0902850:CDS 65.0%
CGCCTCTCTGGATGCCTGTC+GGG - chr6_1:103746120-103746139 None:intergenic 65.0%
GCGCCTCTCTGGATGCCTGT+CGG - chr6_1:103746121-103746140 None:intergenic 65.0%
!! GCATCCAGAGAGGCGCCTCA+AGG + chr6_1:103746125-103746144 Msa0902850:CDS 65.0%
! GAAGCCTTGAGGCGCCTCTC+TGG - chr6_1:103746132-103746151 None:intergenic 65.0%
CGTTTCCGCGGCGCTCTTGC+GGG - chr6_1:103745659-103745678 None:intergenic 70.0%
CCGTTTCCGCGGCGCTCTTG+CGG - chr6_1:103745660-103745679 None:intergenic 70.0%
!! CCGCAAGAGCGCCGCGGAAA+CGG + chr6_1:103745657-103745676 Msa0902850:CDS 70.0%
AGCCACGCGCCGCCAAGAAG+AGG + chr6_1:103745743-103745762 Msa0902850:CDS 70.0%
GCCACGCGCCGCCAAGAAGA+GGG + chr6_1:103745744-103745763 Msa0902850:CDS 70.0%
TCCCTCTTCTTGGCGGCGCG+TGG - chr6_1:103745748-103745767 None:intergenic 70.0%
ACGCGCCGCCAAGAAGAGGG+AGG + chr6_1:103745747-103745766 Msa0902850:CDS 70.0%
!! GGTGCGTCGATTGGCGGAGC+TGG + chr6_1:103745813-103745832 Msa0902850:CDS 70.0%
!! GCGTCGATTGGCGGAGCTGG+AGG + chr6_1:103745816-103745835 Msa0902850:CDS 70.0%
!! AGGTGACGGAGGCGGAGCTG+AGG + chr6_1:103745908-103745927 Msa0902850:CDS 70.0%
CGGAGGCGGAGCTGAGGAAG+CGG + chr6_1:103745914-103745933 Msa0902850:CDS 70.0%
GGAGCTGAGGAAGCGGCGAG+AGG + chr6_1:103745921-103745940 Msa0902850:CDS 70.0%
GCTGAGGAAGCGGCGAGAGG+AGG + chr6_1:103745924-103745943 Msa0902850:CDS 70.0%
CGTTTCCGCGGCGCTCTTGC+GGG - chr6_1:103745659-103745678 None:intergenic 70.0%
CCGTTTCCGCGGCGCTCTTG+CGG - chr6_1:103745660-103745679 None:intergenic 70.0%
!! CCGCAAGAGCGCCGCGGAAA+CGG + chr6_1:103745657-103745676 Msa0902850:CDS 70.0%
AGCCACGCGCCGCCAAGAAG+AGG + chr6_1:103745743-103745762 Msa0902850:CDS 70.0%
GCCACGCGCCGCCAAGAAGA+GGG + chr6_1:103745744-103745763 Msa0902850:CDS 70.0%
TCCCTCTTCTTGGCGGCGCG+TGG - chr6_1:103745748-103745767 None:intergenic 70.0%
ACGCGCCGCCAAGAAGAGGG+AGG + chr6_1:103745747-103745766 Msa0902850:CDS 70.0%
!! GGTGCGTCGATTGGCGGAGC+TGG + chr6_1:103745813-103745832 Msa0902850:CDS 70.0%
!! GCGTCGATTGGCGGAGCTGG+AGG + chr6_1:103745816-103745835 Msa0902850:CDS 70.0%
!! AGGTGACGGAGGCGGAGCTG+AGG + chr6_1:103745908-103745927 Msa0902850:CDS 70.0%
CGGAGGCGGAGCTGAGGAAG+CGG + chr6_1:103745914-103745933 Msa0902850:CDS 70.0%
GGAGCTGAGGAAGCGGCGAG+AGG + chr6_1:103745921-103745940 Msa0902850:CDS 70.0%
GCTGAGGAAGCGGCGAGAGG+AGG + chr6_1:103745924-103745943 Msa0902850:CDS 70.0%
! CTTGCGGGCCCTCGCCGCCT+CGG - chr6_1:103745644-103745663 None:intergenic 80.0%
!!! GAGGGCCCGCAAGAGCGCCG+CGG + chr6_1:103745651-103745670 Msa0902850:CDS 80.0%
! GGAGGCGGCGGCACGACGAG+CGG + chr6_1:103745789-103745808 Msa0902850:CDS 80.0%
! CTTGCGGGCCCTCGCCGCCT+CGG - chr6_1:103745644-103745663 None:intergenic 80.0%
!!! GAGGGCCCGCAAGAGCGCCG+CGG + chr6_1:103745651-103745670 Msa0902850:CDS 80.0%
! GGAGGCGGCGGCACGACGAG+CGG + chr6_1:103745789-103745808 Msa0902850:CDS 80.0%
! GGCGGCGGCACGACGAGCGG+AGG + chr6_1:103745792-103745811 Msa0902850:CDS 85.0%
! GGCGGCGGCACGACGAGCGG+AGG + chr6_1:103745792-103745811 Msa0902850:CDS 85.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 103745518 103746677 103745518 ID=Msa0902850;Name=Msa0902850
chr6_1 mRNA 103745518 103746677 103745518 ID=Msa0902850-mRNA-1;Parent=Msa0902850;Name=Msa0902850-mRNA-1;_AED=0.03;_eAED=0.03;_QI=92|1|1|1|1|1|3|219|227
chr6_1 exon 103745518 103746158 103745518 ID=Msa0902850-mRNA-1:exon:18065;Parent=Msa0902850-mRNA-1
chr6_1 exon 103746235 103746354 103746235 ID=Msa0902850-mRNA-1:exon:18066;Parent=Msa0902850-mRNA-1
chr6_1 exon 103746444 103746677 103746444 ID=Msa0902850-mRNA-1:exon:18067;Parent=Msa0902850-mRNA-1
chr6_1 five_prime_UTR 103745518 103745609 103745518 ID=Msa0902850-mRNA-1:five_prime_utr;Parent=Msa0902850-mRNA-1
chr6_1 CDS 103745610 103746158 103745610 ID=Msa0902850-mRNA-1:cds;Parent=Msa0902850-mRNA-1
chr6_1 CDS 103746235 103746354 103746235 ID=Msa0902850-mRNA-1:cds;Parent=Msa0902850-mRNA-1
chr6_1 CDS 103746444 103746458 103746444 ID=Msa0902850-mRNA-1:cds;Parent=Msa0902850-mRNA-1
chr6_1 three_prime_UTR 103746459 103746677 103746459 ID=Msa0902850-mRNA-1:three_prime_utr;Parent=Msa0902850-mRNA-1
Gene Sequence

>Msa0902850

ATGCCCAAAAAGATGGGTGTGAATTCTAAGGCCGAGGCGGCGAGGGCCCGCAAGAGCGCCGCGGAAACGGAGAAAAAGGATCGGGAGACTCGAGAGAAGGAGGAGCAGTACTGGCGAGAGGCAGAGAGTTCAAAGCCACGCGCCGCCAAGAAGAGGGAGGAAGAGGCGGATAAGAAGGCGGAGGCGGCGGCACGACGAGCGGAGGTGCGTCGATTGGCGGAGCTGGAGGAGAAAGAGCTGGAGAAGATGATTAAAAAGCCTGACAAGAAGGCAAACAGGGTGTCTATCCCTGTACCGAAGGTGACGGAGGCGGAGCTGAGGAAGCGGCGAGAGGAGGAGCAAGCTATGGCACAGAAGAAGGCGGAGGAAGCGAAGAAGAGGACTGCTGGGGAGGAGGAGTACGAGAGAGTGGTGCTTGTGTCGAATACGAATCGTGATGATTCAATTATCGAAGCCAGCACTCTTGACGAAGCCATCGCTCAGATGAGTATCGATAACAACTTACCTCCCGACAGGCATCCAGAGAGGCGCCTCAAGGCTTCCTTCAAGGCATTTGAAGAAGCTGAACTACCTAAGTTGAAGCAAGAGAAACCAGGGCTTACATACACACAGTACAAGGACATGATTTGGAAGCTTTGGAAGAAATCTCCTGACAATCCTCTTAATCAAATTGCTGCCGAGTGA
Protein sequence

>Msa0902850

MPKKMGVNSKAEAARARKSAAETEKKDRETREKEEQYWREAESSKPRAAKKREEEADKKAEAAARRAEVRRLAELEEKELEKMIKKPDKKANRVSIPVPKVTEAELRKRREEEQAMAQKKAEEAKKRTAGEEEYERVVLVSNTNRDDSIIEASTLDEAIAQMSIDNNLPPDRHPERRLKASFKAFEEAELPKLKQEKPGLTYTQYKDMIWKLWKKSPDNPLNQIAAE*