AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1429420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429420 MtrunA17_Chr1g0146631 95.385 325 15 0 1 325 1 325 0.0 647
Msa1429420 MtrunA17_Chr1g0147331 95.692 325 14 0 1 325 1 325 0.0 620
Msa1429420 MtrunA17_Chr1g0147311 73.353 334 76 6 1 325 27 356 1.04e-174 488
Msa1429420 MtrunA17_Chr1g0147271 63.496 389 74 7 1 325 1 385 1.24e-164 464
Msa1429420 MtrunA17_Chr1g0147291 75.465 269 59 5 61 325 2 267 1.69e-142 403
Msa1429420 MtrunA17_Chr1g0147261 62.883 326 94 5 1 325 1 300 3.26e-142 403
Msa1429420 MtrunA17_Chr1g0147301 69.896 289 77 6 43 325 1 285 4.17e-142 402
Msa1429420 MtrunA17_Chr3g0139431 59.939 327 120 6 1 323 1 320 2.80e-141 402
Msa1429420 MtrunA17_Chr1g0147241 62.577 326 108 5 1 325 1 313 7.91e-139 395
Msa1429420 MtrunA17_Chr1g0147321 78.319 226 46 2 98 322 12 235 2.29e-129 369
Msa1429420 MtrunA17_Chr1g0147251 65.587 247 76 4 84 325 1 243 4.44e-109 317
Msa1429420 MtrunA17_Chr3g0138231 42.411 224 122 4 108 325 45 267 1.53e-55 182
Msa1429420 MtrunA17_Chr4g0034821 42.857 224 121 5 108 325 70 292 3.63e-54 179
Msa1429420 MtrunA17_Chr3g0144451 40.179 224 127 4 108 325 54 276 5.57e-53 175
Msa1429420 MtrunA17_Chr3g0144421 42.342 222 120 6 108 323 82 301 7.22e-53 176
Msa1429420 MtrunA17_Chr3g0144411 39.070 215 123 4 113 322 325 536 1.43e-44 159
Msa1429420 MtrunA17_Chr3g0144391 38.605 215 124 4 113 322 292 503 4.83e-44 157
Msa1429420 MtrunA17_Chr4g0034451 36.441 236 139 7 95 323 294 525 8.19e-42 152
Msa1429420 MtrunA17_Chr4g0034731 37.156 218 127 6 113 323 217 431 1.02e-40 147
Msa1429420 MtrunA17_Chr4g0034721 36.697 218 128 6 113 323 361 575 5.96e-39 145
Msa1429420 MtrunA17_Chr8g0355861 30.031 323 162 9 1 323 1 259 3.43e-38 137
Msa1429420 MtrunA17_Chr8g0365361 36.279 215 129 4 113 322 181 392 5.87e-38 139
Msa1429420 MtrunA17_Chr2g0318901 29.721 323 155 12 4 323 5 258 1.74e-37 135
Msa1429420 MtrunA17_Chr2g0318871 29.595 321 158 11 4 323 5 258 9.17e-36 130
Msa1429420 MtrunA17_Chr8g0355311 44.755 143 73 4 181 323 53 189 1.86e-35 127
Msa1429420 MtrunA17_Chr4g0034691 35.321 218 131 6 113 323 493 707 1.91e-35 135
Msa1429420 MtrunA17_Chr5g0413591 33.333 213 138 4 113 322 415 626 9.16e-35 133
Msa1429420 MtrunA17_Chr8g0365401 34.579 214 134 4 113 322 412 623 2.97e-34 132
Msa1429420 MtrunA17_Chr8g0355871 38.073 218 103 9 112 323 30 221 6.82e-34 124
Msa1429420 MtrunA17_Chr8g0355331 40.260 154 86 4 170 323 273 420 7.00e-33 126
Msa1429420 MtrunA17_Chr2g0318931 28.571 301 148 10 26 323 33 269 1.07e-32 122
Msa1429420 MtrunA17_Chr8g0355841 44.755 143 73 4 181 323 372 508 2.08e-32 126
Msa1429420 MtrunA17_Chr8g0355321 41.958 143 77 4 181 323 165 301 2.42e-32 122
Msa1429420 MtrunA17_Chr3g0117791 33.953 215 134 4 113 322 413 624 2.79e-32 126
Msa1429420 MtrunA17_Chr6g0485051 33.493 209 128 7 125 325 1 206 8.64e-32 118
Msa1429420 MtrunA17_Chr8g0365381 33.333 213 138 4 113 322 429 640 1.22e-31 124
Msa1429420 MtrunA17_Chr1g0147231 71.605 81 22 1 99 178 50 130 2.03e-31 115
Msa1429420 MtrunA17_Chr1g0168781 27.607 326 165 10 1 323 1 258 4.58e-31 117
Msa1429420 MtrunA17_Chr8g0355831 42.759 145 77 4 179 323 212 350 1.72e-29 115
Msa1429420 MtrunA17_Chr4g0076231 35.065 154 97 3 172 322 3 156 6.47e-28 106
Msa1429420 MtrunA17_Chr5g0412981 26.852 216 152 4 111 322 195 408 9.37e-22 95.1
Msa1429420 MtrunA17_Chr5g0412981 26.344 186 129 5 127 306 1 184 3.20e-13 70.1
Msa1429420 MtrunA17_Chr5g0412991 26.852 216 152 4 111 322 195 408 1.01e-21 94.7
Msa1429420 MtrunA17_Chr5g0412991 25.806 186 130 5 127 306 1 184 6.86e-13 68.9
Msa1429420 MtrunA17_Chr1g0147281 74.000 50 13 0 1 50 1 50 1.07e-19 82.0
Msa1429420 MtrunA17_Chr8g0371951 43.038 79 41 2 238 313 10 87 2.69e-17 75.9
Msa1429420 MtrunA17_Chr5g0412951 24.519 208 151 4 119 322 2 207 8.11e-17 77.8
Msa1429420 MtrunA17_Chr4g0034051 42.105 76 41 3 251 323 3 78 2.16e-16 73.2
Msa1429420 MtrunA17_Chr5g0413021 29.457 129 86 3 197 322 1 127 5.53e-14 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429420 AT5G25610.1 44.103 390 141 11 5 323 7 390 1.48e-99 299
Msa1429420 AT1G49320.1 37.662 231 132 6 106 325 51 280 7.28e-47 160
Msa1429420 AT1G60390.1 36.111 216 128 5 113 322 409 620 1.32e-34 133
Msa1429420 AT1G70370.2 35.514 214 132 4 113 322 411 622 2.35e-33 130
Msa1429420 AT1G70370.1 35.514 214 132 4 113 322 411 622 2.35e-33 130
Msa1429420 AT1G23760.1 34.112 214 135 4 113 322 407 618 1.01e-30 122

Find 73 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGATAGTCTTTACTCTTT+TGG 0.187775 tig0026502:-32059 None:intergenic
ACTTGAAATGCCAAATGTTT+TGG 0.214978 tig0026502:-33673 None:intergenic
AAATGTAGCACTCTTCTTTC+TGG 0.227762 tig0026502:+33117 Msa1429420:CDS
TCTTACCTCCTCAACTTTAC+TGG 0.262120 tig0026502:+32286 Msa1429420:CDS
TCAGCTTCACTTATCCAATA+TGG 0.269907 tig0026502:+32099 Msa1429420:exon
TAAACTGTGAAACTGATTCT+AGG 0.284637 tig0026502:+33832 Msa1429420:three_prime_UTR
ATTTATCTGAAGCTGGATAT+TGG 0.302370 tig0026502:+32930 Msa1429420:intron
GCAGCATAATTATAAATAAA+TGG 0.303775 tig0026502:-33067 None:intergenic
TGTAACATCATTGGAGTCTA+TGG 0.322922 tig0026502:+33372 Msa1429420:CDS
TGCCTGAGGATCATGTTGTT+TGG 0.331746 tig0026502:+33737 Msa1429420:CDS
AGCAGATTAGTGATGGCTTT+TGG 0.347892 tig0026502:-32336 None:intergenic
TTCCACCTTGTTTGATGAAA+AGG 0.348656 tig0026502:-33239 None:intergenic
TAAAGCTTACTCTGTGCCTT+TGG 0.361974 tig0026502:+33585 Msa1429420:CDS
AACAAGATGAAAATCCATAT+TGG 0.372048 tig0026502:-32113 None:intergenic
AAAGCTTTGTGTAACATCAT+TGG 0.398015 tig0026502:+33363 Msa1429420:CDS
TGACAGTAAAACACTGCATA+AGG 0.401155 tig0026502:-33547 None:intergenic
TATTCTTGGATGACACCAAT+AGG 0.404945 tig0026502:-33784 None:intergenic
AGCTTACTCTGTGCCTTTGG+AGG 0.418522 tig0026502:+33588 Msa1429420:CDS
TCAGGCAGGAGGTGACAAAC+TGG 0.434507 tig0026502:-33721 None:intergenic
AGAAAGAAGAGTGCTACATT+TGG 0.440436 tig0026502:-33115 None:intergenic
CAGCAATATACAATAGCATC+TGG 0.447095 tig0026502:+33469 Msa1429420:CDS
GTGCCTTTGGAGGGTGCTGA+TGG 0.447611 tig0026502:+33598 Msa1429420:CDS
TCCACCTTGTTTGATGAAAA+GGG 0.448369 tig0026502:-33238 None:intergenic
AGAATGGAACCCAAAACATT+TGG 0.452431 tig0026502:+33663 Msa1429420:CDS
AGCACTCTTCTTTCTGGAAA+AGG 0.453598 tig0026502:+33123 Msa1429420:CDS
TCAAATGTAGCTTGTGGTAG+TGG 0.457950 tig0026502:+32248 Msa1429420:intron
TAGAAACAAACAAATCCTAT+TGG 0.458383 tig0026502:+33769 Msa1429420:exon
CTGGAAAAGGACTTGCATCA+TGG 0.459024 tig0026502:+33136 Msa1429420:CDS
GATTTCACTACTTCAAAGCT+TGG 0.470526 tig0026502:+33397 Msa1429420:CDS
GCTTACTCTGTGCCTTTGGA+GGG 0.480708 tig0026502:+33589 Msa1429420:CDS
TGTGAAGAGCAAGGGATCAA+AGG 0.490839 tig0026502:+33334 Msa1429420:CDS
CAAGTACTCAAAGTTCAACC+TGG 0.499411 tig0026502:+33691 Msa1429420:CDS
ATGATCAGGAGAAGTTGAGA+TGG 0.502447 tig0026502:-32031 None:intergenic
GCATCTGGAGTGAAGAAGTT+GGG 0.513820 tig0026502:+33484 Msa1429420:CDS
ATCCAAACAACATGATCCTC+AGG 0.517927 tig0026502:-33739 None:intergenic
GGAGTGAAGAGAAAGGAACT+TGG 0.518251 tig0026502:+32951 Msa1429420:CDS
GTCAGAAAGGGATACTATGA+AGG 0.523139 tig0026502:+33007 Msa1429420:CDS
GACAGTAAAACACTGCATAA+GGG 0.527238 tig0026502:-33546 None:intergenic
GGCAAGGGTGGTGTAGATGT+TGG 0.529745 tig0026502:+32983 Msa1429420:CDS
AAAATCAAGAAAGGGTCAAA+GGG 0.531552 tig0026502:+33280 Msa1429420:CDS
AGCATCTGGAGTGAAGAAGT+TGG 0.536857 tig0026502:+33483 Msa1429420:CDS
TGTAGATGTTGGAGTCAGAA+AGG 0.539383 tig0026502:+32994 Msa1429420:CDS
CATTGAAGAGGTGGGAAGCA+TGG 0.540494 tig0026502:-32313 None:intergenic
TGACAAACTGGAACAGTCCC+AGG 0.541759 tig0026502:-33709 None:intergenic
AAAGGAACTTGGGTGGATGT+AGG 0.554611 tig0026502:+32962 Msa1429420:CDS
GGATATTGGAGTGAAGAGAA+AGG 0.556237 tig0026502:+32944 Msa1429420:CDS
AACTTGGGTGGATGTAGGCA+AGG 0.557293 tig0026502:+32967 Msa1429420:CDS
AGTTTGTCACCTCCTGCCTG+AGG 0.562196 tig0026502:+33723 Msa1429420:CDS
GTAGATGTTGGAGTCAGAAA+GGG 0.562316 tig0026502:+32995 Msa1429420:CDS
GTCAGTGAGTGTGAAGAGCA+AGG 0.568006 tig0026502:+33325 Msa1429420:CDS
CTTCCATCAGCACCCTCCAA+AGG 0.576677 tig0026502:-33601 None:intergenic
TGAAGAGAAAGGAACTTGGG+TGG 0.577433 tig0026502:+32955 Msa1429420:CDS
TTGCTCTTCACACTCACTGA+CGG 0.578201 tig0026502:-33323 None:intergenic
TGGGTGGATGTAGGCAAGGG+TGG 0.579389 tig0026502:+32971 Msa1429420:CDS
GAGTGAAGAGAAAGGAACTT+GGG 0.579403 tig0026502:+32952 Msa1429420:CDS
GGTGGCTCTGATGTGAATGT+TGG 0.588281 tig0026502:+33031 Msa1429420:CDS
TCAGTGAGTGTGAAGAGCAA+GGG 0.599484 tig0026502:+33326 Msa1429420:CDS
AAGGGATACTATGAAGGAGG+TGG 0.599632 tig0026502:+33013 Msa1429420:CDS
AACTTGGCGCGGCAAGAATG+TGG 0.603165 tig0026502:-33203 None:intergenic
GACTTCCAGTAAAGTTGAGG+AGG 0.605659 tig0026502:-32291 None:intergenic
GTCACACTGATACATCAGAA+TGG 0.606500 tig0026502:+33647 Msa1429420:CDS
AAACAACATGATCCTCAGGC+AGG 0.608017 tig0026502:-33735 None:intergenic
TCTGATGTGAATGTTGGAGT+TGG 0.609740 tig0026502:+33037 Msa1429420:CDS
ATGGACTTCCAGTAAAGTTG+AGG 0.616898 tig0026502:-32294 None:intergenic
AGGGTATTGAATTAGCAACT+TGG 0.619732 tig0026502:-33219 None:intergenic
AAGTACTCAAAGTTCAACCT+GGG 0.622856 tig0026502:+33692 Msa1429420:CDS
AGGGTGTAGCAGATTAGTGA+TGG 0.623388 tig0026502:-32343 None:intergenic
ATTGAATTAGCAACTTGGCG+CGG 0.637675 tig0026502:-33214 None:intergenic
CAACATGATCCTCAGGCAGG+AGG 0.654087 tig0026502:-33732 None:intergenic
ACTTGGGTGGATGTAGGCAA+GGG 0.659855 tig0026502:+32968 Msa1429420:CDS
ATCACTAATCTGCTACACCC+TGG 0.665412 tig0026502:+32345 Msa1429420:CDS
AGAGCAAGGGATCAAAGGAG+AGG 0.677572 tig0026502:+33339 Msa1429420:CDS
AGAAAGGGATACTATGAAGG+AGG 0.679610 tig0026502:+33010 Msa1429420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAATTATTTGAAGAAAAT+TGG - tig0026502:32185-32204 None:intergenic 15.0%
!!! ATACTCATTTTATATATAGA+TGG + tig0026502:32417-32436 Msa1429420:intron 15.0%
!!! GTTTAAAATGATTTCATTTT+AGG + tig0026502:32456-32475 Msa1429420:intron 15.0%
!! AAATAAATAAACCAAGTAAT+TGG + tig0026502:32719-32738 Msa1429420:intron 15.0%
!! AATAAATAAACCAAGTAATT+GGG + tig0026502:32720-32739 Msa1429420:intron 15.0%
!! TTAAATAAATAAAAAGTCTG+TGG + tig0026502:32853-32872 Msa1429420:intron 15.0%
!! GTTAATTATTTGAAGAAAAT+TGG - tig0026502:32185-32204 None:intergenic 15.0%
!!! ATACTCATTTTATATATAGA+TGG + tig0026502:32417-32436 Msa1429420:intron 15.0%
!!! GTTTAAAATGATTTCATTTT+AGG + tig0026502:32456-32475 Msa1429420:intron 15.0%
!! AAATAAATAAACCAAGTAAT+TGG + tig0026502:32719-32738 Msa1429420:intron 15.0%
!! AATAAATAAACCAAGTAATT+GGG + tig0026502:32720-32739 Msa1429420:intron 15.0%
!! TTAAATAAATAAAAAGTCTG+TGG + tig0026502:32853-32872 Msa1429420:intron 15.0%
!!! GACTATCTTTTTTTTTTCTT+TGG + tig0026502:32072-32091 Msa1429420:five_prime_UTR 20.0%
!!! ATGAAATCATTTTAAACACA+TGG - tig0026502:32453-32472 None:intergenic 20.0%
!! GCAGCATAATTATAAATAAA+TGG - tig0026502:33070-33089 None:intergenic 20.0%
!! AACAAGTTAAAAATCAAGAA+AGG + tig0026502:33271-33290 Msa1429420:CDS 20.0%
!! ACAAGTTAAAAATCAAGAAA+GGG + tig0026502:33272-33291 Msa1429420:CDS 20.0%
!!! TGTTTTACTTTTACAGTTTT+AGG + tig0026502:33936-33955 Msa1429420:three_prime_UTR 20.0%
!!! GACTATCTTTTTTTTTTCTT+TGG + tig0026502:32072-32091 Msa1429420:five_prime_UTR 20.0%
!!! ATGAAATCATTTTAAACACA+TGG - tig0026502:32453-32472 None:intergenic 20.0%
!! GCAGCATAATTATAAATAAA+TGG - tig0026502:33070-33089 None:intergenic 20.0%
!! AACAAGTTAAAAATCAAGAA+AGG + tig0026502:33271-33290 Msa1429420:CDS 20.0%
!! ACAAGTTAAAAATCAAGAAA+GGG + tig0026502:33272-33291 Msa1429420:CDS 20.0%
!!! TGTTTTACTTTTACAGTTTT+AGG + tig0026502:33936-33955 Msa1429420:three_prime_UTR 20.0%
!! AAAGATAGTCTTTACTCTTT+TGG - tig0026502:32062-32081 None:intergenic 25.0%
! AACAAGATGAAAATCCATAT+TGG - tig0026502:32116-32135 None:intergenic 25.0%
! ACCATGAAAAAAGTAATGAT+GGG - tig0026502:32139-32158 None:intergenic 25.0%
! ATTTAATTCATGCACATTGT+CGG + tig0026502:32479-32498 Msa1429420:intron 25.0%
! AAAGGACTTATGATATATGA+AGG + tig0026502:32686-32705 Msa1429420:intron 25.0%
!!! TATTTTTTGTGTTAACTCTC+CGG - tig0026502:32833-32852 None:intergenic 25.0%
! TAGAAACAAACAAATCCTAT+TGG + tig0026502:33769-33788 Msa1429420:exon 25.0%
! AAAAACTGTGTAACTATTCT+TGG - tig0026502:33801-33820 None:intergenic 25.0%
!! ATACAGTGAAGCTTTTTATT+TGG + tig0026502:34003-34022 Msa1429420:three_prime_UTR 25.0%
!!! TACAGTGAAGCTTTTTATTT+GGG + tig0026502:34004-34023 Msa1429420:three_prime_UTR 25.0%
!! AAAGATAGTCTTTACTCTTT+TGG - tig0026502:32062-32081 None:intergenic 25.0%
! AACAAGATGAAAATCCATAT+TGG - tig0026502:32116-32135 None:intergenic 25.0%
! ACCATGAAAAAAGTAATGAT+GGG - tig0026502:32139-32158 None:intergenic 25.0%
! ATTTAATTCATGCACATTGT+CGG + tig0026502:32479-32498 Msa1429420:intron 25.0%
! AAAGGACTTATGATATATGA+AGG + tig0026502:32686-32705 Msa1429420:intron 25.0%
!!! TATTTTTTGTGTTAACTCTC+CGG - tig0026502:32833-32852 None:intergenic 25.0%
! TAGAAACAAACAAATCCTAT+TGG + tig0026502:33769-33788 Msa1429420:exon 25.0%
! AAAAACTGTGTAACTATTCT+TGG - tig0026502:33801-33820 None:intergenic 25.0%
!! ATACAGTGAAGCTTTTTATT+TGG + tig0026502:34003-34022 Msa1429420:three_prime_UTR 25.0%
!!! TACAGTGAAGCTTTTTATTT+GGG + tig0026502:34004-34023 Msa1429420:three_prime_UTR 25.0%
GAGATGGAATGAAAAAACAA+AGG - tig0026502:32018-32037 None:intergenic 30.0%
!!! TCCCATCATTACTTTTTTCA+TGG + tig0026502:32135-32154 Msa1429420:CDS 30.0%
CACCATGAAAAAAGTAATGA+TGG - tig0026502:32140-32159 None:intergenic 30.0%
TTGAATTATTCGTCATAGAG+AGG - tig0026502:32763-32782 None:intergenic 30.0%
!!! ATTTTTTGTGTTAACTCTCC+GGG - tig0026502:32832-32851 None:intergenic 30.0%
! TTACTCTATTTATCTGAAGC+TGG + tig0026502:32923-32942 Msa1429420:intron 30.0%
! ATTTATCTGAAGCTGGATAT+TGG + tig0026502:32930-32949 Msa1429420:intron 30.0%
! AATACCCTTTTCATCAAACA+AGG + tig0026502:33234-33253 Msa1429420:CDS 30.0%
AAAAATCAAGAAAGGGTCAA+AGG + tig0026502:33279-33298 Msa1429420:CDS 30.0%
AAAATCAAGAAAGGGTCAAA+GGG + tig0026502:33280-33299 Msa1429420:CDS 30.0%
! AAAGCTTTGTGTAACATCAT+TGG + tig0026502:33363-33382 Msa1429420:CDS 30.0%
AAAGCTTGGAAAAAATGTTG+AGG + tig0026502:33411-33430 Msa1429420:CDS 30.0%
! CTTGAAATGCCAAATGTTTT+GGG - tig0026502:33675-33694 None:intergenic 30.0%
! ACTTGAAATGCCAAATGTTT+TGG - tig0026502:33676-33695 None:intergenic 30.0%
! TAAACTGTGAAACTGATTCT+AGG + tig0026502:33832-33851 Msa1429420:three_prime_UTR 30.0%
GAGATGGAATGAAAAAACAA+AGG - tig0026502:32018-32037 None:intergenic 30.0%
!!! TCCCATCATTACTTTTTTCA+TGG + tig0026502:32135-32154 Msa1429420:CDS 30.0%
CACCATGAAAAAAGTAATGA+TGG - tig0026502:32140-32159 None:intergenic 30.0%
TTGAATTATTCGTCATAGAG+AGG - tig0026502:32763-32782 None:intergenic 30.0%
!!! ATTTTTTGTGTTAACTCTCC+GGG - tig0026502:32832-32851 None:intergenic 30.0%
! TTACTCTATTTATCTGAAGC+TGG + tig0026502:32923-32942 Msa1429420:intron 30.0%
! ATTTATCTGAAGCTGGATAT+TGG + tig0026502:32930-32949 Msa1429420:intron 30.0%
! AATACCCTTTTCATCAAACA+AGG + tig0026502:33234-33253 Msa1429420:CDS 30.0%
AAAAATCAAGAAAGGGTCAA+AGG + tig0026502:33279-33298 Msa1429420:CDS 30.0%
AAAATCAAGAAAGGGTCAAA+GGG + tig0026502:33280-33299 Msa1429420:CDS 30.0%
! AAAGCTTTGTGTAACATCAT+TGG + tig0026502:33363-33382 Msa1429420:CDS 30.0%
AAAGCTTGGAAAAAATGTTG+AGG + tig0026502:33411-33430 Msa1429420:CDS 30.0%
! CTTGAAATGCCAAATGTTTT+GGG - tig0026502:33675-33694 None:intergenic 30.0%
! ACTTGAAATGCCAAATGTTT+TGG - tig0026502:33676-33695 None:intergenic 30.0%
! TAAACTGTGAAACTGATTCT+AGG + tig0026502:33832-33851 Msa1429420:three_prime_UTR 30.0%
!! CTCTTTTGGAAGAAATGATC+AGG - tig0026502:32048-32067 None:intergenic 35.0%
TCAGCTTCACTTATCCAATA+TGG + tig0026502:32099-32118 Msa1429420:exon 35.0%
CTATTCTCAAATGTAGCTTG+TGG + tig0026502:32242-32261 Msa1429420:intron 35.0%
CTAGACTATGATACTAACCA+GGG - tig0026502:32365-32384 None:intergenic 35.0%
TCTAGACTATGATACTAACC+AGG - tig0026502:32366-32385 None:intergenic 35.0%
TCAGATGATCTCTATCAGAA+AGG + tig0026502:32668-32687 Msa1429420:intron 35.0%
ACCAAGTAATTGGGTTTAAG+TGG + tig0026502:32729-32748 Msa1429420:intron 35.0%
ACCACTTAAACCCAATTACT+TGG - tig0026502:32733-32752 None:intergenic 35.0%
!!! TTTTTTGTGTTAACTCTCCG+GGG - tig0026502:32831-32850 None:intergenic 35.0%
!! AGAAAGAAGAGTGCTACATT+TGG - tig0026502:33118-33137 None:intergenic 35.0%
AAATGTAGCACTCTTCTTTC+TGG + tig0026502:33117-33136 Msa1429420:CDS 35.0%
!! AGGGTATTGAATTAGCAACT+TGG - tig0026502:33222-33241 None:intergenic 35.0%
! TCCACCTTGTTTGATGAAAA+GGG - tig0026502:33241-33260 None:intergenic 35.0%
! TTCCACCTTGTTTGATGAAA+AGG - tig0026502:33242-33261 None:intergenic 35.0%
TGTAACATCATTGGAGTCTA+TGG + tig0026502:33372-33391 Msa1429420:CDS 35.0%
GATTTCACTACTTCAAAGCT+TGG + tig0026502:33397-33416 Msa1429420:CDS 35.0%
CAGCAATATACAATAGCATC+TGG + tig0026502:33469-33488 Msa1429420:CDS 35.0%
GACAGTAAAACACTGCATAA+GGG - tig0026502:33549-33568 None:intergenic 35.0%
TGACAGTAAAACACTGCATA+AGG - tig0026502:33550-33569 None:intergenic 35.0%
AGAATGGAACCCAAAACATT+TGG + tig0026502:33663-33682 Msa1429420:CDS 35.0%
AAGTACTCAAAGTTCAACCT+GGG + tig0026502:33692-33711 Msa1429420:CDS 35.0%
TATTCTTGGATGACACCAAT+AGG - tig0026502:33787-33806 None:intergenic 35.0%
!! CTCTTTTGGAAGAAATGATC+AGG - tig0026502:32048-32067 None:intergenic 35.0%
TCAGCTTCACTTATCCAATA+TGG + tig0026502:32099-32118 Msa1429420:exon 35.0%
CTATTCTCAAATGTAGCTTG+TGG + tig0026502:32242-32261 Msa1429420:intron 35.0%
CTAGACTATGATACTAACCA+GGG - tig0026502:32365-32384 None:intergenic 35.0%
TCTAGACTATGATACTAACC+AGG - tig0026502:32366-32385 None:intergenic 35.0%
TCAGATGATCTCTATCAGAA+AGG + tig0026502:32668-32687 Msa1429420:intron 35.0%
ACCAAGTAATTGGGTTTAAG+TGG + tig0026502:32729-32748 Msa1429420:intron 35.0%
ACCACTTAAACCCAATTACT+TGG - tig0026502:32733-32752 None:intergenic 35.0%
!!! TTTTTTGTGTTAACTCTCCG+GGG - tig0026502:32831-32850 None:intergenic 35.0%
!! AGAAAGAAGAGTGCTACATT+TGG - tig0026502:33118-33137 None:intergenic 35.0%
AAATGTAGCACTCTTCTTTC+TGG + tig0026502:33117-33136 Msa1429420:CDS 35.0%
!! AGGGTATTGAATTAGCAACT+TGG - tig0026502:33222-33241 None:intergenic 35.0%
! TCCACCTTGTTTGATGAAAA+GGG - tig0026502:33241-33260 None:intergenic 35.0%
! TTCCACCTTGTTTGATGAAA+AGG - tig0026502:33242-33261 None:intergenic 35.0%
TGTAACATCATTGGAGTCTA+TGG + tig0026502:33372-33391 Msa1429420:CDS 35.0%
GATTTCACTACTTCAAAGCT+TGG + tig0026502:33397-33416 Msa1429420:CDS 35.0%
CAGCAATATACAATAGCATC+TGG + tig0026502:33469-33488 Msa1429420:CDS 35.0%
GACAGTAAAACACTGCATAA+GGG - tig0026502:33549-33568 None:intergenic 35.0%
TGACAGTAAAACACTGCATA+AGG - tig0026502:33550-33569 None:intergenic 35.0%
AGAATGGAACCCAAAACATT+TGG + tig0026502:33663-33682 Msa1429420:CDS 35.0%
AAGTACTCAAAGTTCAACCT+GGG + tig0026502:33692-33711 Msa1429420:CDS 35.0%
TATTCTTGGATGACACCAAT+AGG - tig0026502:33787-33806 None:intergenic 35.0%
ATGATCAGGAGAAGTTGAGA+TGG - tig0026502:32034-32053 None:intergenic 40.0%
! TCAAATGTAGCTTGTGGTAG+TGG + tig0026502:32248-32267 Msa1429420:intron 40.0%
TCTTACCTCCTCAACTTTAC+TGG + tig0026502:32286-32305 Msa1429420:CDS 40.0%
ATGGACTTCCAGTAAAGTTG+AGG - tig0026502:32297-32316 None:intergenic 40.0%
! AGCAGATTAGTGATGGCTTT+TGG - tig0026502:32339-32358 None:intergenic 40.0%
GGATATTGGAGTGAAGAGAA+AGG + tig0026502:32944-32963 Msa1429420:CDS 40.0%
GAGTGAAGAGAAAGGAACTT+GGG + tig0026502:32952-32971 Msa1429420:CDS 40.0%
TGTAGATGTTGGAGTCAGAA+AGG + tig0026502:32994-33013 Msa1429420:CDS 40.0%
GTAGATGTTGGAGTCAGAAA+GGG + tig0026502:32995-33014 Msa1429420:CDS 40.0%
GTCAGAAAGGGATACTATGA+AGG + tig0026502:33007-33026 Msa1429420:CDS 40.0%
AGAAAGGGATACTATGAAGG+AGG + tig0026502:33010-33029 Msa1429420:CDS 40.0%
TCTGATGTGAATGTTGGAGT+TGG + tig0026502:33037-33056 Msa1429420:CDS 40.0%
! AGCACTCTTCTTTCTGGAAA+AGG + tig0026502:33123-33142 Msa1429420:CDS 40.0%
ATTGAATTAGCAACTTGGCG+CGG - tig0026502:33217-33236 None:intergenic 40.0%
! ACCCTTTTCATCAAACAAGG+TGG + tig0026502:33237-33256 Msa1429420:CDS 40.0%
TAAAGCTTACTCTGTGCCTT+TGG + tig0026502:33585-33604 Msa1429420:CDS 40.0%
GTCACACTGATACATCAGAA+TGG + tig0026502:33647-33666 Msa1429420:CDS 40.0%
CAAGTACTCAAAGTTCAACC+TGG + tig0026502:33691-33710 Msa1429420:CDS 40.0%
ATCCAAACAACATGATCCTC+AGG - tig0026502:33742-33761 None:intergenic 40.0%
ATGATCAGGAGAAGTTGAGA+TGG - tig0026502:32034-32053 None:intergenic 40.0%
! TCAAATGTAGCTTGTGGTAG+TGG + tig0026502:32248-32267 Msa1429420:intron 40.0%
TCTTACCTCCTCAACTTTAC+TGG + tig0026502:32286-32305 Msa1429420:CDS 40.0%
ATGGACTTCCAGTAAAGTTG+AGG - tig0026502:32297-32316 None:intergenic 40.0%
! AGCAGATTAGTGATGGCTTT+TGG - tig0026502:32339-32358 None:intergenic 40.0%
GGATATTGGAGTGAAGAGAA+AGG + tig0026502:32944-32963 Msa1429420:CDS 40.0%
GAGTGAAGAGAAAGGAACTT+GGG + tig0026502:32952-32971 Msa1429420:CDS 40.0%
TGTAGATGTTGGAGTCAGAA+AGG + tig0026502:32994-33013 Msa1429420:CDS 40.0%
GTAGATGTTGGAGTCAGAAA+GGG + tig0026502:32995-33014 Msa1429420:CDS 40.0%
GTCAGAAAGGGATACTATGA+AGG + tig0026502:33007-33026 Msa1429420:CDS 40.0%
AGAAAGGGATACTATGAAGG+AGG + tig0026502:33010-33029 Msa1429420:CDS 40.0%
TCTGATGTGAATGTTGGAGT+TGG + tig0026502:33037-33056 Msa1429420:CDS 40.0%
! AGCACTCTTCTTTCTGGAAA+AGG + tig0026502:33123-33142 Msa1429420:CDS 40.0%
ATTGAATTAGCAACTTGGCG+CGG - tig0026502:33217-33236 None:intergenic 40.0%
! ACCCTTTTCATCAAACAAGG+TGG + tig0026502:33237-33256 Msa1429420:CDS 40.0%
TAAAGCTTACTCTGTGCCTT+TGG + tig0026502:33585-33604 Msa1429420:CDS 40.0%
GTCACACTGATACATCAGAA+TGG + tig0026502:33647-33666 Msa1429420:CDS 40.0%
CAAGTACTCAAAGTTCAACC+TGG + tig0026502:33691-33710 Msa1429420:CDS 40.0%
ATCCAAACAACATGATCCTC+AGG - tig0026502:33742-33761 None:intergenic 40.0%
GACTTCCAGTAAAGTTGAGG+AGG - tig0026502:32294-32313 None:intergenic 45.0%
!! GCTTTTGGCATTGAAGAGGT+GGG - tig0026502:32324-32343 None:intergenic 45.0%
!! GATGGCTTTTGGCATTGAAG+AGG - tig0026502:32328-32347 None:intergenic 45.0%
AGGGTGTAGCAGATTAGTGA+TGG - tig0026502:32346-32365 None:intergenic 45.0%
ATCACTAATCTGCTACACCC+TGG + tig0026502:32345-32364 Msa1429420:CDS 45.0%
GGAGTGAAGAGAAAGGAACT+TGG + tig0026502:32951-32970 Msa1429420:CDS 45.0%
TGAAGAGAAAGGAACTTGGG+TGG + tig0026502:32955-32974 Msa1429420:CDS 45.0%
AAAGGAACTTGGGTGGATGT+AGG + tig0026502:32962-32981 Msa1429420:CDS 45.0%
AAGGGATACTATGAAGGAGG+TGG + tig0026502:33013-33032 Msa1429420:CDS 45.0%
CTGGAAAAGGACTTGCATCA+TGG + tig0026502:33136-33155 Msa1429420:CDS 45.0%
TTGCTCTTCACACTCACTGA+CGG - tig0026502:33326-33345 None:intergenic 45.0%
TCAGTGAGTGTGAAGAGCAA+GGG + tig0026502:33326-33345 Msa1429420:CDS 45.0%
TGTGAAGAGCAAGGGATCAA+AGG + tig0026502:33334-33353 Msa1429420:CDS 45.0%
! AGCATCTGGAGTGAAGAAGT+TGG + tig0026502:33483-33502 Msa1429420:CDS 45.0%
! GCATCTGGAGTGAAGAAGTT+GGG + tig0026502:33484-33503 Msa1429420:CDS 45.0%
AAACAACATGATCCTCAGGC+AGG - tig0026502:33738-33757 None:intergenic 45.0%
TGCCTGAGGATCATGTTGTT+TGG + tig0026502:33737-33756 Msa1429420:CDS 45.0%
GACTTCCAGTAAAGTTGAGG+AGG - tig0026502:32294-32313 None:intergenic 45.0%
!! GCTTTTGGCATTGAAGAGGT+GGG - tig0026502:32324-32343 None:intergenic 45.0%
!! GATGGCTTTTGGCATTGAAG+AGG - tig0026502:32328-32347 None:intergenic 45.0%
AGGGTGTAGCAGATTAGTGA+TGG - tig0026502:32346-32365 None:intergenic 45.0%
ATCACTAATCTGCTACACCC+TGG + tig0026502:32345-32364 Msa1429420:CDS 45.0%
GGAGTGAAGAGAAAGGAACT+TGG + tig0026502:32951-32970 Msa1429420:CDS 45.0%
TGAAGAGAAAGGAACTTGGG+TGG + tig0026502:32955-32974 Msa1429420:CDS 45.0%
AAAGGAACTTGGGTGGATGT+AGG + tig0026502:32962-32981 Msa1429420:CDS 45.0%
AAGGGATACTATGAAGGAGG+TGG + tig0026502:33013-33032 Msa1429420:CDS 45.0%
CTGGAAAAGGACTTGCATCA+TGG + tig0026502:33136-33155 Msa1429420:CDS 45.0%
TTGCTCTTCACACTCACTGA+CGG - tig0026502:33326-33345 None:intergenic 45.0%
TCAGTGAGTGTGAAGAGCAA+GGG + tig0026502:33326-33345 Msa1429420:CDS 45.0%
TGTGAAGAGCAAGGGATCAA+AGG + tig0026502:33334-33353 Msa1429420:CDS 45.0%
! AGCATCTGGAGTGAAGAAGT+TGG + tig0026502:33483-33502 Msa1429420:CDS 45.0%
! GCATCTGGAGTGAAGAAGTT+GGG + tig0026502:33484-33503 Msa1429420:CDS 45.0%
AAACAACATGATCCTCAGGC+AGG - tig0026502:33738-33757 None:intergenic 45.0%
TGCCTGAGGATCATGTTGTT+TGG + tig0026502:33737-33756 Msa1429420:CDS 45.0%
CATTGAAGAGGTGGGAAGCA+TGG - tig0026502:32316-32335 None:intergenic 50.0%
!! GGCTTTTGGCATTGAAGAGG+TGG - tig0026502:32325-32344 None:intergenic 50.0%
GGAAGGGGGTCATAGTAATC+AGG - tig0026502:32801-32820 None:intergenic 50.0%
TTAACTCTCCGGGGTCTAAG+GGG - tig0026502:32822-32841 None:intergenic 50.0%
GTTAACTCTCCGGGGTCTAA+GGG - tig0026502:32823-32842 None:intergenic 50.0%
TGTTAACTCTCCGGGGTCTA+AGG - tig0026502:32824-32843 None:intergenic 50.0%
AACTTGGGTGGATGTAGGCA+AGG + tig0026502:32967-32986 Msa1429420:CDS 50.0%
ACTTGGGTGGATGTAGGCAA+GGG + tig0026502:32968-32987 Msa1429420:CDS 50.0%
!! GGTGGCTCTGATGTGAATGT+TGG + tig0026502:33031-33050 Msa1429420:CDS 50.0%
GTCAGTGAGTGTGAAGAGCA+AGG + tig0026502:33325-33344 Msa1429420:CDS 50.0%
AGAGCAAGGGATCAAAGGAG+AGG + tig0026502:33339-33358 Msa1429420:CDS 50.0%
AGCTTACTCTGTGCCTTTGG+AGG + tig0026502:33588-33607 Msa1429420:CDS 50.0%
GCTTACTCTGTGCCTTTGGA+GGG + tig0026502:33589-33608 Msa1429420:CDS 50.0%
TGACAAACTGGAACAGTCCC+AGG - tig0026502:33712-33731 None:intergenic 50.0%
CATTGAAGAGGTGGGAAGCA+TGG - tig0026502:32316-32335 None:intergenic 50.0%
!! GGCTTTTGGCATTGAAGAGG+TGG - tig0026502:32325-32344 None:intergenic 50.0%
GGAAGGGGGTCATAGTAATC+AGG - tig0026502:32801-32820 None:intergenic 50.0%
TTAACTCTCCGGGGTCTAAG+GGG - tig0026502:32822-32841 None:intergenic 50.0%
GTTAACTCTCCGGGGTCTAA+GGG - tig0026502:32823-32842 None:intergenic 50.0%
TGTTAACTCTCCGGGGTCTA+AGG - tig0026502:32824-32843 None:intergenic 50.0%
AACTTGGGTGGATGTAGGCA+AGG + tig0026502:32967-32986 Msa1429420:CDS 50.0%
ACTTGGGTGGATGTAGGCAA+GGG + tig0026502:32968-32987 Msa1429420:CDS 50.0%
!! GGTGGCTCTGATGTGAATGT+TGG + tig0026502:33031-33050 Msa1429420:CDS 50.0%
GTCAGTGAGTGTGAAGAGCA+AGG + tig0026502:33325-33344 Msa1429420:CDS 50.0%
AGAGCAAGGGATCAAAGGAG+AGG + tig0026502:33339-33358 Msa1429420:CDS 50.0%
AGCTTACTCTGTGCCTTTGG+AGG + tig0026502:33588-33607 Msa1429420:CDS 50.0%
GCTTACTCTGTGCCTTTGGA+GGG + tig0026502:33589-33608 Msa1429420:CDS 50.0%
TGACAAACTGGAACAGTCCC+AGG - tig0026502:33712-33731 None:intergenic 50.0%
GGCAAGGGTGGTGTAGATGT+TGG + tig0026502:32983-33002 Msa1429420:CDS 55.0%
AACTTGGCGCGGCAAGAATG+TGG - tig0026502:33206-33225 None:intergenic 55.0%
CTTCCATCAGCACCCTCCAA+AGG - tig0026502:33604-33623 None:intergenic 55.0%
TCAGGCAGGAGGTGACAAAC+TGG - tig0026502:33724-33743 None:intergenic 55.0%
AGTTTGTCACCTCCTGCCTG+AGG + tig0026502:33723-33742 Msa1429420:CDS 55.0%
CAACATGATCCTCAGGCAGG+AGG - tig0026502:33735-33754 None:intergenic 55.0%
GGCAAGGGTGGTGTAGATGT+TGG + tig0026502:32983-33002 Msa1429420:CDS 55.0%
AACTTGGCGCGGCAAGAATG+TGG - tig0026502:33206-33225 None:intergenic 55.0%
CTTCCATCAGCACCCTCCAA+AGG - tig0026502:33604-33623 None:intergenic 55.0%
TCAGGCAGGAGGTGACAAAC+TGG - tig0026502:33724-33743 None:intergenic 55.0%
AGTTTGTCACCTCCTGCCTG+AGG + tig0026502:33723-33742 Msa1429420:CDS 55.0%
CAACATGATCCTCAGGCAGG+AGG - tig0026502:33735-33754 None:intergenic 55.0%
TCTCCGGGGTCTAAGGGGAA+GGG - tig0026502:32817-32836 None:intergenic 60.0%
TGGGTGGATGTAGGCAAGGG+TGG + tig0026502:32971-32990 Msa1429420:CDS 60.0%
!! GTGCCTTTGGAGGGTGCTGA+TGG + tig0026502:33598-33617 Msa1429420:CDS 60.0%
TCTCCGGGGTCTAAGGGGAA+GGG - tig0026502:32817-32836 None:intergenic 60.0%
TGGGTGGATGTAGGCAAGGG+TGG + tig0026502:32971-32990 Msa1429420:CDS 60.0%
!! GTGCCTTTGGAGGGTGCTGA+TGG + tig0026502:33598-33617 Msa1429420:CDS 60.0%
ACCCCCTTCCCCTTAGACCC+CGG + tig0026502:32811-32830 Msa1429420:intron 65.0%
TCCGGGGTCTAAGGGGAAGG+GGG - tig0026502:32815-32834 None:intergenic 65.0%
CTCCGGGGTCTAAGGGGAAG+GGG - tig0026502:32816-32835 None:intergenic 65.0%
CTCTCCGGGGTCTAAGGGGA+AGG - tig0026502:32818-32837 None:intergenic 65.0%
ACCCCCTTCCCCTTAGACCC+CGG + tig0026502:32811-32830 Msa1429420:intron 65.0%
TCCGGGGTCTAAGGGGAAGG+GGG - tig0026502:32815-32834 None:intergenic 65.0%
CTCCGGGGTCTAAGGGGAAG+GGG - tig0026502:32816-32835 None:intergenic 65.0%
CTCTCCGGGGTCTAAGGGGA+AGG - tig0026502:32818-32837 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0026502 gene 32014 34029 32014 ID=Msa1429420;Name=Msa1429420
tig0026502 mRNA 32014 34029 32014 ID=Msa1429420-mRNA-1;Parent=Msa1429420;Name=Msa1429420-mRNA-1;_AED=0.02;_eAED=0.02;_QI=104|1|1|1|1|1|3|258|325
tig0026502 exon 32014 32156 32014 ID=Msa1429420-mRNA-1:exon:6512;Parent=Msa1429420-mRNA-1
tig0026502 exon 32258 32366 32258 ID=Msa1429420-mRNA-1:exon:6513;Parent=Msa1429420-mRNA-1
tig0026502 exon 32942 34029 32942 ID=Msa1429420-mRNA-1:exon:6514;Parent=Msa1429420-mRNA-1
tig0026502 five_prime_UTR 32014 32117 32014 ID=Msa1429420-mRNA-1:five_prime_utr;Parent=Msa1429420-mRNA-1
tig0026502 CDS 32118 32156 32118 ID=Msa1429420-mRNA-1:cds;Parent=Msa1429420-mRNA-1
tig0026502 CDS 32258 32366 32258 ID=Msa1429420-mRNA-1:cds;Parent=Msa1429420-mRNA-1
tig0026502 CDS 32942 33771 32942 ID=Msa1429420-mRNA-1:cds;Parent=Msa1429420-mRNA-1
tig0026502 three_prime_UTR 33772 34029 33772 ID=Msa1429420-mRNA-1:three_prime_utr;Parent=Msa1429420-mRNA-1
Gene Sequence

>Msa1429420

ATGGATTTTCATCTTGTTCCCATCATTACTTTTTTCATGCTTGTGGTAGTGGCAACTAATGCTGCAATCTTACCTCCTCAACTTTACTGGAAGTCCATGCTTCCCACCTCTTCAATGCCAAAAGCCATCACTAATCTGCTACACCCTGCTGGATATTGGAGTGAAGAGAAAGGAACTTGGGTGGATGTAGGCAAGGGTGGTGTAGATGTTGGAGTCAGAAAGGGATACTATGAAGGAGGTGGCTCTGATGTGAATGTTGGAGTTGGACGTTCTCCATTTATTTATAATTATGCTGCAAGTGAGACTCAGTTACATGATAAACCAAATGTAGCACTCTTCTTTCTGGAAAAGGACTTGCATCATGGAACAAAACTGAACTTGCAATTCACTAAGATCACTTCAAATGCAGCCACATTCTTGCCGCGCCAAGTTGCTAATTCAATACCCTTTTCATCAAACAAGGTGGAATACATAATCAACAAGTTAAAAATCAAGAAAGGGTCAAAGGGTGCTCAGATTGTGAAGAACACCGTCAGTGAGTGTGAAGAGCAAGGGATCAAAGGAGAGGAAAAGCTTTGTGTAACATCATTGGAGTCTATGGTTGATTTCACTACTTCAAAGCTTGGAAAAAATGTTGAGGCTGTTTCAACAGAAGTGAACAAAGAAAGTAATTTACAGCAATATACAATAGCATCTGGAGTGAAGAAGTTGGGTGAGAAGAACAAAGCTGTTGTGTGTCACAAAGAGAATTACCCTTATGCAGTGTTTTACTGTCACAAAACAGATACAACTAAAGCTTACTCTGTGCCTTTGGAGGGTGCTGATGGAAGCAGAGTTAAAGCTATTGCTGTGTGTCACACTGATACATCAGAATGGAACCCAAAACATTTGGCATTTCAAGTACTCAAAGTTCAACCTGGGACTGTTCCAGTTTGTCACCTCCTGCCTGAGGATCATGTTGTTTGGATTCGCAAGTAG

Protein sequence

>Msa1429420

MDFHLVPIITFFMLVVVATNAAILPPQLYWKSMLPTSSMPKAITNLLHPAGYWSEEKGTWVDVGKGGVDVGVRKGYYEGGGSDVNVGVGRSPFIYNYAASETQLHDKPNVALFFLEKDLHHGTKLNLQFTKITSNAATFLPRQVANSIPFSSNKVEYIINKLKIKKGSKGAQIVKNTVSECEEQGIKGEEKLCVTSLESMVDFTTSKLGKNVEAVSTEVNKESNLQQYTIASGVKKLGEKNKAVVCHKENYPYAVFYCHKTDTTKAYSVPLEGADGSRVKAIAVCHTDTSEWNPKHLAFQVLKVQPGTVPVCHLLPEDHVVWIRK*