Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0719080 | Msa0914840 | 0.830767 | 2.439976e-55 | -8.615850e-47 |
| Msa0719090 | Msa0914840 | 0.832309 | 1.017640e-55 | -8.615850e-47 |
| Msa0719390 | Msa0914840 | 0.837553 | 4.856544e-57 | -8.615850e-47 |
| Msa0789640 | Msa0914840 | 0.839441 | 1.581410e-57 | -8.615850e-47 |
| Msa0914840 | Msa1305900 | 0.840134 | 1.044259e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 77 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGTAGTCAATTGAGAATA+TGG | 0.268632 | 6_2:+29953954 | None:intergenic |
| AATCATGTACGTTCTCCTTT+TGG | 0.297155 | 6_2:-29952653 | Msa0914840:intron |
| CACTGTTTCGTCTTCTCTCA+TGG | 0.313732 | 6_2:+29951982 | None:intergenic |
| GATTATGTTGCTGCTGTTGC+TGG | 0.316631 | 6_2:+29954048 | None:intergenic |
| GCGGAGCTCCGCAGTGGTTC+TGG | 0.322903 | 6_2:+29954243 | None:intergenic |
| TTCGGAAGCACCCCAGGTTT+CGG | 0.340092 | 6_2:-29954159 | Msa0914840:five_prime_UTR |
| CTCAAATCCATTTCGCATAG+AGG | 0.403299 | 6_2:-29952677 | Msa0914840:CDS |
| AGCAAACAATCAAACAGCTT+GGG | 0.409445 | 6_2:+29953196 | None:intergenic |
| AACAGTGCAAGACCGTTGTT+TGG | 0.410939 | 6_2:-29951966 | Msa0914840:CDS |
| ACTTCAGCTCGCCGGTGACA+TGG | 0.417521 | 6_2:+29952012 | None:intergenic |
| TCTCCTTCATCTTCCCTCTT+CGG | 0.417778 | 6_2:-29954177 | Msa0914840:five_prime_UTR |
| TCCGCAGTGGTTCTGGCGGC+GGG | 0.418961 | 6_2:+29954250 | None:intergenic |
| ATGATTCCCTCTATGCGAAA+TGG | 0.420346 | 6_2:+29952721 | None:intergenic |
| CTTTGTGAACATAACTTGGC+TGG | 0.423008 | 6_2:+29950684 | None:intergenic |
| CTCCGCAGTGGTTCTGGCGG+CGG | 0.424741 | 6_2:+29954249 | None:intergenic |
| ATGATTCCCTCTATGCGAAA+TGG | 0.429814 | 6_2:+29952670 | None:intergenic |
| TTCAAATCCATTTCGCATAG+AGG | 0.436722 | 6_2:-29952728 | Msa0914840:CDS |
| GTTCTGGCGGCGGGAGTGGA+CGG | 0.437448 | 6_2:+29954259 | None:intergenic |
| CAGTCTTTGTGAACATAACT+TGG | 0.438099 | 6_2:+29950680 | None:intergenic |
| GCTGGTGCTGGCACGGGTGA+TGG | 0.439075 | 6_2:+29954210 | None:intergenic |
| ACCCGTGCCAGCACCAGCTT+TGG | 0.442125 | 6_2:-29954205 | Msa0914840:five_prime_UTR |
| AGTGGTTCTGGCGGCGGGAG+TGG | 0.443065 | 6_2:+29954255 | None:intergenic |
| TCCTCTAGTGAGAATGGAAC+TGG | 0.451352 | 6_2:+29953915 | None:intergenic |
| AGTAGTTCTGGCGGCGGGAG+TGG | 0.455814 | 6_2:+29954291 | None:intergenic |
| TCCCTCTTCGGAAGCACCCC+AGG | 0.455865 | 6_2:-29954165 | Msa0914840:five_prime_UTR |
| TTCTCAATTGACTACTCAAA+TGG | 0.458974 | 6_2:-29953949 | Msa0914840:exon |
| GCGGGAGTGGACGGTGGCAA+TGG | 0.461640 | 6_2:+29954304 | None:intergenic |
| TGAAACACAAAACCAGTAGA+AGG | 0.464949 | 6_2:+29954008 | None:intergenic |
| GTTCTGGCGGCGGGAGTGGA+CGG | 0.467422 | 6_2:+29954295 | None:intergenic |
| ATGTCACCGGCGAGCTGAAG+TGG | 0.476662 | 6_2:-29952010 | Msa0914840:CDS |
| TGGGAGAGAACTTTGTGATC+TGG | 0.487015 | 6_2:+29952032 | None:intergenic |
| TTTCAGCTATCACCTTCTAC+TGG | 0.491119 | 6_2:-29954020 | Msa0914840:five_prime_UTR |
| CAAGTTATGTTCACAAAGAC+TGG | 0.493059 | 6_2:-29950679 | Msa0914840:CDS |
| GTCAATTGAGAATATGGAAA+CGG | 0.494051 | 6_2:+29953960 | None:intergenic |
| TCACGATCCTCTAGTGAGAA+TGG | 0.497135 | 6_2:+29953909 | None:intergenic |
| GAAATTGCCAAAGCTGGTGC+TGG | 0.501487 | 6_2:+29954198 | None:intergenic |
| CACGGGTGATGGTGGTGATA+CGG | 0.503674 | 6_2:+29954221 | None:intergenic |
| GTTGAAGAAGCACTTAAAGC+AGG | 0.514957 | 6_2:+29954131 | None:intergenic |
| GCCAAAGCTGGTGCTGGCAC+GGG | 0.515507 | 6_2:+29954204 | None:intergenic |
| TGCCAAAGCTGGTGCTGGCA+CGG | 0.521269 | 6_2:+29954203 | None:intergenic |
| ATTATTCCGTCTCTGGGCAA+TGG | 0.526524 | 6_2:+29952073 | None:intergenic |
| CTTCAGCTCGCCGGTGACAT+GGG | 0.527166 | 6_2:+29952013 | None:intergenic |
| TCAAATCCATTTCGCATAGA+GGG | 0.528595 | 6_2:-29952727 | Msa0914840:CDS |
| AACGCAGTAGTTCTGGCGGC+GGG | 0.529047 | 6_2:+29954286 | None:intergenic |
| CAACGCAGTAGTTCTGGCGG+CGG | 0.529267 | 6_2:+29954285 | None:intergenic |
| ACCTGGGGTGCTTCCGAAGA+GGG | 0.536695 | 6_2:+29954164 | None:intergenic |
| TTCGATCCATTGCCCAGAGA+CGG | 0.537608 | 6_2:-29952079 | Msa0914840:CDS |
| GAAGGTGATAGCTGAAAGTG+TGG | 0.544869 | 6_2:+29954026 | None:intergenic |
| TTTGTGAACATAACTTGGCT+GGG | 0.548875 | 6_2:+29950685 | None:intergenic |
| GGTGCTGGCACGGGTGATGG+TGG | 0.549498 | 6_2:+29954213 | None:intergenic |
| TCAAATCCATTTCGCATAGA+GGG | 0.549968 | 6_2:-29952676 | Msa0914840:CDS |
| AAAACAATTATTCCGTCTCT+GGG | 0.552721 | 6_2:+29952067 | None:intergenic |
| CTTCCGAAGAGGGAAGATGA+AGG | 0.554289 | 6_2:+29954174 | None:intergenic |
| AGAGAACGATGTTGAGAAGA+GGG | 0.556854 | 6_2:+29954088 | None:intergenic |
| AAAGTTCTCTCCCATGTCAC+CGG | 0.559302 | 6_2:-29952023 | Msa0914840:CDS |
| GAAGGAGAAATTGCCAAAGC+TGG | 0.563206 | 6_2:+29954192 | None:intergenic |
| TCCAGTTCCATTCTCACTAG+AGG | 0.567667 | 6_2:-29953916 | Msa0914840:CDS |
| TGAGAATATGGAAACGGCGA+AGG | 0.576017 | 6_2:+29953966 | None:intergenic |
| CAGAGAACGATGTTGAGAAG+AGG | 0.576258 | 6_2:+29954087 | None:intergenic |
| TTGAAGAAGCACTTAAAGCA+GGG | 0.580922 | 6_2:+29954132 | None:intergenic |
| GAGCTCCCACTTCAGCTCGC+CGG | 0.590484 | 6_2:+29952004 | None:intergenic |
| CTGGCGGCGGGAGTGGACGG+TGG | 0.591317 | 6_2:+29954262 | None:intergenic |
| CTGGCGGCGGGAGTGGACGG+TGG | 0.591317 | 6_2:+29954298 | None:intergenic |
| TGTCACCGGCGAGCTGAAGT+GGG | 0.591989 | 6_2:-29952009 | Msa0914840:CDS |
| GGAAACGGCGAAGGTTGCGA+CGG | 0.607486 | 6_2:+29953975 | None:intergenic |
| AGAACTTTGTGATCTGGATG+TGG | 0.625038 | 6_2:+29952038 | None:intergenic |
| TATGCGAAATGGATTTGAGT+CGG | 0.638166 | 6_2:+29952681 | None:intergenic |
| GAGCTCCGCAGTGGTTCTGG+CGG | 0.642439 | 6_2:+29954246 | None:intergenic |
| GCAAACAATCAAACAGCTTG+GGG | 0.645422 | 6_2:+29953197 | None:intergenic |
| AACCTGGGGTGCTTCCGAAG+AGG | 0.649018 | 6_2:+29954163 | None:intergenic |
| TGAAGAAGCACTTAAAGCAG+GGG | 0.666833 | 6_2:+29954133 | None:intergenic |
| GATACGGCGGAGCTCCGCAG+TGG | 0.676981 | 6_2:+29954237 | None:intergenic |
| ATACAAACAGCTCCAAACAA+CGG | 0.678885 | 6_2:+29951954 | None:intergenic |
| TGGCAACGCAGTAGTTCTGG+CGG | 0.688834 | 6_2:+29954282 | None:intergenic |
| GGGTGATGGTGGTGATACGG+CGG | 0.702921 | 6_2:+29954224 | None:intergenic |
| TCCCGCCGCCAGAACCACTG+CGG | 0.709493 | 6_2:-29954251 | Msa0914840:five_prime_UTR |
| GAAGAAGCACTTAAAGCAGG+GGG | 0.722388 | 6_2:+29954134 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAACTTTAATTTAAAATGA+GGG | + | chr6_2:29952753-29952772 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTCTGTGA+AGG | - | chr6_2:29951437-29951456 | Msa0914840:intron | 15.0% |
| !!! | TTATTTCTTCATTATCTTTT+TGG | - | chr6_2:29951592-29951611 | Msa0914840:intron | 15.0% |
| !!! | ATGATTTTAAAAAAACCATT+TGG | - | chr6_2:29951824-29951843 | Msa0914840:intron | 15.0% |
| !!! | CTAAACTTTAATTTAAAATG+AGG | + | chr6_2:29952754-29952773 | None:intergenic | 15.0% |
| !!! | CTCATTTTAAATTAAAGTTT+AGG | - | chr6_2:29952752-29952771 | Msa0914840:intron | 15.0% |
| !!! | CAGAAAAAAATACTTATTTT+TGG | - | chr6_2:29953748-29953767 | Msa0914840:intron | 15.0% |
| !!! | AAATACTTATTTTTGGTAAT+TGG | - | chr6_2:29953755-29953774 | Msa0914840:intron | 15.0% |
| !! | TATTTCATATTTACACATTT+CGG | + | chr6_2:29953945-29953964 | None:intergenic | 15.0% |
| !! | ATTTCTTCATAAAAAAATAC+TGG | - | chr6_2:29954164-29954183 | Msa0914840:five_prime_UTR | 15.0% |
| !! | TAAAATAAATTTGAACAGTG+TGG | + | chr6_2:29951097-29951116 | None:intergenic | 20.0% |
| !!! | ACTCAAATCAATGATTTTTT+TGG | + | chr6_2:29951242-29951261 | None:intergenic | 20.0% |
| !!! | AAAAAAATCATTGATTTGAG+TGG | - | chr6_2:29951241-29951260 | Msa0914840:intron | 20.0% |
| !! | AGCAATTAAAATGTAAAGAT+TGG | - | chr6_2:29951480-29951499 | Msa0914840:intron | 20.0% |
| !! | ATAAGGATGATTCAATATAT+TGG | + | chr6_2:29951874-29951893 | None:intergenic | 20.0% |
| !! | ATATATTGAATCATCCTTAT+TGG | - | chr6_2:29951874-29951893 | Msa0914840:intron | 20.0% |
| !!! | TTCAAGTGATTTCTTTTTTA+TGG | + | chr6_2:29952444-29952463 | None:intergenic | 20.0% |
| !! | TTTAGTATATTTGCTTATGT+TGG | + | chr6_2:29952567-29952586 | None:intergenic | 20.0% |
| !! | AACTTCAATTTGATTATAAG+CGG | - | chr6_2:29953284-29953303 | Msa0914840:intron | 20.0% |
| !!! | AACAATTTTAAAATGCCTTT+AGG | - | chr6_2:29953637-29953656 | Msa0914840:intron | 20.0% |
| !!! | GGTACAATTTTCATAAAATT+TGG | - | chr6_2:29953798-29953817 | Msa0914840:intron | 20.0% |
| !! | GTTTTCATTAAGGTAACTAT+TGG | + | chr6_2:29951178-29951197 | None:intergenic | 25.0% |
| !!! | CATCATCAGTTTTATTTCAA+TGG | - | chr6_2:29951266-29951285 | Msa0914840:intron | 25.0% |
| ! | TTTATTTCAATGGTTGTTGT+AGG | - | chr6_2:29951276-29951295 | Msa0914840:intron | 25.0% |
| !! | GATTTTTCTCTCACAAATAA+AGG | - | chr6_2:29951344-29951363 | Msa0914840:intron | 25.0% |
| !!! | TTTGGTTTGTTTGTCAATTT+AGG | - | chr6_2:29951367-29951386 | Msa0914840:intron | 25.0% |
| ! | AATTTAGGAATTTCTGTACT+AGG | - | chr6_2:29951382-29951401 | Msa0914840:intron | 25.0% |
| ! | TTGTTTGCTTATATGAACTT+TGG | - | chr6_2:29951778-29951797 | Msa0914840:intron | 25.0% |
| ! | TAAGTAGTGAAAATTCCAAA+TGG | + | chr6_2:29951842-29951861 | None:intergenic | 25.0% |
| !! | TTGTCACTTAAAAACCAATA+AGG | + | chr6_2:29951891-29951910 | None:intergenic | 25.0% |
| !!! | TTTTAAGTGACAAGTTTTGA+TGG | - | chr6_2:29951898-29951917 | Msa0914840:intron | 25.0% |
| !!! | ATTTGCAATAGGTTTTTTAC+CGG | - | chr6_2:29951965-29951984 | Msa0914840:CDS | 25.0% |
| ! | AAGAGACTTAATTGATCAAT+GGG | + | chr6_2:29952053-29952072 | None:intergenic | 25.0% |
| ! | TTAAGTCTCTTCCAATTATA+TGG | - | chr6_2:29952062-29952081 | Msa0914840:CDS | 25.0% |
| ! | AAATTGAATCCATAGAGAAT+GGG | + | chr6_2:29952122-29952141 | None:intergenic | 25.0% |
| ! | AAAATTGAATCCATAGAGAA+TGG | + | chr6_2:29952123-29952142 | None:intergenic | 25.0% |
| !! | GAAGCTTTTATCTATTGTTA+TGG | - | chr6_2:29952591-29952610 | Msa0914840:intron | 25.0% |
| ! | CAAAGATATAATCTAATGCA+TGG | + | chr6_2:29952700-29952719 | None:intergenic | 25.0% |
| !! | AAATAGTTTTTGCTTGGAAT+TGG | - | chr6_2:29953310-29953329 | Msa0914840:intron | 25.0% |
| ! | TATACAAAAATGAAAGGCAA+TGG | + | chr6_2:29953462-29953481 | None:intergenic | 25.0% |
| ! | AATCGGTATACAAAAATGAA+AGG | + | chr6_2:29953468-29953487 | None:intergenic | 25.0% |
| !!! | CATTTTTGTATACCGATTAT+TGG | - | chr6_2:29953470-29953489 | Msa0914840:intron | 25.0% |
| ! | ACATTATACTCACCAATAAT+CGG | + | chr6_2:29953485-29953504 | None:intergenic | 25.0% |
| ! | AAATCTACATAAAAGAGAGA+AGG | + | chr6_2:29953593-29953612 | None:intergenic | 25.0% |
| !!! | AATTTTAAAATGCCTTTAGG+AGG | - | chr6_2:29953640-29953659 | Msa0914840:intron | 25.0% |
| ! | TATATCAATGTTGTGATCAT+AGG | - | chr6_2:29953847-29953866 | Msa0914840:intron | 25.0% |
| !! | CAATCTTTTACAATATGCAA+GGG | + | chr6_2:29954254-29954273 | None:intergenic | 25.0% |
| !! | ACAATCTTTTACAATATGCA+AGG | + | chr6_2:29954255-29954274 | None:intergenic | 25.0% |
| GTCAATTGAGAATATGGAAA+CGG | + | chr6_2:29951003-29951022 | None:intergenic | 30.0% | |
| TGAGTAGTCAATTGAGAATA+TGG | + | chr6_2:29951009-29951028 | None:intergenic | 30.0% | |
| TTCTCAATTGACTACTCAAA+TGG | - | chr6_2:29951011-29951030 | Msa0914840:intron | 30.0% | |
| ! | GCGAATCAAAGTTTTCATTA+AGG | + | chr6_2:29951188-29951207 | None:intergenic | 30.0% |
| TTCTCTCACAAATAAAGGTT+TGG | - | chr6_2:29951349-29951368 | Msa0914840:intron | 30.0% | |
| !!! | TTTTTTCTGTGAAGGTTTAG+TGG | - | chr6_2:29951445-29951464 | Msa0914840:intron | 30.0% |
| TGCAACTTTATGAATGTATG+AGG | - | chr6_2:29951514-29951533 | Msa0914840:intron | 30.0% | |
| !!! | GTTTTTGTTTTCGTCCTTTT+TGG | - | chr6_2:29951558-29951577 | Msa0914840:intron | 30.0% |
| ! | TAAAGTACCTTCAACCAAAA+AGG | + | chr6_2:29951575-29951594 | None:intergenic | 30.0% |
| !!! | TTCATTATCTTTTTGGTTGC+TGG | - | chr6_2:29951599-29951618 | Msa0914840:intron | 30.0% |
| TGCTTGAAATACCAAGTTAT+GGG | + | chr6_2:29951804-29951823 | None:intergenic | 30.0% | |
| TTGCTTGAAATACCAAGTTA+TGG | + | chr6_2:29951805-29951824 | None:intergenic | 30.0% | |
| !!! | TCTCCTTGATTTTTTTGCAT+TGG | - | chr6_2:29951933-29951952 | Msa0914840:intron | 30.0% |
| GATCCAATGCAAAAAAATCA+AGG | + | chr6_2:29951939-29951958 | None:intergenic | 30.0% | |
| AAAACCTATTGCAAATGTTC+AGG | + | chr6_2:29951961-29951980 | None:intergenic | 30.0% | |
| ! | ATTCATGCGATAGTTTTTAC+CGG | - | chr6_2:29951989-29952008 | Msa0914840:CDS | 30.0% |
| !! | CTTAATTGATCAATGGGTTA+GGG | + | chr6_2:29952047-29952066 | None:intergenic | 30.0% |
| ! | ACTTAATTGATCAATGGGTT+AGG | + | chr6_2:29952048-29952067 | None:intergenic | 30.0% |
| GAAGAGACTTAATTGATCAA+TGG | + | chr6_2:29952054-29952073 | None:intergenic | 30.0% | |
| !! | TATGAGAGCATCCATATAAT+TGG | + | chr6_2:29952076-29952095 | None:intergenic | 30.0% |
| ! | ATGGATTCAATTTTCCTGAA+TGG | - | chr6_2:29952129-29952148 | Msa0914840:intron | 30.0% |
| AATGACAGCATGAGTATAAT+TGG | + | chr6_2:29952160-29952179 | None:intergenic | 30.0% | |
| ! | CAAATACCATCAGTTCTTTT+TGG | - | chr6_2:29952343-29952362 | Msa0914840:intron | 30.0% |
| ! | ATAAAAGCATGTGAACATTG+TGG | - | chr6_2:29952409-29952428 | Msa0914840:intron | 30.0% |
| TTTCGTTGCATTTATACACA+TGG | - | chr6_2:29952499-29952518 | Msa0914840:intron | 30.0% | |
| TTCGTTGCATTTATACACAT+GGG | - | chr6_2:29952500-29952519 | Msa0914840:intron | 30.0% | |
| GATGAGATCATCAACATAAT+TGG | + | chr6_2:29952809-29952828 | None:intergenic | 30.0% | |
| AAAACAATTATTCCGTCTCT+GGG | + | chr6_2:29952896-29952915 | None:intergenic | 30.0% | |
| AAAAACAATTATTCCGTCTC+TGG | + | chr6_2:29952897-29952916 | None:intergenic | 30.0% | |
| !! | ATAGTCTTTTAACTCCACAT+AGG | - | chr6_2:29953063-29953082 | Msa0914840:intron | 30.0% |
| GTTTGTTCACTGATACTTAT+TGG | - | chr6_2:29953161-29953180 | Msa0914840:intron | 30.0% | |
| TTGGTTCATGAAACAACATA+AGG | - | chr6_2:29953180-29953199 | Msa0914840:intron | 30.0% | |
| TGGTTCATGAAACAACATAA+GGG | - | chr6_2:29953181-29953200 | Msa0914840:intron | 30.0% | |
| ATTGAAAGTAGTTCACTGAT+AGG | - | chr6_2:29953236-29953255 | Msa0914840:intron | 30.0% | |
| ! | CGGTAAAAATAGTTTTTGCT+TGG | - | chr6_2:29953304-29953323 | Msa0914840:intron | 30.0% |
| CATGGTAATATAGTAGTGTT+TGG | + | chr6_2:29953371-29953390 | None:intergenic | 30.0% | |
| !! | TATTTTTAAGCCAAGTTCAC+AGG | + | chr6_2:29953423-29953442 | None:intergenic | 30.0% |
| TGGTGAGTATAATGTCATAT+TGG | - | chr6_2:29953490-29953509 | Msa0914840:intron | 30.0% | |
| GAAATATGTGCATAGTCATA+TGG | - | chr6_2:29953520-29953539 | Msa0914840:intron | 30.0% | |
| ! | AAAATATTTTATCCCTGCCT+TGG | - | chr6_2:29953670-29953689 | Msa0914840:intron | 30.0% |
| !! | TTGAAGAAGCACTTAAAGCA+GGG | + | chr6_2:29950831-29950850 | None:intergenic | 35.0% |
| TGAAACACAAAACCAGTAGA+AGG | + | chr6_2:29950955-29950974 | None:intergenic | 35.0% | |
| !!! | TTTTCGTCCTTTTTGGTTGA+AGG | - | chr6_2:29951565-29951584 | Msa0914840:intron | 35.0% |
| ! | TGGTGTAAGAATTAAGTTGC+TGG | - | chr6_2:29951619-29951638 | Msa0914840:intron | 35.0% |
| AGCAAACAATCAAACAGCTT+GGG | + | chr6_2:29951767-29951786 | None:intergenic | 35.0% | |
| AAGCAAACAATCAAACAGCT+TGG | + | chr6_2:29951768-29951787 | None:intergenic | 35.0% | |
| AAAAACTATCGCATGAATGC+CGG | + | chr6_2:29951987-29952006 | None:intergenic | 35.0% | |
| TATAATTGGAAGAGCCATTC+AGG | + | chr6_2:29952146-29952165 | None:intergenic | 35.0% | |
| TTCAAATCCATTTCGCATAG+AGG | - | chr6_2:29952232-29952251 | Msa0914840:intron | 35.0% | |
| TCAAATCCATTTCGCATAGA+GGG | - | chr6_2:29952233-29952252 | Msa0914840:intron | 35.0% | |
| ! | TATGCGAAATGGATTTGAGT+CGG | + | chr6_2:29952282-29952301 | None:intergenic | 35.0% |
| TCAAATCCATTTCGCATAGA+GGG | - | chr6_2:29952233-29952252 | Msa0914840:intron | 35.0% | |
| ! | AATCATGTACGTTCTCCTTT+TGG | - | chr6_2:29952307-29952326 | Msa0914840:intron | 35.0% |
| TGACAGACAAAAGAACCAAA+AGG | + | chr6_2:29952325-29952344 | None:intergenic | 35.0% | |
| !! | TACCATCAGTTCTTTTTGGT+TGG | - | chr6_2:29952347-29952366 | Msa0914840:intron | 35.0% |
| AACCAACCAAAAAGAACTGA+TGG | + | chr6_2:29952352-29952371 | None:intergenic | 35.0% | |
| ! | TGGTTGGTTGATTCAATTCA+TGG | - | chr6_2:29952363-29952382 | Msa0914840:intron | 35.0% |
| ACATGGGACTATATAAGTAG+TGG | - | chr6_2:29952516-29952535 | Msa0914840:intron | 35.0% | |
| ! | GTAGTTGTATCATCTTTTCG+TGG | + | chr6_2:29952624-29952643 | None:intergenic | 35.0% |
| AAAACAAAATGTAGCAGTCG+AGG | + | chr6_2:29952847-29952866 | None:intergenic | 35.0% | |
| ATACAAACAGCTCCAAACAA+CGG | + | chr6_2:29953009-29953028 | None:intergenic | 35.0% | |
| CTCTGATTTCAATACCTATG+TGG | + | chr6_2:29953080-29953099 | None:intergenic | 35.0% | |
| CTACTATATTACCATGACAG+TGG | - | chr6_2:29953375-29953394 | Msa0914840:intron | 35.0% | |
| AATGAATAAGCATGATGCCA+AGG | + | chr6_2:29953690-29953709 | None:intergenic | 35.0% | |
| !!! | TCATAGTCACGCTACTTTTT+TGG | - | chr6_2:29953716-29953735 | Msa0914840:intron | 35.0% |
| GTCTGTTCATTTGATGAAGA+TGG | - | chr6_2:29953875-29953894 | Msa0914840:intron | 35.0% | |
| TTTGTGAACATAACTTGGCT+GGG | + | chr6_2:29954278-29954297 | None:intergenic | 35.0% | |
| CAGTCTTTGTGAACATAACT+TGG | + | chr6_2:29954283-29954302 | None:intergenic | 35.0% | |
| CAAGTTATGTTCACAAAGAC+TGG | - | chr6_2:29954281-29954300 | Msa0914840:five_prime_UTR | 35.0% | |
| !! | TGAAGAAGCACTTAAAGCAG+GGG | + | chr6_2:29950830-29950849 | None:intergenic | 40.0% |
| !! | GTTGAAGAAGCACTTAAAGC+AGG | + | chr6_2:29950832-29950851 | None:intergenic | 40.0% |
| AGAGAACGATGTTGAGAAGA+GGG | + | chr6_2:29950875-29950894 | None:intergenic | 40.0% | |
| TTTCAGCTATCACCTTCTAC+TGG | - | chr6_2:29950940-29950959 | Msa0914840:intron | 40.0% | |
| AGTGACAATATAGCTTCCCA+TGG | - | chr6_2:29951303-29951322 | Msa0914840:intron | 40.0% | |
| AATCGAAGTGTGAGAACCAT+GGG | + | chr6_2:29951322-29951341 | None:intergenic | 40.0% | |
| AAATCGAAGTGTGAGAACCA+TGG | + | chr6_2:29951323-29951342 | None:intergenic | 40.0% | |
| GCAAACAATCAAACAGCTTG+GGG | + | chr6_2:29951766-29951785 | None:intergenic | 40.0% | |
| ATGAACTTTGGCCCATAACT+TGG | - | chr6_2:29951790-29951809 | Msa0914840:intron | 40.0% | |
| GGATCCTGAACATTTGCAAT+AGG | - | chr6_2:29951954-29951973 | Msa0914840:intron | 40.0% | |
| ! | TTTTACCGGTATCCTGAACT+CGG | - | chr6_2:29952003-29952022 | Msa0914840:CDS | 40.0% |
| !! | AATTGATCAATGGGTTAGGG+TGG | + | chr6_2:29952044-29952063 | None:intergenic | 40.0% |
| GTGACATAACCCATTCTCTA+TGG | - | chr6_2:29952110-29952129 | Msa0914840:intron | 40.0% | |
| ATGATTCCCTCTATGCGAAA+TGG | + | chr6_2:29952242-29952261 | None:intergenic | 40.0% | |
| CTCAAATCCATTTCGCATAG+AGG | - | chr6_2:29952283-29952302 | Msa0914840:intron | 40.0% | |
| ATGATTCCCTCTATGCGAAA+TGG | + | chr6_2:29952242-29952261 | None:intergenic | 40.0% | |
| AGAACTTTGTGATCTGGATG+TGG | + | chr6_2:29952925-29952944 | None:intergenic | 40.0% | |
| ! | AGTGATTAGTCCTGTGAACT+TGG | - | chr6_2:29953410-29953429 | Msa0914840:intron | 40.0% |
| ! | ATTTTTGCTCTGCCTCCTAA+AGG | + | chr6_2:29953655-29953674 | None:intergenic | 40.0% |
| GGTTCAACGTAGATTTGAGT+CGG | - | chr6_2:29953776-29953795 | Msa0914840:intron | 40.0% | |
| GTTCAACGTAGATTTGAGTC+GGG | - | chr6_2:29953777-29953796 | Msa0914840:intron | 40.0% | |
| TTCAATGTATTTGACCCGTG+CGG | - | chr6_2:29954050-29954069 | Msa0914840:five_prime_UTR | 40.0% | |
| CTTTGTGAACATAACTTGGC+TGG | + | chr6_2:29954279-29954298 | None:intergenic | 40.0% | |
| GAAGGAGAAATTGCCAAAGC+TGG | + | chr6_2:29950771-29950790 | None:intergenic | 45.0% | |
| TCTCCTTCATCTTCCCTCTT+CGG | - | chr6_2:29950783-29950802 | Msa0914840:intron | 45.0% | |
| !! | GAAGAAGCACTTAAAGCAGG+GGG | + | chr6_2:29950829-29950848 | None:intergenic | 45.0% |
| CAGAGAACGATGTTGAGAAG+AGG | + | chr6_2:29950876-29950895 | None:intergenic | 45.0% | |
| GATTATGTTGCTGCTGTTGC+TGG | + | chr6_2:29950915-29950934 | None:intergenic | 45.0% | |
| GAAGGTGATAGCTGAAAGTG+TGG | + | chr6_2:29950937-29950956 | None:intergenic | 45.0% | |
| TGAGAATATGGAAACGGCGA+AGG | + | chr6_2:29950997-29951016 | None:intergenic | 45.0% | |
| TCCAGTTCCATTCTCACTAG+AGG | - | chr6_2:29951044-29951063 | Msa0914840:intron | 45.0% | |
| TCCTCTAGTGAGAATGGAAC+TGG | + | chr6_2:29951048-29951067 | None:intergenic | 45.0% | |
| TCACGATCCTCTAGTGAGAA+TGG | + | chr6_2:29951054-29951073 | None:intergenic | 45.0% | |
| ATTATTCCGTCTCTGGGCAA+TGG | + | chr6_2:29952890-29952909 | None:intergenic | 45.0% | |
| TGGGAGAGAACTTTGTGATC+TGG | + | chr6_2:29952931-29952950 | None:intergenic | 45.0% | |
| AAAGTTCTCTCCCATGTCAC+CGG | - | chr6_2:29952937-29952956 | Msa0914840:intron | 45.0% | |
| CACTGTTTCGTCTTCTCTCA+TGG | + | chr6_2:29952981-29953000 | None:intergenic | 45.0% | |
| AACAGTGCAAGACCGTTGTT+TGG | - | chr6_2:29952994-29953013 | Msa0914840:intron | 45.0% | |
| CTCAATGATTGCCACTGTCA+TGG | + | chr6_2:29953389-29953408 | None:intergenic | 45.0% | |
| AAGAGAGAAGGACAGAAGAG+TGG | + | chr6_2:29953581-29953600 | None:intergenic | 45.0% | |
| ATAAGCATGATGCCAAGGCA+GGG | + | chr6_2:29953685-29953704 | None:intergenic | 45.0% | |
| AATAAGCATGATGCCAAGGC+AGG | + | chr6_2:29953686-29953705 | None:intergenic | 45.0% | |
| GAAATTGCCAAAGCTGGTGC+TGG | + | chr6_2:29950765-29950784 | None:intergenic | 50.0% | |
| CTTCCGAAGAGGGAAGATGA+AGG | + | chr6_2:29950789-29950808 | None:intergenic | 50.0% | |
| GGTTAGGGTGGAAAGAAGCT+AGG | + | chr6_2:29952032-29952051 | None:intergenic | 50.0% | |
| TTCGATCCATTGCCCAGAGA+CGG | - | chr6_2:29952881-29952900 | Msa0914840:intron | 50.0% | |
| !! | TGGCAACGCAGTAGTTCTGG+CGG | + | chr6_2:29950681-29950700 | None:intergenic | 55.0% |
| !! | CACGGGTGATGGTGGTGATA+CGG | + | chr6_2:29950742-29950761 | None:intergenic | 55.0% |
| !! | TTCGGAAGCACCCCAGGTTT+CGG | - | chr6_2:29950801-29950820 | Msa0914840:intron | 55.0% |
| GGCAACCGAGTTCAGGATAC+CGG | + | chr6_2:29952011-29952030 | None:intergenic | 55.0% | |
| GAAGCTAGGCAACCGAGTTC+AGG | + | chr6_2:29952018-29952037 | None:intergenic | 55.0% | |
| !! | AACGCAGTAGTTCTGGCGGC+GGG | + | chr6_2:29950677-29950696 | None:intergenic | 60.0% |
| !! | CAACGCAGTAGTTCTGGCGG+CGG | + | chr6_2:29950678-29950697 | None:intergenic | 60.0% |
| CGGTGGCAACGCAGTAGTTC+TGG | + | chr6_2:29950684-29950703 | None:intergenic | 60.0% | |
| !! | GGGTGATGGTGGTGATACGG+CGG | + | chr6_2:29950739-29950758 | None:intergenic | 60.0% |
| !! | TGCCAAAGCTGGTGCTGGCA+CGG | + | chr6_2:29950760-29950779 | None:intergenic | 60.0% |
| ! | ACCTGGGGTGCTTCCGAAGA+GGG | + | chr6_2:29950799-29950818 | None:intergenic | 60.0% |
| ! | AACCTGGGGTGCTTCCGAAG+AGG | + | chr6_2:29950800-29950819 | None:intergenic | 60.0% |
| !! | AGCAGGGGGTACCGAAACCT+GGG | + | chr6_2:29950815-29950834 | None:intergenic | 60.0% |
| !! | AAGCAGGGGGTACCGAAACC+TGG | + | chr6_2:29950816-29950835 | None:intergenic | 60.0% |
| GGAAACGGCGAAGGTTGCGA+CGG | + | chr6_2:29950988-29951007 | None:intergenic | 60.0% | |
| CTTCAGCTCGCCGGTGACAT+GGG | + | chr6_2:29952950-29952969 | None:intergenic | 60.0% | |
| ACTTCAGCTCGCCGGTGACA+TGG | + | chr6_2:29952951-29952970 | None:intergenic | 60.0% | |
| ATGTCACCGGCGAGCTGAAG+TGG | - | chr6_2:29952950-29952969 | Msa0914840:intron | 60.0% | |
| TGTCACCGGCGAGCTGAAGT+GGG | - | chr6_2:29952951-29952970 | Msa0914840:intron | 60.0% | |
| ATTTGACCCGTGCGGCAGCA+CGG | - | chr6_2:29954058-29954077 | Msa0914840:five_prime_UTR | 60.0% | |
| !! | AGTAGTTCTGGCGGCGGGAG+TGG | + | chr6_2:29950672-29950691 | None:intergenic | 65.0% |
| !! | GAGCTCCGCAGTGGTTCTGG+CGG | + | chr6_2:29950717-29950736 | None:intergenic | 65.0% |
| ACCCGTGCCAGCACCAGCTT+TGG | - | chr6_2:29950755-29950774 | Msa0914840:intron | 65.0% | |
| !! | GCCAAAGCTGGTGCTGGCAC+GGG | + | chr6_2:29950759-29950778 | None:intergenic | 65.0% |
| !! | TCCCTCTTCGGAAGCACCCC+AGG | - | chr6_2:29950795-29950814 | Msa0914840:intron | 65.0% |
| !! | GCAGGGGGTACCGAAACCTG+GGG | + | chr6_2:29950814-29950833 | None:intergenic | 65.0% |
| GAGCTCCCACTTCAGCTCGC+CGG | + | chr6_2:29952959-29952978 | None:intergenic | 65.0% | |
| TTTGACCCGTGCGGCAGCAC+GGG | - | chr6_2:29954059-29954078 | Msa0914840:five_prime_UTR | 65.0% | |
| GCGGGAGTGGACGGTGGCAA+TGG | + | chr6_2:29950659-29950678 | None:intergenic | 70.0% | |
| GTTCTGGCGGCGGGAGTGGA+CGG | + | chr6_2:29950668-29950687 | None:intergenic | 70.0% | |
| GTTCTGGCGGCGGGAGTGGA+CGG | + | chr6_2:29950668-29950687 | None:intergenic | 70.0% | |
| !! | AGTGGTTCTGGCGGCGGGAG+TGG | + | chr6_2:29950708-29950727 | None:intergenic | 70.0% |
| TCCCGCCGCCAGAACCACTG+CGG | - | chr6_2:29950709-29950728 | Msa0914840:CDS | 70.0% | |
| !! | TCCGCAGTGGTTCTGGCGGC+GGG | + | chr6_2:29950713-29950732 | None:intergenic | 70.0% |
| !! | CTCCGCAGTGGTTCTGGCGG+CGG | + | chr6_2:29950714-29950733 | None:intergenic | 70.0% |
| GCGGAGCTCCGCAGTGGTTC+TGG | + | chr6_2:29950720-29950739 | None:intergenic | 70.0% | |
| GATACGGCGGAGCTCCGCAG+TGG | + | chr6_2:29950726-29950745 | None:intergenic | 70.0% | |
| !! | GGTGCTGGCACGGGTGATGG+TGG | + | chr6_2:29950750-29950769 | None:intergenic | 70.0% |
| !! | GCTGGTGCTGGCACGGGTGA+TGG | + | chr6_2:29950753-29950772 | None:intergenic | 70.0% |
| GTCTACCCGTGCTGCCGCAC+GGG | + | chr6_2:29954067-29954086 | None:intergenic | 70.0% | |
| CGTCTACCCGTGCTGCCGCA+CGG | + | chr6_2:29954068-29954087 | None:intergenic | 70.0% | |
| ! | CTGGCGGCGGGAGTGGACGG+TGG | + | chr6_2:29950665-29950684 | None:intergenic | 80.0% |
| ! | CTGGCGGCGGGAGTGGACGG+TGG | + | chr6_2:29950665-29950684 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 29950655 | 29954327 | 29950655 | ID=Msa0914840;Name=Msa0914840 |
| chr6_2 | mRNA | 29950655 | 29954327 | 29950655 | ID=Msa0914840-mRNA-1;Parent=Msa0914840;Name=Msa0914840-mRNA-1;_AED=0.30;_eAED=0.39;_QI=375|0|0.2|0.6|1|1|5|0|130 |
| chr6_2 | exon | 29950655 | 29950744 | 29950655 | ID=Msa0914840-mRNA-1:exon:5433;Parent=Msa0914840-mRNA-1 |
| chr6_2 | exon | 29951962 | 29952104 | 29951962 | ID=Msa0914840-mRNA-1:exon:5432;Parent=Msa0914840-mRNA-1 |
| chr6_2 | exon | 29952654 | 29952753 | 29952654 | ID=Msa0914840-mRNA-1:exon:5431;Parent=Msa0914840-mRNA-1 |
| chr6_2 | exon | 29953211 | 29953219 | 29953211 | ID=Msa0914840-mRNA-1:exon:5430;Parent=Msa0914840-mRNA-1 |
| chr6_2 | exon | 29953902 | 29954327 | 29953902 | ID=Msa0914840-mRNA-1:exon:5429;Parent=Msa0914840-mRNA-1 |
| chr6_2 | five_prime_UTR | 29953953 | 29954327 | 29953953 | ID=Msa0914840-mRNA-1:five_prime_utr;Parent=Msa0914840-mRNA-1 |
| chr6_2 | CDS | 29953902 | 29953952 | 29953902 | ID=Msa0914840-mRNA-1:cds;Parent=Msa0914840-mRNA-1 |
| chr6_2 | CDS | 29953211 | 29953219 | 29953211 | ID=Msa0914840-mRNA-1:cds;Parent=Msa0914840-mRNA-1 |
| chr6_2 | CDS | 29952654 | 29952753 | 29952654 | ID=Msa0914840-mRNA-1:cds;Parent=Msa0914840-mRNA-1 |
| chr6_2 | CDS | 29951962 | 29952104 | 29951962 | ID=Msa0914840-mRNA-1:cds;Parent=Msa0914840-mRNA-1 |
| chr6_2 | CDS | 29950655 | 29950744 | 29950655 | ID=Msa0914840-mRNA-1:cds;Parent=Msa0914840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
