Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315940 | XP_013462730.1 | 100.000 | 274 | 0 | 0 | 1 | 274 | 1 | 274 | 0.0 | 540 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315940 | sp|Q55909|Y305_SYNY3 | 40.385 | 208 | 117 | 4 | 34 | 236 | 1 | 206 | 5.98e-43 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090570 | Msa0315940 | 0.811118 | 8.216045e-51 | -8.615850e-47 |
| Msa0106710 | Msa0315940 | 0.800418 | 1.454749e-48 | -8.615850e-47 |
| Msa0118540 | Msa0315940 | 0.803642 | 3.162348e-49 | -8.615850e-47 |
| Msa0139670 | Msa0315940 | 0.812693 | 3.728559e-51 | -8.615850e-47 |
| Msa0183850 | Msa0315940 | 0.810987 | 8.771320e-51 | -8.615850e-47 |
| Msa0204960 | Msa0315940 | 0.808876 | 2.496689e-50 | -8.615850e-47 |
| Msa0207040 | Msa0315940 | -0.837358 | 5.448435e-57 | -8.615850e-47 |
| Msa0207350 | Msa0315940 | 0.808374 | 3.195456e-50 | -8.615850e-47 |
| Msa0220730 | Msa0315940 | 0.835151 | 1.982700e-56 | -8.615850e-47 |
| Msa0240270 | Msa0315940 | 0.809130 | 2.203426e-50 | -8.615850e-47 |
| Msa0271770 | Msa0315940 | 0.845313 | 4.389421e-59 | -8.615850e-47 |
| Msa0275010 | Msa0315940 | 0.817993 | 2.471175e-52 | -8.615850e-47 |
| Msa0275020 | Msa0315940 | 0.997482 | 2.578834e-243 | -8.615850e-47 |
| Msa0307310 | Msa0315940 | 0.805054 | 1.606449e-49 | -8.615850e-47 |
| Msa0315940 | Msa0317970 | 0.814734 | 1.325152e-51 | -8.615850e-47 |
| Msa0315940 | Msa0342750 | 0.824379 | 8.331768e-54 | -8.615850e-47 |
| Msa0315940 | Msa0343850 | 0.830828 | 2.356816e-55 | -8.615850e-47 |
| Msa0315940 | Msa0347750 | 0.807807 | 4.219948e-50 | -8.615850e-47 |
| Msa0315940 | Msa0369920 | 0.829390 | 5.287036e-55 | -8.615850e-47 |
| Msa0315940 | Msa0371950 | 0.804082 | 2.561758e-49 | -8.615850e-47 |
| Msa0315940 | Msa0381610 | -0.815739 | 7.922706e-52 | -8.615850e-47 |
| Msa0315940 | Msa0382370 | 0.825711 | 4.039558e-54 | -8.615850e-47 |
| Msa0315940 | Msa0394470 | 0.805964 | 1.034932e-49 | -8.615850e-47 |
| Msa0315940 | Msa0398200 | 0.817781 | 2.759195e-52 | -8.615850e-47 |
| Msa0315940 | Msa0403770 | 0.803989 | 2.679098e-49 | -8.615850e-47 |
| Msa0315940 | Msa0417330 | 0.823289 | 1.500742e-53 | -8.615850e-47 |
| Msa0315940 | Msa0422180 | 0.808501 | 3.003165e-50 | -8.615850e-47 |
| Msa0315940 | Msa0426930 | 0.803487 | 3.404673e-49 | -8.615850e-47 |
| Msa0315940 | Msa0432160 | 0.823477 | 1.356563e-53 | -8.615850e-47 |
| Msa0315940 | Msa0434000 | 0.827611 | 1.422125e-54 | -8.615850e-47 |
| Msa0315940 | Msa0450400 | -0.840326 | 9.302382e-58 | -8.615850e-47 |
| Msa0315940 | Msa0459260 | 0.808052 | 3.742697e-50 | -8.615850e-47 |
| Msa0315940 | Msa0476680 | 0.819698 | 1.013187e-52 | -8.615850e-47 |
| Msa0315940 | Msa0481970 | 0.805477 | 1.310159e-49 | -8.615850e-47 |
| Msa0315940 | Msa0482940 | 0.803619 | 3.197143e-49 | -8.615850e-47 |
| Msa0315940 | Msa0485490 | 0.818869 | 1.564585e-52 | -8.615850e-47 |
| Msa0315940 | Msa0509670 | 0.819369 | 1.204310e-52 | -8.615850e-47 |
| Msa0315940 | Msa0521010 | 0.825502 | 4.526892e-54 | -8.615850e-47 |
| Msa0315940 | Msa0549890 | 0.843734 | 1.167605e-58 | -8.615850e-47 |
| Msa0315940 | Msa0581400 | 0.821418 | 4.081391e-53 | -8.615850e-47 |
| Msa0315940 | Msa0610840 | -0.818096 | 2.343012e-52 | -8.615850e-47 |
| Msa0315940 | Msa0610880 | 0.801965 | 7.019927e-49 | -8.615850e-47 |
| Msa0315940 | Msa0613340 | 0.833644 | 4.736632e-56 | -8.615850e-47 |
| Msa0315940 | Msa0618470 | 0.830624 | 2.644628e-55 | -8.615850e-47 |
| Msa0315940 | Msa0647190 | 0.818513 | 1.885050e-52 | -8.615850e-47 |
| Msa0315940 | Msa0649220 | 0.803201 | 3.902598e-49 | -8.615850e-47 |
| Msa0315940 | Msa0658040 | 0.802269 | 6.078259e-49 | -8.615850e-47 |
| Msa0315940 | Msa0663800 | 0.850702 | 1.431379e-60 | -8.615850e-47 |
| Msa0315940 | Msa0669410 | 0.800806 | 1.212626e-48 | -8.615850e-47 |
| Msa0315940 | Msa0682680 | 0.821527 | 3.850677e-53 | -8.615850e-47 |
| Msa0315940 | Msa0690360 | 0.824684 | 7.062342e-54 | -8.615850e-47 |
| Msa0315940 | Msa0696540 | 0.801448 | 8.963465e-49 | -8.615850e-47 |
| Msa0315940 | Msa0705190 | 0.801396 | 9.184217e-49 | -8.615850e-47 |
| Msa0315940 | Msa0705990 | 0.805708 | 1.171661e-49 | -8.615850e-47 |
| Msa0315940 | Msa0709120 | 0.812091 | 5.048442e-51 | -8.615850e-47 |
| Msa0315940 | Msa0741070 | 0.800905 | 1.157111e-48 | -8.615850e-47 |
| Msa0315940 | Msa0748970 | 0.828168 | 1.044556e-54 | -8.615850e-47 |
| Msa0315940 | Msa0755050 | 0.803941 | 2.740996e-49 | -8.615850e-47 |
| Msa0315940 | Msa0756380 | 0.823058 | 1.699074e-53 | -8.615850e-47 |
| Msa0315940 | Msa0768290 | 0.800276 | 1.554634e-48 | -8.615850e-47 |
| Msa0315940 | Msa0801730 | 0.800655 | 1.301878e-48 | -8.615850e-47 |
| Msa0315940 | Msa0808100 | 0.808309 | 3.300423e-50 | -8.615850e-47 |
| Msa0315940 | Msa0824590 | 0.802467 | 5.534710e-49 | -8.615850e-47 |
| Msa0315940 | Msa0832340 | 0.804073 | 2.573163e-49 | -8.615850e-47 |
| Msa0315940 | Msa0842710 | 0.801566 | 8.477075e-49 | -8.615850e-47 |
| Msa0315940 | Msa0844420 | 0.825436 | 4.691379e-54 | -8.615850e-47 |
| Msa0315940 | Msa0844490 | 0.821223 | 4.526590e-53 | -8.615850e-47 |
| Msa0315940 | Msa0877710 | 0.819424 | 1.169823e-52 | -8.615850e-47 |
| Msa0315940 | Msa0888260 | 0.817262 | 3.612262e-52 | -8.615850e-47 |
| Msa0315940 | Msa0901070 | 0.811797 | 5.849861e-51 | -8.615850e-47 |
| Msa0315940 | Msa0916250 | 0.805212 | 1.488824e-49 | -8.615850e-47 |
| Msa0315940 | Msa0921420 | 0.806223 | 9.130860e-50 | -8.615850e-47 |
| Msa0315940 | Msa0925870 | 0.842807 | 2.063170e-58 | -8.615850e-47 |
| Msa0315940 | Msa0927380 | 0.811718 | 6.085681e-51 | -8.615850e-47 |
| Msa0315940 | Msa0933380 | 0.827428 | 1.573491e-54 | -8.615850e-47 |
| Msa0315940 | Msa0936390 | 0.800120 | 1.673093e-48 | -8.615850e-47 |
| Msa0315940 | Msa0953440 | 0.808558 | 2.919808e-50 | -8.615850e-47 |
| Msa0315940 | Msa0960390 | 0.820872 | 5.451763e-53 | -8.615850e-47 |
| Msa0315940 | Msa0971160 | 0.817858 | 2.651833e-52 | -8.615850e-47 |
| Msa0315940 | Msa0974950 | 0.820017 | 8.566767e-53 | -8.615850e-47 |
| Msa0315940 | Msa0987840 | 0.817493 | 3.205082e-52 | -8.615850e-47 |
| Msa0315940 | Msa0989620 | 0.800108 | 1.682142e-48 | -8.615850e-47 |
| Msa0315940 | Msa0992600 | 0.805921 | 1.056807e-49 | -8.615850e-47 |
| Msa0315940 | Msa1011090 | 0.810075 | 1.380472e-50 | -8.615850e-47 |
| Msa0315940 | Msa1026940 | 0.806916 | 6.520846e-50 | -8.615850e-47 |
| Msa0315940 | Msa1054150 | -0.835087 | 2.058100e-56 | -8.615850e-47 |
| Msa0315940 | Msa1063420 | 0.811195 | 7.906339e-51 | -8.615850e-47 |
| Msa0315940 | Msa1065010 | 0.816935 | 4.277797e-52 | -8.615850e-47 |
| Msa0315940 | Msa1076960 | 0.811707 | 6.120134e-51 | -8.615850e-47 |
| Msa0315940 | Msa1100130 | -0.808300 | 3.314887e-50 | -8.615850e-47 |
| Msa0315940 | Msa1120740 | 0.822819 | 1.931953e-53 | -8.615850e-47 |
| Msa0315940 | Msa1121480 | 0.800062 | 1.718768e-48 | -8.615850e-47 |
| Msa0315940 | Msa1121490 | 0.806895 | 6.586712e-50 | -8.615850e-47 |
| Msa0315940 | Msa1143020 | 0.809307 | 2.018208e-50 | -8.615850e-47 |
| Msa0315940 | Msa1221330 | 0.828392 | 9.222349e-55 | -8.615850e-47 |
| Msa0315940 | Msa1248830 | 0.900799 | 5.102947e-78 | -8.615850e-47 |
| Msa0315940 | Msa1254560 | 0.802896 | 4.512336e-49 | -8.615850e-47 |
| Msa0315940 | Msa1271130 | 0.826960 | 2.036603e-54 | -8.615850e-47 |
| Msa0315940 | Msa1275590 | 0.804910 | 1.721449e-49 | -8.615850e-47 |
| Msa0315940 | Msa1323690 | 0.802230 | 6.191103e-49 | -8.615850e-47 |
| Msa0315940 | Msa1342630 | 0.804139 | 2.493656e-49 | -8.615850e-47 |
| Msa0315940 | Msa1370590 | 0.800846 | 1.189760e-48 | -8.615850e-47 |
| Msa0315940 | Msa1384100 | 0.803442 | 3.479933e-49 | -8.615850e-47 |
| Msa0315940 | Msa1444120 | 0.803576 | 3.263900e-49 | -8.615850e-47 |
| Msa0315940 | Msa1452710 | 0.807798 | 4.238387e-50 | -8.615850e-47 |
| Msa0315940 | Msa1456230 | 0.826909 | 2.094444e-54 | -8.615850e-47 |
| Msa0315940 | Msa1458750 | 0.808970 | 2.383211e-50 | -8.615850e-47 |
| Msa0315940 | Msa1462360 | 0.804980 | 1.664574e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315940 | MtrunA17_Chr2g0287701 | 100.000 | 274 | 0 | 0 | 1 | 274 | 1 | 274 | 0.0 | 540 |
| Msa0315940 | MtrunA17_Chr4g0065691 | 74.545 | 275 | 68 | 2 | 1 | 274 | 1 | 274 | 1.18e-142 | 401 |
| Msa0315940 | MtrunA17_Chr4g0014341 | 38.462 | 182 | 104 | 2 | 8 | 182 | 99 | 279 | 8.42e-27 | 106 |
| Msa0315940 | MtrunA17_Chr2g0291431 | 26.866 | 268 | 173 | 9 | 2 | 254 | 53 | 312 | 1.71e-16 | 77.8 |
| Msa0315940 | MtrunA17_Chr5g0398451 | 27.197 | 239 | 153 | 8 | 11 | 236 | 83 | 313 | 1.18e-14 | 72.8 |
| Msa0315940 | MtrunA17_Chr5g0411031 | 30.220 | 182 | 125 | 2 | 27 | 206 | 64 | 245 | 2.64e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315940 | AT5G19070.1 | 69.818 | 275 | 81 | 1 | 1 | 273 | 1 | 275 | 1.11e-133 | 379 |
| Msa0315940 | AT1G03260.1 | 66.912 | 272 | 85 | 4 | 1 | 269 | 4 | 273 | 3.81e-128 | 365 |
| Msa0315940 | AT5G19070.2 | 77.340 | 203 | 46 | 0 | 1 | 203 | 1 | 203 | 1.87e-107 | 311 |
| Msa0315940 | AT1G22850.2 | 36.747 | 166 | 104 | 1 | 30 | 195 | 134 | 298 | 1.91e-25 | 102 |
| Msa0315940 | AT1G22850.1 | 39.216 | 153 | 92 | 1 | 30 | 182 | 134 | 285 | 7.18e-25 | 102 |
| Msa0315940 | AT2G02370.2 | 25.097 | 259 | 175 | 8 | 17 | 261 | 66 | 319 | 1.79e-15 | 75.5 |
| Msa0315940 | AT2G02370.1 | 25.097 | 259 | 175 | 8 | 17 | 261 | 66 | 319 | 1.79e-15 | 75.5 |
| Msa0315940 | AT2G02370.3 | 25.097 | 259 | 175 | 8 | 17 | 261 | 66 | 319 | 1.79e-15 | 75.5 |
| Msa0315940 | AT4G09580.1 | 30.986 | 142 | 96 | 2 | 57 | 196 | 119 | 260 | 7.24e-11 | 62.0 |
| Msa0315940 | AT1G71940.2 | 29.012 | 162 | 113 | 2 | 32 | 191 | 79 | 240 | 8.96e-11 | 61.6 |
Find 101 sgRNAs with CRISPR-Local
Find 440 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCCACTGATTTAAATTT+TGG | 0.081182 | 2_4:-12682675 | None:intergenic |
| AATACGGAGATCTGGCTTTA+AGG | 0.193712 | 2_4:+12682701 | Msa0315940:CDS |
| ATGCAGGCATTTATCATTAT+TGG | 0.198938 | 2_4:+12685590 | Msa0315940:intron |
| TATACAAGTGCCAGCGTTAT+TGG | 0.216697 | 2_4:-12685312 | None:intergenic |
| TGGCAAATCTTGGAGGATTA+AGG | 0.259687 | 2_4:+12679377 | Msa0315940:five_prime_UTR |
| AGATAATTTAACATGTTAAA+TGG | 0.275688 | 2_4:-12684204 | None:intergenic |
| TTTCCTGGGCTTCTGCCTTC+AGG | 0.283741 | 2_4:+12679488 | Msa0315940:CDS |
| TTAGGATACGACATTGATTA+AGG | 0.289351 | 2_4:-12679287 | None:intergenic |
| TGTACAAATCACAAATAAAT+AGG | 0.299800 | 2_4:-12686019 | None:intergenic |
| CTATGGGTTGATCGTGATCT+TGG | 0.316743 | 2_4:+12679734 | Msa0315940:CDS |
| TGGAATACATGCTGGCTTCC+TGG | 0.319846 | 2_4:+12684253 | Msa0315940:CDS |
| GAAGACCGTTTGTTGTTTCT+AGG | 0.343792 | 2_4:+12682640 | Msa0315940:CDS |
| ATTTCAAACCTGGCAAATCT+TGG | 0.343939 | 2_4:+12679367 | Msa0315940:five_prime_UTR |
| CAAAATGATTTAAGAGAATC+AGG | 0.344378 | 2_4:-12686144 | None:intergenic |
| TTATGAAGGACTTTCTACTA+TGG | 0.344847 | 2_4:+12679717 | Msa0315940:CDS |
| TAAAGTTGCCAAGTCTGCTT+TGG | 0.353815 | 2_4:+12685771 | Msa0315940:CDS |
| TATGGGTTGATCGTGATCTT+GGG | 0.365098 | 2_4:+12679735 | Msa0315940:CDS |
| TGATCGTGATCTTGGGGCAT+GGG | 0.367341 | 2_4:+12679742 | Msa0315940:CDS |
| TACAGATTGTATTACTGCTT+CGG | 0.378177 | 2_4:+12684166 | Msa0315940:intron |
| GGTAGGAGTGTAATTTCATT+TGG | 0.380159 | 2_4:-12679188 | None:intergenic |
| ATTATTGGTCTCATAGTATC+AGG | 0.386699 | 2_4:+12685605 | Msa0315940:CDS |
| CATGTTAAATTATCTCTTGT+CGG | 0.390042 | 2_4:+12684212 | Msa0315940:CDS |
| GGCTTTGTTGCCGACTCTAT+AGG | 0.396257 | 2_4:+12682384 | Msa0315940:CDS |
| ATGTATTCCACAAGTGAAAC+AGG | 0.410716 | 2_4:-12684240 | None:intergenic |
| AATAATGTAATCTTGGTTGT+AGG | 0.418105 | 2_4:-12686084 | None:intergenic |
| GCAGGAGCTGCATTTCTTCT+CGG | 0.418531 | 2_4:+12682420 | Msa0315940:CDS |
| ATATGTTGGAACAACTCTTA+AGG | 0.423797 | 2_4:+12685332 | Msa0315940:CDS |
| GGCAAATCTTGGAGGATTAA+GGG | 0.425470 | 2_4:+12679378 | Msa0315940:five_prime_UTR |
| CATAGTCAATAATGTAATCT+TGG | 0.427580 | 2_4:-12686091 | None:intergenic |
| GTTTGTTGTTTCTAGGTTGA+AGG | 0.430295 | 2_4:+12682647 | Msa0315940:CDS |
| GGCTTTATCCAAAGCAGACT+TGG | 0.434804 | 2_4:-12685779 | None:intergenic |
| TTACATTCCTTTGACTGTCT+TGG | 0.437583 | 2_4:+12680827 | Msa0315940:CDS |
| TTGATCGTGATCTTGGGGCA+TGG | 0.438082 | 2_4:+12679741 | Msa0315940:CDS |
| CGTCTTCGTCGGTTAAATCA+AGG | 0.443235 | 2_4:-12679426 | None:intergenic |
| GTTTGTTGAGAACAGAGATT+CGG | 0.449008 | 2_4:-12679240 | None:intergenic |
| TTTCACTCTTCCTATTGAAA+AGG | 0.449720 | 2_4:+12679555 | Msa0315940:CDS |
| CACAAATAAATAGGTGGAGC+TGG | 0.453665 | 2_4:-12686010 | None:intergenic |
| GGCTTCCTGGTTAGGAATGA+TGG | 0.454099 | 2_4:+12684266 | Msa0315940:CDS |
| CGAATTCTCGAAGTCGCGTT+GGG | 0.455314 | 2_4:+12685383 | Msa0315940:CDS |
| GCCGAAAACGAAGATATTGA+TGG | 0.465396 | 2_4:+12685805 | Msa0315940:CDS |
| TACATGCTGGCTTCCTGGTT+AGG | 0.466059 | 2_4:+12684258 | Msa0315940:CDS |
| CTATCTTAATTATGAGTGGT+TGG | 0.471153 | 2_4:-12685882 | None:intergenic |
| GTTCAGATCTGATGGTGGTT+CGG | 0.478100 | 2_4:-12685860 | None:intergenic |
| GTCTGCTTTGGATAAAGCCT+TGG | 0.478171 | 2_4:+12685783 | Msa0315940:CDS |
| GATGGTGGTTCGGCAACAAT+TGG | 0.478254 | 2_4:-12685850 | None:intergenic |
| GAGTCGGCAACAAAGCCAAC+TGG | 0.478879 | 2_4:-12682378 | None:intergenic |
| GCAATTGCAATACGGAGATC+TGG | 0.486740 | 2_4:+12682693 | Msa0315940:CDS |
| TCAAACCTGGCAAATCTTGG+AGG | 0.489939 | 2_4:+12679370 | Msa0315940:five_prime_UTR |
| TTCACTTGTGGAATACATGC+TGG | 0.495330 | 2_4:+12684245 | Msa0315940:CDS |
| TTTCGGTGTGTAGATTATGA+AGG | 0.495881 | 2_4:+12679703 | Msa0315940:intron |
| ACAAACTATATTTCTAATGT+AGG | 0.499499 | 2_4:-12686045 | None:intergenic |
| GATCCTGAAGGCAGAAGCCC+AGG | 0.500493 | 2_4:-12679491 | None:intergenic |
| AAGATGAAGAAGATCGGAAA+GGG | 0.500632 | 2_4:-12679209 | None:intergenic |
| TATGAAGGACTTTCTACTAT+GGG | 0.500714 | 2_4:+12679718 | Msa0315940:CDS |
| AATCAGTGGCAATTGCAATA+CGG | 0.503214 | 2_4:+12682685 | Msa0315940:CDS |
| GATCGTGATCTTGGGGCATG+GGG | 0.506242 | 2_4:+12679743 | Msa0315940:CDS |
| AAGAAGAAGATGAAGAAGAT+CGG | 0.507957 | 2_4:-12679215 | None:intergenic |
| TTAATCCTCCAAGATTTGCC+AGG | 0.508246 | 2_4:-12679375 | None:intergenic |
| CGACAATAACAGCAAGAAGA+AGG | 0.509391 | 2_4:-12679528 | None:intergenic |
| TTTCATTTGGTTATACGCGT+TGG | 0.512420 | 2_4:-12679175 | None:intergenic |
| ACGCTGGCACTTGTATATGT+TGG | 0.514411 | 2_4:+12685318 | Msa0315940:CDS |
| TTAGAAATATAGTTTGTGAC+AGG | 0.521545 | 2_4:+12686051 | Msa0315940:three_prime_UTR |
| ATAGGTGCAACTGTTGGTGC+AGG | 0.523128 | 2_4:+12682402 | Msa0315940:CDS |
| GGTGACTCCTGTTTCACTTG+TGG | 0.532053 | 2_4:+12684233 | Msa0315940:CDS |
| CCGAAAACGAAGATATTGAT+GGG | 0.535121 | 2_4:+12685806 | Msa0315940:CDS |
| CTTACAGTAAGAACTGAAGC+TGG | 0.538772 | 2_4:-12680855 | None:intergenic |
| TTTCTGACGTAACACATGGT+TGG | 0.540271 | 2_4:+12685358 | Msa0315940:CDS |
| TGAAGAAGATCGGAAAGGGT+AGG | 0.546544 | 2_4:-12679205 | None:intergenic |
| TACATTATTGACTATGTCGA+AGG | 0.546604 | 2_4:+12686098 | Msa0315940:three_prime_UTR |
| AAGACGAAGAGTGTCGTCCT+TGG | 0.550809 | 2_4:+12679443 | Msa0315940:five_prime_UTR |
| ACGAATTCTCGAAGTCGCGT+TGG | 0.553958 | 2_4:+12685382 | Msa0315940:CDS |
| GGAACTGCCAAGACAGTCAA+AGG | 0.561158 | 2_4:-12680834 | None:intergenic |
| TTCAACCTAGAAACAACAAA+CGG | 0.564771 | 2_4:-12682645 | None:intergenic |
| GAAGATGAAGAAGATCGGAA+AGG | 0.567524 | 2_4:-12679210 | None:intergenic |
| TTATCCAAAATTTAAATCAG+TGG | 0.572801 | 2_4:+12682671 | Msa0315940:CDS |
| GTCTTCGTCGGTTAAATCAA+GGG | 0.573079 | 2_4:-12679425 | None:intergenic |
| GAAAGAGAAAATTTCAAACC+TGG | 0.577636 | 2_4:+12679357 | Msa0315940:five_prime_UTR |
| AGTGGTTGGTTCAGATCTGA+TGG | 0.580099 | 2_4:-12685868 | None:intergenic |
| GACTCTATAGGTGCAACTGT+TGG | 0.588435 | 2_4:+12682396 | Msa0315940:CDS |
| AACAGTTGCACCTATAGAGT+CGG | 0.598958 | 2_4:-12682394 | None:intergenic |
| ACGACACTCTTCGTCTTCGT+CGG | 0.599770 | 2_4:-12679437 | None:intergenic |
| ATGGGTTGATCGTGATCTTG+GGG | 0.603265 | 2_4:+12679736 | Msa0315940:CDS |
| ATGGTGAATCTTCGACGCCA+AGG | 0.606150 | 2_4:-12679460 | None:intergenic |
| TCGGCAACAATTGGTAACTC+CGG | 0.609989 | 2_4:-12685841 | None:intergenic |
| GAATCTATCTTAATTATGAG+TGG | 0.610315 | 2_4:-12685886 | None:intergenic |
| TGATGGGGTTACATCCTCAC+CGG | 0.611778 | 2_4:+12685822 | Msa0315940:CDS |
| TCGTCGGTTAAATCAAGGGA+AGG | 0.616931 | 2_4:-12679421 | None:intergenic |
| ATTATTGCAGCCAATAACGC+TGG | 0.617544 | 2_4:+12685302 | Msa0315940:intron |
| AAACTGACTTACAAAACAAG+TGG | 0.618122 | 2_4:-12679767 | None:intergenic |
| GTATACCATCATTCCTAACC+AGG | 0.618303 | 2_4:-12684271 | None:intergenic |
| AAGAAGAAGAGTGATCCTGA+AGG | 0.621372 | 2_4:-12679503 | None:intergenic |
| ACAAATCACAAATAAATAGG+TGG | 0.636407 | 2_4:-12686016 | None:intergenic |
| GATCTTTCTGACGTAACACA+TGG | 0.637770 | 2_4:+12685354 | Msa0315940:CDS |
| AACATGTTAAATGGTAGCAG+CGG | 0.643337 | 2_4:-12684195 | None:intergenic |
| AAAACATCAACTATGAGGAG+AGG | 0.647989 | 2_4:-12685960 | None:intergenic |
| ATCGTGATCTTGGGGCATGG+GGG | 0.666220 | 2_4:+12679744 | Msa0315940:CDS |
| GGTTGGTTCAGATCTGATGG+TGG | 0.668075 | 2_4:-12685865 | None:intergenic |
| AACAATTGGTAACTCCGGTG+AGG | 0.687055 | 2_4:-12685836 | None:intergenic |
| CGAAAACGAAGATATTGATG+GGG | 0.696254 | 2_4:+12685807 | Msa0315940:CDS |
| TTGGCGTCGAAGATTCACCA+TGG | 0.705965 | 2_4:+12679462 | Msa0315940:exon |
| AAGGAACGGAAACACCAGTG+TGG | 0.717500 | 2_4:-12686173 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTTATAAATAATTGTAAT+TGG | + | chr2_4:12679869-12679888 | Msa0315940:intron | 10.0% |
| !!! | ATTTTACAATATAACAAATT+AGG | + | chr2_4:12681160-12681179 | Msa0315940:intron | 10.0% |
| !!! | AAATGTGAATAATTTTTTTT+TGG | + | chr2_4:12683055-12683074 | Msa0315940:intron | 10.0% |
| !!! | AATGTGAATAATTTTTTTTT+GGG | + | chr2_4:12683056-12683075 | Msa0315940:intron | 10.0% |
| !!! | TAAAAAATAGTTTTTCATTT+TGG | + | chr2_4:12683387-12683406 | Msa0315940:intron | 10.0% |
| !! | AATATTTATTTATTGTTTAG+TGG | + | chr2_4:12683794-12683813 | Msa0315940:intron | 10.0% |
| !!! | TTATTTAAGGTTTATGTTTT+AGG | - | chr2_4:12679308-12679327 | None:intergenic | 15.0% |
| !!! | AAAAATGCAGTTTTTATTTA+AGG | - | chr2_4:12679321-12679340 | None:intergenic | 15.0% |
| !!! | ATTCATAACTCAATATTTTT+TGG | + | chr2_4:12680785-12680804 | Msa0315940:intron | 15.0% |
| !! | AAATGGTAATTGAATAAATA+GGG | - | chr2_4:12681344-12681363 | None:intergenic | 15.0% |
| !! | TATAGTTAAAGTTAATACAA+GGG | - | chr2_4:12681992-12682011 | None:intergenic | 15.0% |
| !! | TTATAGTTAAAGTTAATACA+AGG | - | chr2_4:12681993-12682012 | None:intergenic | 15.0% |
| !!! | TTATTTTTGAAAATTCGTAA+CGG | - | chr2_4:12683286-12683305 | None:intergenic | 15.0% |
| !!! | AAATAGTTTTATAAAACCTA+GGG | - | chr2_4:12683970-12683989 | None:intergenic | 15.0% |
| !!! | TAAATAGTTTTATAAAACCT+AGG | - | chr2_4:12683971-12683990 | None:intergenic | 15.0% |
| !! | TATGATAAAAAATAACTGAT+AGG | - | chr2_4:12684110-12684129 | None:intergenic | 15.0% |
| !! | AGATAATTTAACATGTTAAA+TGG | - | chr2_4:12684207-12684226 | None:intergenic | 15.0% |
| !!! | ACTAAGAAATAAGAATTTTA+TGG | - | chr2_4:12685141-12685160 | None:intergenic | 15.0% |
| !!! | AAACATCAAAGTATCAATAA+GGG | - | chr2_4:12679674-12679693 | None:intergenic | 20.0% |
| !!! | AAAACATCAAAGTATCAATA+AGG | - | chr2_4:12679675-12679694 | None:intergenic | 20.0% |
| !!! | TGATGTTTTTCATGTTTTTT+CGG | + | chr2_4:12679686-12679705 | Msa0315940:intron | 20.0% |
| !! | TGGTATATGATAAAACATTA+TGG | + | chr2_4:12680141-12680160 | Msa0315940:intron | 20.0% |
| !! | TTTAGTATAATTGCAATTGA+TGG | + | chr2_4:12680265-12680284 | Msa0315940:intron | 20.0% |
| !!! | ATTCAATCTTCAATTTGTTA+GGG | + | chr2_4:12680536-12680555 | Msa0315940:intron | 20.0% |
| !!! | TTTCTTTTTTGGAAAAAAGT+AGG | + | chr2_4:12680703-12680722 | Msa0315940:intron | 20.0% |
| !! | TAACATATTGATCTTAATTG+TGG | + | chr2_4:12680733-12680752 | Msa0315940:intron | 20.0% |
| !! | AATTGTATTGTATCTTCTTT+AGG | + | chr2_4:12681004-12681023 | Msa0315940:intron | 20.0% |
| !! | AGGAAATAAAACATAAGATA+AGG | + | chr2_4:12681180-12681199 | Msa0315940:intron | 20.0% |
| !! | AAATAGGGAATTGTTTATTT+GGG | - | chr2_4:12681329-12681348 | None:intergenic | 20.0% |
| !! | TAAATAGGGAATTGTTTATT+TGG | - | chr2_4:12681330-12681349 | None:intergenic | 20.0% |
| !! | CAAATGGTAATTGAATAAAT+AGG | - | chr2_4:12681345-12681364 | None:intergenic | 20.0% |
| !!! | CTTTTTGATATCGTTATTTT+CGG | + | chr2_4:12682200-12682219 | Msa0315940:intron | 20.0% |
| !! | TTATCCAAAATTTAAATCAG+TGG | + | chr2_4:12682671-12682690 | Msa0315940:CDS | 20.0% |
| !! | AATCAAGACTAAATTTGAAA+TGG | - | chr2_4:12682772-12682791 | None:intergenic | 20.0% |
| !!! | TGAATTTGGTGTATAATTAA+GGG | + | chr2_4:12682846-12682865 | Msa0315940:intron | 20.0% |
| !! | TTACCATTAAAATTTAACAG+GGG | - | chr2_4:12682920-12682939 | None:intergenic | 20.0% |
| !! | CTTACCATTAAAATTTAACA+GGG | - | chr2_4:12682921-12682940 | None:intergenic | 20.0% |
| !! | ACTTACCATTAAAATTTAAC+AGG | - | chr2_4:12682922-12682941 | None:intergenic | 20.0% |
| !!! | TTGCAAAAAGTTTTCAAAAT+AGG | - | chr2_4:12682982-12683001 | None:intergenic | 20.0% |
| !!! | ATTTTATAAGGACTATTTTG+AGG | - | chr2_4:12683022-12683041 | None:intergenic | 20.0% |
| !!! | TGCTTAGTTTTTATTTTAAC+AGG | - | chr2_4:12683160-12683179 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTTTGTCACAAG+CGG | - | chr2_4:12683212-12683231 | None:intergenic | 20.0% |
| !!! | AGTTATCAAAAATGATTTTC+TGG | - | chr2_4:12683358-12683377 | None:intergenic | 20.0% |
| !!! | TTTTTATAATCCACAACTAA+CGG | + | chr2_4:12683479-12683498 | Msa0315940:intron | 20.0% |
| !! | CAAGAATACTTTCTATTAAA+GGG | + | chr2_4:12683566-12683585 | Msa0315940:intron | 20.0% |
| !! | CTATATATCTATTAGTCATA+AGG | + | chr2_4:12683819-12683838 | Msa0315940:intron | 20.0% |
| !! | TTGAAATCTCTTATATCTAT+CGG | + | chr2_4:12684471-12684490 | Msa0315940:intron | 20.0% |
| !! | TTATTTAGGTACAAAATGAA+AGG | - | chr2_4:12684504-12684523 | None:intergenic | 20.0% |
| !!! | TGGAATTCATCTATATTTTA+TGG | - | chr2_4:12684918-12684937 | None:intergenic | 20.0% |
| !! | ATTATTCTTGTTGCATATTT+GGG | + | chr2_4:12685174-12685193 | Msa0315940:intron | 20.0% |
| !! | TATTAACATATTGCTGTAAT+TGG | - | chr2_4:12685270-12685289 | None:intergenic | 20.0% |
| !!! | TTTTCTTAATCAGATCAATT+AGG | + | chr2_4:12685512-12685531 | Msa0315940:intron | 20.0% |
| !!! | TAAGCATTAATTTAAGTTCT+CGG | + | chr2_4:12685706-12685725 | Msa0315940:intron | 20.0% |
| !! | TGTACAAATCACAAATAAAT+AGG | - | chr2_4:12686022-12686041 | None:intergenic | 20.0% |
| !!! | ACAAACTATATTTCTAATGT+AGG | - | chr2_4:12686048-12686067 | None:intergenic | 20.0% |
| !! | AAAAAGCAAACCTTTTCAAT+AGG | - | chr2_4:12679568-12679587 | None:intergenic | 25.0% |
| ! | ATCGAATAGAAAATCCAAAA+GGG | - | chr2_4:12679598-12679617 | None:intergenic | 25.0% |
| ! | AATCGAATAGAAAATCCAAA+AGG | - | chr2_4:12679599-12679618 | None:intergenic | 25.0% |
| !!! | TTTCTATTCGATTTTGATTC+TGG | + | chr2_4:12679606-12679625 | Msa0315940:intron | 25.0% |
| !!! | TTCTATTCGATTTTGATTCT+GGG | + | chr2_4:12679607-12679626 | Msa0315940:intron | 25.0% |
| !!! | CTCTAAAATTGACATATTGT+CGG | + | chr2_4:12679802-12679821 | Msa0315940:intron | 25.0% |
| ! | AAATTACTACATTAGAGAGT+TGG | + | chr2_4:12679929-12679948 | Msa0315940:intron | 25.0% |
| ! | AATTACTACATTAGAGAGTT+GGG | + | chr2_4:12679930-12679949 | Msa0315940:intron | 25.0% |
| ! | TGAATGAATTGGATAGAAAA+TGG | + | chr2_4:12680121-12680140 | Msa0315940:intron | 25.0% |
| ! | AAACTTCACAAATTGAAACA+AGG | - | chr2_4:12680248-12680267 | None:intergenic | 25.0% |
| !!! | TTGTAGTTCTAACATCATTT+AGG | + | chr2_4:12680393-12680412 | Msa0315940:intron | 25.0% |
| !!! | CTAACATCATTTAGGTTTTA+TGG | + | chr2_4:12680401-12680420 | Msa0315940:intron | 25.0% |
| !! | GATTCAATCTTCAATTTGTT+AGG | + | chr2_4:12680535-12680554 | Msa0315940:intron | 25.0% |
| ! | TATACTTGAAGTAGAGTTAT+TGG | + | chr2_4:12680577-12680596 | Msa0315940:intron | 25.0% |
| ! | TGATTGTATTGTTCCAAATT+TGG | + | chr2_4:12680664-12680683 | Msa0315940:intron | 25.0% |
| !! | CTTTTGTAGGTTTTCTTTTT+TGG | + | chr2_4:12680692-12680711 | Msa0315940:intron | 25.0% |
| !!! | CATAACTCAATATTTTTTGG+TGG | + | chr2_4:12680788-12680807 | Msa0315940:intron | 25.0% |
| !!! | AATATTTTTTGGTGGTTTTC+AGG | + | chr2_4:12680796-12680815 | Msa0315940:intron | 25.0% |
| !!! | ATATTTTTTGGTGGTTTTCA+GGG | + | chr2_4:12680797-12680816 | Msa0315940:intron | 25.0% |
| !! | ACTAAGAACTATTGTTACTT+TGG | + | chr2_4:12680879-12680898 | Msa0315940:intron | 25.0% |
| ! | TTCAAAACTGAATTCATCAT+GGG | + | chr2_4:12681037-12681056 | Msa0315940:intron | 25.0% |
| ! | TCAGACAGTATAATGTTATT+AGG | - | chr2_4:12681383-12681402 | None:intergenic | 25.0% |
| ! | ATAACATTATACTGTCTGAT+TGG | + | chr2_4:12681384-12681403 | Msa0315940:intron | 25.0% |
| ! | ATATTAGTAAACATTACGAG+AGG | - | chr2_4:12681441-12681460 | None:intergenic | 25.0% |
| ! | TCGTAATGTTTACTAATATG+TGG | + | chr2_4:12681442-12681461 | Msa0315940:intron | 25.0% |
| !! | TACTTCTTTTGACAATTTCA+GGG | - | chr2_4:12681636-12681655 | None:intergenic | 25.0% |
| !! | ATACTTCTTTTGACAATTTC+AGG | - | chr2_4:12681637-12681656 | None:intergenic | 25.0% |
| ! | TTTAAATAATGAGAACAGAG+AGG | + | chr2_4:12681870-12681889 | Msa0315940:intron | 25.0% |
| ! | TTAAATAATGAGAACAGAGA+GGG | + | chr2_4:12681871-12681890 | Msa0315940:intron | 25.0% |
| !! | AAGTCAATCATTTTCTTCAA+TGG | + | chr2_4:12682021-12682040 | Msa0315940:intron | 25.0% |
| ! | AAAATGCATTGTAATAGAGA+TGG | - | chr2_4:12682261-12682280 | None:intergenic | 25.0% |
| !! | AGGTTTTTCTTGATTAAAAC+AGG | + | chr2_4:12682536-12682555 | Msa0315940:intron | 25.0% |
| !! | GGTTTTTCTTGATTAAAACA+GGG | + | chr2_4:12682537-12682556 | Msa0315940:intron | 25.0% |
| ! | ATTTAAATAAGTAACCTCAC+AGG | - | chr2_4:12682598-12682617 | None:intergenic | 25.0% |
| !!! | ATTGCCACTGATTTAAATTT+TGG | - | chr2_4:12682678-12682697 | None:intergenic | 25.0% |
| !! | GTTAATTTTCTCAAGTCTTT+TGG | + | chr2_4:12682742-12682761 | Msa0315940:intron | 25.0% |
| ! | ATACACCAAATTCACAAAAA+CGG | - | chr2_4:12682840-12682859 | None:intergenic | 25.0% |
| !!! | GTGAATTTGGTGTATAATTA+AGG | + | chr2_4:12682845-12682864 | Msa0315940:intron | 25.0% |
| ! | TCTTACAAACTGCAATATTA+TGG | - | chr2_4:12682953-12682972 | None:intergenic | 25.0% |
| ! | AATATTGCAGTTTGTAAGAA+TGG | + | chr2_4:12682954-12682973 | Msa0315940:intron | 25.0% |
| !! | TTGAAAACTTTTTGCAAAAC+TGG | + | chr2_4:12682985-12683004 | Msa0315940:intron | 25.0% |
| ! | AGTCCTTATAAAATGCAAAT+AGG | + | chr2_4:12683028-12683047 | Msa0315940:intron | 25.0% |
| ! | GTCCTTATAAAATGCAAATA+GGG | + | chr2_4:12683029-12683048 | Msa0315940:intron | 25.0% |
| !!! | TTTTTTTTTTTGTCACAAGC+GGG | - | chr2_4:12683211-12683230 | None:intergenic | 25.0% |
| !! | TTTTATAATCCACAACTAAC+GGG | + | chr2_4:12683480-12683499 | Msa0315940:intron | 25.0% |
| ! | TTAGTTTAATTGCCAATCAA+TGG | - | chr2_4:12683517-12683536 | None:intergenic | 25.0% |
| ! | GCAAGAATACTTTCTATTAA+AGG | + | chr2_4:12683565-12683584 | Msa0315940:intron | 25.0% |
| !! | TATAGTATAATTTTGTGCAG+TGG | - | chr2_4:12683728-12683747 | None:intergenic | 25.0% |
| ! | CATGTTAAATTATCTCTTGT+CGG | + | chr2_4:12684212-12684231 | Msa0315940:CDS | 25.0% |
| ! | CACAATAGAAGTTTATCATT+TGG | - | chr2_4:12684333-12684352 | None:intergenic | 25.0% |
| ! | TATTGTGCTTTATGATTTCT+AGG | + | chr2_4:12684346-12684365 | Msa0315940:intron | 25.0% |
| ! | AACACATTACACATATTTCA+TGG | + | chr2_4:12684547-12684566 | Msa0315940:intron | 25.0% |
| !! | CATAATTTGCGTTAATAGTT+CGG | - | chr2_4:12684731-12684750 | None:intergenic | 25.0% |
| !! | ATGCATATTGTGAAATGTTT+TGG | + | chr2_4:12684872-12684891 | Msa0315940:intron | 25.0% |
| !!! | ATATTTTTTAGGCAGATAGA+TGG | + | chr2_4:12684972-12684991 | Msa0315940:intron | 25.0% |
| ! | CATTATTCTTGTTGCATATT+TGG | + | chr2_4:12685173-12685192 | Msa0315940:intron | 25.0% |
| !!! | ATTTAAGTTCTCGGTTATTT+TGG | + | chr2_4:12685715-12685734 | Msa0315940:intron | 25.0% |
| !!! | TTTAAGTTCTCGGTTATTTT+GGG | + | chr2_4:12685716-12685735 | Msa0315940:intron | 25.0% |
| ! | GAATCTATCTTAATTATGAG+TGG | - | chr2_4:12685889-12685908 | None:intergenic | 25.0% |
| ! | AAGAAAAAACATCAACTATG+AGG | - | chr2_4:12685968-12685987 | None:intergenic | 25.0% |
| ! | ACAAATCACAAATAAATAGG+TGG | - | chr2_4:12686019-12686038 | None:intergenic | 25.0% |
| !! | TTAGAAATATAGTTTGTGAC+AGG | + | chr2_4:12686051-12686070 | Msa0315940:three_prime_UTR | 25.0% |
| ! | AATAATGTAATCTTGGTTGT+AGG | - | chr2_4:12686087-12686106 | None:intergenic | 25.0% |
| ! | CATAGTCAATAATGTAATCT+TGG | - | chr2_4:12686094-12686113 | None:intergenic | 25.0% |
| ! | CAAAATGATTTAAGAGAATC+AGG | - | chr2_4:12686147-12686166 | None:intergenic | 25.0% |
| AAGAAGAAGATGAAGAAGAT+CGG | - | chr2_4:12679218-12679237 | None:intergenic | 30.0% | |
| ! | TTAGGATACGACATTGATTA+AGG | - | chr2_4:12679290-12679309 | None:intergenic | 30.0% |
| GAAAGAGAAAATTTCAAACC+TGG | + | chr2_4:12679357-12679376 | Msa0315940:five_prime_UTR | 30.0% | |
| TTTCACTCTTCCTATTGAAA+AGG | + | chr2_4:12679555-12679574 | Msa0315940:CDS | 30.0% | |
| TCGAATAGAAAATCCAAAAG+GGG | - | chr2_4:12679597-12679616 | None:intergenic | 30.0% | |
| TTATGAAGGACTTTCTACTA+TGG | + | chr2_4:12679717-12679736 | Msa0315940:CDS | 30.0% | |
| TATGAAGGACTTTCTACTAT+GGG | + | chr2_4:12679718-12679737 | Msa0315940:CDS | 30.0% | |
| ! | AAACTGACTTACAAAACAAG+TGG | - | chr2_4:12679770-12679789 | None:intergenic | 30.0% |
| TAACTACACAGATTGAAACA+AGG | - | chr2_4:12679855-12679874 | None:intergenic | 30.0% | |
| AATTATTTGCGAAGACTAGA+TGG | + | chr2_4:12679895-12679914 | Msa0315940:intron | 30.0% | |
| ATTATTTGCGAAGACTAGAT+GGG | + | chr2_4:12679896-12679915 | Msa0315940:intron | 30.0% | |
| ATTACTACATTAGAGAGTTG+GGG | + | chr2_4:12679931-12679950 | Msa0315940:intron | 30.0% | |
| AGATCTAGAGATGAATGAAT+TGG | + | chr2_4:12680110-12680129 | Msa0315940:intron | 30.0% | |
| GTATTGTTCCAAATTTGGAA+AGG | + | chr2_4:12680669-12680688 | Msa0315940:intron | 30.0% | |
| TACAAAAGCCTTTCCAAATT+TGG | - | chr2_4:12680680-12680699 | None:intergenic | 30.0% | |
| ! | AAATTTGGAAAGGCTTTTGT+AGG | + | chr2_4:12680679-12680698 | Msa0315940:intron | 30.0% |
| !!! | CTTTTTTGGAAAAAAGTAGG+AGG | + | chr2_4:12680706-12680725 | Msa0315940:intron | 30.0% |
| TGATCTTAATTGTGGTTCTT+TGG | + | chr2_4:12680741-12680760 | Msa0315940:intron | 30.0% | |
| GATCTTAATTGTGGTTCTTT+GGG | + | chr2_4:12680742-12680761 | Msa0315940:intron | 30.0% | |
| CGGATATAAACAATTTATGC+TGG | - | chr2_4:12680953-12680972 | None:intergenic | 30.0% | |
| GTTCAAAACTGAATTCATCA+TGG | + | chr2_4:12681036-12681055 | Msa0315940:intron | 30.0% | |
| ! | CATGGGTTATCATATAGAAA+CGG | + | chr2_4:12681054-12681073 | Msa0315940:intron | 30.0% |
| ! | ATGGGTTATCATATAGAAAC+GGG | + | chr2_4:12681055-12681074 | Msa0315940:intron | 30.0% |
| TTTATTGAGTGGTTATGAGA+GGG | - | chr2_4:12681298-12681317 | None:intergenic | 30.0% | |
| ATTTATTGAGTGGTTATGAG+AGG | - | chr2_4:12681299-12681318 | None:intergenic | 30.0% | |
| GACAGTATAATGTTATTAGG+CGG | - | chr2_4:12681380-12681399 | None:intergenic | 30.0% | |
| ! | ACTTCTTTTGACAATTTCAG+GGG | - | chr2_4:12681635-12681654 | None:intergenic | 30.0% |
| TGACAGACAATAACACTTAT+CGG | + | chr2_4:12681694-12681713 | Msa0315940:intron | 30.0% | |
| TGATAGTTTAGAAATGTCAG+TGG | - | chr2_4:12681732-12681751 | None:intergenic | 30.0% | |
| TGATAAGAACCAGACATTAT+TGG | - | chr2_4:12681780-12681799 | None:intergenic | 30.0% | |
| GTTAAAGTTAATACAAGGGA+TGG | - | chr2_4:12681988-12682007 | None:intergenic | 30.0% | |
| TTGTATTCAGTTTGTAACTC+AGG | + | chr2_4:12682058-12682077 | Msa0315940:intron | 30.0% | |
| ! | TTTTCTTGATTAAAACAGGG+TGG | + | chr2_4:12682540-12682559 | Msa0315940:intron | 30.0% |
| TGTTGTCAAATTCTACAGAT+TGG | + | chr2_4:12682618-12682637 | Msa0315940:intron | 30.0% | |
| TTCAACCTAGAAACAACAAA+CGG | - | chr2_4:12682648-12682667 | None:intergenic | 30.0% | |
| AAGGTTTGTAGACTTCTTAT+TGG | + | chr2_4:12682720-12682739 | Msa0315940:intron | 30.0% | |
| ! | CTTGATTTTACCTTGTACAT+AGG | + | chr2_4:12682785-12682804 | Msa0315940:intron | 30.0% |
| !! | CTAAACCGTTTTTGTGAATT+TGG | + | chr2_4:12682832-12682851 | Msa0315940:intron | 30.0% |
| ! | TAGCCCCTGTTAAATTTTAA+TGG | + | chr2_4:12682914-12682933 | Msa0315940:intron | 30.0% |
| TACAAACTGCAATATTATGG+AGG | - | chr2_4:12682950-12682969 | None:intergenic | 30.0% | |
| ! | GTCCCTATTTGCATTTTATA+AGG | - | chr2_4:12683034-12683053 | None:intergenic | 30.0% |
| ! | TTGAAAGCTCATGATTTTGT+AGG | + | chr2_4:12683086-12683105 | Msa0315940:intron | 30.0% |
| ! | TGAAAGCTCATGATTTTGTA+GGG | + | chr2_4:12683087-12683106 | Msa0315940:intron | 30.0% |
| AACTAACAAAAAACCGTGAT+CGG | + | chr2_4:12683531-12683550 | Msa0315940:intron | 30.0% | |
| ! | TATGTTGGTTAATGTTACTG+AGG | + | chr2_4:12683597-12683616 | Msa0315940:intron | 30.0% |
| CAAACAAATTATACACTGCA+TGG | - | chr2_4:12683672-12683691 | None:intergenic | 30.0% | |
| TATTAGTCATAAGGATCCTT+TGG | + | chr2_4:12683828-12683847 | Msa0315940:intron | 30.0% | |
| ATTAGTCATAAGGATCCTTT+GGG | + | chr2_4:12683829-12683848 | Msa0315940:intron | 30.0% | |
| ! | TATAACATGCATCTGATTTG+AGG | + | chr2_4:12683860-12683879 | Msa0315940:intron | 30.0% |
| CATATAGCTGGATAAGATAA+AGG | - | chr2_4:12683899-12683918 | None:intergenic | 30.0% | |
| CTTTATCTTATCCAGCTATA+TGG | + | chr2_4:12683897-12683916 | Msa0315940:intron | 30.0% | |
| AATGTCACAAAATAAGCCAT+TGG | - | chr2_4:12684008-12684027 | None:intergenic | 30.0% | |
| !! | CATTTTGTTTGTACATGACT+TGG | + | chr2_4:12684072-12684091 | Msa0315940:intron | 30.0% |
| ACAATCTGTAAGGACAAATA+AGG | - | chr2_4:12684156-12684175 | None:intergenic | 30.0% | |
| AAGCAGTAATACAATCTGTA+AGG | - | chr2_4:12684166-12684185 | None:intergenic | 30.0% | |
| TACAGATTGTATTACTGCTT+CGG | + | chr2_4:12684166-12684185 | Msa0315940:intron | 30.0% | |
| CCGGATATATAATTGTTCAA+GGG | - | chr2_4:12684303-12684322 | None:intergenic | 30.0% | |
| CCCTTGAACAATTATATATC+CGG | + | chr2_4:12684300-12684319 | Msa0315940:intron | 30.0% | |
| CCTTGAACAATTATATATCC+GGG | + | chr2_4:12684301-12684320 | Msa0315940:intron | 30.0% | |
| TTTATCATTTGGAGAATTCC+CGG | - | chr2_4:12684322-12684341 | None:intergenic | 30.0% | |
| TTGCTAAAAGAAATCCAATC+AGG | - | chr2_4:12684381-12684400 | None:intergenic | 30.0% | |
| CTGTTTACTAAAAGATGCAT+AGG | + | chr2_4:12684414-12684433 | Msa0315940:intron | 30.0% | |
| GATTTCAAGATAGCTTTCAA+AGG | - | chr2_4:12684459-12684478 | None:intergenic | 30.0% | |
| !!! | ACACTGGCTCTTTTTTATTT+AGG | - | chr2_4:12684518-12684537 | None:intergenic | 30.0% |
| CGAACTATTAACGCAAATTA+TGG | + | chr2_4:12684729-12684748 | Msa0315940:intron | 30.0% | |
| ! | TTTTGGATTTTGCTTTACGA+TGG | + | chr2_4:12684889-12684908 | Msa0315940:intron | 30.0% |
| ! | TTTGGATTTTGCTTTACGAT+GGG | + | chr2_4:12684890-12684909 | Msa0315940:intron | 30.0% |
| !!! | ATGACTGTGGCATATTTTTT+AGG | + | chr2_4:12684961-12684980 | Msa0315940:intron | 30.0% |
| !!! | ACATTCAATTAGCTTTTGCA+AGG | + | chr2_4:12685001-12685020 | Msa0315940:intron | 30.0% |
| TGGTATATATGATTGTGTGT+CGG | + | chr2_4:12685039-12685058 | Msa0315940:intron | 30.0% | |
| CAACAAGAATAATGACAGAT+AGG | - | chr2_4:12685167-12685186 | None:intergenic | 30.0% | |
| TAGTGAGCTGTAAAAACATA+TGG | - | chr2_4:12685242-12685261 | None:intergenic | 30.0% | |
| ATATGTTGGAACAACTCTTA+AGG | + | chr2_4:12685332-12685351 | Msa0315940:CDS | 30.0% | |
| GATGTTCATCAGTAAGTATA+AGG | - | chr2_4:12685465-12685484 | None:intergenic | 30.0% | |
| ATGCAGGCATTTATCATTAT+TGG | + | chr2_4:12685590-12685609 | Msa0315940:intron | 30.0% | |
| ! | ATTATTGGTCTCATAGTATC+AGG | + | chr2_4:12685605-12685624 | Msa0315940:CDS | 30.0% |
| CTATCTTAATTATGAGTGGT+TGG | - | chr2_4:12685885-12685904 | None:intergenic | 30.0% | |
| ! | TACATTATTGACTATGTCGA+AGG | + | chr2_4:12686098-12686117 | Msa0315940:three_prime_UTR | 30.0% |
| TTTCATTTGGTTATACGCGT+TGG | - | chr2_4:12679178-12679197 | None:intergenic | 35.0% | |
| ! | GGTAGGAGTGTAATTTCATT+TGG | - | chr2_4:12679191-12679210 | None:intergenic | 35.0% |
| AAGATGAAGAAGATCGGAAA+GGG | - | chr2_4:12679212-12679231 | None:intergenic | 35.0% | |
| ! | GTTTGTTGAGAACAGAGATT+CGG | - | chr2_4:12679243-12679262 | None:intergenic | 35.0% |
| ATTTCAAACCTGGCAAATCT+TGG | + | chr2_4:12679367-12679386 | Msa0315940:five_prime_UTR | 35.0% | |
| ! | TTTCGGTGTGTAGATTATGA+AGG | + | chr2_4:12679703-12679722 | Msa0315940:intron | 35.0% |
| ! | TGACATATTGTCGGAGATTT+TGG | + | chr2_4:12679811-12679830 | Msa0315940:intron | 35.0% |
| ! | GGTAACATCTAGAGTAGAAA+AGG | + | chr2_4:12679952-12679971 | Msa0315940:intron | 35.0% |
| ! | AACATCTAGAGTAGAAAAGG+TGG | + | chr2_4:12679955-12679974 | Msa0315940:intron | 35.0% |
| TAAACAACCTAAGCCTAGTT+TGG | - | chr2_4:12679982-12680001 | None:intergenic | 35.0% | |
| ! | AAACTAGGCTTAGGTTGTTT+AGG | + | chr2_4:12679981-12680000 | Msa0315940:intron | 35.0% |
| GGATAATTAGATCACTAGAG+AGG | + | chr2_4:12680057-12680076 | Msa0315940:intron | 35.0% | |
| CAACAACAACAACAACAATC+AGG | - | chr2_4:12680210-12680229 | None:intergenic | 35.0% | |
| !!! | TGATGGAGTTTTTTGTGAAG+AGG | + | chr2_4:12680282-12680301 | Msa0315940:intron | 35.0% |
| TGTGAAGAGGAAATATTGTG+TGG | + | chr2_4:12680295-12680314 | Msa0315940:intron | 35.0% | |
| CAACATCCTTATGTTAGCTA+CGG | - | chr2_4:12680376-12680395 | None:intergenic | 35.0% | |
| ! | AAACAATGCGATTTTTGACG+TGG | + | chr2_4:12680434-12680453 | Msa0315940:intron | 35.0% |
| TGAGCGTTCTTTAGATTGTA+AGG | + | chr2_4:12680618-12680637 | Msa0315940:intron | 35.0% | |
| AAGTATCAACACACATGACA+AGG | - | chr2_4:12680645-12680664 | None:intergenic | 35.0% | |
| GAGTTATGAATTGTGTCAAC+TGG | - | chr2_4:12680776-12680795 | None:intergenic | 35.0% | |
| TTACATTCCTTTGACTGTCT+TGG | + | chr2_4:12680827-12680846 | Msa0315940:CDS | 35.0% | |
| ACAATCCAAAGCAACATTGT+AGG | - | chr2_4:12680979-12680998 | None:intergenic | 35.0% | |
| !! | CATTCTCTGTTCTGAGATAA+CGG | - | chr2_4:12681136-12681155 | None:intergenic | 35.0% |
| AGAGATAGTCTACTGTTACA+AGG | + | chr2_4:12681205-12681224 | Msa0315940:intron | 35.0% | |
| !! | GACTCTAGAATTTCTTGGAT+AGG | - | chr2_4:12681236-12681255 | None:intergenic | 35.0% |
| !! | TCCAAGAAATTCTAGAGTCT+TGG | + | chr2_4:12681237-12681256 | Msa0315940:intron | 35.0% |
| !! | ACCAAGACTCTAGAATTTCT+TGG | - | chr2_4:12681241-12681260 | None:intergenic | 35.0% |
| CAAGATCTCTAATTCTTGGA+AGG | - | chr2_4:12681269-12681288 | None:intergenic | 35.0% | |
| CTTCCAAGAATTAGAGATCT+TGG | + | chr2_4:12681267-12681286 | Msa0315940:intron | 35.0% | |
| TGACCAAGATCTCTAATTCT+TGG | - | chr2_4:12681273-12681292 | None:intergenic | 35.0% | |
| ! | GGGAATTGTTTATTTGGGAT+CGG | - | chr2_4:12681324-12681343 | None:intergenic | 35.0% |
| ! | GCGGCAGTAATTTTATCAAA+TGG | - | chr2_4:12681361-12681380 | None:intergenic | 35.0% |
| AAATGTCAGTGGTAGATTTC+AGG | - | chr2_4:12681721-12681740 | None:intergenic | 35.0% | |
| !! | CTTGTTGTTCCAATAATGTC+TGG | + | chr2_4:12681768-12681787 | Msa0315940:intron | 35.0% |
| !! | AATGTCTGGTTCTTATCACA+TGG | + | chr2_4:12681782-12681801 | Msa0315940:intron | 35.0% |
| ACATGGAACTCAATGTCATT+CGG | + | chr2_4:12681799-12681818 | Msa0315940:intron | 35.0% | |
| CAGTTTGTAACTCAGGATAA+AGG | + | chr2_4:12682065-12682084 | Msa0315940:intron | 35.0% | |
| AGAGATGATTTCCTTATGCA+AGG | + | chr2_4:12682126-12682145 | Msa0315940:intron | 35.0% | |
| AAAATGCAAGTCCTTGCATA+AGG | - | chr2_4:12682140-12682159 | None:intergenic | 35.0% | |
| GAAGTGTGAAACGAATAGAA+GGG | - | chr2_4:12682232-12682251 | None:intergenic | 35.0% | |
| ! | AGAAGTGTGAAACGAATAGA+AGG | - | chr2_4:12682233-12682252 | None:intergenic | 35.0% |
| !!! | TTGGTGGTGGTTATCTTTTT+GGG | + | chr2_4:12682352-12682371 | Msa0315940:CDS | 35.0% |
| CTGCTGAATAGCTAAATGAT+AGG | + | chr2_4:12682516-12682535 | Msa0315940:intron | 35.0% | |
| GGGTGGTCTTCATTATATAA+CGG | + | chr2_4:12682557-12682576 | Msa0315940:intron | 35.0% | |
| !! | ATTGTTATTTGTGTCCTGTG+AGG | + | chr2_4:12682581-12682600 | Msa0315940:intron | 35.0% |
| !! | GTTTGTTGTTTCTAGGTTGA+AGG | + | chr2_4:12682647-12682666 | Msa0315940:CDS | 35.0% |
| AATCAGTGGCAATTGCAATA+CGG | + | chr2_4:12682685-12682704 | Msa0315940:CDS | 35.0% | |
| AAACAAGGATCCTATGTACA+AGG | - | chr2_4:12682798-12682817 | None:intergenic | 35.0% | |
| ! | TGAAAGCTTGCGATTTTGTA+GGG | - | chr2_4:12682889-12682908 | None:intergenic | 35.0% |
| ! | TTGAAAGCTTGCGATTTTGT+AGG | - | chr2_4:12682890-12682909 | None:intergenic | 35.0% |
| GATCTAAATGGACCATTGAT+TGG | + | chr2_4:12683502-12683521 | Msa0315940:intron | 35.0% | |
| GCTAATTTAACATCCGATCA+CGG | - | chr2_4:12683547-12683566 | None:intergenic | 35.0% | |
| ! | CTTTCTATTAAAGGGCATGT+AGG | + | chr2_4:12683574-12683593 | Msa0315940:intron | 35.0% |
| !! | CCACAGATAATTTCTGGTTT+AGG | - | chr2_4:12683627-12683646 | None:intergenic | 35.0% |
| CCTAAACCAGAAATTATCTG+TGG | + | chr2_4:12683624-12683643 | Msa0315940:intron | 35.0% | |
| TTAGTCATAAGGATCCTTTG+GGG | + | chr2_4:12683830-12683849 | Msa0315940:intron | 35.0% | |
| TGTTATAATTACTCCCCCAA+AGG | - | chr2_4:12683847-12683866 | None:intergenic | 35.0% | |
| TAGCTGGATAAGATAAAGGT+TGG | - | chr2_4:12683895-12683914 | None:intergenic | 35.0% | |
| TCTTATCCAGCTATATGGTT+TGG | + | chr2_4:12683902-12683921 | Msa0315940:intron | 35.0% | |
| CTTATCCAGCTATATGGTTT+GGG | + | chr2_4:12683903-12683922 | Msa0315940:intron | 35.0% | |
| TTATCCAGCTATATGGTTTG+GGG | + | chr2_4:12683904-12683923 | Msa0315940:intron | 35.0% | |
| AACATGTTAAATGGTAGCAG+CGG | - | chr2_4:12684198-12684217 | None:intergenic | 35.0% | |
| ATGTATTCCACAAGTGAAAC+AGG | - | chr2_4:12684243-12684262 | None:intergenic | 35.0% | |
| CCCGGATATATAATTGTTCA+AGG | - | chr2_4:12684304-12684323 | None:intergenic | 35.0% | |
| CTAGGTCATTTATACCTGAT+TGG | + | chr2_4:12684364-12684383 | Msa0315940:intron | 35.0% | |
| !!! | ATGTGTTTTTTATGCGACAC+TGG | - | chr2_4:12684534-12684553 | None:intergenic | 35.0% |
| !! | ATCAATAACGGATTGGCAAT+AGG | - | chr2_4:12684941-12684960 | None:intergenic | 35.0% |
| !! | CAGTCATATCAATAACGGAT+TGG | - | chr2_4:12684948-12684967 | None:intergenic | 35.0% |
| ATCCGTTATTGATATGACTG+TGG | + | chr2_4:12684948-12684967 | Msa0315940:intron | 35.0% | |
| TGCCACAGTCATATCAATAA+CGG | - | chr2_4:12684953-12684972 | None:intergenic | 35.0% | |
| ! | CAAGGAAGTGCATTTATTGT+TGG | + | chr2_4:12685019-12685038 | Msa0315940:intron | 35.0% |
| !! | TGTGTCGGTTGAATTTAAGT+TGG | + | chr2_4:12685054-12685073 | Msa0315940:intron | 35.0% |
| !! | GTGTCGGTTGAATTTAAGTT+GGG | + | chr2_4:12685055-12685074 | Msa0315940:intron | 35.0% |
| GAGCTGTAAAAACATATGGA+CGG | - | chr2_4:12685238-12685257 | None:intergenic | 35.0% | |
| GCTGCAATAATAACAGTATC+AGG | - | chr2_4:12685293-12685312 | None:intergenic | 35.0% | |
| !!! | TTATTTTGGGTTATGTGCAG+TGG | + | chr2_4:12685729-12685748 | Msa0315940:intron | 35.0% |
| ! | CCCATCAATATCTTCGTTTT+CGG | - | chr2_4:12685809-12685828 | None:intergenic | 35.0% |
| CCGAAAACGAAGATATTGAT+GGG | + | chr2_4:12685806-12685825 | Msa0315940:CDS | 35.0% | |
| CGAAAACGAAGATATTGATG+GGG | + | chr2_4:12685807-12685826 | Msa0315940:CDS | 35.0% | |
| AAAACATCAACTATGAGGAG+AGG | - | chr2_4:12685963-12685982 | None:intergenic | 35.0% | |
| GAAGATGAAGAAGATCGGAA+AGG | - | chr2_4:12679213-12679232 | None:intergenic | 40.0% | |
| TTAATCCTCCAAGATTTGCC+AGG | - | chr2_4:12679378-12679397 | None:intergenic | 40.0% | |
| TGGCAAATCTTGGAGGATTA+AGG | + | chr2_4:12679377-12679396 | Msa0315940:five_prime_UTR | 40.0% | |
| GGCAAATCTTGGAGGATTAA+GGG | + | chr2_4:12679378-12679397 | Msa0315940:five_prime_UTR | 40.0% | |
| ! | GTCTTCGTCGGTTAAATCAA+GGG | - | chr2_4:12679428-12679447 | None:intergenic | 40.0% |
| !! | ATTCACCATGGCTTTTTCCT+GGG | + | chr2_4:12679474-12679493 | Msa0315940:exon | 40.0% |
| AAGAAGAAGAGTGATCCTGA+AGG | - | chr2_4:12679506-12679525 | None:intergenic | 40.0% | |
| CGACAATAACAGCAAGAAGA+AGG | - | chr2_4:12679531-12679550 | None:intergenic | 40.0% | |
| !! | GCTTTTTCTCTTACCCCTTT+TGG | + | chr2_4:12679581-12679600 | Msa0315940:intron | 40.0% |
| !! | TATGGGTTGATCGTGATCTT+GGG | + | chr2_4:12679735-12679754 | Msa0315940:CDS | 40.0% |
| TAGAAAAGGTGGTCCAAACT+AGG | + | chr2_4:12679966-12679985 | Msa0315940:intron | 40.0% | |
| GACCTGTAGATGCTTTAGTA+AGG | + | chr2_4:12680017-12680036 | Msa0315940:intron | 40.0% | |
| ! | CTCCTTACTAAAGCATCTAC+AGG | - | chr2_4:12680022-12680041 | None:intergenic | 40.0% |
| ! | AGTAAGGAGCGTATATCAGA+TGG | + | chr2_4:12680033-12680052 | Msa0315940:intron | 40.0% |
| TTAGATCACTAGAGAGGCAA+AGG | + | chr2_4:12680063-12680082 | Msa0315940:intron | 40.0% | |
| GAAGAGGAAATATTGTGTGG+CGG | + | chr2_4:12680298-12680317 | Msa0315940:intron | 40.0% | |
| ACTGTTCCGTAGCTAACATA+AGG | + | chr2_4:12680367-12680386 | Msa0315940:intron | 40.0% | |
| ! | GATTTTTGACGTGGTTAAGC+TGG | + | chr2_4:12680443-12680462 | Msa0315940:intron | 40.0% |
| CTTACAGTAAGAACTGAAGC+TGG | - | chr2_4:12680858-12680877 | None:intergenic | 40.0% | |
| GGGATCGGATATTTATTGAG+TGG | - | chr2_4:12681309-12681328 | None:intergenic | 40.0% | |
| ! | ATTGGTTCAGACCATTCACT+TGG | + | chr2_4:12681402-12681421 | Msa0315940:intron | 40.0% |
| AACATCACGTTGCTGAGATA+TGG | + | chr2_4:12681468-12681487 | Msa0315940:intron | 40.0% | |
| ATACCCTATGACGAGGATTA+GGG | - | chr2_4:12681554-12681573 | None:intergenic | 40.0% | |
| AATACCCTATGACGAGGATT+AGG | - | chr2_4:12681555-12681574 | None:intergenic | 40.0% | |
| ! | ATCCTCGTCATAGGGTATTA+TGG | + | chr2_4:12681556-12681575 | Msa0315940:intron | 40.0% |
| CTGTGAAAAGCCAGAAAACA+GGG | - | chr2_4:12681601-12681620 | None:intergenic | 40.0% | |
| TCTGTGAAAAGCCAGAAAAC+AGG | - | chr2_4:12681602-12681621 | None:intergenic | 40.0% | |
| ! | TGGCTTTTCACAGATTTCTC+TGG | + | chr2_4:12681608-12681627 | Msa0315940:intron | 40.0% |
| ! | GGCTTTTCACAGATTTCTCT+GGG | + | chr2_4:12681609-12681628 | Msa0315940:intron | 40.0% |
| TAAACGACAGCATGCTTTGA+TGG | - | chr2_4:12681854-12681873 | None:intergenic | 40.0% | |
| ATTACTTCTGCTGAAGCAGA+TGG | + | chr2_4:12681928-12681947 | Msa0315940:intron | 40.0% | |
| ! | ACTGTACTCTCTTTTCAGCT+TGG | + | chr2_4:12682333-12682352 | Msa0315940:intron | 40.0% |
| !!! | CTTGGTGGTGGTTATCTTTT+TGG | + | chr2_4:12682351-12682370 | Msa0315940:CDS | 40.0% |
| !! | TATCTTTTTGGGCTTCCAGT+TGG | + | chr2_4:12682363-12682382 | Msa0315940:CDS | 40.0% |
| AACAGTTGCACCTATAGAGT+CGG | - | chr2_4:12682397-12682416 | None:intergenic | 40.0% | |
| ! | CGGTAGAACAGTAAGTTTTC+AGG | + | chr2_4:12682440-12682459 | Msa0315940:intron | 40.0% |
| !! | GAAGACCGTTTGTTGTTTCT+AGG | + | chr2_4:12682640-12682659 | Msa0315940:CDS | 40.0% |
| !! | AATACGGAGATCTGGCTTTA+AGG | + | chr2_4:12682701-12682720 | Msa0315940:CDS | 40.0% |
| !! | GAGTTCTGAGTTTGGAAACA+AGG | - | chr2_4:12682813-12682832 | None:intergenic | 40.0% |
| !! | ACGGTTTAGAGTTCTGAGTT+TGG | - | chr2_4:12682821-12682840 | None:intergenic | 40.0% |
| AAAACTAAGCATAAGCCGCT+TGG | + | chr2_4:12683169-12683188 | Msa0315940:intron | 40.0% | |
| CATTTAGATCCCGTTAGTTG+TGG | - | chr2_4:12683492-12683511 | None:intergenic | 40.0% | |
| CACAACTAACGGGATCTAAA+TGG | + | chr2_4:12683490-12683509 | Msa0315940:intron | 40.0% | |
| ! | TAAAGGGCATGTAGGTATGT+TGG | + | chr2_4:12683582-12683601 | Msa0315940:intron | 40.0% |
| TAGTCATAAGGATCCTTTGG+GGG | + | chr2_4:12683831-12683850 | Msa0315940:intron | 40.0% | |
| TAATCCCCAAACCATATAGC+TGG | - | chr2_4:12683911-12683930 | None:intergenic | 40.0% | |
| ! | AGAGATTGTGTCTTTTCCCT+AGG | + | chr2_4:12683951-12683970 | Msa0315940:intron | 40.0% |
| TATCCCTATTACACTGCCAA+TGG | + | chr2_4:12683989-12684008 | Msa0315940:intron | 40.0% | |
| AAGCCATTGGCAGTGTAATA+GGG | - | chr2_4:12683995-12684014 | None:intergenic | 40.0% | |
| TAAGCCATTGGCAGTGTAAT+AGG | - | chr2_4:12683996-12684015 | None:intergenic | 40.0% | |
| TTCACTTGTGGAATACATGC+TGG | + | chr2_4:12684245-12684264 | Msa0315940:CDS | 40.0% | |
| GTATACCATCATTCCTAACC+AGG | - | chr2_4:12684274-12684293 | None:intergenic | 40.0% | |
| TTTCATGGATGTGCATGTCA+TGG | + | chr2_4:12684562-12684581 | Msa0315940:intron | 40.0% | |
| TAGTTCGGAGTTTGAACTCT+GGG | - | chr2_4:12684716-12684735 | None:intergenic | 40.0% | |
| ATAGTTCGGAGTTTGAACTC+TGG | - | chr2_4:12684717-12684736 | None:intergenic | 40.0% | |
| !! | AATAACGGATTGGCAATAGG+TGG | - | chr2_4:12684938-12684957 | None:intergenic | 40.0% |
| CTGTAAAAACATATGGACGG+TGG | - | chr2_4:12685235-12685254 | None:intergenic | 40.0% | |
| ATTATTGCAGCCAATAACGC+TGG | + | chr2_4:12685302-12685321 | Msa0315940:intron | 40.0% | |
| TATACAAGTGCCAGCGTTAT+TGG | - | chr2_4:12685315-12685334 | None:intergenic | 40.0% | |
| GATCTTTCTGACGTAACACA+TGG | + | chr2_4:12685354-12685373 | Msa0315940:CDS | 40.0% | |
| TTTCTGACGTAACACATGGT+TGG | + | chr2_4:12685358-12685377 | Msa0315940:CDS | 40.0% | |
| TTTCTTTCTCTTGCTGATGC+AGG | + | chr2_4:12685574-12685593 | Msa0315940:intron | 40.0% | |
| TAAAGTTGCCAAGTCTGCTT+TGG | + | chr2_4:12685771-12685790 | Msa0315940:CDS | 40.0% | |
| ! | AATATCTTCGTTTTCGGCCA+AGG | - | chr2_4:12685803-12685822 | None:intergenic | 40.0% |
| GCCGAAAACGAAGATATTGA+TGG | + | chr2_4:12685805-12685824 | Msa0315940:CDS | 40.0% | |
| CACAAATAAATAGGTGGAGC+TGG | - | chr2_4:12686013-12686032 | None:intergenic | 40.0% | |
| TGAAGAAGATCGGAAAGGGT+AGG | - | chr2_4:12679208-12679227 | None:intergenic | 45.0% | |
| TCAAACCTGGCAAATCTTGG+AGG | + | chr2_4:12679370-12679389 | Msa0315940:five_prime_UTR | 45.0% | |
| ! | TCGTCGGTTAAATCAAGGGA+AGG | - | chr2_4:12679424-12679443 | None:intergenic | 45.0% |
| ! | CGTCTTCGTCGGTTAAATCA+AGG | - | chr2_4:12679429-12679448 | None:intergenic | 45.0% |
| !! | GATTCACCATGGCTTTTTCC+TGG | + | chr2_4:12679473-12679492 | Msa0315940:exon | 45.0% |
| !! | CTATGGGTTGATCGTGATCT+TGG | + | chr2_4:12679734-12679753 | Msa0315940:CDS | 45.0% |
| !! | ATGGGTTGATCGTGATCTTG+GGG | + | chr2_4:12679736-12679755 | Msa0315940:CDS | 45.0% |
| TTGCGAAGACTAGATGGGAT+AGG | + | chr2_4:12679901-12679920 | Msa0315940:intron | 45.0% | |
| ! | AAGGAGCGTATATCAGATGG+AGG | + | chr2_4:12680036-12680055 | Msa0315940:intron | 45.0% |
| AGAGAGGCAAAGGAAGACAT+AGG | + | chr2_4:12680073-12680092 | Msa0315940:intron | 45.0% | |
| CAAAGCAACATTGTAGGCAG+CGG | - | chr2_4:12680973-12680992 | None:intergenic | 45.0% | |
| ACCATTCACTTGGAACCTCT+AGG | + | chr2_4:12681412-12681431 | Msa0315940:intron | 45.0% | |
| TTAGGGACAGGTAAGAATGG+TGG | - | chr2_4:12681537-12681556 | None:intergenic | 45.0% | |
| GGATTAGGGACAGGTAAGAA+TGG | - | chr2_4:12681540-12681559 | None:intergenic | 45.0% | |
| TGTCCCTAATCCTCGTCATA+GGG | + | chr2_4:12681548-12681567 | Msa0315940:intron | 45.0% | |
| GTCCATAATACCCTATGACG+AGG | - | chr2_4:12681561-12681580 | None:intergenic | 45.0% | |
| ! | TTATCCCTGTCCCTGTTTTC+TGG | + | chr2_4:12681588-12681607 | Msa0315940:intron | 45.0% |
| AAAGCCAGAAAACAGGGACA+GGG | - | chr2_4:12681595-12681614 | None:intergenic | 45.0% | |
| AAAAGCCAGAAAACAGGGAC+AGG | - | chr2_4:12681596-12681615 | None:intergenic | 45.0% | |
| ! | GTACTCTCTTTTCAGCTTGG+TGG | + | chr2_4:12682336-12682355 | Msa0315940:intron | 45.0% |
| GACTCTATAGGTGCAACTGT+TGG | + | chr2_4:12682396-12682415 | Msa0315940:CDS | 45.0% | |
| GCTATTCAGCAGCAAGTAGT+GGG | - | chr2_4:12682508-12682527 | None:intergenic | 45.0% | |
| AGCTATTCAGCAGCAAGTAG+TGG | - | chr2_4:12682509-12682528 | None:intergenic | 45.0% | |
| GCAATTGCAATACGGAGATC+TGG | + | chr2_4:12682693-12682712 | Msa0315940:CDS | 45.0% | |
| ! | TTTGTCACAAGCGGGTTCTT+AGG | - | chr2_4:12683203-12683222 | None:intergenic | 45.0% |
| GGGACACCACAGATAATTTC+TGG | - | chr2_4:12683633-12683652 | None:intergenic | 45.0% | |
| TATCTGTGGTGTCCCTTCTT+TGG | + | chr2_4:12683638-12683657 | Msa0315940:intron | 45.0% | |
| TCTACAGCACACCAGAATGA+GGG | - | chr2_4:12683705-12683724 | None:intergenic | 45.0% | |
| ACGCTGGCACTTGTATATGT+TGG | + | chr2_4:12685318-12685337 | Msa0315940:CDS | 45.0% | |
| ! | GGCTTTATCCAAAGCAGACT+TGG | - | chr2_4:12685782-12685801 | None:intergenic | 45.0% |
| ! | GTCTGCTTTGGATAAAGCCT+TGG | + | chr2_4:12685783-12685802 | Msa0315940:CDS | 45.0% |
| ! | AACAATTGGTAACTCCGGTG+AGG | - | chr2_4:12685839-12685858 | None:intergenic | 45.0% |
| ! | TCGGCAACAATTGGTAACTC+CGG | - | chr2_4:12685844-12685863 | None:intergenic | 45.0% |
| !! | GTTCAGATCTGATGGTGGTT+CGG | - | chr2_4:12685863-12685882 | None:intergenic | 45.0% |
| ! | AGTGGTTGGTTCAGATCTGA+TGG | - | chr2_4:12685871-12685890 | None:intergenic | 45.0% |
| !!! | GATTTTTTTATTAAAAAAAA+AGG | - | chr2_4:12683431-12683450 | None:intergenic | 5.0% |
| !!! | AAATTATACTATATTTTATT+TGG | + | chr2_4:12683735-12683754 | Msa0315940:intron | 5.0% |
| ACGACACTCTTCGTCTTCGT+CGG | - | chr2_4:12679440-12679459 | None:intergenic | 50.0% | |
| !! | AAGACGAAGAGTGTCGTCCT+TGG | + | chr2_4:12679443-12679462 | Msa0315940:five_prime_UTR | 50.0% |
| ATGGTGAATCTTCGACGCCA+AGG | - | chr2_4:12679463-12679482 | None:intergenic | 50.0% | |
| ! | TTGGCGTCGAAGATTCACCA+TGG | + | chr2_4:12679462-12679481 | Msa0315940:exon | 50.0% |
| AGAAGCCCAGGAAAAAGCCA+TGG | - | chr2_4:12679482-12679501 | None:intergenic | 50.0% | |
| TTGATCGTGATCTTGGGGCA+TGG | + | chr2_4:12679741-12679760 | Msa0315940:CDS | 50.0% | |
| TGATCGTGATCTTGGGGCAT+GGG | + | chr2_4:12679742-12679761 | Msa0315940:CDS | 50.0% | |
| AGGTGGTCCAAACTAGGCTT+AGG | + | chr2_4:12679972-12679991 | Msa0315940:intron | 50.0% | |
| ACTAAGTGGGGTCGGATACA+CGG | - | chr2_4:12680178-12680197 | None:intergenic | 50.0% | |
| TGTATCCGACCCCACTTAGT+GGG | + | chr2_4:12680178-12680197 | Msa0315940:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr2_4:12680186-12680205 | None:intergenic | 50.0% | |
| ! | AGGCCTTATCCCACTAAGTG+GGG | - | chr2_4:12680190-12680209 | None:intergenic | 50.0% |
| ! | CAGGCCTTATCCCACTAAGT+GGG | - | chr2_4:12680191-12680210 | None:intergenic | 50.0% |
| ! | TCAGGCCTTATCCCACTAAG+TGG | - | chr2_4:12680192-12680211 | None:intergenic | 50.0% |
| TTGACGTGGTTAAGCTGGCT+AGG | + | chr2_4:12680448-12680467 | Msa0315940:intron | 50.0% | |
| TGGTTAAGCTGGCTAGGTGA+AGG | + | chr2_4:12680454-12680473 | Msa0315940:intron | 50.0% | |
| GGAACTGCCAAGACAGTCAA+AGG | - | chr2_4:12680837-12680856 | None:intergenic | 50.0% | |
| ! | CGCTGCCTACAATGTTGCTT+TGG | + | chr2_4:12680971-12680990 | Msa0315940:intron | 50.0% |
| GCCTAGAGGTTCCAAGTGAA+TGG | - | chr2_4:12681416-12681435 | None:intergenic | 50.0% | |
| TGAGATATGGCACCCTTCCA+AGG | + | chr2_4:12681481-12681500 | Msa0315940:intron | 50.0% | |
| TAAGAATGGTGGCAGAGAGC+AGG | - | chr2_4:12681526-12681545 | None:intergenic | 50.0% | |
| CTATGACGAGGATTAGGGAC+AGG | - | chr2_4:12681549-12681568 | None:intergenic | 50.0% | |
| CTGTCCCTAATCCTCGTCAT+AGG | + | chr2_4:12681547-12681566 | Msa0315940:intron | 50.0% | |
| !! | CTCTCTTTTCAGCTTGGTGG+TGG | + | chr2_4:12682339-12682358 | Msa0315940:intron | 50.0% |
| !! | GGCTTTGTTGCCGACTCTAT+AGG | + | chr2_4:12682384-12682403 | Msa0315940:CDS | 50.0% |
| ATAGGTGCAACTGTTGGTGC+AGG | + | chr2_4:12682402-12682421 | Msa0315940:CDS | 50.0% | |
| GCAGGAGCTGCATTTCTTCT+CGG | + | chr2_4:12682420-12682439 | Msa0315940:CDS | 50.0% | |
| ACTAAGCATAAGCCGCTTGG+TGG | + | chr2_4:12683172-12683191 | Msa0315940:intron | 50.0% | |
| TCTTAGGTGACACCACCAAG+CGG | - | chr2_4:12683187-12683206 | None:intergenic | 50.0% | |
| !! | ATGGTGCTGCCACCAAAGAA+GGG | - | chr2_4:12683653-12683672 | None:intergenic | 50.0% |
| GTCTACAGCACACCAGAATG+AGG | - | chr2_4:12683706-12683725 | None:intergenic | 50.0% | |
| GGTGACTCCTGTTTCACTTG+TGG | + | chr2_4:12684233-12684252 | Msa0315940:CDS | 50.0% | |
| !! | TGGAATACATGCTGGCTTCC+TGG | + | chr2_4:12684253-12684272 | Msa0315940:CDS | 50.0% |
| !! | TACATGCTGGCTTCCTGGTT+AGG | + | chr2_4:12684258-12684277 | Msa0315940:CDS | 50.0% |
| GGCTTCCTGGTTAGGAATGA+TGG | + | chr2_4:12684266-12684285 | Msa0315940:CDS | 50.0% | |
| ACGAATTCTCGAAGTCGCGT+TGG | + | chr2_4:12685382-12685401 | Msa0315940:CDS | 50.0% | |
| CGAATTCTCGAAGTCGCGTT+GGG | + | chr2_4:12685383-12685402 | Msa0315940:CDS | 50.0% | |
| TGATGGGGTTACATCCTCAC+CGG | + | chr2_4:12685822-12685841 | Msa0315940:CDS | 50.0% | |
| ! | GATGGTGGTTCGGCAACAAT+TGG | - | chr2_4:12685853-12685872 | None:intergenic | 50.0% |
| ! | GGTTGGTTCAGATCTGATGG+TGG | - | chr2_4:12685868-12685887 | None:intergenic | 50.0% |
| TTTCCTGGGCTTCTGCCTTC+AGG | + | chr2_4:12679488-12679507 | Msa0315940:CDS | 55.0% | |
| GATCGTGATCTTGGGGCATG+GGG | + | chr2_4:12679743-12679762 | Msa0315940:CDS | 55.0% | |
| ATCGTGATCTTGGGGCATGG+GGG | + | chr2_4:12679744-12679763 | Msa0315940:CDS | 55.0% | |
| GTGTATCCGACCCCACTTAG+TGG | + | chr2_4:12680177-12680196 | Msa0315940:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr2_4:12680184-12680203 | Msa0315940:intron | 55.0% | |
| GGCGGCGTAACTTACTAGCT+TGG | + | chr2_4:12680316-12680335 | Msa0315940:intron | 55.0% | |
| CATTACGAGAGGCAGCCTAG+AGG | - | chr2_4:12681430-12681449 | None:intergenic | 55.0% | |
| TATGGCACCCTTCCAAGGTG+AGG | + | chr2_4:12681486-12681505 | Msa0315940:intron | 55.0% | |
| ATGGCACCCTTCCAAGGTGA+GGG | + | chr2_4:12681487-12681506 | Msa0315940:intron | 55.0% | |
| ACCCTTCCAAGGTGAGGGTT+CGG | + | chr2_4:12681492-12681511 | Msa0315940:intron | 55.0% | |
| TCCGAACCCTCACCTTGGAA+GGG | - | chr2_4:12681496-12681515 | None:intergenic | 55.0% | |
| AGTACTCCGAACCCTCACCT+TGG | - | chr2_4:12681501-12681520 | None:intergenic | 55.0% | |
| GAGTCGGCAACAAAGCCAAC+TGG | - | chr2_4:12682381-12682400 | None:intergenic | 55.0% | |
| CTGTGGTGTCCCTTCTTTGG+TGG | + | chr2_4:12683641-12683660 | Msa0315940:intron | 55.0% | |
| !! | CATGGTGCTGCCACCAAAGA+AGG | - | chr2_4:12683654-12683673 | None:intergenic | 55.0% |
| GATCGTGCATGCCCTCATTC+TGG | + | chr2_4:12683691-12683710 | Msa0315940:intron | 55.0% | |
| GATCCTGAAGGCAGAAGCCC+AGG | - | chr2_4:12679494-12679513 | None:intergenic | 60.0% | |
| CTCCGAACCCTCACCTTGGA+AGG | - | chr2_4:12681497-12681516 | None:intergenic | 60.0% | |
| CTGCTGAAGCAGATGGTCGC+TGG | + | chr2_4:12681935-12681954 | Msa0315940:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 12679149 | 12686180 | 12679149 | ID=Msa0315940;Name=Msa0315940 |
| chr2_4 | mRNA | 12679149 | 12686180 | 12679149 | ID=Msa0315940-mRNA-1;Parent=Msa0315940;Name=Msa0315940-mRNA-1;_AED=0.15;_eAED=0.15;_QI=332|1|1|1|1|1|9|247|274 |
| chr2_4 | exon | 12679149 | 12679576 | 12679149 | ID=Msa0315940-mRNA-1:exon:4844;Parent=Msa0315940-mRNA-1 |
| chr2_4 | exon | 12679716 | 12679777 | 12679716 | ID=Msa0315940-mRNA-1:exon:4845;Parent=Msa0315940-mRNA-1 |
| chr2_4 | exon | 12680818 | 12680872 | 12680818 | ID=Msa0315940-mRNA-1:exon:4846;Parent=Msa0315940-mRNA-1 |
| chr2_4 | exon | 12682351 | 12682449 | 12682351 | ID=Msa0315940-mRNA-1:exon:4847;Parent=Msa0315940-mRNA-1 |
| chr2_4 | exon | 12682636 | 12682722 | 12682636 | ID=Msa0315940-mRNA-1:exon:4848;Parent=Msa0315940-mRNA-1 |
| chr2_4 | exon | 12684171 | 12684287 | 12684171 | ID=Msa0315940-mRNA-1:exon:4849;Parent=Msa0315940-mRNA-1 |
| chr2_4 | exon | 12685312 | 12685404 | 12685312 | ID=Msa0315940-mRNA-1:exon:4850;Parent=Msa0315940-mRNA-1 |
| chr2_4 | exon | 12685596 | 12685626 | 12685596 | ID=Msa0315940-mRNA-1:exon:4851;Parent=Msa0315940-mRNA-1 |
| chr2_4 | exon | 12685749 | 12686180 | 12685749 | ID=Msa0315940-mRNA-1:exon:4852;Parent=Msa0315940-mRNA-1 |
| chr2_4 | five_prime_UTR | 12679149 | 12679480 | 12679149 | ID=Msa0315940-mRNA-1:five_prime_utr;Parent=Msa0315940-mRNA-1 |
| chr2_4 | CDS | 12679481 | 12679576 | 12679481 | ID=Msa0315940-mRNA-1:cds;Parent=Msa0315940-mRNA-1 |
| chr2_4 | CDS | 12679716 | 12679777 | 12679716 | ID=Msa0315940-mRNA-1:cds;Parent=Msa0315940-mRNA-1 |
| chr2_4 | CDS | 12680818 | 12680872 | 12680818 | ID=Msa0315940-mRNA-1:cds;Parent=Msa0315940-mRNA-1 |
| chr2_4 | CDS | 12682351 | 12682449 | 12682351 | ID=Msa0315940-mRNA-1:cds;Parent=Msa0315940-mRNA-1 |
| chr2_4 | CDS | 12682636 | 12682722 | 12682636 | ID=Msa0315940-mRNA-1:cds;Parent=Msa0315940-mRNA-1 |
| chr2_4 | CDS | 12684171 | 12684287 | 12684171 | ID=Msa0315940-mRNA-1:cds;Parent=Msa0315940-mRNA-1 |
| chr2_4 | CDS | 12685312 | 12685404 | 12685312 | ID=Msa0315940-mRNA-1:cds;Parent=Msa0315940-mRNA-1 |
| chr2_4 | CDS | 12685596 | 12685626 | 12685596 | ID=Msa0315940-mRNA-1:cds;Parent=Msa0315940-mRNA-1 |
| chr2_4 | CDS | 12685749 | 12685933 | 12685749 | ID=Msa0315940-mRNA-1:cds;Parent=Msa0315940-mRNA-1 |
| chr2_4 | three_prime_UTR | 12685934 | 12686180 | 12685934 | ID=Msa0315940-mRNA-1:three_prime_utr;Parent=Msa0315940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
