Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210940 | A0A072V0C0 | 84.302 | 172 | 25 | 1 | 1 | 170 | 1 | 172 | 2.45e-83 | 253 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0610840 | Msa1210940 | -0.820227 | 7.668791e-53 | -8.615850e-47 |
| Msa0748970 | Msa1210940 | 0.802838 | 4.640016e-49 | -8.615850e-47 |
| Msa0802830 | Msa1210940 | 0.823272 | 1.514636e-53 | -8.615850e-47 |
| Msa0820850 | Msa1210940 | 0.836561 | 8.704518e-57 | -8.615850e-47 |
| Msa0388950 | Msa1210940 | 0.809000 | 2.349320e-50 | -8.615850e-47 |
| Msa0434000 | Msa1210940 | 0.815097 | 1.100444e-51 | -8.615850e-47 |
| Msa1014540 | Msa1210940 | 0.802889 | 4.528687e-49 | -8.615850e-47 |
| Msa0321310 | Msa1210940 | 0.804629 | 1.970539e-49 | -8.615850e-47 |
| Msa0342750 | Msa1210940 | 0.811805 | 5.826632e-51 | -8.615850e-47 |
| Msa1174040 | Msa1210940 | 0.800962 | 1.126718e-48 | -8.615850e-47 |
| Msa1210220 | Msa1210940 | 0.995756 | 1.489564e-219 | -8.615850e-47 |
| Msa1210940 | Msa1282580 | -0.802953 | 4.393359e-49 | -8.615850e-47 |
| Msa1210940 | Msa1299120 | 0.811880 | 5.610900e-51 | -8.615850e-47 |
| Msa1210940 | Msa1313140 | 0.806834 | 6.785773e-50 | -8.615850e-47 |
| Msa1210940 | Msa1319800 | 0.814714 | 1.338346e-51 | -8.615850e-47 |
| Msa1210940 | Msa1423870 | 0.800894 | 1.163500e-48 | -8.615850e-47 |
| Msa1210940 | Msa1458750 | 0.811996 | 5.294940e-51 | -8.615850e-47 |
| Msa0529040 | Msa1210940 | 0.814547 | 1.457590e-51 | -8.615850e-47 |
| Msa0575010 | Msa1210940 | 0.804718 | 1.888389e-49 | -8.615850e-47 |
| Msa0849030 | Msa1210940 | 0.818853 | 1.578328e-52 | -8.615850e-47 |
| Msa0861130 | Msa1210940 | 0.834795 | 2.437129e-56 | -8.615850e-47 |
| Msa0876580 | Msa1210940 | 0.817367 | 3.421905e-52 | -8.615850e-47 |
| Msa0916250 | Msa1210940 | 0.806239 | 9.060088e-50 | -8.615850e-47 |
| Msa0932830 | Msa1210940 | 0.810950 | 8.931156e-51 | -8.615850e-47 |
| Msa0966750 | Msa1210940 | 0.812436 | 4.243920e-51 | -8.615850e-47 |
| Msa0976670 | Msa1210940 | 0.807819 | 4.195023e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1210940 | MtrunA17_Chr4g0055101 | 82.941 | 170 | 27 | 1 | 3 | 170 | 8 | 177 | 3.59e-83 | 244 |
| Msa1210940 | MtrunA17_Chr4g0059481 | 56.019 | 216 | 36 | 6 | 14 | 171 | 25 | 239 | 8.49e-62 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 40 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCATTGTCGCAAGAGATTT+TGG | 0.265753 | 8_1:-70283380 | None:intergenic |
| GATGAGCGGGAGGAAGAATT+TGG | 0.312405 | 8_1:+70282650 | Msa1210940:CDS |
| AAGCCATAATCTGCTGATTT+CGG | 0.337263 | 8_1:-70282209 | None:intergenic |
| GAACCGAAATCAGCAGATTA+TGG | 0.378368 | 8_1:+70282206 | Msa1210940:CDS |
| TAGAAATAGTGGAAATCATC+AGG | 0.380708 | 8_1:-70282508 | None:intergenic |
| TTTCATGAGCTCTGATAAAC+TGG | 0.396861 | 8_1:+70282178 | Msa1210940:CDS |
| TTGATTCATGCAGGAGGAAA+AGG | 0.416587 | 8_1:+70283259 | Msa1210940:intron |
| AAATCTCTTGCGACAATGAC+AGG | 0.424239 | 8_1:+70283383 | Msa1210940:CDS |
| ACGACATGGACATTTCAAAC+TGG | 0.436567 | 8_1:+70282775 | Msa1210940:CDS |
| TGCTCAAACGACGTTTCCCC+AGG | 0.439031 | 8_1:+70283126 | Msa1210940:CDS |
| GCATGGTCTCCTCGATTGCT+TGG | 0.439560 | 8_1:-70283106 | None:intergenic |
| GATGATTTCCACTATTTCTA+CGG | 0.471616 | 8_1:+70282511 | Msa1210940:CDS |
| TAATACTTCCGTAGAAATAG+TGG | 0.477563 | 8_1:-70282519 | None:intergenic |
| ATCCGAGGACATTTCAACCT+TGG | 0.485344 | 8_1:+70283288 | Msa1210940:CDS |
| CGAGGACATTTCAACCTTGG+AGG | 0.511066 | 8_1:+70283291 | Msa1210940:CDS |
| TGGTCTCCTCGATTGCTTGG+AGG | 0.522368 | 8_1:-70283103 | None:intergenic |
| CTCCAAGGTTGAAATGTCCT+CGG | 0.526128 | 8_1:-70283290 | None:intergenic |
| AGAGGACAGCTATGATGAGC+GGG | 0.527843 | 8_1:+70282637 | Msa1210940:CDS |
| GCGCTTCTGATGTGCAGAAG+TGG | 0.545724 | 8_1:+70283320 | Msa1210940:CDS |
| TTGTATTTATCGGCTTTGGT+TGG | 0.554582 | 8_1:-70283058 | None:intergenic |
| AGCTAAAACAAAAGAAGAAG+AGG | 0.557716 | 8_1:+70282619 | Msa1210940:intron |
| ATAAATACAAAACTATCAGA+TGG | 0.567313 | 8_1:+70283071 | Msa1210940:CDS |
| GGGGAAACGTCGTTTGAGCA+TGG | 0.584626 | 8_1:-70283123 | None:intergenic |
| AATCTCTTGCGACAATGACA+GGG | 0.594090 | 8_1:+70283384 | Msa1210940:CDS |
| GAGCTCTGATAAACTGGCGG+AGG | 0.595057 | 8_1:+70282184 | Msa1210940:CDS |
| ATTTCAAACTGGAAAATCGA+TGG | 0.595540 | 8_1:+70282786 | Msa1210940:CDS |
| TGACGCAGAAGAAGAATCTG+AGG | 0.596338 | 8_1:+70282124 | Msa1210940:CDS |
| GATGCAAATGATGATTCTGA+AGG | 0.605567 | 8_1:+70283352 | Msa1210940:CDS |
| GCTCAAACGACGTTTCCCCA+GGG | 0.608741 | 8_1:+70283127 | Msa1210940:CDS |
| AGAAATAGTGGAAATCATCA+GGG | 0.608858 | 8_1:-70282507 | None:intergenic |
| AGAAGCGCTCAGCTCCTCCA+AGG | 0.610612 | 8_1:-70283305 | None:intergenic |
| AGGAAAAGGCAAAGAATCCG+AGG | 0.634732 | 8_1:+70283273 | Msa1210940:CDS |
| AAGAGGACAGCTATGATGAG+CGG | 0.651595 | 8_1:+70282636 | Msa1210940:CDS |
| TTTCATCCTCCAAGCAATCG+AGG | 0.655223 | 8_1:+70283097 | Msa1210940:CDS |
| ATCTCTTGCGACAATGACAG+GGG | 0.658631 | 8_1:+70283385 | Msa1210940:CDS |
| CTCAAACGACGTTTCCCCAG+GGG | 0.662182 | 8_1:+70283128 | Msa1210940:CDS |
| TGAAGATGAAATTGACGACA+TGG | 0.666872 | 8_1:+70282761 | Msa1210940:CDS |
| CATGAGCTCTGATAAACTGG+CGG | 0.669381 | 8_1:+70282181 | Msa1210940:CDS |
| GAAATAGTGGAAATCATCAG+GGG | 0.685394 | 8_1:-70282506 | None:intergenic |
| AAAGAAGAATAATACCCCTG+GGG | 0.748744 | 8_1:-70283142 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATTATTATTATTATTGA+TGG | + | chr8_1:70282592-70282611 | Msa1210940:intron | 10.0% |
| !!! | AATTTGAATTTTATTTGAAA+CGG | + | chr8_1:70282883-70282902 | Msa1210940:intron | 10.0% |
| !! | GTAATTATTATTATTATTGA+TGG | + | chr8_1:70282592-70282611 | Msa1210940:intron | 10.0% |
| !!! | AATTTGAATTTTATTTGAAA+CGG | + | chr8_1:70282883-70282902 | Msa1210940:intron | 10.0% |
| !!! | TTATTGTTTTTTCTGATTTA+AGG | + | chr8_1:70282675-70282694 | Msa1210940:intron | 15.0% |
| !!! | TTATTGTTTTTTCTGATTTA+AGG | + | chr8_1:70282675-70282694 | Msa1210940:intron | 15.0% |
| !! | TGTTAATGTTTATAATGTGT+TGG | + | chr8_1:70282569-70282588 | Msa1210940:intron | 20.0% |
| !! | GTTAATGTTTATAATGTGTT+GGG | + | chr8_1:70282570-70282589 | Msa1210940:intron | 20.0% |
| !! | ATTAAGCAAATGAAATCAAT+CGG | - | chr8_1:70282949-70282968 | None:intergenic | 20.0% |
| !!! | TCTGATAGTTTTGTATTTAT+CGG | - | chr8_1:70283071-70283090 | None:intergenic | 20.0% |
| !! | ATAAATACAAAACTATCAGA+TGG | + | chr8_1:70283071-70283090 | Msa1210940:CDS | 20.0% |
| !! | TGTTAATGTTTATAATGTGT+TGG | + | chr8_1:70282569-70282588 | Msa1210940:intron | 20.0% |
| !! | GTTAATGTTTATAATGTGTT+GGG | + | chr8_1:70282570-70282589 | Msa1210940:intron | 20.0% |
| !! | ATTAAGCAAATGAAATCAAT+CGG | - | chr8_1:70282949-70282968 | None:intergenic | 20.0% |
| !!! | TCTGATAGTTTTGTATTTAT+CGG | - | chr8_1:70283071-70283090 | None:intergenic | 20.0% |
| !! | ATAAATACAAAACTATCAGA+TGG | + | chr8_1:70283071-70283090 | Msa1210940:CDS | 20.0% |
| ! | ATTATTAGAAGATGAATTCG+AGG | + | chr8_1:70282329-70282348 | Msa1210940:intron | 25.0% |
| ! | AATAATTATTGATGCAGATG+AGG | + | chr8_1:70283034-70283053 | Msa1210940:intron | 25.0% |
| ! | ATTATTAGAAGATGAATTCG+AGG | + | chr8_1:70282329-70282348 | Msa1210940:intron | 25.0% |
| ! | AATAATTATTGATGCAGATG+AGG | + | chr8_1:70283034-70283053 | Msa1210940:intron | 25.0% |
| ! | ATTTTTGAATGCGTTGTTGT+TGG | + | chr8_1:70282399-70282418 | Msa1210940:intron | 30.0% |
| !! | TTGATTGATGATGCAGTAAA+AGG | + | chr8_1:70282436-70282455 | Msa1210940:intron | 30.0% |
| ! | AGAAATAGTGGAAATCATCA+GGG | - | chr8_1:70282510-70282529 | None:intergenic | 30.0% |
| ! | TAGAAATAGTGGAAATCATC+AGG | - | chr8_1:70282511-70282530 | None:intergenic | 30.0% |
| !! | GATGATTTCCACTATTTCTA+CGG | + | chr8_1:70282511-70282530 | Msa1210940:CDS | 30.0% |
| TAATACTTCCGTAGAAATAG+TGG | - | chr8_1:70282522-70282541 | None:intergenic | 30.0% | |
| AGCTAAAACAAAAGAAGAAG+AGG | + | chr8_1:70282619-70282638 | Msa1210940:intron | 30.0% | |
| ATTTCAAACTGGAAAATCGA+TGG | + | chr8_1:70282786-70282805 | Msa1210940:CDS | 30.0% | |
| ! | GAAACTCAAAGAGAGATTTT+CGG | + | chr8_1:70282905-70282924 | Msa1210940:intron | 30.0% |
| !!! | AGTTTTGTATTTATCGGCTT+TGG | - | chr8_1:70283065-70283084 | None:intergenic | 30.0% |
| ! | ATTTTTGAATGCGTTGTTGT+TGG | + | chr8_1:70282399-70282418 | Msa1210940:intron | 30.0% |
| !! | TTGATTGATGATGCAGTAAA+AGG | + | chr8_1:70282436-70282455 | Msa1210940:intron | 30.0% |
| ! | AGAAATAGTGGAAATCATCA+GGG | - | chr8_1:70282510-70282529 | None:intergenic | 30.0% |
| ! | TAGAAATAGTGGAAATCATC+AGG | - | chr8_1:70282511-70282530 | None:intergenic | 30.0% |
| !! | GATGATTTCCACTATTTCTA+CGG | + | chr8_1:70282511-70282530 | Msa1210940:CDS | 30.0% |
| TAATACTTCCGTAGAAATAG+TGG | - | chr8_1:70282522-70282541 | None:intergenic | 30.0% | |
| AGCTAAAACAAAAGAAGAAG+AGG | + | chr8_1:70282619-70282638 | Msa1210940:intron | 30.0% | |
| ATTTCAAACTGGAAAATCGA+TGG | + | chr8_1:70282786-70282805 | Msa1210940:CDS | 30.0% | |
| ! | GAAACTCAAAGAGAGATTTT+CGG | + | chr8_1:70282905-70282924 | Msa1210940:intron | 30.0% |
| !!! | AGTTTTGTATTTATCGGCTT+TGG | - | chr8_1:70283065-70283084 | None:intergenic | 30.0% |
| ! | TTTCATGAGCTCTGATAAAC+TGG | + | chr8_1:70282178-70282197 | Msa1210940:CDS | 35.0% |
| !! | AAGCCATAATCTGCTGATTT+CGG | - | chr8_1:70282212-70282231 | None:intergenic | 35.0% |
| AGTATTACTACTCTTCTTGC+AGG | + | chr8_1:70282242-70282261 | Msa1210940:intron | 35.0% | |
| ! | TCACTAGTTTAGAATGCGTT+GGG | + | chr8_1:70282289-70282308 | Msa1210940:intron | 35.0% |
| ! | ATCAGGGGTCATGTATTTTA+TGG | - | chr8_1:70282494-70282513 | None:intergenic | 35.0% |
| ! | GAAATAGTGGAAATCATCAG+GGG | - | chr8_1:70282509-70282528 | None:intergenic | 35.0% |
| ! | TCATGTGTTTAGAATGTGTC+TGG | + | chr8_1:70282706-70282725 | Msa1210940:intron | 35.0% |
| TGAAGATGAAATTGACGACA+TGG | + | chr8_1:70282761-70282780 | Msa1210940:CDS | 35.0% | |
| !! | TTGTATTTATCGGCTTTGGT+TGG | - | chr8_1:70283061-70283080 | None:intergenic | 35.0% |
| AAAGAAGAATAATACCCCTG+GGG | - | chr8_1:70283145-70283164 | None:intergenic | 35.0% | |
| GAAAGAAGAATAATACCCCT+GGG | - | chr8_1:70283146-70283165 | None:intergenic | 35.0% | |
| AGAAAGAAGAATAATACCCC+TGG | - | chr8_1:70283147-70283166 | None:intergenic | 35.0% | |
| !! | TGATTATTGATTCATGCAGG+AGG | + | chr8_1:70283253-70283272 | Msa1210940:intron | 35.0% |
| GATGCAAATGATGATTCTGA+AGG | + | chr8_1:70283352-70283371 | Msa1210940:CDS | 35.0% | |
| ! | TTTCATGAGCTCTGATAAAC+TGG | + | chr8_1:70282178-70282197 | Msa1210940:CDS | 35.0% |
| !! | AAGCCATAATCTGCTGATTT+CGG | - | chr8_1:70282212-70282231 | None:intergenic | 35.0% |
| AGTATTACTACTCTTCTTGC+AGG | + | chr8_1:70282242-70282261 | Msa1210940:intron | 35.0% | |
| ! | TCACTAGTTTAGAATGCGTT+GGG | + | chr8_1:70282289-70282308 | Msa1210940:intron | 35.0% |
| ! | ATCAGGGGTCATGTATTTTA+TGG | - | chr8_1:70282494-70282513 | None:intergenic | 35.0% |
| ! | GAAATAGTGGAAATCATCAG+GGG | - | chr8_1:70282509-70282528 | None:intergenic | 35.0% |
| ! | TCATGTGTTTAGAATGTGTC+TGG | + | chr8_1:70282706-70282725 | Msa1210940:intron | 35.0% |
| TGAAGATGAAATTGACGACA+TGG | + | chr8_1:70282761-70282780 | Msa1210940:CDS | 35.0% | |
| !! | TTGTATTTATCGGCTTTGGT+TGG | - | chr8_1:70283061-70283080 | None:intergenic | 35.0% |
| AAAGAAGAATAATACCCCTG+GGG | - | chr8_1:70283145-70283164 | None:intergenic | 35.0% | |
| GAAAGAAGAATAATACCCCT+GGG | - | chr8_1:70283146-70283165 | None:intergenic | 35.0% | |
| AGAAAGAAGAATAATACCCC+TGG | - | chr8_1:70283147-70283166 | None:intergenic | 35.0% | |
| !! | TGATTATTGATTCATGCAGG+AGG | + | chr8_1:70283253-70283272 | Msa1210940:intron | 35.0% |
| GATGCAAATGATGATTCTGA+AGG | + | chr8_1:70283352-70283371 | Msa1210940:CDS | 35.0% | |
| GAACCGAAATCAGCAGATTA+TGG | + | chr8_1:70282206-70282225 | Msa1210940:CDS | 40.0% | |
| ! | GTCACTAGTTTAGAATGCGT+TGG | + | chr8_1:70282288-70282307 | Msa1210940:intron | 40.0% |
| ACGACATGGACATTTCAAAC+TGG | + | chr8_1:70282775-70282794 | Msa1210940:CDS | 40.0% | |
| !! | GCGTGATTATTGATTCATGC+AGG | + | chr8_1:70283250-70283269 | Msa1210940:intron | 40.0% |
| TTGATTCATGCAGGAGGAAA+AGG | + | chr8_1:70283259-70283278 | Msa1210940:intron | 40.0% | |
| ! | GTCATTGTCGCAAGAGATTT+TGG | - | chr8_1:70283383-70283402 | None:intergenic | 40.0% |
| AAATCTCTTGCGACAATGAC+AGG | + | chr8_1:70283383-70283402 | Msa1210940:CDS | 40.0% | |
| AATCTCTTGCGACAATGACA+GGG | + | chr8_1:70283384-70283403 | Msa1210940:CDS | 40.0% | |
| GAACCGAAATCAGCAGATTA+TGG | + | chr8_1:70282206-70282225 | Msa1210940:CDS | 40.0% | |
| ! | GTCACTAGTTTAGAATGCGT+TGG | + | chr8_1:70282288-70282307 | Msa1210940:intron | 40.0% |
| ACGACATGGACATTTCAAAC+TGG | + | chr8_1:70282775-70282794 | Msa1210940:CDS | 40.0% | |
| !! | GCGTGATTATTGATTCATGC+AGG | + | chr8_1:70283250-70283269 | Msa1210940:intron | 40.0% |
| TTGATTCATGCAGGAGGAAA+AGG | + | chr8_1:70283259-70283278 | Msa1210940:intron | 40.0% | |
| ! | GTCATTGTCGCAAGAGATTT+TGG | - | chr8_1:70283383-70283402 | None:intergenic | 40.0% |
| AAATCTCTTGCGACAATGAC+AGG | + | chr8_1:70283383-70283402 | Msa1210940:CDS | 40.0% | |
| AATCTCTTGCGACAATGACA+GGG | + | chr8_1:70283384-70283403 | Msa1210940:CDS | 40.0% | |
| TGACGCAGAAGAAGAATCTG+AGG | + | chr8_1:70282124-70282143 | Msa1210940:CDS | 45.0% | |
| ! | CATGAGCTCTGATAAACTGG+CGG | + | chr8_1:70282181-70282200 | Msa1210940:CDS | 45.0% |
| AAGAGGACAGCTATGATGAG+CGG | + | chr8_1:70282636-70282655 | Msa1210940:CDS | 45.0% | |
| TTTCATCCTCCAAGCAATCG+AGG | + | chr8_1:70283097-70283116 | Msa1210940:CDS | 45.0% | |
| AGGAAAAGGCAAAGAATCCG+AGG | + | chr8_1:70283273-70283292 | Msa1210940:CDS | 45.0% | |
| ATCCGAGGACATTTCAACCT+TGG | + | chr8_1:70283288-70283307 | Msa1210940:CDS | 45.0% | |
| CTCCAAGGTTGAAATGTCCT+CGG | - | chr8_1:70283293-70283312 | None:intergenic | 45.0% | |
| ATCTCTTGCGACAATGACAG+GGG | + | chr8_1:70283385-70283404 | Msa1210940:CDS | 45.0% | |
| TGACGCAGAAGAAGAATCTG+AGG | + | chr8_1:70282124-70282143 | Msa1210940:CDS | 45.0% | |
| ! | CATGAGCTCTGATAAACTGG+CGG | + | chr8_1:70282181-70282200 | Msa1210940:CDS | 45.0% |
| AAGAGGACAGCTATGATGAG+CGG | + | chr8_1:70282636-70282655 | Msa1210940:CDS | 45.0% | |
| TTTCATCCTCCAAGCAATCG+AGG | + | chr8_1:70283097-70283116 | Msa1210940:CDS | 45.0% | |
| AGGAAAAGGCAAAGAATCCG+AGG | + | chr8_1:70283273-70283292 | Msa1210940:CDS | 45.0% | |
| ATCCGAGGACATTTCAACCT+TGG | + | chr8_1:70283288-70283307 | Msa1210940:CDS | 45.0% | |
| CTCCAAGGTTGAAATGTCCT+CGG | - | chr8_1:70283293-70283312 | None:intergenic | 45.0% | |
| ATCTCTTGCGACAATGACAG+GGG | + | chr8_1:70283385-70283404 | Msa1210940:CDS | 45.0% | |
| AGAGGACAGCTATGATGAGC+GGG | + | chr8_1:70282637-70282656 | Msa1210940:CDS | 50.0% | |
| GATGAGCGGGAGGAAGAATT+TGG | + | chr8_1:70282650-70282669 | Msa1210940:CDS | 50.0% | |
| CGAGGACATTTCAACCTTGG+AGG | + | chr8_1:70283291-70283310 | Msa1210940:CDS | 50.0% | |
| AGAGGACAGCTATGATGAGC+GGG | + | chr8_1:70282637-70282656 | Msa1210940:CDS | 50.0% | |
| GATGAGCGGGAGGAAGAATT+TGG | + | chr8_1:70282650-70282669 | Msa1210940:CDS | 50.0% | |
| CGAGGACATTTCAACCTTGG+AGG | + | chr8_1:70283291-70283310 | Msa1210940:CDS | 50.0% | |
| ! | GAGCTCTGATAAACTGGCGG+AGG | + | chr8_1:70282184-70282203 | Msa1210940:CDS | 55.0% |
| TGGTCTCCTCGATTGCTTGG+AGG | - | chr8_1:70283106-70283125 | None:intergenic | 55.0% | |
| GCATGGTCTCCTCGATTGCT+TGG | - | chr8_1:70283109-70283128 | None:intergenic | 55.0% | |
| GGGGAAACGTCGTTTGAGCA+TGG | - | chr8_1:70283126-70283145 | None:intergenic | 55.0% | |
| TGCTCAAACGACGTTTCCCC+AGG | + | chr8_1:70283126-70283145 | Msa1210940:CDS | 55.0% | |
| GCTCAAACGACGTTTCCCCA+GGG | + | chr8_1:70283127-70283146 | Msa1210940:CDS | 55.0% | |
| CTCAAACGACGTTTCCCCAG+GGG | + | chr8_1:70283128-70283147 | Msa1210940:CDS | 55.0% | |
| GCGCTTCTGATGTGCAGAAG+TGG | + | chr8_1:70283320-70283339 | Msa1210940:CDS | 55.0% | |
| ! | GAGCTCTGATAAACTGGCGG+AGG | + | chr8_1:70282184-70282203 | Msa1210940:CDS | 55.0% |
| TGGTCTCCTCGATTGCTTGG+AGG | - | chr8_1:70283106-70283125 | None:intergenic | 55.0% | |
| GCATGGTCTCCTCGATTGCT+TGG | - | chr8_1:70283109-70283128 | None:intergenic | 55.0% | |
| GGGGAAACGTCGTTTGAGCA+TGG | - | chr8_1:70283126-70283145 | None:intergenic | 55.0% | |
| TGCTCAAACGACGTTTCCCC+AGG | + | chr8_1:70283126-70283145 | Msa1210940:CDS | 55.0% | |
| GCTCAAACGACGTTTCCCCA+GGG | + | chr8_1:70283127-70283146 | Msa1210940:CDS | 55.0% | |
| CTCAAACGACGTTTCCCCAG+GGG | + | chr8_1:70283128-70283147 | Msa1210940:CDS | 55.0% | |
| GCGCTTCTGATGTGCAGAAG+TGG | + | chr8_1:70283320-70283339 | Msa1210940:CDS | 55.0% | |
| GGACAGCTATGATGAGCGGG+AGG | + | chr8_1:70282640-70282659 | Msa1210940:CDS | 60.0% | |
| !! | AGAAGCGCTCAGCTCCTCCA+AGG | - | chr8_1:70283308-70283327 | None:intergenic | 60.0% |
| GGACAGCTATGATGAGCGGG+AGG | + | chr8_1:70282640-70282659 | Msa1210940:CDS | 60.0% | |
| !! | AGAAGCGCTCAGCTCCTCCA+AGG | - | chr8_1:70283308-70283327 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 70282116 | 70283429 | 70282116 | ID=Msa1210940;Name=Msa1210940 |
| chr8_1 | mRNA | 70282116 | 70283429 | 70282116 | ID=Msa1210940-mRNA-1;Parent=Msa1210940;Name=Msa1210940-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|0.83|1|1|6|0|189 |
| chr8_1 | exon | 70282116 | 70282242 | 70282116 | ID=Msa1210940-mRNA-1:exon:23515;Parent=Msa1210940-mRNA-1 |
| chr8_1 | exon | 70282452 | 70282535 | 70282452 | ID=Msa1210940-mRNA-1:exon:23516;Parent=Msa1210940-mRNA-1 |
| chr8_1 | exon | 70282621 | 70282671 | 70282621 | ID=Msa1210940-mRNA-1:exon:23517;Parent=Msa1210940-mRNA-1 |
| chr8_1 | exon | 70282757 | 70282807 | 70282757 | ID=Msa1210940-mRNA-1:exon:23518;Parent=Msa1210940-mRNA-1 |
| chr8_1 | exon | 70283051 | 70283149 | 70283051 | ID=Msa1210940-mRNA-1:exon:23519;Parent=Msa1210940-mRNA-1 |
| chr8_1 | exon | 70283272 | 70283429 | 70283272 | ID=Msa1210940-mRNA-1:exon:23520;Parent=Msa1210940-mRNA-1 |
| chr8_1 | CDS | 70282116 | 70282242 | 70282116 | ID=Msa1210940-mRNA-1:cds;Parent=Msa1210940-mRNA-1 |
| chr8_1 | CDS | 70282452 | 70282535 | 70282452 | ID=Msa1210940-mRNA-1:cds;Parent=Msa1210940-mRNA-1 |
| chr8_1 | CDS | 70282621 | 70282671 | 70282621 | ID=Msa1210940-mRNA-1:cds;Parent=Msa1210940-mRNA-1 |
| chr8_1 | CDS | 70282757 | 70282807 | 70282757 | ID=Msa1210940-mRNA-1:cds;Parent=Msa1210940-mRNA-1 |
| chr8_1 | CDS | 70283051 | 70283149 | 70283051 | ID=Msa1210940-mRNA-1:cds;Parent=Msa1210940-mRNA-1 |
| chr8_1 | CDS | 70283272 | 70283429 | 70283272 | ID=Msa1210940-mRNA-1:cds;Parent=Msa1210940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
