Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748970 | sp|Q8LC68|NRP2_ARATH | 29.609 | 179 | 114 | 2 | 33 | 199 | 21 | 199 | 7.02e-17 | 79.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748970 | A0A251VFP3 | 33.125 | 160 | 107 | 0 | 13 | 172 | 4 | 163 | 1.89e-19 | 93.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002230 | Msa0748970 | 0.801504 | 8.728532e-49 | -8.615850e-47 |
| Msa0002240 | Msa0748970 | 0.803518 | 3.355732e-49 | -8.615850e-47 |
| Msa0009190 | Msa0748970 | 0.804880 | 1.747120e-49 | -8.615850e-47 |
| Msa0015390 | Msa0748970 | 0.807340 | 5.301656e-50 | -8.615850e-47 |
| Msa0057680 | Msa0748970 | -0.839615 | 1.425232e-57 | -8.615850e-47 |
| Msa0075470 | Msa0748970 | 0.803093 | 4.108501e-49 | -8.615850e-47 |
| Msa0090320 | Msa0748970 | 0.827835 | 1.256399e-54 | -8.615850e-47 |
| Msa0092520 | Msa0748970 | 0.824635 | 7.252901e-54 | -8.615850e-47 |
| Msa0105260 | Msa0748970 | 0.812359 | 4.410276e-51 | -8.615850e-47 |
| Msa0114430 | Msa0748970 | 0.804989 | 1.657716e-49 | -8.615850e-47 |
| Msa0610800 | Msa0748970 | 0.818029 | 2.425972e-52 | -8.615850e-47 |
| Msa0613440 | Msa0748970 | 0.803933 | 2.751534e-49 | -8.615850e-47 |
| Msa0632740 | Msa0748970 | 0.813809 | 2.120968e-51 | -8.615850e-47 |
| Msa0645300 | Msa0748970 | 0.809053 | 2.288538e-50 | -8.615850e-47 |
| Msa0649110 | Msa0748970 | 0.829531 | 4.885497e-55 | -8.615850e-47 |
| Msa0652940 | Msa0748970 | 0.803258 | 3.798897e-49 | -8.615850e-47 |
| Msa0669410 | Msa0748970 | 0.803031 | 4.231777e-49 | -8.615850e-47 |
| Msa0681250 | Msa0748970 | 0.806960 | 6.383203e-50 | -8.615850e-47 |
| Msa0681270 | Msa0748970 | 0.807809 | 4.215558e-50 | -8.615850e-47 |
| Msa0701010 | Msa0748970 | 0.847572 | 1.062521e-59 | -8.615850e-47 |
| Msa0729030 | Msa0748970 | 0.828609 | 8.174107e-55 | -8.615850e-47 |
| Msa0731940 | Msa0748970 | 0.834645 | 2.659579e-56 | -8.615850e-47 |
| Msa0739280 | Msa0748970 | 0.803585 | 3.250124e-49 | -8.615850e-47 |
| Msa0748970 | Msa0755180 | 0.801357 | 9.355005e-49 | -8.615850e-47 |
| Msa0748970 | Msa0767750 | 0.804710 | 1.895385e-49 | -8.615850e-47 |
| Msa0748970 | Msa0767810 | 0.805192 | 1.503158e-49 | -8.615850e-47 |
| Msa0748970 | Msa0768290 | 0.881048 | 3.315714e-70 | -8.615850e-47 |
| Msa0748970 | Msa0768310 | 0.801972 | 6.997581e-49 | -8.615850e-47 |
| Msa0748970 | Msa0768370 | 0.885829 | 5.801690e-72 | -8.615850e-47 |
| Msa0748970 | Msa0773180 | 0.842444 | 2.576045e-58 | -8.615850e-47 |
| Msa0748970 | Msa0784290 | 0.808826 | 2.558494e-50 | -8.615850e-47 |
| Msa0748970 | Msa0800210 | 0.821723 | 3.469334e-53 | -8.615850e-47 |
| Msa0748970 | Msa0810220 | 0.822948 | 1.802282e-53 | -8.615850e-47 |
| Msa0748970 | Msa0814870 | 0.800834 | 1.196716e-48 | -8.615850e-47 |
| Msa0748970 | Msa0820850 | 0.812020 | 5.230690e-51 | -8.615850e-47 |
| Msa0748970 | Msa0824590 | 0.817354 | 3.444092e-52 | -8.615850e-47 |
| Msa0748970 | Msa0826320 | 0.847993 | 8.132514e-60 | -8.615850e-47 |
| Msa0748970 | Msa0832340 | 0.818845 | 1.584684e-52 | -8.615850e-47 |
| Msa0748970 | Msa0842710 | 0.818991 | 1.467792e-52 | -8.615850e-47 |
| Msa0748970 | Msa0844420 | 0.824546 | 7.614297e-54 | -8.615850e-47 |
| Msa0748970 | Msa0844490 | 0.865772 | 4.632670e-65 | -8.615850e-47 |
| Msa0748970 | Msa0849030 | 0.825724 | 4.010139e-54 | -8.615850e-47 |
| Msa0748970 | Msa0858980 | 0.809108 | 2.226932e-50 | -8.615850e-47 |
| Msa0748970 | Msa0861130 | 0.817514 | 3.170402e-52 | -8.615850e-47 |
| Msa0748970 | Msa0864070 | 0.819688 | 1.018695e-52 | -8.615850e-47 |
| Msa0748970 | Msa0868700 | 0.837086 | 6.395799e-57 | -8.615850e-47 |
| Msa0748970 | Msa0877250 | 0.864686 | 1.017247e-64 | -8.615850e-47 |
| Msa0748970 | Msa0888130 | 0.841716 | 4.014316e-58 | -8.615850e-47 |
| Msa0748970 | Msa0897330 | 0.809775 | 1.601655e-50 | -8.615850e-47 |
| Msa0748970 | Msa0899430 | 0.840823 | 6.894601e-58 | -8.615850e-47 |
| Msa0748970 | Msa0899450 | 0.828834 | 7.210698e-55 | -8.615850e-47 |
| Msa0748970 | Msa0900910 | 0.921428 | 3.625305e-88 | -8.615850e-47 |
| Msa0748970 | Msa0900970 | 0.843661 | 1.221693e-58 | -8.615850e-47 |
| Msa0748970 | Msa0900980 | 0.821313 | 4.313818e-53 | -8.615850e-47 |
| Msa0748970 | Msa0901020 | 0.883322 | 4.950503e-71 | -8.615850e-47 |
| Msa0748970 | Msa0901070 | 0.974155 | 1.164071e-137 | -8.615850e-47 |
| Msa0748970 | Msa0901090 | 0.814906 | 1.213346e-51 | -8.615850e-47 |
| Msa0748970 | Msa0907950 | 0.819448 | 1.155591e-52 | -8.615850e-47 |
| Msa0748970 | Msa0907960 | 0.803433 | 3.495089e-49 | -8.615850e-47 |
| Msa0748970 | Msa0914270 | 0.808945 | 2.413167e-50 | -8.615850e-47 |
| Msa0748970 | Msa0914760 | 0.823113 | 1.649652e-53 | -8.615850e-47 |
| Msa0748970 | Msa0915680 | 0.837625 | 4.655079e-57 | -8.615850e-47 |
| Msa0748970 | Msa0916250 | 0.808634 | 2.812906e-50 | -8.615850e-47 |
| Msa0748970 | Msa0924050 | 0.845693 | 3.463724e-59 | -8.615850e-47 |
| Msa0748970 | Msa0924060 | 0.825166 | 5.436539e-54 | -8.615850e-47 |
| Msa0748970 | Msa0925250 | 0.808529 | 2.961666e-50 | -8.615850e-47 |
| Msa0748970 | Msa0925290 | 0.816844 | 4.484828e-52 | -8.615850e-47 |
| Msa0748970 | Msa0925870 | 0.820092 | 8.234562e-53 | -8.615850e-47 |
| Msa0748970 | Msa0927380 | 0.834118 | 3.606493e-56 | -8.615850e-47 |
| Msa0748970 | Msa0936300 | 0.824718 | 6.933043e-54 | -8.615850e-47 |
| Msa0748970 | Msa0948320 | 0.810000 | 1.432641e-50 | -8.615850e-47 |
| Msa0748970 | Msa0952720 | 0.821028 | 5.019409e-53 | -8.615850e-47 |
| Msa0748970 | Msa0958550 | 0.837771 | 4.269072e-57 | -8.615850e-47 |
| Msa0748970 | Msa0961980 | 0.807345 | 5.289270e-50 | -8.615850e-47 |
| Msa0748970 | Msa0964900 | 0.816260 | 6.061230e-52 | -8.615850e-47 |
| Msa0748970 | Msa0966750 | 0.882231 | 1.238577e-70 | -8.615850e-47 |
| Msa0748970 | Msa0966770 | 0.860438 | 2.064892e-63 | -8.615850e-47 |
| Msa0748970 | Msa0967280 | 0.893246 | 7.514491e-75 | -8.615850e-47 |
| Msa0748970 | Msa0969520 | 0.820210 | 7.734566e-53 | -8.615850e-47 |
| Msa0748970 | Msa0969810 | 0.815069 | 1.116716e-51 | -8.615850e-47 |
| Msa0748970 | Msa0973100 | 0.826708 | 2.338939e-54 | -8.615850e-47 |
| Msa0748970 | Msa0974070 | 0.802997 | 4.301935e-49 | -8.615850e-47 |
| Msa0748970 | Msa0974080 | 0.837637 | 4.621756e-57 | -8.615850e-47 |
| Msa0748970 | Msa0976670 | 0.845290 | 4.453759e-59 | -8.615850e-47 |
| Msa0748970 | Msa0989620 | 0.842586 | 2.362627e-58 | -8.615850e-47 |
| Msa0748970 | Msa0997500 | 0.832721 | 8.040757e-56 | -8.615850e-47 |
| Msa0748970 | Msa0998690 | 0.825763 | 3.924769e-54 | -8.615850e-47 |
| Msa0748970 | Msa1000880 | 0.802937 | 4.426539e-49 | -8.615850e-47 |
| Msa0748970 | Msa1000890 | 0.802501 | 5.444927e-49 | -8.615850e-47 |
| Msa0748970 | Msa1002360 | 0.802069 | 6.681615e-49 | -8.615850e-47 |
| Msa0748970 | Msa1009070 | 0.815977 | 7.011688e-52 | -8.615850e-47 |
| Msa0748970 | Msa1014540 | 0.800606 | 1.332041e-48 | -8.615850e-47 |
| Msa0748970 | Msa1015490 | 0.815628 | 8.388616e-52 | -8.615850e-47 |
| Msa0748970 | Msa1051210 | 0.808805 | 2.585709e-50 | -8.615850e-47 |
| Msa0748970 | Msa1054150 | -0.819032 | 1.437210e-52 | -8.615850e-47 |
| Msa0748970 | Msa1060840 | 0.804967 | 1.674803e-49 | -8.615850e-47 |
| Msa0748970 | Msa1068420 | 0.839828 | 1.254537e-57 | -8.615850e-47 |
| Msa0748970 | Msa1075650 | 0.801281 | 9.697380e-49 | -8.615850e-47 |
| Msa0748970 | Msa1085740 | 0.801110 | 1.050931e-48 | -8.615850e-47 |
| Msa0748970 | Msa1109680 | 0.828026 | 1.129751e-54 | -8.615850e-47 |
| Msa0748970 | Msa1110090 | 0.809462 | 1.870223e-50 | -8.615850e-47 |
| Msa0748970 | Msa1113170 | 0.809203 | 2.125359e-50 | -8.615850e-47 |
| Msa0748970 | Msa1117560 | 0.804412 | 2.187639e-49 | -8.615850e-47 |
| Msa0748970 | Msa1118330 | 0.807162 | 5.782668e-50 | -8.615850e-47 |
| Msa0748970 | Msa1120610 | 0.827740 | 1.324207e-54 | -8.615850e-47 |
| Msa0748970 | Msa1120740 | 0.826652 | 2.411580e-54 | -8.615850e-47 |
| Msa0748970 | Msa1121480 | 0.858801 | 6.420943e-63 | -8.615850e-47 |
| Msa0748970 | Msa1121490 | 0.856274 | 3.594698e-62 | -8.615850e-47 |
| Msa0748970 | Msa1137570 | 0.842721 | 2.175436e-58 | -8.615850e-47 |
| Msa0748970 | Msa1139680 | 0.810578 | 1.075332e-50 | -8.615850e-47 |
| Msa0748970 | Msa1146120 | 0.804790 | 1.824227e-49 | -8.615850e-47 |
| Msa0748970 | Msa1156020 | 0.828165 | 1.045987e-54 | -8.615850e-47 |
| Msa0748970 | Msa1195190 | 0.805570 | 1.252543e-49 | -8.615850e-47 |
| Msa0748970 | Msa1210940 | 0.802838 | 4.640016e-49 | -8.615850e-47 |
| Msa0748970 | Msa1241130 | -0.806526 | 7.882871e-50 | -8.615850e-47 |
| Msa0748970 | Msa1248300 | 0.866533 | 2.660470e-65 | -8.615850e-47 |
| Msa0748970 | Msa1248310 | 0.874119 | 8.665529e-68 | -8.615850e-47 |
| Msa0748970 | Msa1248370 | 0.885421 | 8.253164e-72 | -8.615850e-47 |
| Msa0748970 | Msa1276890 | 0.834065 | 3.717145e-56 | -8.615850e-47 |
| Msa0748970 | Msa1277660 | 0.814792 | 1.286015e-51 | -8.615850e-47 |
| Msa0748970 | Msa1281510 | 0.801322 | 9.509165e-49 | -8.615850e-47 |
| Msa0748970 | Msa1282580 | -0.814475 | 1.511747e-51 | -8.615850e-47 |
| Msa0748970 | Msa1284680 | 0.815830 | 7.561283e-52 | -8.615850e-47 |
| Msa0748970 | Msa1286800 | 0.829194 | 5.898740e-55 | -8.615850e-47 |
| Msa0748970 | Msa1287190 | 0.813814 | 2.116018e-51 | -8.615850e-47 |
| Msa0748970 | Msa1288560 | 0.805845 | 1.096638e-49 | -8.615850e-47 |
| Msa0748970 | Msa1289420 | 0.832964 | 7.000190e-56 | -8.615850e-47 |
| Msa0748970 | Msa1289430 | 0.808565 | 2.910378e-50 | -8.615850e-47 |
| Msa0748970 | Msa1296280 | 0.800621 | 1.322668e-48 | -8.615850e-47 |
| Msa0748970 | Msa1299120 | 0.828375 | 9.310165e-55 | -8.615850e-47 |
| Msa0748970 | Msa1313140 | 0.803749 | 3.005199e-49 | -8.615850e-47 |
| Msa0748970 | Msa1334250 | 0.801850 | 7.413398e-49 | -8.615850e-47 |
| Msa0748970 | Msa1344520 | 0.809198 | 2.129917e-50 | -8.615850e-47 |
| Msa0748970 | Msa1345220 | 0.830639 | 2.621805e-55 | -8.615850e-47 |
| Msa0748970 | Msa1366810 | 0.847920 | 8.521411e-60 | -8.615850e-47 |
| Msa0748970 | Msa1366970 | 0.842949 | 1.891309e-58 | -8.615850e-47 |
| Msa0748970 | Msa1384240 | 0.839119 | 1.917398e-57 | -8.615850e-47 |
| Msa0748970 | Msa1395900 | 0.809102 | 2.233473e-50 | -8.615850e-47 |
| Msa0748970 | Msa1395910 | 0.803779 | 2.961362e-49 | -8.615850e-47 |
| Msa0748970 | Msa1400720 | 0.824361 | 8.416525e-54 | -8.615850e-47 |
| Msa0748970 | Msa1420820 | 0.813242 | 2.826876e-51 | -8.615850e-47 |
| Msa0748970 | Msa1444440 | 0.806247 | 9.023339e-50 | -8.615850e-47 |
| Msa0748970 | Msa1448640 | 0.803080 | 4.135385e-49 | -8.615850e-47 |
| Msa0748970 | Msa1453560 | 0.803437 | 3.487353e-49 | -8.615850e-47 |
| Msa0748970 | Msa1458750 | 0.858690 | 6.927031e-63 | -8.615850e-47 |
| Msa0748970 | Msa1466540 | 0.804874 | 1.752230e-49 | -8.615850e-47 |
| Msa0131770 | Msa0748970 | 0.855699 | 5.294274e-62 | -8.615850e-47 |
| Msa0137640 | Msa0748970 | 0.829433 | 5.162306e-55 | -8.615850e-47 |
| Msa0145190 | Msa0748970 | 0.834148 | 3.543590e-56 | -8.615850e-47 |
| Msa0150840 | Msa0748970 | 0.808403 | 3.150694e-50 | -8.615850e-47 |
| Msa0170220 | Msa0748970 | 0.815073 | 1.114026e-51 | -8.615850e-47 |
| Msa0180500 | Msa0748970 | 0.831433 | 1.673878e-55 | -8.615850e-47 |
| Msa0182740 | Msa0748970 | 0.832274 | 1.037770e-55 | -8.615850e-47 |
| Msa0188460 | Msa0748970 | 0.807431 | 5.071355e-50 | -8.615850e-47 |
| Msa0196840 | Msa0748970 | 0.803315 | 3.697374e-49 | -8.615850e-47 |
| Msa0198910 | Msa0748970 | 0.802352 | 5.843823e-49 | -8.615850e-47 |
| Msa0379940 | Msa0748970 | 0.830248 | 3.268315e-55 | -8.615850e-47 |
| Msa0380850 | Msa0748970 | 0.809980 | 1.446929e-50 | -8.615850e-47 |
| Msa0388950 | Msa0748970 | 0.806363 | 8.532077e-50 | -8.615850e-47 |
| Msa0391180 | Msa0748970 | 0.800771 | 1.232785e-48 | -8.615850e-47 |
| Msa0411390 | Msa0748970 | 0.836137 | 1.115773e-56 | -8.615850e-47 |
| Msa0413410 | Msa0748970 | 0.810341 | 1.209415e-50 | -8.615850e-47 |
| Msa0424320 | Msa0748970 | 0.844520 | 7.186035e-59 | -8.615850e-47 |
| Msa0425790 | Msa0748970 | 0.827104 | 1.880738e-54 | -8.615850e-47 |
| Msa0430920 | Msa0748970 | 0.821737 | 3.443992e-53 | -8.615850e-47 |
| Msa0434000 | Msa0748970 | 0.857221 | 1.891695e-62 | -8.615850e-47 |
| Msa0434180 | Msa0748970 | 0.801049 | 1.081332e-48 | -8.615850e-47 |
| Msa0446270 | Msa0748970 | 0.800750 | 1.244955e-48 | -8.615850e-47 |
| Msa0450000 | Msa0748970 | 0.812493 | 4.123862e-51 | -8.615850e-47 |
| Msa0459260 | Msa0748970 | 0.815900 | 7.292468e-52 | -8.615850e-47 |
| Msa0461160 | Msa0748970 | 0.802475 | 5.513430e-49 | -8.615850e-47 |
| Msa0471550 | Msa0748970 | 0.802776 | 4.777007e-49 | -8.615850e-47 |
| Msa0479340 | Msa0748970 | 0.800634 | 1.314711e-48 | -8.615850e-47 |
| Msa0251640 | Msa0748970 | 0.822819 | 1.931363e-53 | -8.615850e-47 |
| Msa0275000 | Msa0748970 | 0.802615 | 5.158931e-49 | -8.615850e-47 |
| Msa0275020 | Msa0748970 | 0.831217 | 1.891613e-55 | -8.615850e-47 |
| Msa0278110 | Msa0748970 | 0.804999 | 1.649925e-49 | -8.615850e-47 |
| Msa0278190 | Msa0748970 | 0.826924 | 2.077293e-54 | -8.615850e-47 |
| Msa0290870 | Msa0748970 | 0.814423 | 1.552414e-51 | -8.615850e-47 |
| Msa0305190 | Msa0748970 | 0.807663 | 4.527618e-50 | -8.615850e-47 |
| Msa0313960 | Msa0748970 | 0.814656 | 1.378663e-51 | -8.615850e-47 |
| Msa0315940 | Msa0748970 | 0.828168 | 1.044556e-54 | -8.615850e-47 |
| Msa0321310 | Msa0748970 | 0.813919 | 2.005697e-51 | -8.615850e-47 |
| Msa0322360 | Msa0748970 | 0.801501 | 8.739738e-49 | -8.615850e-47 |
| Msa0342750 | Msa0748970 | 0.953470 | 2.556466e-111 | -8.615850e-47 |
| Msa0342800 | Msa0748970 | 0.804525 | 2.072243e-49 | -8.615850e-47 |
| Msa0342810 | Msa0748970 | 0.848751 | 5.021182e-60 | -8.615850e-47 |
| Msa0344920 | Msa0748970 | 0.809651 | 1.702919e-50 | -8.615850e-47 |
| Msa0483150 | Msa0748970 | 0.812542 | 4.023181e-51 | -8.615850e-47 |
| Msa0490140 | Msa0748970 | 0.802629 | 5.124510e-49 | -8.615850e-47 |
| Msa0493000 | Msa0748970 | 0.843246 | 1.576319e-58 | -8.615850e-47 |
| Msa0519000 | Msa0748970 | 0.811534 | 6.673221e-51 | -8.615850e-47 |
| Msa0523940 | Msa0748970 | 0.835841 | 1.326416e-56 | -8.615850e-47 |
| Msa0534230 | Msa0748970 | 0.800484 | 1.410594e-48 | -8.615850e-47 |
| Msa0537720 | Msa0748970 | 0.843600 | 1.268164e-58 | -8.615850e-47 |
| Msa0545700 | Msa0748970 | 0.804931 | 1.704627e-49 | -8.615850e-47 |
| Msa0555700 | Msa0748970 | 0.806623 | 7.519147e-50 | -8.615850e-47 |
| Msa0585230 | Msa0748970 | 0.820288 | 7.424409e-53 | -8.615850e-47 |
| Msa0598780 | Msa0748970 | 0.806178 | 9.332577e-50 | -8.615850e-47 |
| Msa0598790 | Msa0748970 | 0.802329 | 5.908578e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748970 | MtrunA17_Chr4g0060621 | 34.058 | 138 | 91 | 0 | 33 | 170 | 20 | 157 | 5.80e-20 | 85.1 |
| Msa0748970 | MtrunA17_Chr3g0092521 | 28.700 | 223 | 115 | 6 | 23 | 201 | 8 | 230 | 4.19e-15 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748970 | AT1G18800.1 | 29.609 | 179 | 114 | 2 | 33 | 199 | 21 | 199 | 6.95e-18 | 79.7 |
| Msa0748970 | AT1G74560.1 | 29.801 | 151 | 100 | 1 | 33 | 177 | 25 | 175 | 1.50e-17 | 79.0 |
| Msa0748970 | AT1G74560.3 | 29.801 | 151 | 100 | 1 | 33 | 177 | 25 | 175 | 1.80e-17 | 79.0 |
Find 41 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTATTTGTTACCATAAAA+TGG | 0.187975 | 5_2:-2336928 | Msa0748970:three_prime_UTR |
| ATCAACTGCCTTGCTAATTT+CGG | 0.265734 | 5_2:+2339567 | None:intergenic |
| TTTATTCTTTGGCAGGTGTT+TGG | 0.281768 | 5_2:-2337109 | Msa0748970:intron |
| TTATTCTTTGGCAGGTGTTT+GGG | 0.290975 | 5_2:-2337108 | Msa0748970:intron |
| TGGATTTAGCTTTAGCTTGT+TGG | 0.316301 | 5_2:-2336991 | Msa0748970:three_prime_UTR |
| TGTTTGGGTGTGTACTGTTT+TGG | 0.348674 | 5_2:-2337093 | Msa0748970:three_prime_UTR |
| TAAGCGTGAAAGCGAAAGTT+TGG | 0.375900 | 5_2:+2336884 | None:intergenic |
| TTTGAATGACTTTGATAGAA+TGG | 0.393980 | 5_2:-2338980 | Msa0748970:intron |
| GAGAAAGTGCAGTGGGCAAC+AGG | 0.402653 | 5_2:-2338517 | Msa0748970:CDS |
| GAATAAACTCACAAATGAAA+TGG | 0.403761 | 5_2:+2338723 | None:intergenic |
| GGCAACAGGTGTAAGCTATA+AGG | 0.408748 | 5_2:-2338503 | Msa0748970:CDS |
| TGTAGGATTTCGAAGAGAAA+AGG | 0.409008 | 5_2:-2339243 | Msa0748970:intron |
| GCTCTTGGGGAATCTTGCTT+CGG | 0.412092 | 5_2:+2339647 | None:intergenic |
| TGCTGATGTTACTTCTATCA+TGG | 0.431416 | 5_2:-2338779 | Msa0748970:CDS |
| AACGTTTGTGTGGTCCTACT+TGG | 0.436691 | 5_2:-2337011 | Msa0748970:three_prime_UTR |
| TTGGAATTATGTAAACTTGT+GGG | 0.438466 | 5_2:-2337039 | Msa0748970:three_prime_UTR |
| TGTTGTGTATGGCATAAGTT+AGG | 0.439041 | 5_2:-2336840 | Msa0748970:three_prime_UTR |
| GTGGCAGGCTGACGATGATC+AGG | 0.440468 | 5_2:-2337250 | Msa0748970:CDS |
| TCACTTCGGTCATCACAGAT+AGG | 0.454456 | 5_2:+2339175 | None:intergenic |
| TTTAGATTATGACATAGAAA+TGG | 0.460098 | 5_2:-2339218 | Msa0748970:CDS |
| GTAGGATTTCGAAGAGAAAA+GGG | 0.469794 | 5_2:-2339242 | Msa0748970:intron |
| ATTATGACATAGAAATGGTC+TGG | 0.472592 | 5_2:-2339213 | Msa0748970:CDS |
| AAACATCAAGAAGGCAAGAA+TGG | 0.478874 | 5_2:-2338751 | Msa0748970:CDS |
| ATGGCATAAGTTAGGTCAAA+AGG | 0.479827 | 5_2:-2336832 | Msa0748970:three_prime_UTR |
| AGAGAGAGTGTTAATTCATA+AGG | 0.481707 | 5_2:-2337804 | Msa0748970:CDS |
| GATGTTACTTCTATCATGGT+TGG | 0.491960 | 5_2:-2338775 | Msa0748970:CDS |
| GTGCGTACCTCATTGCGCAC+TGG | 0.506973 | 5_2:+2337221 | None:intergenic |
| AAATGGTCTGGACAGAGAAA+AGG | 0.514689 | 5_2:-2339201 | Msa0748970:CDS |
| TAAGGACAGAGATGAAGATC+AGG | 0.524002 | 5_2:-2337786 | Msa0748970:intron |
| CAGGCTGACGATGATCAGGC+TGG | 0.572324 | 5_2:-2337246 | Msa0748970:CDS |
| TGTTTCAGAGAAAGTGCAGT+GGG | 0.596117 | 5_2:-2338524 | Msa0748970:CDS |
| TTTGGAATTATGTAAACTTG+TGG | 0.600994 | 5_2:-2337040 | Msa0748970:three_prime_UTR |
| ATGGTTGGAAAACATCAAGA+AGG | 0.604620 | 5_2:-2338760 | Msa0748970:CDS |
| AGCTAAAGCTAAATCCAAGT+AGG | 0.628117 | 5_2:+2336997 | None:intergenic |
| GTGGGCATTTAACGTTTGTG+TGG | 0.639086 | 5_2:-2337021 | Msa0748970:three_prime_UTR |
| GCTATAAGGACCGCAAGGAG+AGG | 0.641512 | 5_2:-2338489 | Msa0748970:intron |
| TTCATACTAATAAGTCGACA+TGG | 0.661825 | 5_2:+2336965 | None:intergenic |
| TGTAAGCTATAAGGACCGCA+AGG | 0.674564 | 5_2:-2338494 | Msa0748970:CDS |
| GCTGGATCCAGTGCGCAATG+AGG | 0.703489 | 5_2:-2337228 | Msa0748970:intron |
| ATGTTTCAGAGAAAGTGCAG+TGG | 0.705196 | 5_2:-2338525 | Msa0748970:CDS |
| TAATCACTAACCTCTCCTTG+CGG | 0.722225 | 5_2:+2338479 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTAGTAAAATAAACTT+CGG | + | chr5_2:2337827-2337846 | None:intergenic | 10.0% |
| !!! | AAATATAATTAATTTTGTGT+GGG | - | chr5_2:2338359-2338378 | Msa0748970:intron | 10.0% |
| !! | CAAAAAAAATAAAATTAACA+AGG | + | chr5_2:2339353-2339372 | None:intergenic | 10.0% |
| !! | GTTAAAACTAAACTAAATAT+AGG | - | chr5_2:2337058-2337077 | Msa0748970:three_prime_UTR | 15.0% |
| !! | AAATGTTGTAAATTTCATTT+AGG | - | chr5_2:2337401-2337420 | Msa0748970:intron | 15.0% |
| !! | TTCAAAAAATAATTAAGCTT+AGG | + | chr5_2:2337501-2337520 | None:intergenic | 15.0% |
| !! | ATTTCAAACAAAAACAAAAT+CGG | + | chr5_2:2337578-2337597 | None:intergenic | 15.0% |
| !!! | GAAATATAATTAATTTTGTG+TGG | - | chr5_2:2338358-2338377 | Msa0748970:intron | 15.0% |
| !! | ACAAAATTATCCTTAATAAA+TGG | - | chr5_2:2338405-2338424 | Msa0748970:intron | 15.0% |
| !! | TAAATAGTTAAGGATATAAT+AGG | - | chr5_2:2338470-2338489 | Msa0748970:intron | 15.0% |
| !! | AAATAACATTAATGTTTCAT+TGG | - | chr5_2:2338495-2338514 | Msa0748970:CDS | 15.0% |
| !! | ACATTATAATAATATTTACC+AGG | + | chr5_2:2338875-2338894 | None:intergenic | 15.0% |
| !!! | CATTTTATTTATTATAGCTA+AGG | + | chr5_2:2339105-2339124 | None:intergenic | 15.0% |
| !! | CAAAGAATAAAAGAAAATAA+TGG | + | chr5_2:2339377-2339396 | None:intergenic | 15.0% |
| !!! | CATTATTTTCTTTTATTCTT+TGG | - | chr5_2:2339375-2339394 | Msa0748970:intron | 15.0% |
| !!! | TACCTTTTTTATGATCTTTT+GGG | + | chr5_2:2336967-2336986 | None:intergenic | 20.0% |
| !!! | ATACCTTTTTTATGATCTTT+TGG | + | chr5_2:2336968-2336987 | None:intergenic | 20.0% |
| !! | AAACTAAACTAAATATAGGT+TGG | - | chr5_2:2337062-2337081 | Msa0748970:three_prime_UTR | 20.0% |
| !! | TTTAGATTATGACATAGAAA+TGG | - | chr5_2:2337277-2337296 | Msa0748970:intron | 20.0% |
| !! | AAAAATAATTAAGCTTAGGA+TGG | + | chr5_2:2337497-2337516 | None:intergenic | 20.0% |
| !! | GCAAATATCTATAAAATACA+AGG | + | chr5_2:2337699-2337718 | None:intergenic | 20.0% |
| !!! | AACTTGTAATGTTTTTGTTT+AGG | - | chr5_2:2337869-2337888 | Msa0748970:intron | 20.0% |
| !!! | AATGTTTTTGTTTAGGAATT+TGG | - | chr5_2:2337876-2337895 | Msa0748970:intron | 20.0% |
| !! | TAATAAAGGAAATAGGTATA+TGG | + | chr5_2:2338207-2338226 | None:intergenic | 20.0% |
| !! | ATTATCCTTAATAAATGGTA+TGG | - | chr5_2:2338410-2338429 | Msa0748970:intron | 20.0% |
| !! | TTATCCTTAATAAATGGTAT+GGG | - | chr5_2:2338411-2338430 | Msa0748970:intron | 20.0% |
| !! | TTGTAAAGTGACATATAATT+TGG | - | chr5_2:2338520-2338539 | Msa0748970:CDS | 20.0% |
| !! | TGTAAAGTGACATATAATTT+GGG | - | chr5_2:2338521-2338540 | Msa0748970:CDS | 20.0% |
| !!! | AGCTAAGGTTTTAATATAAT+TGG | + | chr5_2:2339090-2339109 | None:intergenic | 20.0% |
| !! | TTCATTTCAAAAACTAGTTA+TGG | + | chr5_2:2339171-2339190 | None:intergenic | 20.0% |
| !! | AATGAACAATAAAGATGTTA+CGG | - | chr5_2:2339185-2339204 | Msa0748970:CDS | 20.0% |
| !!! | TTACAATTTTTAAAGTTCAG+AGG | + | chr5_2:2339305-2339324 | None:intergenic | 20.0% |
| !!! | TGTTATTTGTTACCATAAAA+TGG | - | chr5_2:2339567-2339586 | Msa0748970:CDS | 20.0% |
| ! | AACCCAAAAGATCATAAAAA+AGG | - | chr5_2:2336962-2336981 | Msa0748970:three_prime_UTR | 25.0% |
| ! | TAAACAAACAACTTATCTGA+TGG | + | chr5_2:2336999-2337018 | None:intergenic | 25.0% |
| ! | TGATAAACTGCATTAGATAT+TGG | - | chr5_2:2337032-2337051 | Msa0748970:three_prime_UTR | 25.0% |
| ! | GTTGTCTCTAATATTTGTTT+AGG | - | chr5_2:2337084-2337103 | Msa0748970:three_prime_UTR | 25.0% |
| !! | ATCTTTAGTCACTTTAACTA+TGG | - | chr5_2:2337116-2337135 | Msa0748970:intron | 25.0% |
| !! | TCTTTAGTCACTTTAACTAT+GGG | - | chr5_2:2337117-2337136 | Msa0748970:intron | 25.0% |
| !!! | TCTTTTTGATAATCTCACTT+CGG | + | chr5_2:2337337-2337356 | None:intergenic | 25.0% |
| ! | AAAACCTGCACAAAAAAATA+AGG | + | chr5_2:2337471-2337490 | None:intergenic | 25.0% |
| ! | TTTGAATGACTTTGATAGAA+TGG | - | chr5_2:2337515-2337534 | Msa0748970:intron | 25.0% |
| !! | TGTTTATTAAGCTTGTTTGA+TGG | - | chr5_2:2337602-2337621 | Msa0748970:intron | 25.0% |
| !! | GTTTATTAAGCTTGTTTGAT+GGG | - | chr5_2:2337603-2337622 | Msa0748970:intron | 25.0% |
| ! | ATTCATCACGTACAAATAAA+GGG | + | chr5_2:2337657-2337676 | None:intergenic | 25.0% |
| ! | TATTCATCACGTACAAATAA+AGG | + | chr5_2:2337658-2337677 | None:intergenic | 25.0% |
| ! | GAATAAACTCACAAATGAAA+TGG | + | chr5_2:2337775-2337794 | None:intergenic | 25.0% |
| ! | AGTTTATTCTTGTCTTTACT+TGG | - | chr5_2:2337786-2337805 | Msa0748970:intron | 25.0% |
| ! | TCAACTCTAATAAAGGAAAT+AGG | + | chr5_2:2338151-2338170 | None:intergenic | 25.0% |
| ! | CTAACTCTAATAAAGGAAAT+AGG | + | chr5_2:2338214-2338233 | None:intergenic | 25.0% |
| ! | TTAGAGTCTAACTCTAATAA+AGG | + | chr5_2:2338221-2338240 | None:intergenic | 25.0% |
| ! | CACTATTGAAAACAAAGAAA+AGG | + | chr5_2:2338283-2338302 | None:intergenic | 25.0% |
| ! | GAGAGAGTAATAAATAGTTA+AGG | - | chr5_2:2338460-2338479 | Msa0748970:intron | 25.0% |
| ! | GTAAAGTGACATATAATTTG+GGG | - | chr5_2:2338522-2338541 | Msa0748970:CDS | 25.0% |
| ! | AGCAATCTACAATTTAGAAA+AGG | + | chr5_2:2338822-2338841 | None:intergenic | 25.0% |
| !! | ATTGTGAAAATTTTCCTTAG+TGG | - | chr5_2:2339226-2339245 | Msa0748970:CDS | 25.0% |
| !! | AGGTACATTTACAATTTTCA+AGG | + | chr5_2:2339333-2339352 | None:intergenic | 25.0% |
| !! | ATTTTCTTTTATTCTTTGGC+AGG | - | chr5_2:2339379-2339398 | Msa0748970:intron | 25.0% |
| !! | TTTGGAATTATGTAAACTTG+TGG | - | chr5_2:2339455-2339474 | Msa0748970:intron | 25.0% |
| ! | TTGGAATTATGTAAACTTGT+GGG | - | chr5_2:2339456-2339475 | Msa0748970:intron | 25.0% |
| !! | TACGATTCTTATCCATTTTA+TGG | + | chr5_2:2339582-2339601 | None:intergenic | 25.0% |
| ! | CTTTAGTCACTTTAACTATG+GGG | - | chr5_2:2337118-2337137 | Msa0748970:intron | 30.0% |
| GCTTCTAATGTTATGTTTGT+AGG | - | chr5_2:2337235-2337254 | Msa0748970:CDS | 30.0% | |
| ATTATGACATAGAAATGGTC+TGG | - | chr5_2:2337282-2337301 | Msa0748970:intron | 30.0% | |
| ! | TCAAAAAGATTCCTCTTTTC+TGG | - | chr5_2:2337348-2337367 | Msa0748970:intron | 30.0% |
| TCTATGTAATCAAGATGTTG+CGG | - | chr5_2:2337551-2337570 | Msa0748970:intron | 30.0% | |
| CTAACTCTAATAAAGGCAAT+AGG | + | chr5_2:2338085-2338104 | None:intergenic | 30.0% | |
| TAAGGGTCTAACTCTAATAA+AGG | + | chr5_2:2338092-2338111 | None:intergenic | 30.0% | |
| CTAAGTGTCAACTCTAATAA+AGG | + | chr5_2:2338158-2338177 | None:intergenic | 30.0% | |
| CTTTCCCATACCATTTATTA+AGG | + | chr5_2:2338418-2338437 | None:intergenic | 30.0% | |
| !!! | GGACAAATTTTTTTCCCAAA+GGG | - | chr5_2:2338543-2338562 | Msa0748970:CDS | 30.0% |
| !! | AGAGAGAGTGTTAATTCATA+AGG | - | chr5_2:2338691-2338710 | Msa0748970:intron | 30.0% |
| ATTGCTGATGTCATCATATA+TGG | - | chr5_2:2338836-2338855 | Msa0748970:intron | 30.0% | |
| ! | AAGTGTTGTCAACCAAATAA+AGG | - | chr5_2:2339013-2339032 | Msa0748970:intron | 30.0% |
| !! | AAACTACTAAGTTCTGGATT+TGG | + | chr5_2:2339132-2339151 | None:intergenic | 30.0% |
| CAAAACAAACTACTAAGTTC+TGG | + | chr5_2:2339138-2339157 | None:intergenic | 30.0% | |
| !!! | GTTTTGGCTATGTAAAATTG+TGG | - | chr5_2:2339418-2339437 | Msa0748970:intron | 30.0% |
| ! | GTGGAAATTTTGCTTGTATT+TGG | - | chr5_2:2339437-2339456 | Msa0748970:intron | 30.0% |
| TTCATACTAATAAGTCGACA+TGG | + | chr5_2:2339533-2339552 | None:intergenic | 30.0% | |
| !!! | AATTTCGGCTTTTTCGGATT+TGG | + | chr5_2:2336916-2336935 | None:intergenic | 35.0% |
| ! | CTTGCTAATTTCGGCTTTTT+CGG | + | chr5_2:2336922-2336941 | None:intergenic | 35.0% |
| ATCAACTGCCTTGCTAATTT+CGG | + | chr5_2:2336931-2336950 | None:intergenic | 35.0% | |
| ! | GCTTTCTCTAAAAATACTCG+AGG | - | chr5_2:2337144-2337163 | Msa0748970:intron | 35.0% |
| TGTAGGATTTCGAAGAGAAA+AGG | - | chr5_2:2337252-2337271 | Msa0748970:CDS | 35.0% | |
| GTAGGATTTCGAAGAGAAAA+GGG | - | chr5_2:2337253-2337272 | Msa0748970:intron | 35.0% | |
| !!! | GATGCCTTATTTTTTTGTGC+AGG | - | chr5_2:2337464-2337483 | Msa0748970:intron | 35.0% |
| ! | GATAGAATGGTACGACATTT+TGG | - | chr5_2:2337528-2337547 | Msa0748970:intron | 35.0% |
| ! | TGCTGATGTTACTTCTATCA+TGG | - | chr5_2:2337716-2337735 | Msa0748970:intron | 35.0% |
| ! | GATGTTACTTCTATCATGGT+TGG | - | chr5_2:2337720-2337739 | Msa0748970:intron | 35.0% |
| ATGGTTGGAAAACATCAAGA+AGG | - | chr5_2:2337735-2337754 | Msa0748970:intron | 35.0% | |
| AAACATCAAGAAGGCAAGAA+TGG | - | chr5_2:2337744-2337763 | Msa0748970:intron | 35.0% | |
| TAACAGTCAGAGTGAACTAA+GGG | + | chr5_2:2338109-2338128 | None:intergenic | 35.0% | |
| ATAACAGTCAGAGTGAACTA+AGG | + | chr5_2:2338110-2338129 | None:intergenic | 35.0% | |
| !!! | GGGACAAATTTTTTTCCCAA+AGG | - | chr5_2:2338542-2338561 | Msa0748970:CDS | 35.0% |
| AATGCAGTTTCTTTAGTTGG+TGG | - | chr5_2:2338660-2338679 | Msa0748970:intron | 35.0% | |
| ATGTCATCATATATGGCTTC+TGG | - | chr5_2:2338843-2338862 | Msa0748970:intron | 35.0% | |
| TGTCATCATATATGGCTTCT+GGG | - | chr5_2:2338844-2338863 | Msa0748970:intron | 35.0% | |
| ATGCTATATCGTGACTATAG+CGG | + | chr5_2:2338949-2338968 | None:intergenic | 35.0% | |
| CTATAGTCACGATATAGCAT+TGG | - | chr5_2:2338949-2338968 | Msa0748970:intron | 35.0% | |
| GAACAATAAAGATGTTACGG+TGG | - | chr5_2:2339188-2339207 | Msa0748970:CDS | 35.0% | |
| ! | TGAAAATTTTCCTTAGTGGC+AGG | - | chr5_2:2339230-2339249 | Msa0748970:CDS | 35.0% |
| TTTATTCTTTGGCAGGTGTT+TGG | - | chr5_2:2339386-2339405 | Msa0748970:intron | 35.0% | |
| TTATTCTTTGGCAGGTGTTT+GGG | - | chr5_2:2339387-2339406 | Msa0748970:intron | 35.0% | |
| AGCTAAAGCTAAATCCAAGT+AGG | + | chr5_2:2339501-2339520 | None:intergenic | 35.0% | |
| !! | TGGATTTAGCTTTAGCTTGT+TGG | - | chr5_2:2339504-2339523 | Msa0748970:intron | 35.0% |
| !!! | GCTGTTTTTACTGTTGTGTA+TGG | - | chr5_2:2339644-2339663 | Msa0748970:CDS | 35.0% |
| TGTTGTGTATGGCATAAGTT+AGG | - | chr5_2:2339655-2339674 | Msa0748970:CDS | 35.0% | |
| ATGGCATAAGTTAGGTCAAA+AGG | - | chr5_2:2339663-2339682 | Msa0748970:CDS | 35.0% | |
| TCCCCAAGAGCAAAAAAGAA+AGG | - | chr5_2:2336860-2336879 | Msa0748970:three_prime_UTR | 40.0% | |
| !!! | GCCTTTCTTTTTTGCTCTTG+GGG | + | chr5_2:2336864-2336883 | None:intergenic | 40.0% |
| !!! | CGCCTTTCTTTTTTGCTCTT+GGG | + | chr5_2:2336865-2336884 | None:intergenic | 40.0% |
| !!! | ACGCCTTTCTTTTTTGCTCT+TGG | + | chr5_2:2336866-2336885 | None:intergenic | 40.0% |
| !!! | GGCTTTTTCGGATTTGGATT+TGG | + | chr5_2:2336910-2336929 | None:intergenic | 40.0% |
| CGAAAAAGCCGAAATTAGCA+AGG | - | chr5_2:2336920-2336939 | Msa0748970:three_prime_UTR | 40.0% | |
| GAAGCAAGTCTAGTTACTGA+TGG | + | chr5_2:2337220-2337239 | None:intergenic | 40.0% | |
| AAATGGTCTGGACAGAGAAA+AGG | - | chr5_2:2337294-2337313 | Msa0748970:intron | 40.0% | |
| ! | ACAGCAGTTTTCCAGAAAAG+AGG | + | chr5_2:2337362-2337381 | None:intergenic | 40.0% |
| ! | ATGTTTCAGAGAAAGTGCAG+TGG | - | chr5_2:2337970-2337989 | Msa0748970:intron | 40.0% |
| ! | TGTTTCAGAGAAAGTGCAGT+GGG | - | chr5_2:2337971-2337990 | Msa0748970:intron | 40.0% |
| TAATCACTAACCTCTCCTTG+CGG | + | chr5_2:2338019-2338038 | None:intergenic | 40.0% | |
| AAACGACCTACAATTTGGGA+TGG | + | chr5_2:2338317-2338336 | None:intergenic | 40.0% | |
| ! | TCCCAAATTGTAGGTCGTTT+TGG | - | chr5_2:2338317-2338336 | Msa0748970:intron | 40.0% |
| CCCAAAACGACCTACAATTT+GGG | + | chr5_2:2338321-2338340 | None:intergenic | 40.0% | |
| !! | CCCAAATTGTAGGTCGTTTT+GGG | - | chr5_2:2338318-2338337 | Msa0748970:intron | 40.0% |
| TCCCAAAGGGACATACAATT+TGG | - | chr5_2:2338556-2338575 | Msa0748970:CDS | 40.0% | |
| CCCAAATTGTATGTCCCTTT+GGG | + | chr5_2:2338560-2338579 | None:intergenic | 40.0% | |
| CCCAAAGGGACATACAATTT+GGG | - | chr5_2:2338557-2338576 | Msa0748970:CDS | 40.0% | |
| TCCCAAATTGTATGTCCCTT+TGG | + | chr5_2:2338561-2338580 | None:intergenic | 40.0% | |
| AAGGGACATACAATTTGGGA+CGG | - | chr5_2:2338561-2338580 | Msa0748970:CDS | 40.0% | |
| GCGAATGCAGTTTCTTTAGT+TGG | - | chr5_2:2338657-2338676 | Msa0748970:intron | 40.0% | |
| TAAGGACAGAGATGAAGATC+AGG | - | chr5_2:2338709-2338728 | Msa0748970:intron | 40.0% | |
| CAACCAAATAAAGGCTAGTG+AGG | - | chr5_2:2339022-2339041 | Msa0748970:intron | 40.0% | |
| !! | TAGCCTCACTAGCCTTTATT+TGG | + | chr5_2:2339028-2339047 | None:intergenic | 40.0% |
| ! | TGTTTGGGTGTGTACTGTTT+TGG | - | chr5_2:2339402-2339421 | Msa0748970:intron | 40.0% |
| TAAGCGTGAAAGCGAAAGTT+TGG | + | chr5_2:2339614-2339633 | None:intergenic | 40.0% | |
| TCACTTCGGTCATCACAGAT+AGG | + | chr5_2:2337323-2337342 | None:intergenic | 45.0% | |
| CTGGAAAACTGCTGTGAGTT+TGG | - | chr5_2:2337367-2337386 | Msa0748970:intron | 45.0% | |
| GGCAACAGGTGTAAGCTATA+AGG | - | chr5_2:2337992-2338011 | Msa0748970:intron | 45.0% | |
| TGTAAGCTATAAGGACCGCA+AGG | - | chr5_2:2338001-2338020 | Msa0748970:intron | 45.0% | |
| TTCCCTCCATCCCAAATTGT+AGG | - | chr5_2:2338308-2338327 | Msa0748970:intron | 45.0% | |
| ! | GACCTACAATTTGGGATGGA+GGG | + | chr5_2:2338313-2338332 | None:intergenic | 45.0% |
| GCCCAAAACGACCTACAATT+TGG | + | chr5_2:2338322-2338341 | None:intergenic | 45.0% | |
| ! | GACATACAATTTGGGACGGA+GGG | - | chr5_2:2338565-2338584 | Msa0748970:CDS | 45.0% |
| !! | TATGGCTTCTGGGATAATCC+TGG | - | chr5_2:2338854-2338873 | Msa0748970:intron | 45.0% |
| AAGGCTAGTGAGGCTAATGT+AGG | - | chr5_2:2339032-2339051 | Msa0748970:intron | 45.0% | |
| GTGGGCATTTAACGTTTGTG+TGG | - | chr5_2:2339474-2339493 | Msa0748970:intron | 45.0% | |
| AACGTTTGTGTGGTCCTACT+TGG | - | chr5_2:2339484-2339503 | Msa0748970:intron | 45.0% | |
| GCTCTTGGGGAATCTTGCTT+CGG | + | chr5_2:2336851-2336870 | None:intergenic | 50.0% | |
| ! | GGCAGTTGATGCGTAACAGT+TGG | + | chr5_2:2338186-2338205 | None:intergenic | 50.0% |
| ! | CGACCTACAATTTGGGATGG+AGG | + | chr5_2:2338314-2338333 | None:intergenic | 50.0% |
| ! | GGACATACAATTTGGGACGG+AGG | - | chr5_2:2338564-2338583 | Msa0748970:CDS | 50.0% |
| ! | GAGAAAGTGCAGTGGGCAAC+AGG | - | chr5_2:2337978-2337997 | Msa0748970:intron | 55.0% |
| GCTATAAGGACCGCAAGGAG+AGG | - | chr5_2:2338006-2338025 | Msa0748970:intron | 55.0% | |
| TCATCGTCAGCCTGCCACTA+AGG | + | chr5_2:2339243-2339262 | None:intergenic | 55.0% | |
| GTGGCAGGCTGACGATGATC+AGG | - | chr5_2:2339245-2339264 | Msa0748970:intron | 60.0% | |
| CAGGCTGACGATGATCAGGC+TGG | - | chr5_2:2339249-2339268 | Msa0748970:intron | 60.0% | |
| GCTGGATCCAGTGCGCAATG+AGG | - | chr5_2:2339267-2339286 | Msa0748970:intron | 60.0% | |
| GTGCGTACCTCATTGCGCAC+TGG | + | chr5_2:2339277-2339296 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 2336788 | 2339729 | 2336788 | ID=Msa0748970;Name=Msa0748970 |
| chr5_2 | mRNA | 2336788 | 2339729 | 2336788 | ID=Msa0748970-mRNA-1;Parent=Msa0748970;Name=Msa0748970-mRNA-1;_AED=0.20;_eAED=0.20;_QI=43|0.71|0.87|1|0.85|0.75|8|330|210 |
| chr5_2 | exon | 2336788 | 2337116 | 2336788 | ID=Msa0748970-mRNA-1:exon:707;Parent=Msa0748970-mRNA-1 |
| chr5_2 | exon | 2337229 | 2337271 | 2337229 | ID=Msa0748970-mRNA-1:exon:706;Parent=Msa0748970-mRNA-1 |
| chr5_2 | exon | 2337787 | 2337841 | 2337787 | ID=Msa0748970-mRNA-1:exon:705;Parent=Msa0748970-mRNA-1 |
| chr5_2 | exon | 2338490 | 2338626 | 2338490 | ID=Msa0748970-mRNA-1:exon:704;Parent=Msa0748970-mRNA-1 |
| chr5_2 | exon | 2338735 | 2338806 | 2338735 | ID=Msa0748970-mRNA-1:exon:703;Parent=Msa0748970-mRNA-1 |
| chr5_2 | exon | 2338981 | 2339031 | 2338981 | ID=Msa0748970-mRNA-1:exon:702;Parent=Msa0748970-mRNA-1 |
| chr5_2 | exon | 2339138 | 2339260 | 2339138 | ID=Msa0748970-mRNA-1:exon:701;Parent=Msa0748970-mRNA-1 |
| chr5_2 | exon | 2339534 | 2339729 | 2339534 | ID=Msa0748970-mRNA-1:exon:700;Parent=Msa0748970-mRNA-1 |
| chr5_2 | five_prime_UTR | 2339687 | 2339729 | 2339687 | ID=Msa0748970-mRNA-1:five_prime_utr;Parent=Msa0748970-mRNA-1 |
| chr5_2 | CDS | 2339534 | 2339686 | 2339534 | ID=Msa0748970-mRNA-1:cds;Parent=Msa0748970-mRNA-1 |
| chr5_2 | CDS | 2339138 | 2339260 | 2339138 | ID=Msa0748970-mRNA-1:cds;Parent=Msa0748970-mRNA-1 |
| chr5_2 | CDS | 2338981 | 2339031 | 2338981 | ID=Msa0748970-mRNA-1:cds;Parent=Msa0748970-mRNA-1 |
| chr5_2 | CDS | 2338735 | 2338806 | 2338735 | ID=Msa0748970-mRNA-1:cds;Parent=Msa0748970-mRNA-1 |
| chr5_2 | CDS | 2338490 | 2338626 | 2338490 | ID=Msa0748970-mRNA-1:cds;Parent=Msa0748970-mRNA-1 |
| chr5_2 | CDS | 2337787 | 2337841 | 2337787 | ID=Msa0748970-mRNA-1:cds;Parent=Msa0748970-mRNA-1 |
| chr5_2 | CDS | 2337230 | 2337271 | 2337230 | ID=Msa0748970-mRNA-1:cds;Parent=Msa0748970-mRNA-1 |
| chr5_2 | three_prime_UTR | 2337229 | 2337229 | 2337229 | ID=Msa0748970-mRNA-1:three_prime_utr;Parent=Msa0748970-mRNA-1 |
| chr5_2 | three_prime_UTR | 2336788 | 2337116 | 2336788 | ID=Msa0748970-mRNA-1:three_prime_utr;Parent=Msa0748970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
