Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0918800 | AES75692.2 | 73.669 | 338 | 57 | 3 | 1 | 337 | 1 | 307 | 5.33e-162 | 464 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0918800 | sp|Q9H4I3|TRABD_HUMAN | 29.970 | 337 | 189 | 12 | 18 | 324 | 26 | 345 | 7.96e-20 | 92.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0707220 | Msa0918800 | 0.806808 | 6.871422e-50 | -8.615850e-47 |
| Msa0219190 | Msa0918800 | 0.809736 | 1.632754e-50 | -8.615850e-47 |
| Msa0298240 | Msa0918800 | 0.807957 | 3.920969e-50 | -8.615850e-47 |
| Msa0885060 | Msa0918800 | 0.803202 | 3.900748e-49 | -8.615850e-47 |
| Msa0918800 | Msa1420060 | 0.808173 | 3.527596e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0918800 | MtrunA17_Chr6g0470811 | 70.248 | 242 | 39 | 3 | 1 | 213 | 1 | 238 | 5.59e-112 | 325 |
| Msa0918800 | MtrunA17_Chr4g0024091 | 54.452 | 292 | 116 | 4 | 46 | 327 | 115 | 399 | 5.82e-103 | 308 |
| Msa0918800 | MtrunA17_Chr6g0470801 | 76.190 | 84 | 20 | 0 | 244 | 327 | 1 | 84 | 3.15e-31 | 113 |
| Msa0918800 | MtrunA17_Chr1g0203821 | 31.169 | 231 | 128 | 5 | 75 | 278 | 93 | 319 | 5.80e-21 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0918800 | AT1G05270.1 | 48.264 | 288 | 132 | 5 | 48 | 325 | 84 | 364 | 5.07e-85 | 261 |
| Msa0918800 | AT2G32340.1 | 43.051 | 295 | 150 | 5 | 44 | 327 | 66 | 353 | 1.71e-71 | 226 |
| Msa0918800 | AT2G32340.2 | 41.964 | 224 | 115 | 4 | 44 | 256 | 66 | 285 | 6.22e-50 | 168 |
| Msa0918800 | AT5G52030.2 | 28.689 | 244 | 132 | 7 | 75 | 278 | 94 | 335 | 3.72e-15 | 76.3 |
| Msa0918800 | AT5G52030.1 | 35.938 | 128 | 70 | 3 | 163 | 278 | 64 | 191 | 7.09e-13 | 68.2 |
Find 119 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAAGGAATCAATAATTT+TGG | 0.101087 | 6_2:+47817394 | None:intergenic |
| TGACGCCTTCGTTCTGTTTC+CGG | 0.172967 | 6_2:+47818719 | None:intergenic |
| TCAATGAGGGATATGGTTTC+AGG | 0.218559 | 6_2:-47814636 | Msa0918800:three_prime_UTR |
| TCTATGACAATCTTATAATA+TGG | 0.226123 | 6_2:-47817342 | Msa0918800:CDS |
| GCCTCTTCAGGGTTATTTAA+TGG | 0.239017 | 6_2:-47817221 | Msa0918800:intron |
| AAAATTATCCTAACCTCTAT+AGG | 0.246254 | 6_2:+47817599 | None:intergenic |
| AGTTAGTGCCAGCTGTTAAT+TGG | 0.292496 | 6_2:-47814455 | Msa0918800:three_prime_UTR |
| TTGGGAGTATCTGCAGCTTT+TGG | 0.294468 | 6_2:-47814822 | Msa0918800:CDS |
| CTAACCAACACTGAATAATT+AGG | 0.302375 | 6_2:+47814700 | None:intergenic |
| CCAACTGTCTTGCGATTCTA+TGG | 0.313074 | 6_2:-47818660 | Msa0918800:CDS |
| ATGTTTGTCAATGAGGGATA+TGG | 0.314031 | 6_2:-47814643 | Msa0918800:three_prime_UTR |
| ATTGTGGGTATTGTTGTGGC+TGG | 0.316445 | 6_2:-47815290 | Msa0918800:CDS |
| TTATCAGATCCAGGAGATTC+AGG | 0.320909 | 6_2:-47815369 | Msa0918800:intron |
| ACTGCAGAAGCAATTATTCT+TGG | 0.325175 | 6_2:-47814730 | Msa0918800:three_prime_UTR |
| TTCGTTCTGTTTCCGGTGAC+TGG | 0.347292 | 6_2:+47818726 | None:intergenic |
| CTAATTATTCAGTGTTGGTT+AGG | 0.356773 | 6_2:-47814699 | Msa0918800:three_prime_UTR |
| CATCACAGGGATAGCCGGTT+TGG | 0.357458 | 6_2:+47815325 | None:intergenic |
| GAATGTTCACCAACCTTGAT+AGG | 0.361946 | 6_2:+47815694 | None:intergenic |
| TTGTGGGTATTGTTGTGGCT+GGG | 0.371396 | 6_2:-47815289 | Msa0918800:CDS |
| AAATTATCCTAACCTCTATA+GGG | 0.375807 | 6_2:+47817600 | None:intergenic |
| AGCTGGCACTAACTACTATA+TGG | 0.383488 | 6_2:+47814464 | None:intergenic |
| CGTAGGCGTGGCGTCTATCC+TGG | 0.388420 | 6_2:-47817689 | Msa0918800:CDS |
| TGGCACTCTTCATGGCAATA+AGG | 0.394809 | 6_2:-47818606 | Msa0918800:intron |
| AGAACAGTTGTTGCTGTTGT+TGG | 0.398476 | 6_2:-47815757 | Msa0918800:CDS |
| TATAAAGAAGTAATCAAGTA+TGG | 0.403903 | 6_2:-47817647 | Msa0918800:CDS |
| TACATCGTTGGCACTCTTCA+TGG | 0.406285 | 6_2:-47818614 | Msa0918800:CDS |
| TCCTGGTGCTGAGTTTCGTT+CGG | 0.406787 | 6_2:-47817672 | Msa0918800:CDS |
| ATCACAGGGATAGCCGGTTT+GGG | 0.412121 | 6_2:+47815326 | None:intergenic |
| CTGTTTCCGGTGACTGGTCT+CGG | 0.418623 | 6_2:+47818732 | None:intergenic |
| TAACTTATTATCAGTTAACT+TGG | 0.427397 | 6_2:-47814573 | Msa0918800:three_prime_UTR |
| ATGCACCAAGGTCTCCATTA+CGG | 0.430477 | 6_2:+47817180 | None:intergenic |
| TATTATAAGATTGTCATAGA+AGG | 0.441027 | 6_2:+47817345 | None:intergenic |
| GGGATAGCCGGTTTGGGAGG+TGG | 0.445142 | 6_2:+47815332 | None:intergenic |
| CTATGACAATCTTATAATAT+GGG | 0.448524 | 6_2:-47817341 | Msa0918800:intron |
| TGGTTTCAGGTTCTGTTCTG+TGG | 0.451137 | 6_2:-47814623 | Msa0918800:three_prime_UTR |
| GACAATTCCACCTCCCAAAC+CGG | 0.452327 | 6_2:-47815339 | Msa0918800:CDS |
| GTTGGCAAGGGGCATCTAGA+AGG | 0.454720 | 6_2:-47815739 | Msa0918800:CDS |
| GGTTTCAGGTTCTGTTCTGT+GGG | 0.461987 | 6_2:-47814622 | Msa0918800:three_prime_UTR |
| TCTCGAGATCCTGAATCTCC+TGG | 0.465083 | 6_2:+47815360 | None:intergenic |
| CATGGAGTAAGCTGCCACTT+TGG | 0.465660 | 6_2:-47817423 | Msa0918800:CDS |
| TGTGGGTATTGTTGTGGCTG+GGG | 0.467380 | 6_2:-47815288 | Msa0918800:intron |
| TAAGAGATTGCCAACCGTAA+TGG | 0.477761 | 6_2:-47817194 | Msa0918800:CDS |
| TCGGCAGAAGGCATCGGAGG+TGG | 0.480049 | 6_2:+47818751 | None:intergenic |
| GCATGGAGGTGGATGTTGTT+GGG | 0.481246 | 6_2:+47818786 | None:intergenic |
| CATTTCAATCATATCTTCCA+TGG | 0.482278 | 6_2:+47817927 | None:intergenic |
| CGGTGACTGGTCTCGGCAGA+AGG | 0.486439 | 6_2:+47818739 | None:intergenic |
| AAAGAAGCTGAGTAAGTGCT+TGG | 0.489813 | 6_2:+47817370 | None:intergenic |
| GGCATGGAGGTGGATGTTGT+TGG | 0.490076 | 6_2:+47818785 | None:intergenic |
| TGCAATTGTGGGTATTGTTG+TGG | 0.492748 | 6_2:-47815294 | Msa0918800:CDS |
| ACTCGGTGATCGCCCTATAG+AGG | 0.500297 | 6_2:-47817612 | Msa0918800:intron |
| GCCGTTGTTGTTTGAGCACA+AGG | 0.501845 | 6_2:-47818823 | Msa0918800:CDS |
| TTCAGGTTCTGTTCTGTGGG+AGG | 0.505816 | 6_2:-47814619 | Msa0918800:three_prime_UTR |
| AGTTGTTGCTGTTGTTGGCA+AGG | 0.511925 | 6_2:-47815752 | Msa0918800:CDS |
| CCATAGAATCGCAAGACAGT+TGG | 0.513748 | 6_2:+47818660 | None:intergenic |
| CTCGCCATGTTTGTCAATGA+GGG | 0.515364 | 6_2:-47814649 | Msa0918800:three_prime_UTR |
| TCGAATACTTATCAGCTGGT+TGG | 0.515910 | 6_2:-47817881 | Msa0918800:CDS |
| ATTCTCATCACAGGGATAGC+CGG | 0.518049 | 6_2:+47815320 | None:intergenic |
| TCTCGCCATGTTTGTCAATG+AGG | 0.525264 | 6_2:-47814650 | Msa0918800:three_prime_UTR |
| CGGCTTCTTAACACATTCAT+CGG | 0.525532 | 6_2:+47818842 | None:intergenic |
| AACAGAACGAAGGCGTCAGT+TGG | 0.527752 | 6_2:-47818714 | Msa0918800:CDS |
| AAATTGGAAGCAACCTATCA+AGG | 0.528142 | 6_2:-47815707 | Msa0918800:intron |
| ATGAGAATCTTTGCAATTGT+GGG | 0.529775 | 6_2:-47815305 | Msa0918800:CDS |
| AACTTATTATCAGTTAACTT+GGG | 0.530095 | 6_2:-47814572 | Msa0918800:three_prime_UTR |
| TTAACCTAATTATTCAGTGT+TGG | 0.536809 | 6_2:-47814704 | Msa0918800:three_prime_UTR |
| GTCTTGCGATTCTATGGCAA+AGG | 0.537632 | 6_2:-47818654 | Msa0918800:CDS |
| CGAGAATCGAGGCATGGAGG+TGG | 0.542362 | 6_2:+47818775 | None:intergenic |
| ATTGCAAAGATTCTCATCAC+AGG | 0.546781 | 6_2:+47815311 | None:intergenic |
| GTTGTTGCTGTTGTTGGCAA+GGG | 0.548999 | 6_2:-47815751 | Msa0918800:CDS |
| GCCAACCGTAATGGAGACCT+TGG | 0.559516 | 6_2:-47817185 | Msa0918800:CDS |
| GTTGTTTGAGCACAAGGTTG+AGG | 0.559843 | 6_2:-47818817 | Msa0918800:CDS |
| AGATATGATTGAAATGAGGA+AGG | 0.559891 | 6_2:-47817920 | Msa0918800:CDS |
| CTGGTCTCGGCAGAAGGCAT+CGG | 0.563568 | 6_2:+47818745 | None:intergenic |
| GGAATCAAGCAAACAAGTTG+AGG | 0.564066 | 6_2:-47818247 | Msa0918800:CDS |
| TTTGAGCACAAGGTTGAGGA+AGG | 0.564577 | 6_2:-47818813 | Msa0918800:CDS |
| TCTTCCTACCAATTAACAGC+TGG | 0.564918 | 6_2:+47814447 | None:intergenic |
| TCATCTATATATAGAAGTCA+TGG | 0.570583 | 6_2:+47814406 | None:intergenic |
| GTCTCGGCAGAAGGCATCGG+AGG | 0.572571 | 6_2:+47818748 | None:intergenic |
| TTGCCACGTTTAATAATGTG+TGG | 0.573778 | 6_2:+47815788 | None:intergenic |
| AGTTAACTGATAATAAGTTA+CGG | 0.574973 | 6_2:+47814576 | None:intergenic |
| AGTGCCAGCTGTTAATTGGT+AGG | 0.577683 | 6_2:-47814451 | Msa0918800:three_prime_UTR |
| TATGGTGGCGTAGTGGTACT+CGG | 0.585418 | 6_2:-47817629 | Msa0918800:CDS |
| GTTTGCGACGTCTACATCGT+TGG | 0.585546 | 6_2:-47818626 | Msa0918800:CDS |
| TCTTGCGATTCTATGGCAAA+GGG | 0.585992 | 6_2:-47818653 | Msa0918800:CDS |
| ACCAAGGTCTCCATTACGGT+TGG | 0.589814 | 6_2:+47817184 | None:intergenic |
| CAGGATAGACGCCACGCCTA+CGG | 0.592839 | 6_2:+47817690 | None:intergenic |
| CCTTGGTGCATGAAAGAGAT+CGG | 0.593306 | 6_2:-47817168 | Msa0918800:intron |
| GAGTAAGTGCTTGGAAAACA+AGG | 0.594211 | 6_2:+47817379 | None:intergenic |
| ACAGGGATAGCCGGTTTGGG+AGG | 0.597003 | 6_2:+47815329 | None:intergenic |
| TGGAAGATATGATTGAAATG+AGG | 0.597212 | 6_2:-47817924 | Msa0918800:CDS |
| GATGAGAATCTTTGCAATTG+TGG | 0.597834 | 6_2:-47815306 | Msa0918800:CDS |
| TATCAGCTGGTTGGATGCCG+AGG | 0.600173 | 6_2:-47817872 | Msa0918800:CDS |
| ATCACTTCTTCACTGCTCAA+AGG | 0.600598 | 6_2:-47819685 | Msa0918800:intron |
| TTGTTGCTGTTGTTGGCAAG+GGG | 0.603068 | 6_2:-47815750 | Msa0918800:CDS |
| GCCGAACGAAACTCAGCACC+AGG | 0.605283 | 6_2:+47817671 | None:intergenic |
| TGGCAACCTTCATCTCATCA+AGG | 0.615139 | 6_2:+47818070 | None:intergenic |
| TTTCTTATAGGCACTTACCA+TGG | 0.616126 | 6_2:-47817944 | Msa0918800:intron |
| AAAAGTCGATACTATACACT+AGG | 0.618568 | 6_2:+47814780 | None:intergenic |
| TCAAACATTGAAACATGCCT+CGG | 0.619394 | 6_2:+47817855 | None:intergenic |
| TGCCACGTTTAATAATGTGT+GGG | 0.621215 | 6_2:+47815789 | None:intergenic |
| CTTCTGCCGAGACCAGTCAC+CGG | 0.626773 | 6_2:-47818738 | Msa0918800:CDS |
| TGACAGATTGACCGTAGGCG+TGG | 0.631419 | 6_2:-47817701 | Msa0918800:intron |
| TGTGAAATTTCTGAAACCAG+AGG | 0.636118 | 6_2:-47818220 | Msa0918800:intron |
| AAAGAAGTAATCAAGTATGG+TGG | 0.638938 | 6_2:-47817644 | Msa0918800:CDS |
| GGTGGTCGAGAATCGAGGCA+TGG | 0.643159 | 6_2:+47818769 | None:intergenic |
| GGAGTTGTGCTCAGATCGTG+TGG | 0.649142 | 6_2:-47818103 | Msa0918800:CDS |
| ATATCCCTCATTGACAAACA+TGG | 0.649450 | 6_2:+47814645 | None:intergenic |
| CTTCTTAACACATTCATCGG+TGG | 0.649608 | 6_2:+47818845 | None:intergenic |
| TACACTATTACAATAGTGTG+TGG | 0.650819 | 6_2:-47814508 | Msa0918800:three_prime_UTR |
| CCGATCTCTTTCATGCACCA+AGG | 0.654017 | 6_2:+47817168 | None:intergenic |
| TCGGAGGTGGTCGAGAATCG+AGG | 0.654205 | 6_2:+47818764 | None:intergenic |
| TTGCAAAGATTCTCATCACA+GGG | 0.654839 | 6_2:+47815312 | None:intergenic |
| TGCGATTCTATGGCAAAGGG+AGG | 0.655127 | 6_2:-47818650 | Msa0918800:CDS |
| AATCAAGTATGGTGGCGTAG+TGG | 0.659789 | 6_2:-47817636 | Msa0918800:CDS |
| ACCTTGTGCTCAAACAACAA+CGG | 0.659970 | 6_2:+47818822 | None:intergenic |
| GCGTCAGTTGGAGTTACCGA+AGG | 0.666568 | 6_2:-47818702 | Msa0918800:CDS |
| GTCCCACACATTATTAAACG+TGG | 0.672434 | 6_2:-47815791 | Msa0918800:CDS |
| GGTCGAGAATCGAGGCATGG+AGG | 0.697941 | 6_2:+47818772 | None:intergenic |
| ATATCTGACAGATTGACCGT+AGG | 0.704601 | 6_2:-47817706 | Msa0918800:intron |
| AGTCACCGGAAACAGAACGA+AGG | 0.738077 | 6_2:-47818724 | Msa0918800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATCTTAAAAAAATACA+AGG | - | chr6_2:47815064-47815083 | Msa0918800:intron | 10.0% |
| !! | TTTATCTTAAAAAAATACAA+GGG | - | chr6_2:47815065-47815084 | Msa0918800:intron | 10.0% |
| !!! | TAATTTCTTTAATTTCTTAT+AGG | - | chr6_2:47816177-47816196 | Msa0918800:intron | 10.0% |
| !! | TCAAAGATAATCTTATAAAA+TGG | - | chr6_2:47815738-47815757 | Msa0918800:CDS | 15.0% |
| !! | CAAAGATAATCTTATAAAAT+GGG | - | chr6_2:47815739-47815758 | Msa0918800:CDS | 15.0% |
| !!! | TTTTATTTCATTTGTTTTTG+AGG | - | chr6_2:47816555-47816574 | Msa0918800:intron | 15.0% |
| !! | AAAAAATAAAGGAAAAAGAT+TGG | + | chr6_2:47817367-47817386 | None:intergenic | 15.0% |
| !! | CTCTTCAAAAAAAAAAATAA+AGG | + | chr6_2:47817378-47817397 | None:intergenic | 15.0% |
| !!! | CTTTATTTTTTTTTTTGAAG+AGG | - | chr6_2:47817376-47817395 | Msa0918800:CDS | 15.0% |
| !! | GAAACTATATTGAAATAAAA+AGG | - | chr6_2:47817404-47817423 | Msa0918800:CDS | 15.0% |
| !!! | ATTTGAGATTTGACAAAAAA+TGG | + | chr6_2:47814507-47814526 | None:intergenic | 20.0% |
| !! | ACCAGAAAATAAATCAAATT+AGG | - | chr6_2:47814929-47814948 | Msa0918800:intron | 20.0% |
| !!! | TCCTAATTTGATTTATTTTC+TGG | + | chr6_2:47814933-47814952 | None:intergenic | 20.0% |
| !! | GAAAATAAATCAAATTAGGA+TGG | - | chr6_2:47814933-47814952 | Msa0918800:intron | 20.0% |
| !! | TCCATCTAAAAACTTAAAAA+AGG | - | chr6_2:47815561-47815580 | Msa0918800:intron | 20.0% |
| !! | CCATCTAAAAACTTAAAAAA+GGG | - | chr6_2:47815562-47815581 | Msa0918800:intron | 20.0% |
| !! | TAAAAAAGGGTTTATGTTTA+TGG | - | chr6_2:47815575-47815594 | Msa0918800:intron | 20.0% |
| !! | AAAATGTACAAAGAAAACAA+GGG | + | chr6_2:47815972-47815991 | None:intergenic | 20.0% |
| !! | AAAAATGTACAAAGAAAACA+AGG | + | chr6_2:47815973-47815992 | None:intergenic | 20.0% |
| !!! | TTTGTACATTTTTTAATGCT+TGG | - | chr6_2:47815980-47815999 | Msa0918800:intron | 20.0% |
| !! | TAATAGTTGACAAATGTAAT+AGG | + | chr6_2:47816320-47816339 | None:intergenic | 20.0% |
| !! | TATAAAGAAGTAATCAAGTA+TGG | - | chr6_2:47816486-47816505 | Msa0918800:intron | 20.0% |
| !! | AGATTACATTAAAAAGAACA+TGG | - | chr6_2:47816692-47816711 | Msa0918800:intron | 20.0% |
| !!! | AACAAGGAATCAATAATTTT+GGG | + | chr6_2:47816741-47816760 | None:intergenic | 20.0% |
| !!! | AAACAAGGAATCAATAATTT+TGG | + | chr6_2:47816742-47816761 | None:intergenic | 20.0% |
| !! | TATTATAAGATTGTCATAGA+AGG | + | chr6_2:47816791-47816810 | None:intergenic | 20.0% |
| !! | TCTATGACAATCTTATAATA+TGG | - | chr6_2:47816791-47816810 | Msa0918800:intron | 20.0% |
| !! | CTATGACAATCTTATAATAT+GGG | - | chr6_2:47816792-47816811 | Msa0918800:intron | 20.0% |
| !! | CATTTATATTTCCAATACTT+TGG | + | chr6_2:47817064-47817083 | None:intergenic | 20.0% |
| !!! | AACTTTTCAAACTATAGTAA+TGG | - | chr6_2:47817131-47817150 | Msa0918800:intron | 20.0% |
| !! | AATTAAGTGCAATATTAAGT+AGG | + | chr6_2:47817200-47817219 | None:intergenic | 20.0% |
| !!! | TGTATTAAGTTGATACATAA+AGG | + | chr6_2:47817573-47817592 | None:intergenic | 20.0% |
| !! | GATAAACATATGTATTCTTT+AGG | + | chr6_2:47817687-47817706 | None:intergenic | 20.0% |
| !! | AAAGAATACATATGTTTATC+CGG | - | chr6_2:47817687-47817706 | Msa0918800:CDS | 20.0% |
| !! | CTTGTAACTTATAAATTCTA+AGG | - | chr6_2:47818102-47818121 | Msa0918800:CDS | 20.0% |
| !!! | TTGTCTTTTCTTTTTCAAAA+TGG | - | chr6_2:47818654-47818673 | Msa0918800:CDS | 20.0% |
| !! | ATACCTCTTCAAAATAAAAA+TGG | - | chr6_2:47818684-47818703 | Msa0918800:CDS | 20.0% |
| !!! | ATACCATTTTTATTTTGAAG+AGG | + | chr6_2:47818690-47818709 | None:intergenic | 20.0% |
| !! | TGATAATAGTAAGGAAAATT+GGG | + | chr6_2:47818750-47818769 | None:intergenic | 20.0% |
| !! | CTAACAATATGATAAAAATC+AGG | + | chr6_2:47818941-47818960 | None:intergenic | 20.0% |
| !!! | CTGATTTTTATCATATTGTT+AGG | - | chr6_2:47818939-47818958 | Msa0918800:intron | 20.0% |
| !! | AATTGAAGACAACAAATAAA+GGG | + | chr6_2:47819066-47819085 | None:intergenic | 20.0% |
| !! | AAATTGAAGACAACAAATAA+AGG | + | chr6_2:47819067-47819086 | None:intergenic | 20.0% |
| !!! | TTCTAACACAATTTCTATTT+TGG | - | chr6_2:47819276-47819295 | Msa0918800:intron | 20.0% |
| !! | AGTTAACTGATAATAAGTTA+CGG | + | chr6_2:47819560-47819579 | None:intergenic | 20.0% |
| !! | TAACTTATTATCAGTTAACT+TGG | - | chr6_2:47819560-47819579 | Msa0918800:intron | 20.0% |
| !! | AACTTATTATCAGTTAACTT+GGG | - | chr6_2:47819561-47819580 | Msa0918800:intron | 20.0% |
| !! | AACAATAGTTTATGCGATTT+TGG | + | chr6_2:47814538-47814557 | None:intergenic | 25.0% |
| !!! | CCCTTTTTTAAGTTTTTAGA+TGG | + | chr6_2:47815565-47815584 | None:intergenic | 25.0% |
| ! | ATCATTGAGATTAAGAAAGT+TGG | - | chr6_2:47815690-47815709 | Msa0918800:intron | 25.0% |
| ! | GGATAAAGATAAAACAAAAC+AGG | - | chr6_2:47815760-47815779 | Msa0918800:CDS | 25.0% |
| !! | ACAAAACAGGTCTTATATTT+AGG | - | chr6_2:47815773-47815792 | Msa0918800:CDS | 25.0% |
| ! | TAAAATACGAACTAAATGAG+TGG | + | chr6_2:47816086-47816105 | None:intergenic | 25.0% |
| ! | AATAGCATTCTTGAATAAGA+TGG | + | chr6_2:47816353-47816372 | None:intergenic | 25.0% |
| ! | AAATTATCCTAACCTCTATA+GGG | + | chr6_2:47816536-47816555 | None:intergenic | 25.0% |
| ! | AAAATTATCCTAACCTCTAT+AGG | + | chr6_2:47816537-47816556 | None:intergenic | 25.0% |
| !!! | CTAATATGGGTTTTATTTTC+CGG | - | chr6_2:47816887-47816906 | Msa0918800:intron | 25.0% |
| !! | TTTTACCATTACCAAAGTAT+TGG | - | chr6_2:47817050-47817069 | Msa0918800:intron | 25.0% |
| ! | TATTTCCAATACTTTGGTAA+TGG | + | chr6_2:47817058-47817077 | None:intergenic | 25.0% |
| ! | TGATGTGTATATCAAACAAT+TGG | + | chr6_2:47817110-47817129 | None:intergenic | 25.0% |
| !! | TATAGTAATGGAGACAAAAA+AGG | - | chr6_2:47817143-47817162 | Msa0918800:intron | 25.0% |
| !!! | TATTAGAGGGTTTTAGTTTT+AGG | + | chr6_2:47817288-47817307 | None:intergenic | 25.0% |
| ! | AAACTAAAACCCTCTAATAT+AGG | - | chr6_2:47817289-47817308 | Msa0918800:intron | 25.0% |
| ! | AACTAAAACCCTCTAATATA+GGG | - | chr6_2:47817290-47817309 | Msa0918800:intron | 25.0% |
| !!! | GTCAGAAAATGTTTTAAAAG+AGG | - | chr6_2:47817315-47817334 | Msa0918800:intron | 25.0% |
| !!! | TTTTAAAAGAGGATTTTGTG+AGG | - | chr6_2:47817326-47817345 | Msa0918800:intron | 25.0% |
| ! | GATACATAAAGGAAAAAGAT+TGG | + | chr6_2:47817562-47817581 | None:intergenic | 25.0% |
| ! | TCTATAAAATCATTGCAGTA+GGG | + | chr6_2:47817856-47817875 | None:intergenic | 25.0% |
| ! | TAACAGTTTCAAACCATATT+TGG | - | chr6_2:47818044-47818063 | Msa0918800:intron | 25.0% |
| ! | AGGCATATATATCAAAAGAA+AGG | + | chr6_2:47818074-47818093 | None:intergenic | 25.0% |
| !! | TCTTTTGATATATATGCCTA+TGG | - | chr6_2:47818075-47818094 | Msa0918800:intron | 25.0% |
| ! | AAAAACAACGTATGATATGT+AGG | + | chr6_2:47818156-47818175 | None:intergenic | 25.0% |
| ! | ATAACTAGATAAGAGCAAAT+AGG | - | chr6_2:47818210-47818229 | Msa0918800:intron | 25.0% |
| ! | TACTAAACAAAGACTTTGTT+TGG | + | chr6_2:47818241-47818260 | None:intergenic | 25.0% |
| ! | TAGAAGGAATGAAGAAAAAT+TGG | - | chr6_2:47818410-47818429 | Msa0918800:intron | 25.0% |
| !! | ATACTTTAGAAGTGCAAAAA+GGG | + | chr6_2:47818497-47818516 | None:intergenic | 25.0% |
| !! | AATACTTTAGAAGTGCAAAA+AGG | + | chr6_2:47818498-47818517 | None:intergenic | 25.0% |
| !!! | TTTGCACTTCTAAAGTATTT+AGG | - | chr6_2:47818499-47818518 | Msa0918800:intron | 25.0% |
| ! | GATAATAGTAAGGAAAATTG+GGG | + | chr6_2:47818749-47818768 | None:intergenic | 25.0% |
| ! | CTGATAATAGTAAGGAAAAT+TGG | + | chr6_2:47818751-47818770 | None:intergenic | 25.0% |
| !! | ATGATAGATGGTTGATATTA+TGG | + | chr6_2:47818874-47818893 | None:intergenic | 25.0% |
| ! | TCTTTGCATTTAATGATAGA+TGG | + | chr6_2:47818886-47818905 | None:intergenic | 25.0% |
| ! | TTACTAATTGTATCTCAAAC+AGG | + | chr6_2:47818970-47818989 | None:intergenic | 25.0% |
| !!! | ACACATTTTTTCTCTATTCT+AGG | - | chr6_2:47819216-47819235 | Msa0918800:intron | 25.0% |
| !!! | CACATTTTTTCTCTATTCTA+GGG | - | chr6_2:47819217-47819236 | Msa0918800:intron | 25.0% |
| !!! | TATAGTATCGACTTTTTGTT+TGG | - | chr6_2:47819360-47819379 | Msa0918800:intron | 25.0% |
| !!! | ATAGTATCGACTTTTTGTTT+GGG | - | chr6_2:47819361-47819380 | Msa0918800:intron | 25.0% |
| ! | TTAACCTAATTATTCAGTGT+TGG | - | chr6_2:47819429-47819448 | Msa0918800:intron | 25.0% |
| ! | TCATCTATATATAGAAGTCA+TGG | + | chr6_2:47819730-47819749 | None:intergenic | 25.0% |
| ATTTCTGTTCTTTCACTTCA+AGG | - | chr6_2:47814695-47814714 | Msa0918800:three_prime_UTR | 30.0% | |
| AGTAGCATGTAATCAGAAAA+AGG | + | chr6_2:47814858-47814877 | None:intergenic | 30.0% | |
| ATCTCTCTCTGATTGTAAAA+GGG | + | chr6_2:47814967-47814986 | None:intergenic | 30.0% | |
| TATCTCTCTCTGATTGTAAA+AGG | + | chr6_2:47814968-47814987 | None:intergenic | 30.0% | |
| TTATGTGTGTTAAACTGCAT+GGG | - | chr6_2:47815018-47815037 | Msa0918800:intron | 30.0% | |
| TTGTCAAATCTTGCAAAGAT+AGG | - | chr6_2:47815167-47815186 | Msa0918800:intron | 30.0% | |
| ! | ATTTAGAGACACAGAAGTAT+TGG | + | chr6_2:47815652-47815671 | None:intergenic | 30.0% |
| !!! | ATTGTTTTGAACTATGTTGC+AGG | - | chr6_2:47815865-47815884 | Msa0918800:intron | 30.0% |
| ATAATGCAATCATGACAACT+AGG | - | chr6_2:47816107-47816126 | Msa0918800:intron | 30.0% | |
| TAATGCAATCATGACAACTA+GGG | - | chr6_2:47816108-47816127 | Msa0918800:intron | 30.0% | |
| CATTTCAATCATATCTTCCA+TGG | + | chr6_2:47816209-47816228 | None:intergenic | 30.0% | |
| TGGAAGATATGATTGAAATG+AGG | - | chr6_2:47816209-47816228 | Msa0918800:intron | 30.0% | |
| AGATATGATTGAAATGAGGA+AGG | - | chr6_2:47816213-47816232 | Msa0918800:intron | 30.0% | |
| !! | TTTTTCGAATACTTATCAGC+TGG | - | chr6_2:47816248-47816267 | Msa0918800:intron | 30.0% |
| AGATATTCAAGTGGAAGAAA+TGG | + | chr6_2:47816413-47816432 | None:intergenic | 30.0% | |
| AAAGAAGTAATCAAGTATGG+TGG | - | chr6_2:47816489-47816508 | Msa0918800:intron | 30.0% | |
| ! | AAAAATTCAGTGGCTTTTCA+TGG | + | chr6_2:47816597-47816616 | None:intergenic | 30.0% |
| AGTTGCAAACATAATCTCAT+AGG | + | chr6_2:47816634-47816653 | None:intergenic | 30.0% | |
| ! | AACTTTGTCACTGTATTGAT+TGG | - | chr6_2:47816650-47816669 | Msa0918800:intron | 30.0% |
| CGGAAAATAAAACCCATATT+AGG | + | chr6_2:47816889-47816908 | None:intergenic | 30.0% | |
| ! | AGATCGGTAAGTTCTAATAT+TGG | - | chr6_2:47816981-47817000 | Msa0918800:intron | 30.0% |
| AAAGGAAAGAGAAAATTGAG+AGG | - | chr6_2:47817161-47817180 | Msa0918800:intron | 30.0% | |
| ATATTAAGTAGGAGTGAGAT+AGG | + | chr6_2:47817189-47817208 | None:intergenic | 30.0% | |
| ! | ATTCTTTGTACTCTTGCTTT+TGG | + | chr6_2:47817441-47817460 | None:intergenic | 30.0% |
| ! | TCATCAATTAGGTGTTTTCT+TGG | + | chr6_2:47817510-47817529 | None:intergenic | 30.0% |
| !!! | TTTTGCTGCTTTCATCAATT+AGG | + | chr6_2:47817521-47817540 | None:intergenic | 30.0% |
| AATTGATGAAAGCAGCAAAA+AGG | - | chr6_2:47817521-47817540 | Msa0918800:intron | 30.0% | |
| AATACATATGTTTATCCGGA+GGG | - | chr6_2:47817691-47817710 | Msa0918800:CDS | 30.0% | |
| ! | CTTGAAAAAGGTTATCGTTT+TGG | - | chr6_2:47817729-47817748 | Msa0918800:intron | 30.0% |
| GTATTTGAATTTAGACCTTC+AGG | + | chr6_2:47817779-47817798 | None:intergenic | 30.0% | |
| AGGTCTAAATTCAAATACCT+TGG | - | chr6_2:47817781-47817800 | Msa0918800:intron | 30.0% | |
| GGTCTAAATTCAAATACCTT+GGG | - | chr6_2:47817782-47817801 | Msa0918800:intron | 30.0% | |
| GTCTAAATTCAAATACCTTG+GGG | - | chr6_2:47817783-47817802 | Msa0918800:intron | 30.0% | |
| TCTAAATTCAAATACCTTGG+GGG | - | chr6_2:47817784-47817803 | Msa0918800:intron | 30.0% | |
| CATGTGCTATGAAACAAAAT+AGG | + | chr6_2:47817810-47817829 | None:intergenic | 30.0% | |
| CTCTATAAAATCATTGCAGT+AGG | + | chr6_2:47817857-47817876 | None:intergenic | 30.0% | |
| ! | CTACTGCAATGATTTTATAG+AGG | - | chr6_2:47817855-47817874 | Msa0918800:intron | 30.0% |
| TAATTTCTCGTCATCATTGA+GGG | + | chr6_2:47818026-47818045 | None:intergenic | 30.0% | |
| TTAATTTCTCGTCATCATTG+AGG | + | chr6_2:47818027-47818046 | None:intergenic | 30.0% | |
| AAAGAAAGGTCAACCAAATA+TGG | + | chr6_2:47818060-47818079 | None:intergenic | 30.0% | |
| ATAAGTTACAAGAACACCAT+AGG | + | chr6_2:47818094-47818113 | None:intergenic | 30.0% | |
| AATTTAGATTGCGTCTATCT+AGG | - | chr6_2:47818314-47818333 | Msa0918800:intron | 30.0% | |
| TACAAATCCACTTAAAAAGC+AGG | - | chr6_2:47818538-47818557 | Msa0918800:intron | 30.0% | |
| ATGAGAATCTTTGCAATTGT+GGG | - | chr6_2:47818828-47818847 | Msa0918800:CDS | 30.0% | |
| ACCAATGAAAAGTCAATGAT+GGG | + | chr6_2:47819116-47819135 | None:intergenic | 30.0% | |
| !! | ACTTTTCATTGGTCTATTTC+CGG | - | chr6_2:47819123-47819142 | Msa0918800:intron | 30.0% |
| AAAAGTCGATACTATACACT+AGG | + | chr6_2:47819356-47819375 | None:intergenic | 30.0% | |
| CTAACCAACACTGAATAATT+AGG | + | chr6_2:47819436-47819455 | None:intergenic | 30.0% | |
| !! | CTAATTATTCAGTGTTGGTT+AGG | - | chr6_2:47819434-47819453 | Msa0918800:intron | 30.0% |
| CTAAAATGAAAAAGAAGCTG+TGG | + | chr6_2:47819604-47819623 | None:intergenic | 30.0% | |
| TACACTATTACAATAGTGTG+TGG | - | chr6_2:47819625-47819644 | Msa0918800:intron | 30.0% | |
| TCTCTCTCTGATTGTAAAAG+GGG | + | chr6_2:47814966-47814985 | None:intergenic | 35.0% | |
| GTTATGTGTGTTAAACTGCA+TGG | - | chr6_2:47815017-47815036 | Msa0918800:intron | 35.0% | |
| ! | ACATTTTTCGTGAGTTCCTT+CGG | + | chr6_2:47815450-47815469 | None:intergenic | 35.0% |
| ! | AGAGTGCTTATAATTAGCGA+TGG | - | chr6_2:47815616-47815635 | Msa0918800:intron | 35.0% |
| AGTTGGTTGTGATGTTAATG+TGG | - | chr6_2:47815707-47815726 | Msa0918800:intron | 35.0% | |
| AGAACGAGAGACATTTGATA+TGG | + | chr6_2:47815809-47815828 | None:intergenic | 35.0% | |
| !! | TGTGAAATTTCTGAAACCAG+AGG | - | chr6_2:47815913-47815932 | Msa0918800:intron | 35.0% |
| ! | TCTACTCCAGATTGTTTTCT+TGG | - | chr6_2:47816009-47816028 | Msa0918800:intron | 35.0% |
| ACAACTCCAAGAAAACAATC+TGG | + | chr6_2:47816018-47816037 | None:intergenic | 35.0% | |
| AATGCAATCATGACAACTAG+GGG | - | chr6_2:47816109-47816128 | Msa0918800:intron | 35.0% | |
| TTTCTTATAGGCACTTACCA+TGG | - | chr6_2:47816189-47816208 | Msa0918800:intron | 35.0% | |
| TCAAACATTGAAACATGCCT+CGG | + | chr6_2:47816281-47816300 | None:intergenic | 35.0% | |
| CAATCTGTCAGATATTCAAG+TGG | + | chr6_2:47816422-47816441 | None:intergenic | 35.0% | |
| !! | CCAAGCTCTAAAAAATTCAG+TGG | + | chr6_2:47816607-47816626 | None:intergenic | 35.0% |
| !!! | CCACTGAATTTTTTAGAGCT+TGG | - | chr6_2:47816604-47816623 | Msa0918800:intron | 35.0% |
| TTTGTGCACTTGTCCTAATA+TGG | - | chr6_2:47816873-47816892 | Msa0918800:intron | 35.0% | |
| TTGTGCACTTGTCCTAATAT+GGG | - | chr6_2:47816874-47816893 | Msa0918800:intron | 35.0% | |
| ACCATTAAATAACCCTGAAG+AGG | + | chr6_2:47816916-47816935 | None:intergenic | 35.0% | |
| AAGAGAGTTCAAAGTGAGAT+TGG | + | chr6_2:47817027-47817046 | None:intergenic | 35.0% | |
| ACAACCACAAAAATTACAGC+TGG | + | chr6_2:47817254-47817273 | None:intergenic | 35.0% | |
| TCTGACTTCCCTATATTAGA+GGG | + | chr6_2:47817301-47817320 | None:intergenic | 35.0% | |
| TTCTGACTTCCCTATATTAG+AGG | + | chr6_2:47817302-47817321 | None:intergenic | 35.0% | |
| GGAAAAAGTAAAGAGAGGAA+AGG | + | chr6_2:47817622-47817641 | None:intergenic | 35.0% | |
| TTAGGCTTCGTTTCAGATTT+GGG | + | chr6_2:47817669-47817688 | None:intergenic | 35.0% | |
| TTTAGGCTTCGTTTCAGATT+TGG | + | chr6_2:47817670-47817689 | None:intergenic | 35.0% | |
| GAATACATATGTTTATCCGG+AGG | - | chr6_2:47817690-47817709 | Msa0918800:CDS | 35.0% | |
| ATACATATGTTTATCCGGAG+GGG | - | chr6_2:47817692-47817711 | Msa0918800:CDS | 35.0% | |
| CTTGGATAGCATCTTGAAAA+AGG | - | chr6_2:47817717-47817736 | Msa0918800:intron | 35.0% | |
| TGGGACATCATACTTATTCA+TGG | + | chr6_2:47817927-47817946 | None:intergenic | 35.0% | |
| ATGCCATCACACATATTCAT+GGG | + | chr6_2:47817946-47817965 | None:intergenic | 35.0% | |
| AATGCCATCACACATATTCA+TGG | + | chr6_2:47817947-47817966 | None:intergenic | 35.0% | |
| TGCCACGTTTAATAATGTGT+GGG | + | chr6_2:47818347-47818366 | None:intergenic | 35.0% | |
| TTGCCACGTTTAATAATGTG+TGG | + | chr6_2:47818348-47818367 | None:intergenic | 35.0% | |
| AAATTGGAAGCAACCTATCA+AGG | - | chr6_2:47818426-47818445 | Msa0918800:intron | 35.0% | |
| ! | AGTATTTAGGTCTTTTGTCG+TGG | - | chr6_2:47818512-47818531 | Msa0918800:intron | 35.0% |
| !!! | ATGCTTACCTGCTTTTTAAG+TGG | + | chr6_2:47818548-47818567 | None:intergenic | 35.0% |
| ! | GGGGTCAGTAAATCTTTTAA+TGG | + | chr6_2:47818730-47818749 | None:intergenic | 35.0% |
| TCCTTACTATTATCAGATCC+AGG | - | chr6_2:47818755-47818774 | Msa0918800:CDS | 35.0% | |
| TCCTGGATCTGATAATAGTA+AGG | + | chr6_2:47818759-47818778 | None:intergenic | 35.0% | |
| TTGCAAAGATTCTCATCACA+GGG | + | chr6_2:47818824-47818843 | None:intergenic | 35.0% | |
| ATTGCAAAGATTCTCATCAC+AGG | + | chr6_2:47818825-47818844 | None:intergenic | 35.0% | |
| GATGAGAATCTTTGCAATTG+TGG | - | chr6_2:47818827-47818846 | Msa0918800:CDS | 35.0% | |
| GATGACAATAACTCTACCTA+GGG | + | chr6_2:47818916-47818935 | None:intergenic | 35.0% | |
| AGATGACAATAACTCTACCT+AGG | + | chr6_2:47818917-47818936 | None:intergenic | 35.0% | |
| GACCAATGAAAAGTCAATGA+TGG | + | chr6_2:47819117-47819136 | None:intergenic | 35.0% | |
| !!! | ATTTCTATTTTGGTTCGAGC+AGG | - | chr6_2:47819286-47819305 | Msa0918800:intron | 35.0% |
| ACTGCAGAAGCAATTATTCT+TGG | - | chr6_2:47819403-47819422 | Msa0918800:intron | 35.0% | |
| ATATCCCTCATTGACAAACA+TGG | + | chr6_2:47819491-47819510 | None:intergenic | 35.0% | |
| ATGTTTGTCAATGAGGGATA+TGG | - | chr6_2:47819490-47819509 | Msa0918800:intron | 35.0% | |
| ATCACTTCTTCACTGCTCAA+AGG | - | chr6_2:47814448-47814467 | Msa0918800:three_prime_UTR | 40.0% | |
| !! | TCATACTCTGTTTCTGTTGC+TGG | - | chr6_2:47814481-47814500 | Msa0918800:three_prime_UTR | 40.0% |
| CTCTCTCTGATTGTAAAAGG+GGG | + | chr6_2:47814965-47814984 | None:intergenic | 40.0% | |
| GCACGAGATTGAATCTGTTT+CGG | - | chr6_2:47814995-47815014 | Msa0918800:intron | 40.0% | |
| ! | CTGCATGGGTTACTAGATTA+TGG | - | chr6_2:47815032-47815051 | Msa0918800:intron | 40.0% |
| CTTCTTAACACATTCATCGG+TGG | + | chr6_2:47815291-47815310 | None:intergenic | 40.0% | |
| CGGCTTCTTAACACATTCAT+CGG | + | chr6_2:47815294-47815313 | None:intergenic | 40.0% | |
| ACCTTGTGCTCAAACAACAA+CGG | + | chr6_2:47815314-47815333 | None:intergenic | 40.0% | |
| TCTTGCGATTCTATGGCAAA+GGG | - | chr6_2:47815480-47815499 | Msa0918800:intron | 40.0% | |
| GGAATCAAGCAAACAAGTTG+AGG | - | chr6_2:47815886-47815905 | Msa0918800:intron | 40.0% | |
| CAAAACGACAAAACTACCTC+TGG | + | chr6_2:47815932-47815951 | None:intergenic | 40.0% | |
| !!! | CAGAGGTAGTTTTGTCGTTT+TGG | - | chr6_2:47815930-47815949 | Msa0918800:intron | 40.0% |
| ! | GCTTTTCCTTGATGAGATGA+AGG | - | chr6_2:47816057-47816076 | Msa0918800:intron | 40.0% |
| TCGAATACTTATCAGCTGGT+TGG | - | chr6_2:47816252-47816271 | Msa0918800:intron | 40.0% | |
| TCAAGTGGAAGAAATGGTTC+AGG | + | chr6_2:47816407-47816426 | None:intergenic | 40.0% | |
| ATATCTGACAGATTGACCGT+AGG | - | chr6_2:47816427-47816446 | Msa0918800:intron | 40.0% | |
| !!! | AATTTTGGGATGTGCCAAAG+TGG | + | chr6_2:47816727-47816746 | None:intergenic | 40.0% |
| GAGTAAGTGCTTGGAAAACA+AGG | + | chr6_2:47816757-47816776 | None:intergenic | 40.0% | |
| AAAGAAGCTGAGTAAGTGCT+TGG | + | chr6_2:47816766-47816785 | None:intergenic | 40.0% | |
| GGACAAGTGCACAAACTTAT+CGG | + | chr6_2:47816868-47816887 | None:intergenic | 40.0% | |
| GCCTCTTCAGGGTTATTTAA+TGG | - | chr6_2:47816912-47816931 | Msa0918800:intron | 40.0% | |
| TAAGAGATTGCCAACCGTAA+TGG | - | chr6_2:47816939-47816958 | Msa0918800:intron | 40.0% | |
| GAGTTCAAAGTGAGATTGGA+TGG | + | chr6_2:47817023-47817042 | None:intergenic | 40.0% | |
| ! | GTCACCAGCTGTAATTTTTG+TGG | - | chr6_2:47817247-47817266 | Msa0918800:intron | 40.0% |
| ! | TTTGTTGTAGGAGTTGGCTT+TGG | + | chr6_2:47817479-47817498 | None:intergenic | 40.0% |
| !! | GTAGCTTTTGTTGTAGGAGT+TGG | + | chr6_2:47817485-47817504 | None:intergenic | 40.0% |
| !! | TTGGCTGTAGCTTTTGTTGT+AGG | + | chr6_2:47817491-47817510 | None:intergenic | 40.0% |
| GGGAAGGAAAAAGTAAAGAG+AGG | + | chr6_2:47817627-47817646 | None:intergenic | 40.0% | |
| ! | TGGCATTTTCTGCTTATCCT+AGG | - | chr6_2:47817749-47817768 | Msa0918800:intron | 40.0% |
| TGTCCCATGAATATGTGTGA+TGG | - | chr6_2:47817940-47817959 | Msa0918800:intron | 40.0% | |
| GTCCCACACATTATTAAACG+TGG | - | chr6_2:47818342-47818361 | Msa0918800:intron | 40.0% | |
| ! | AGAACAGTTGTTGCTGTTGT+TGG | - | chr6_2:47818376-47818395 | Msa0918800:intron | 40.0% |
| GAATGTTCACCAACCTTGAT+AGG | + | chr6_2:47818442-47818461 | None:intergenic | 40.0% | |
| TTATCAGATCCAGGAGATTC+AGG | - | chr6_2:47818764-47818783 | Msa0918800:CDS | 40.0% | |
| ! | TGCAATTGTGGGTATTGTTG+TGG | - | chr6_2:47818839-47818858 | Msa0918800:CDS | 40.0% |
| ATGCAAAGAACAACTTCCCT+AGG | - | chr6_2:47818897-47818916 | Msa0918800:intron | 40.0% | |
| ACACAATTGTATCACGACAC+AGG | - | chr6_2:47819029-47819048 | Msa0918800:intron | 40.0% | |
| GACAACAAATAAAGGGTGAG+TGG | + | chr6_2:47819059-47819078 | None:intergenic | 40.0% | |
| ! | TGATGGGCGACAATTATGAA+AGG | + | chr6_2:47819100-47819119 | None:intergenic | 40.0% |
| !!! | GCCCATCATTGACTTTTCAT+TGG | - | chr6_2:47819112-47819131 | Msa0918800:intron | 40.0% |
| !!! | ATTTTGGTTCGAGCAGGTTT+TGG | - | chr6_2:47819292-47819311 | Msa0918800:intron | 40.0% |
| !!! | TTTTGGTTCGAGCAGGTTTT+GGG | - | chr6_2:47819293-47819312 | Msa0918800:intron | 40.0% |
| TCAATGAGGGATATGGTTTC+AGG | - | chr6_2:47819497-47819516 | Msa0918800:intron | 40.0% | |
| AGCTGGCACTAACTACTATA+TGG | + | chr6_2:47819672-47819691 | None:intergenic | 40.0% | |
| AGTTAGTGCCAGCTGTTAAT+TGG | - | chr6_2:47819678-47819697 | Msa0918800:intron | 40.0% | |
| TCTTCCTACCAATTAACAGC+TGG | + | chr6_2:47819689-47819708 | None:intergenic | 40.0% | |
| GTTGTTTGAGCACAAGGTTG+AGG | - | chr6_2:47815316-47815335 | Msa0918800:CDS | 45.0% | |
| TTTGAGCACAAGGTTGAGGA+AGG | - | chr6_2:47815320-47815339 | Msa0918800:CDS | 45.0% | |
| CCATAGAATCGCAAGACAGT+TGG | + | chr6_2:47815476-47815495 | None:intergenic | 45.0% | |
| CCAACTGTCTTGCGATTCTA+TGG | - | chr6_2:47815473-47815492 | Msa0918800:intron | 45.0% | |
| GTCTTGCGATTCTATGGCAA+AGG | - | chr6_2:47815479-47815498 | Msa0918800:intron | 45.0% | |
| TACATCGTTGGCACTCTTCA+TGG | - | chr6_2:47815519-47815538 | Msa0918800:intron | 45.0% | |
| TGGCACTCTTCATGGCAATA+AGG | - | chr6_2:47815527-47815546 | Msa0918800:intron | 45.0% | |
| TGGCAACCTTCATCTCATCA+AGG | + | chr6_2:47816066-47816085 | None:intergenic | 45.0% | |
| ! | AATCAAGTATGGTGGCGTAG+TGG | - | chr6_2:47816497-47816516 | Msa0918800:intron | 45.0% |
| ! | TATTTTCCGGTTGCCTCTTC+AGG | - | chr6_2:47816900-47816919 | Msa0918800:intron | 45.0% |
| ! | ATTTTCCGGTTGCCTCTTCA+GGG | - | chr6_2:47816901-47816920 | Msa0918800:intron | 45.0% |
| AATAACCCTGAAGAGGCAAC+CGG | + | chr6_2:47816909-47816928 | None:intergenic | 45.0% | |
| ATGCACCAAGGTCTCCATTA+CGG | + | chr6_2:47816956-47816975 | None:intergenic | 45.0% | |
| ! | CCTTGGTGCATGAAAGAGAT+CGG | - | chr6_2:47816965-47816984 | Msa0918800:intron | 45.0% |
| AAGTGAGATTGGATGGAGAG+AGG | + | chr6_2:47817016-47817035 | None:intergenic | 45.0% | |
| GAAAAACATTGTGCGAGGGA+AGG | + | chr6_2:47817643-47817662 | None:intergenic | 45.0% | |
| GAGGGAAAAACATTGTGCGA+GGG | + | chr6_2:47817647-47817666 | None:intergenic | 45.0% | |
| GCTTCGTTTCAGATTTGGGA+GGG | + | chr6_2:47817665-47817684 | None:intergenic | 45.0% | |
| CTTATCCTAGGCAAACCTGA+AGG | - | chr6_2:47817761-47817780 | Msa0918800:intron | 45.0% | |
| ! | TTAGACCTTCAGGTTTGCCT+AGG | + | chr6_2:47817769-47817788 | None:intergenic | 45.0% |
| TGAAACAAAATAGGCCCCCA+AGG | + | chr6_2:47817801-47817820 | None:intergenic | 45.0% | |
| !! | GGCATTCTGAAGTTTAGACG+AGG | - | chr6_2:47817961-47817980 | Msa0918800:intron | 45.0% |
| TCGTCATCATTGAGGGACTA+TGG | + | chr6_2:47818019-47818038 | None:intergenic | 45.0% | |
| ! | AGTTGTTGCTGTTGTTGGCA+AGG | - | chr6_2:47818381-47818400 | Msa0918800:intron | 45.0% |
| ! | GTTGTTGCTGTTGTTGGCAA+GGG | - | chr6_2:47818382-47818401 | Msa0918800:intron | 45.0% |
| ! | TTGTTGCTGTTGTTGGCAAG+GGG | - | chr6_2:47818383-47818402 | Msa0918800:intron | 45.0% |
| TGGAAGCAACCTATCAAGGT+TGG | - | chr6_2:47818430-47818449 | Msa0918800:intron | 45.0% | |
| ATTCTCATCACAGGGATAGC+CGG | + | chr6_2:47818816-47818835 | None:intergenic | 45.0% | |
| ! | ATTGTGGGTATTGTTGTGGC+TGG | - | chr6_2:47818843-47818862 | Msa0918800:exon | 45.0% |
| ! | TTGTGGGTATTGTTGTGGCT+GGG | - | chr6_2:47818844-47818863 | Msa0918800:exon | 45.0% |
| ! | TTTCCGGTTCGTGATTCGTT+TGG | - | chr6_2:47819139-47819158 | Msa0918800:intron | 45.0% |
| ! | TTCCGGTTCGTGATTCGTTT+GGG | - | chr6_2:47819140-47819159 | Msa0918800:intron | 45.0% |
| ATCCCAAACGAATCACGAAC+CGG | + | chr6_2:47819145-47819164 | None:intergenic | 45.0% | |
| !!! | TTGGGAGTATCTGCAGCTTT+TGG | - | chr6_2:47819311-47819330 | Msa0918800:intron | 45.0% |
| TCTCGCCATGTTTGTCAATG+AGG | - | chr6_2:47819483-47819502 | Msa0918800:intron | 45.0% | |
| CTCGCCATGTTTGTCAATGA+GGG | - | chr6_2:47819484-47819503 | Msa0918800:intron | 45.0% | |
| !! | TGGTTTCAGGTTCTGTTCTG+TGG | - | chr6_2:47819510-47819529 | Msa0918800:intron | 45.0% |
| !! | GGTTTCAGGTTCTGTTCTGT+GGG | - | chr6_2:47819511-47819530 | Msa0918800:intron | 45.0% |
| AGTGCCAGCTGTTAATTGGT+AGG | - | chr6_2:47819682-47819701 | Msa0918800:intron | 45.0% | |
| !! | GCCGTTGTTGTTTGAGCACA+AGG | - | chr6_2:47815310-47815329 | Msa0918800:CDS | 50.0% |
| GCATGGAGGTGGATGTTGTT+GGG | + | chr6_2:47815350-47815369 | None:intergenic | 50.0% | |
| TTCGTTCTGTTTCCGGTGAC+TGG | + | chr6_2:47815410-47815429 | None:intergenic | 50.0% | |
| AGTCACCGGAAACAGAACGA+AGG | - | chr6_2:47815409-47815428 | Msa0918800:intron | 50.0% | |
| TGACGCCTTCGTTCTGTTTC+CGG | + | chr6_2:47815417-47815436 | None:intergenic | 50.0% | |
| !! | AACAGAACGAAGGCGTCAGT+TGG | - | chr6_2:47815419-47815438 | Msa0918800:intron | 50.0% |
| TGCGATTCTATGGCAAAGGG+AGG | - | chr6_2:47815483-47815502 | Msa0918800:intron | 50.0% | |
| GTTTGCGACGTCTACATCGT+TGG | - | chr6_2:47815507-47815526 | Msa0918800:intron | 50.0% | |
| ! | TCCTGGTGCTGAGTTTCGTT+CGG | - | chr6_2:47816461-47816480 | Msa0918800:intron | 50.0% |
| ! | TATGGTGGCGTAGTGGTACT+CGG | - | chr6_2:47816504-47816523 | Msa0918800:intron | 50.0% |
| GTGATCGCCCTATAGAGGTT+AGG | - | chr6_2:47816526-47816545 | Msa0918800:intron | 50.0% | |
| ! | CATGGAGTAAGCTGCCACTT+TGG | - | chr6_2:47816710-47816729 | Msa0918800:intron | 50.0% |
| ACCAAGGTCTCCATTACGGT+TGG | + | chr6_2:47816952-47816971 | None:intergenic | 50.0% | |
| CCGATCTCTTTCATGCACCA+AGG | + | chr6_2:47816968-47816987 | None:intergenic | 50.0% | |
| !! | ACTCTTGCTTTTGGCATCGC+TGG | + | chr6_2:47817432-47817451 | None:intergenic | 50.0% |
| GGAGGGAAAAACATTGTGCG+AGG | + | chr6_2:47817648-47817667 | None:intergenic | 50.0% | |
| GGCTTCGTTTCAGATTTGGG+AGG | + | chr6_2:47817666-47817685 | None:intergenic | 50.0% | |
| TCTCGAGATCCTGAATCTCC+TGG | + | chr6_2:47818776-47818795 | None:intergenic | 50.0% | |
| GACAATTCCACCTCCCAAAC+CGG | - | chr6_2:47818794-47818813 | Msa0918800:CDS | 50.0% | |
| ! | ATCACAGGGATAGCCGGTTT+GGG | + | chr6_2:47818810-47818829 | None:intergenic | 50.0% |
| ! | TGTGGGTATTGTTGTGGCTG+GGG | - | chr6_2:47818845-47818864 | Msa0918800:exon | 50.0% |
| ! | TTCAGGTTCTGTTCTGTGGG+AGG | - | chr6_2:47819514-47819533 | Msa0918800:intron | 50.0% |
| GGCATGGAGGTGGATGTTGT+TGG | + | chr6_2:47815351-47815370 | None:intergenic | 55.0% | |
| !! | CTGTTTCCGGTGACTGGTCT+CGG | + | chr6_2:47815404-47815423 | None:intergenic | 55.0% |
| GCGTCAGTTGGAGTTACCGA+AGG | - | chr6_2:47815431-47815450 | Msa0918800:intron | 55.0% | |
| GGAGTTGTGCTCAGATCGTG+TGG | - | chr6_2:47816030-47816049 | Msa0918800:intron | 55.0% | |
| TATCAGCTGGTTGGATGCCG+AGG | - | chr6_2:47816261-47816280 | Msa0918800:intron | 55.0% | |
| TGACAGATTGACCGTAGGCG+TGG | - | chr6_2:47816432-47816451 | Msa0918800:intron | 55.0% | |
| ! | ACTCGGTGATCGCCCTATAG+AGG | - | chr6_2:47816521-47816540 | Msa0918800:intron | 55.0% |
| ! | GCCAACCGTAATGGAGACCT+TGG | - | chr6_2:47816948-47816967 | Msa0918800:intron | 55.0% |
| TGTTTATCCGGAGGGGCTCT+TGG | - | chr6_2:47817699-47817718 | Msa0918800:intron | 55.0% | |
| ATGCTATCCAAGAGCCCCTC+CGG | + | chr6_2:47817709-47817728 | None:intergenic | 55.0% | |
| !! | GTTGGCAAGGGGCATCTAGA+AGG | - | chr6_2:47818394-47818413 | Msa0918800:intron | 55.0% |
| CATCACAGGGATAGCCGGTT+TGG | + | chr6_2:47818811-47818830 | None:intergenic | 55.0% | |
| CGAGAATCGAGGCATGGAGG+TGG | + | chr6_2:47815361-47815380 | None:intergenic | 60.0% | |
| GGTCGAGAATCGAGGCATGG+AGG | + | chr6_2:47815364-47815383 | None:intergenic | 60.0% | |
| GGTGGTCGAGAATCGAGGCA+TGG | + | chr6_2:47815367-47815386 | None:intergenic | 60.0% | |
| TCGGAGGTGGTCGAGAATCG+AGG | + | chr6_2:47815372-47815391 | None:intergenic | 60.0% | |
| ! | CTGGTCTCGGCAGAAGGCAT+CGG | + | chr6_2:47815391-47815410 | None:intergenic | 60.0% |
| CTTCTGCCGAGACCAGTCAC+CGG | - | chr6_2:47815395-47815414 | Msa0918800:intron | 60.0% | |
| CAGGATAGACGCCACGCCTA+CGG | + | chr6_2:47816446-47816465 | None:intergenic | 60.0% | |
| GCCGAACGAAACTCAGCACC+AGG | + | chr6_2:47816465-47816484 | None:intergenic | 60.0% | |
| !! | ACAGGGATAGCCGGTTTGGG+AGG | + | chr6_2:47818807-47818826 | None:intergenic | 60.0% |
| !! | TCGGCAGAAGGCATCGGAGG+TGG | + | chr6_2:47815385-47815404 | None:intergenic | 65.0% |
| !! | GTCTCGGCAGAAGGCATCGG+AGG | + | chr6_2:47815388-47815407 | None:intergenic | 65.0% |
| !! | CGGTGACTGGTCTCGGCAGA+AGG | + | chr6_2:47815397-47815416 | None:intergenic | 65.0% |
| CGTAGGCGTGGCGTCTATCC+TGG | - | chr6_2:47816444-47816463 | Msa0918800:intron | 65.0% | |
| !! | GGGATAGCCGGTTTGGGAGG+TGG | + | chr6_2:47818804-47818823 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 47814360 | 47819795 | 47814360 | ID=Msa0918800;Name=Msa0918800 |
| chr6_2 | mRNA | 47814360 | 47819795 | 47814360 | ID=Msa0918800-mRNA-1;Parent=Msa0918800;Name=Msa0918800-mRNA-1;_AED=0.15;_eAED=0.15;_QI=134|0.8|0.81|1|0.9|0.81|11|431|337 |
| chr6_2 | exon | 47814360 | 47814847 | 47814360 | ID=Msa0918800-mRNA-1:exon:7385;Parent=Msa0918800-mRNA-1 |
| chr6_2 | exon | 47815289 | 47815384 | 47815289 | ID=Msa0918800-mRNA-1:exon:7384;Parent=Msa0918800-mRNA-1 |
| chr6_2 | exon | 47815708 | 47815819 | 47815708 | ID=Msa0918800-mRNA-1:exon:7383;Parent=Msa0918800-mRNA-1 |
| chr6_2 | exon | 47817169 | 47817233 | 47817169 | ID=Msa0918800-mRNA-1:exon:7382;Parent=Msa0918800-mRNA-1 |
| chr6_2 | exon | 47817342 | 47817461 | 47817342 | ID=Msa0918800-mRNA-1:exon:7381;Parent=Msa0918800-mRNA-1 |
| chr6_2 | exon | 47817613 | 47817717 | 47817613 | ID=Msa0918800-mRNA-1:exon:7380;Parent=Msa0918800-mRNA-1 |
| chr6_2 | exon | 47817861 | 47817956 | 47817861 | ID=Msa0918800-mRNA-1:exon:7379;Parent=Msa0918800-mRNA-1 |
| chr6_2 | exon | 47818077 | 47818136 | 47818077 | ID=Msa0918800-mRNA-1:exon:7378;Parent=Msa0918800-mRNA-1 |
| chr6_2 | exon | 47818221 | 47818268 | 47818221 | ID=Msa0918800-mRNA-1:exon:7377;Parent=Msa0918800-mRNA-1 |
| chr6_2 | exon | 47818607 | 47818885 | 47818607 | ID=Msa0918800-mRNA-1:exon:7376;Parent=Msa0918800-mRNA-1 |
| chr6_2 | exon | 47819686 | 47819795 | 47819686 | ID=Msa0918800-mRNA-1:exon:7375;Parent=Msa0918800-mRNA-1 |
| chr6_2 | five_prime_UTR | 47819686 | 47819795 | 47819686 | ID=Msa0918800-mRNA-1:five_prime_utr;Parent=Msa0918800-mRNA-1 |
| chr6_2 | five_prime_UTR | 47818862 | 47818885 | 47818862 | ID=Msa0918800-mRNA-1:five_prime_utr;Parent=Msa0918800-mRNA-1 |
| chr6_2 | CDS | 47818607 | 47818861 | 47818607 | ID=Msa0918800-mRNA-1:cds;Parent=Msa0918800-mRNA-1 |
| chr6_2 | CDS | 47818221 | 47818268 | 47818221 | ID=Msa0918800-mRNA-1:cds;Parent=Msa0918800-mRNA-1 |
| chr6_2 | CDS | 47818077 | 47818136 | 47818077 | ID=Msa0918800-mRNA-1:cds;Parent=Msa0918800-mRNA-1 |
| chr6_2 | CDS | 47817861 | 47817956 | 47817861 | ID=Msa0918800-mRNA-1:cds;Parent=Msa0918800-mRNA-1 |
| chr6_2 | CDS | 47817613 | 47817717 | 47817613 | ID=Msa0918800-mRNA-1:cds;Parent=Msa0918800-mRNA-1 |
| chr6_2 | CDS | 47817342 | 47817461 | 47817342 | ID=Msa0918800-mRNA-1:cds;Parent=Msa0918800-mRNA-1 |
| chr6_2 | CDS | 47817169 | 47817233 | 47817169 | ID=Msa0918800-mRNA-1:cds;Parent=Msa0918800-mRNA-1 |
| chr6_2 | CDS | 47815708 | 47815819 | 47815708 | ID=Msa0918800-mRNA-1:cds;Parent=Msa0918800-mRNA-1 |
| chr6_2 | CDS | 47815289 | 47815384 | 47815289 | ID=Msa0918800-mRNA-1:cds;Parent=Msa0918800-mRNA-1 |
| chr6_2 | CDS | 47814791 | 47814847 | 47814791 | ID=Msa0918800-mRNA-1:cds;Parent=Msa0918800-mRNA-1 |
| chr6_2 | three_prime_UTR | 47814360 | 47814790 | 47814360 | ID=Msa0918800-mRNA-1:three_prime_utr;Parent=Msa0918800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
