Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386540 | XP_003603902.1 | 97.544 | 285 | 7 | 0 | 1 | 285 | 1 | 285 | 0.0 | 579 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386540 | sp|Q9XI99|USPL1_ARATH | 39.146 | 281 | 159 | 5 | 1 | 276 | 7 | 280 | 2.28e-66 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386540 | G7J6J4 | 97.544 | 285 | 7 | 0 | 1 | 285 | 1 | 285 | 0.0 | 579 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000370 | Msa0386540 | 0.805876 | 1.080179e-49 | -8.615850e-47 |
| Msa0013270 | Msa0386540 | 0.808529 | 2.961895e-50 | -8.615850e-47 |
| Msa0025160 | Msa0386540 | 0.821199 | 4.583527e-53 | -8.615850e-47 |
| Msa0038530 | Msa0386540 | 0.842301 | 2.811093e-58 | -8.615850e-47 |
| Msa0044780 | Msa0386540 | -0.819386 | 1.193486e-52 | -8.615850e-47 |
| Msa0045810 | Msa0386540 | 0.816739 | 4.734093e-52 | -8.615850e-47 |
| Msa0046200 | Msa0386540 | 0.809435 | 1.895322e-50 | -8.615850e-47 |
| Msa0053000 | Msa0386540 | 0.808286 | 3.337192e-50 | -8.615850e-47 |
| Msa0072520 | Msa0386540 | 0.831581 | 1.538859e-55 | -8.615850e-47 |
| Msa0077950 | Msa0386540 | 0.804775 | 1.837708e-49 | -8.615850e-47 |
| Msa0081030 | Msa0386540 | 0.810483 | 1.127141e-50 | -8.615850e-47 |
| Msa0086250 | Msa0386540 | 0.825082 | 5.690490e-54 | -8.615850e-47 |
| Msa0091350 | Msa0386540 | 0.814001 | 1.924270e-51 | -8.615850e-47 |
| Msa0106540 | Msa0386540 | 0.805774 | 1.134575e-49 | -8.615850e-47 |
| Msa0127340 | Msa0386540 | 0.801737 | 7.819739e-49 | -8.615850e-47 |
| Msa0132700 | Msa0386540 | 0.866727 | 2.307241e-65 | -8.615850e-47 |
| Msa0137010 | Msa0386540 | -0.802922 | 4.457439e-49 | -8.615850e-47 |
| Msa0161930 | Msa0386540 | 0.830315 | 3.146927e-55 | -8.615850e-47 |
| Msa0181880 | Msa0386540 | 0.845659 | 3.538050e-59 | -8.615850e-47 |
| Msa0189720 | Msa0386540 | 0.834887 | 2.310953e-56 | -8.615850e-47 |
| Msa0205210 | Msa0386540 | 0.806829 | 6.801541e-50 | -8.615850e-47 |
| Msa0206370 | Msa0386540 | 0.869559 | 2.826894e-66 | -8.615850e-47 |
| Msa0221180 | Msa0386540 | 0.801987 | 6.947590e-49 | -8.615850e-47 |
| Msa0232100 | Msa0386540 | 0.844613 | 6.783665e-59 | -8.615850e-47 |
| Msa0383000 | Msa0386540 | 0.814369 | 1.595348e-51 | -8.615850e-47 |
| Msa0386540 | Msa0386560 | 0.832115 | 1.136160e-55 | -8.615850e-47 |
| Msa0386540 | Msa0387930 | 0.802200 | 6.279046e-49 | -8.615850e-47 |
| Msa0386540 | Msa0401060 | 0.808708 | 2.711505e-50 | -8.615850e-47 |
| Msa0386540 | Msa0401970 | 0.831124 | 1.994101e-55 | -8.615850e-47 |
| Msa0386540 | Msa0433150 | 0.801017 | 1.098050e-48 | -8.615850e-47 |
| Msa0386540 | Msa0434090 | 0.800175 | 1.630093e-48 | -8.615850e-47 |
| Msa0386540 | Msa0437480 | 0.869923 | 2.150927e-66 | -8.615850e-47 |
| Msa0386540 | Msa0440350 | 0.846676 | 1.870608e-59 | -8.615850e-47 |
| Msa0386540 | Msa0466520 | 0.830698 | 2.536908e-55 | -8.615850e-47 |
| Msa0386540 | Msa0467170 | 0.806027 | 1.003838e-49 | -8.615850e-47 |
| Msa0386540 | Msa0481670 | 0.847479 | 1.126505e-59 | -8.615850e-47 |
| Msa0386540 | Msa0486460 | 0.817471 | 3.242152e-52 | -8.615850e-47 |
| Msa0386540 | Msa0498610 | 0.802996 | 4.303830e-49 | -8.615850e-47 |
| Msa0386540 | Msa0504720 | 0.808402 | 3.152996e-50 | -8.615850e-47 |
| Msa0386540 | Msa0513080 | 0.809651 | 1.702988e-50 | -8.615850e-47 |
| Msa0386540 | Msa0523550 | 0.825687 | 4.091946e-54 | -8.615850e-47 |
| Msa0386540 | Msa0523570 | 0.890568 | 8.755786e-74 | -8.615850e-47 |
| Msa0386540 | Msa0549960 | 0.829203 | 5.870435e-55 | -8.615850e-47 |
| Msa0386540 | Msa0557850 | 0.804445 | 2.152824e-49 | -8.615850e-47 |
| Msa0386540 | Msa0567330 | 0.808358 | 3.220506e-50 | -8.615850e-47 |
| Msa0386540 | Msa0567570 | 0.821001 | 5.091625e-53 | -8.615850e-47 |
| Msa0386540 | Msa0568460 | -0.803309 | 3.706436e-49 | -8.615850e-47 |
| Msa0386540 | Msa0570010 | 0.812219 | 4.732608e-51 | -8.615850e-47 |
| Msa0386540 | Msa0576320 | 0.801297 | 9.622817e-49 | -8.615850e-47 |
| Msa0386540 | Msa0579070 | -0.803197 | 3.911083e-49 | -8.615850e-47 |
| Msa0386540 | Msa0610700 | -0.802618 | 5.149452e-49 | -8.615850e-47 |
| Msa0386540 | Msa0612520 | 0.823671 | 1.221686e-53 | -8.615850e-47 |
| Msa0386540 | Msa0619710 | 0.808633 | 2.813549e-50 | -8.615850e-47 |
| Msa0386540 | Msa0646010 | 0.838637 | 2.554339e-57 | -8.615850e-47 |
| Msa0386540 | Msa0646430 | 0.833326 | 5.685530e-56 | -8.615850e-47 |
| Msa0386540 | Msa0660090 | 0.825179 | 5.396820e-54 | -8.615850e-47 |
| Msa0386540 | Msa0686040 | 0.829773 | 4.267381e-55 | -8.615850e-47 |
| Msa0386540 | Msa0687090 | 0.804873 | 1.752711e-49 | -8.615850e-47 |
| Msa0386540 | Msa0695560 | 0.831920 | 1.269869e-55 | -8.615850e-47 |
| Msa0386540 | Msa0706150 | 0.827555 | 1.466204e-54 | -8.615850e-47 |
| Msa0386540 | Msa0708020 | 0.806508 | 7.952030e-50 | -8.615850e-47 |
| Msa0386540 | Msa0719270 | 0.807282 | 5.453279e-50 | -8.615850e-47 |
| Msa0386540 | Msa0735010 | 0.806047 | 9.943196e-50 | -8.615850e-47 |
| Msa0386540 | Msa0745140 | 0.804567 | 2.030438e-49 | -8.615850e-47 |
| Msa0386540 | Msa0776640 | 0.802925 | 4.450405e-49 | -8.615850e-47 |
| Msa0386540 | Msa0825920 | 0.809227 | 2.099894e-50 | -8.615850e-47 |
| Msa0386540 | Msa0838620 | -0.803450 | 3.466231e-49 | -8.615850e-47 |
| Msa0386540 | Msa0880910 | 0.803351 | 3.634527e-49 | -8.615850e-47 |
| Msa0386540 | Msa0881310 | 0.816656 | 4.940993e-52 | -8.615850e-47 |
| Msa0386540 | Msa0930180 | 0.804352 | 2.250992e-49 | -8.615850e-47 |
| Msa0386540 | Msa0967780 | 0.807674 | 4.505043e-50 | -8.615850e-47 |
| Msa0386540 | Msa0968180 | 0.827616 | 1.417913e-54 | -8.615850e-47 |
| Msa0386540 | Msa1029820 | 0.841976 | 3.427597e-58 | -8.615850e-47 |
| Msa0386540 | Msa1031410 | 0.813043 | 3.126042e-51 | -8.615850e-47 |
| Msa0386540 | Msa1042300 | 0.833042 | 6.694750e-56 | -8.615850e-47 |
| Msa0386540 | Msa1052730 | 0.803845 | 2.870025e-49 | -8.615850e-47 |
| Msa0386540 | Msa1068730 | 0.811525 | 6.702667e-51 | -8.615850e-47 |
| Msa0386540 | Msa1068940 | 0.844496 | 7.291291e-59 | -8.615850e-47 |
| Msa0386540 | Msa1068960 | 0.815359 | 9.625680e-52 | -8.615850e-47 |
| Msa0386540 | Msa1088320 | 0.804384 | 2.216576e-49 | -8.615850e-47 |
| Msa0386540 | Msa1133440 | -0.801832 | 7.475920e-49 | -8.615850e-47 |
| Msa0386540 | Msa1149910 | 0.822307 | 2.540730e-53 | -8.615850e-47 |
| Msa0386540 | Msa1156710 | 0.833830 | 4.256928e-56 | -8.615850e-47 |
| Msa0386540 | Msa1156730 | 0.809128 | 2.205204e-50 | -8.615850e-47 |
| Msa0386540 | Msa1166190 | 0.807642 | 4.574620e-50 | -8.615850e-47 |
| Msa0386540 | Msa1166290 | 0.809899 | 1.506473e-50 | -8.615850e-47 |
| Msa0386540 | Msa1194290 | 0.814616 | 1.407236e-51 | -8.615850e-47 |
| Msa0386540 | Msa1200500 | 0.841279 | 5.230816e-58 | -8.615850e-47 |
| Msa0386540 | Msa1206920 | 0.819971 | 8.775372e-53 | -8.615850e-47 |
| Msa0386540 | Msa1217890 | 0.811967 | 5.372359e-51 | -8.615850e-47 |
| Msa0386540 | Msa1228580 | 0.808829 | 2.555401e-50 | -8.615850e-47 |
| Msa0386540 | Msa1246830 | 0.802786 | 4.755388e-49 | -8.615850e-47 |
| Msa0386540 | Msa1253520 | 0.805826 | 1.106434e-49 | -8.615850e-47 |
| Msa0386540 | Msa1254540 | 0.802969 | 4.359189e-49 | -8.615850e-47 |
| Msa0386540 | Msa1255710 | 0.829424 | 5.187412e-55 | -8.615850e-47 |
| Msa0386540 | Msa1257200 | 0.823343 | 1.457778e-53 | -8.615850e-47 |
| Msa0386540 | Msa1261160 | 0.804234 | 2.381839e-49 | -8.615850e-47 |
| Msa0386540 | Msa1263740 | 0.801439 | 8.998889e-49 | -8.615850e-47 |
| Msa0386540 | Msa1263780 | 0.806541 | 7.826291e-50 | -8.615850e-47 |
| Msa0386540 | Msa1281780 | 0.800843 | 1.191505e-48 | -8.615850e-47 |
| Msa0386540 | Msa1288070 | 0.812667 | 3.777249e-51 | -8.615850e-47 |
| Msa0386540 | Msa1290380 | 0.813856 | 2.070536e-51 | -8.615850e-47 |
| Msa0386540 | Msa1290440 | 0.808111 | 3.636764e-50 | -8.615850e-47 |
| Msa0386540 | Msa1293840 | 0.830498 | 2.838938e-55 | -8.615850e-47 |
| Msa0386540 | Msa1294790 | 0.812263 | 4.629165e-51 | -8.615850e-47 |
| Msa0386540 | Msa1296860 | 0.860894 | 1.501788e-63 | -8.615850e-47 |
| Msa0386540 | Msa1297070 | 0.810182 | 1.309143e-50 | -8.615850e-47 |
| Msa0386540 | Msa1300420 | 0.813461 | 2.530006e-51 | -8.615850e-47 |
| Msa0386540 | Msa1306820 | 0.806208 | 9.195928e-50 | -8.615850e-47 |
| Msa0386540 | Msa1308850 | 0.815833 | 7.549817e-52 | -8.615850e-47 |
| Msa0386540 | Msa1362590 | 0.806583 | 7.667473e-50 | -8.615850e-47 |
| Msa0386540 | Msa1372520 | 0.815915 | 7.238676e-52 | -8.615850e-47 |
| Msa0386540 | Msa1381010 | 0.826103 | 3.259656e-54 | -8.615850e-47 |
| Msa0386540 | Msa1381030 | 0.941980 | 1.611731e-101 | -8.615850e-47 |
| Msa0386540 | Msa1389820 | 0.807527 | 4.839417e-50 | -8.615850e-47 |
| Msa0386540 | Msa1405830 | 0.807486 | 4.937053e-50 | -8.615850e-47 |
| Msa0386540 | Msa1406720 | 0.827962 | 1.171094e-54 | -8.615850e-47 |
| Msa0386540 | Msa1407810 | 0.818230 | 2.185091e-52 | -8.615850e-47 |
| Msa0386540 | Msa1410160 | 0.807866 | 4.099219e-50 | -8.615850e-47 |
| Msa0386540 | Msa1433360 | 0.812599 | 3.909225e-51 | -8.615850e-47 |
| Msa0386540 | Msa1433570 | 0.807649 | 4.558638e-50 | -8.615850e-47 |
| Msa0386540 | Msa1436620 | 0.800484 | 1.410331e-48 | -8.615850e-47 |
| Msa0386540 | Msa1437780 | 0.819654 | 1.036588e-52 | -8.615850e-47 |
| Msa0386540 | Msa1438510 | 0.827802 | 1.279623e-54 | -8.615850e-47 |
| Msa0386540 | Msa1440430 | 0.942766 | 4.009897e-102 | -8.615850e-47 |
| Msa0386540 | Msa1450190 | 0.805707 | 1.172069e-49 | -8.615850e-47 |
| Msa0256980 | Msa0386540 | 0.800390 | 1.473998e-48 | -8.615850e-47 |
| Msa0262750 | Msa0386540 | 0.821299 | 4.347100e-53 | -8.615850e-47 |
| Msa0264230 | Msa0386540 | 0.804790 | 1.824270e-49 | -8.615850e-47 |
| Msa0278920 | Msa0386540 | 0.800723 | 1.260966e-48 | -8.615850e-47 |
| Msa0336430 | Msa0386540 | 0.826371 | 2.814473e-54 | -8.615850e-47 |
| Msa0336460 | Msa0386540 | 0.843654 | 1.226917e-58 | -8.615850e-47 |
| Msa0336520 | Msa0386540 | 0.817586 | 3.053667e-52 | -8.615850e-47 |
| Msa0339530 | Msa0386540 | 0.803933 | 2.751434e-49 | -8.615850e-47 |
| Msa0354840 | Msa0386540 | 0.868134 | 8.181128e-66 | -8.615850e-47 |
| Msa0359010 | Msa0386540 | 0.802761 | 4.811812e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386540 | MtrunA17_Chr3g0144451 | 97.544 | 285 | 7 | 0 | 1 | 285 | 1 | 285 | 0.0 | 579 |
| Msa0386540 | MtrunA17_Chr3g0138231 | 84.266 | 286 | 34 | 2 | 1 | 285 | 1 | 276 | 4.23e-172 | 476 |
| Msa0386540 | MtrunA17_Chr4g0034821 | 67.905 | 296 | 84 | 2 | 1 | 285 | 6 | 301 | 1.50e-143 | 405 |
| Msa0386540 | MtrunA17_Chr3g0144421 | 46.465 | 297 | 130 | 4 | 7 | 275 | 7 | 302 | 4.79e-93 | 277 |
| Msa0386540 | MtrunA17_Chr3g0144391 | 47.032 | 219 | 113 | 1 | 57 | 275 | 290 | 505 | 1.72e-70 | 226 |
| Msa0386540 | MtrunA17_Chr3g0144411 | 46.575 | 219 | 114 | 1 | 57 | 275 | 323 | 538 | 8.99e-69 | 222 |
| Msa0386540 | MtrunA17_Chr4g0034731 | 46.119 | 219 | 113 | 4 | 59 | 275 | 217 | 432 | 2.99e-65 | 210 |
| Msa0386540 | MtrunA17_Chr4g0034451 | 41.463 | 246 | 138 | 4 | 39 | 281 | 290 | 532 | 4.35e-64 | 209 |
| Msa0386540 | MtrunA17_Chr4g0034721 | 46.903 | 226 | 115 | 4 | 59 | 282 | 361 | 583 | 2.43e-62 | 206 |
| Msa0386540 | MtrunA17_Chr4g0034691 | 40.074 | 272 | 148 | 5 | 16 | 282 | 454 | 715 | 2.05e-59 | 201 |
| Msa0386540 | MtrunA17_Chr1g0147271 | 43.750 | 224 | 121 | 4 | 54 | 276 | 166 | 385 | 4.37e-59 | 193 |
| Msa0386540 | MtrunA17_Chr6g0485051 | 45.455 | 209 | 108 | 4 | 71 | 276 | 1 | 206 | 3.05e-58 | 185 |
| Msa0386540 | MtrunA17_Chr3g0139431 | 42.291 | 227 | 123 | 5 | 53 | 276 | 101 | 322 | 1.38e-55 | 182 |
| Msa0386540 | MtrunA17_Chr1g0147301 | 41.964 | 224 | 124 | 5 | 55 | 276 | 66 | 285 | 4.47e-54 | 177 |
| Msa0386540 | MtrunA17_Chr1g0147331 | 40.625 | 224 | 126 | 5 | 54 | 276 | 108 | 325 | 2.10e-53 | 176 |
| Msa0386540 | MtrunA17_Chr1g0147291 | 41.704 | 223 | 122 | 5 | 55 | 276 | 52 | 267 | 4.28e-53 | 174 |
| Msa0386540 | MtrunA17_Chr1g0146631 | 40.179 | 224 | 127 | 5 | 54 | 276 | 108 | 325 | 1.77e-52 | 174 |
| Msa0386540 | MtrunA17_Chr1g0147321 | 41.364 | 220 | 121 | 5 | 55 | 273 | 23 | 235 | 4.52e-52 | 171 |
| Msa0386540 | MtrunA17_Chr1g0147311 | 41.071 | 224 | 126 | 5 | 55 | 276 | 137 | 356 | 2.98e-51 | 172 |
| Msa0386540 | MtrunA17_Chr1g0147261 | 40.090 | 222 | 127 | 4 | 55 | 276 | 85 | 300 | 5.73e-51 | 169 |
| Msa0386540 | MtrunA17_Chr1g0147251 | 39.640 | 222 | 125 | 4 | 55 | 276 | 31 | 243 | 1.44e-49 | 164 |
| Msa0386540 | MtrunA17_Chr1g0147241 | 38.839 | 224 | 131 | 3 | 53 | 276 | 96 | 313 | 1.05e-48 | 164 |
| Msa0386540 | MtrunA17_Chr8g0365361 | 32.127 | 221 | 137 | 6 | 59 | 274 | 181 | 393 | 2.50e-30 | 117 |
| Msa0386540 | MtrunA17_Chr5g0413591 | 32.883 | 222 | 134 | 7 | 59 | 274 | 415 | 627 | 2.16e-29 | 117 |
| Msa0386540 | MtrunA17_Chr8g0365401 | 32.432 | 222 | 135 | 7 | 59 | 274 | 412 | 624 | 7.44e-28 | 112 |
| Msa0386540 | MtrunA17_Chr3g0117791 | 32.420 | 219 | 139 | 6 | 59 | 274 | 413 | 625 | 4.61e-26 | 107 |
| Msa0386540 | MtrunA17_Chr8g0365381 | 30.909 | 220 | 139 | 5 | 59 | 273 | 429 | 640 | 2.34e-25 | 105 |
| Msa0386540 | MtrunA17_Chr4g0034051 | 54.430 | 79 | 34 | 2 | 199 | 275 | 1 | 79 | 3.23e-25 | 96.3 |
| Msa0386540 | MtrunA17_Chr4g0076231 | 32.903 | 155 | 99 | 4 | 121 | 273 | 5 | 156 | 1.19e-24 | 97.1 |
| Msa0386540 | MtrunA17_Chr8g0355871 | 38.514 | 148 | 81 | 5 | 128 | 275 | 85 | 222 | 2.59e-20 | 87.4 |
| Msa0386540 | MtrunA17_Chr5g0412981 | 27.189 | 217 | 153 | 3 | 58 | 273 | 196 | 408 | 2.62e-19 | 87.0 |
| Msa0386540 | MtrunA17_Chr5g0412981 | 27.160 | 162 | 113 | 3 | 97 | 257 | 27 | 184 | 6.08e-14 | 71.2 |
| Msa0386540 | MtrunA17_Chr5g0412991 | 27.189 | 217 | 153 | 3 | 58 | 273 | 196 | 408 | 2.99e-19 | 87.0 |
| Msa0386540 | MtrunA17_Chr5g0412991 | 27.160 | 162 | 113 | 3 | 97 | 257 | 27 | 184 | 1.88e-13 | 70.1 |
| Msa0386540 | MtrunA17_Chr8g0355311 | 35.135 | 148 | 86 | 5 | 128 | 275 | 53 | 190 | 3.35e-19 | 83.6 |
| Msa0386540 | MtrunA17_Chr8g0355321 | 37.500 | 144 | 74 | 5 | 135 | 275 | 172 | 302 | 9.12e-18 | 81.6 |
| Msa0386540 | MtrunA17_Chr8g0355861 | 34.459 | 148 | 87 | 4 | 128 | 275 | 123 | 260 | 1.14e-17 | 80.9 |
| Msa0386540 | MtrunA17_Chr5g0412951 | 26.190 | 210 | 150 | 3 | 65 | 273 | 2 | 207 | 2.62e-17 | 78.6 |
| Msa0386540 | MtrunA17_Chr2g0318871 | 34.228 | 149 | 88 | 5 | 129 | 277 | 123 | 261 | 2.00e-16 | 77.4 |
| Msa0386540 | MtrunA17_Chr2g0318901 | 34.722 | 144 | 84 | 5 | 134 | 277 | 128 | 261 | 2.83e-16 | 77.0 |
| Msa0386540 | MtrunA17_Chr8g0355841 | 34.043 | 141 | 83 | 4 | 135 | 275 | 379 | 509 | 1.50e-15 | 76.6 |
| Msa0386540 | MtrunA17_Chr8g0355331 | 34.722 | 144 | 78 | 5 | 135 | 275 | 291 | 421 | 2.86e-15 | 75.5 |
| Msa0386540 | MtrunA17_Chr8g0371951 | 44.737 | 76 | 37 | 4 | 192 | 264 | 14 | 87 | 1.80e-14 | 67.4 |
| Msa0386540 | MtrunA17_Chr8g0355831 | 32.432 | 148 | 90 | 4 | 128 | 275 | 214 | 351 | 3.46e-14 | 72.0 |
| Msa0386540 | MtrunA17_Chr1g0168781 | 32.215 | 149 | 92 | 5 | 128 | 276 | 121 | 260 | 3.67e-14 | 70.9 |
| Msa0386540 | MtrunA17_Chr2g0318931 | 33.103 | 145 | 85 | 6 | 135 | 277 | 138 | 272 | 2.94e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386540 | AT1G49320.1 | 39.146 | 281 | 159 | 5 | 1 | 276 | 7 | 280 | 2.31e-67 | 211 |
| Msa0386540 | AT5G25610.1 | 42.152 | 223 | 124 | 5 | 53 | 273 | 170 | 389 | 5.01e-52 | 175 |
| Msa0386540 | AT1G60390.1 | 31.532 | 222 | 135 | 6 | 59 | 273 | 409 | 620 | 1.25e-26 | 109 |
| Msa0386540 | AT1G70370.2 | 30.493 | 223 | 138 | 5 | 59 | 274 | 411 | 623 | 2.51e-24 | 102 |
| Msa0386540 | AT1G70370.1 | 30.493 | 223 | 138 | 5 | 59 | 274 | 411 | 623 | 2.51e-24 | 102 |
| Msa0386540 | AT1G23760.1 | 29.224 | 219 | 146 | 6 | 59 | 274 | 407 | 619 | 4.64e-23 | 99.4 |
Find 69 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACCTTGTGATTTCAATTT+AGG | 0.099086 | 3_1:+90308479 | None:intergenic |
| CATGTTTCATTTCAAGTTCT+TGG | 0.201295 | 3_1:-90308563 | Msa0386540:CDS |
| AACCTTGTGATTTCAATTTA+GGG | 0.289344 | 3_1:+90308480 | None:intergenic |
| TTGAAAAGTAACACTTGATT+TGG | 0.297099 | 3_1:+90308793 | None:intergenic |
| GAATTTACACAAAACATTCT+TGG | 0.298406 | 3_1:-90308857 | Msa0386540:CDS |
| AAGTGATTCAGCTTCTTCTT+TGG | 0.321679 | 3_1:+90309039 | None:intergenic |
| TCAAATGGGTGGTTAGATAT+AGG | 0.325253 | 3_1:+90308287 | None:intergenic |
| AGTGATTCAGCTTCTTCTTT+GGG | 0.342654 | 3_1:+90309040 | None:intergenic |
| CTTCTTTGGGCCATAACTTA+GGG | 0.345605 | 3_1:+90309053 | None:intergenic |
| GAACTTAACCTCTCCTTTGA+TGG | 0.356006 | 3_1:+90308907 | None:intergenic |
| GTGTGACAAGCCACCATCTT+TGG | 0.368463 | 3_1:+90308731 | None:intergenic |
| GCATTTCATTATGTTCTCTT+GGG | 0.369117 | 3_1:+90309491 | None:intergenic |
| TCCCAGCGGACAATTACATT+TGG | 0.373004 | 3_1:-90308505 | Msa0386540:CDS |
| TCTTCTTTGGGCCATAACTT+AGG | 0.375370 | 3_1:+90309052 | None:intergenic |
| AGCATTTCATTATGTTCTCT+TGG | 0.376189 | 3_1:+90309490 | None:intergenic |
| GAACATAATGAAATGCTAAC+TGG | 0.379487 | 3_1:-90309484 | Msa0386540:five_prime_UTR |
| GAAGTTGATGGGTCTCTCTT+AGG | 0.380142 | 3_1:+90309076 | None:intergenic |
| CAAATGGGTGGTTAGATATA+GGG | 0.382078 | 3_1:+90308288 | None:intergenic |
| TTTGTGTTCATGTGCTTCAA+TGG | 0.387687 | 3_1:-90308405 | Msa0386540:three_prime_UTR |
| CCCAGCGGACAATTACATTT+GGG | 0.389028 | 3_1:-90308504 | Msa0386540:CDS |
| GGCTATGGTGGTTTGTCACT+TGG | 0.403171 | 3_1:-90308609 | Msa0386540:CDS |
| TCATCTACTAGTAATCCTTC+TGG | 0.409210 | 3_1:-90309348 | Msa0386540:intron |
| TTTCAACCAATTCCCTAGCT+TGG | 0.420546 | 3_1:+90309230 | None:intergenic |
| CATAACTTAGGGGAAGTTGA+TGG | 0.430077 | 3_1:+90309064 | None:intergenic |
| ACTTTGAAAGATTTGAAAGT+AGG | 0.432070 | 3_1:-90309121 | Msa0386540:CDS |
| ATAGTCAAGAAAGTGAGAAT+AGG | 0.435139 | 3_1:-90308676 | Msa0386540:CDS |
| TAAGGTGCTTTCCATTGCTA+TGG | 0.435162 | 3_1:+90308949 | None:intergenic |
| TGGAGATAAGGTTGAGGCTA+TGG | 0.442985 | 3_1:-90308624 | Msa0386540:CDS |
| GAGAGTTGGTTTGATGAGAA+AGG | 0.452149 | 3_1:+90309016 | None:intergenic |
| GACTCATATGATTATGATGA+TGG | 0.452194 | 3_1:+90309176 | None:intergenic |
| TGGAGACCAAGCTAGGGAAT+TGG | 0.452353 | 3_1:-90309236 | Msa0386540:CDS |
| CTTTCCATTGCTATGGCTTG+TGG | 0.462619 | 3_1:+90308956 | None:intergenic |
| TGACACACAGAAGAGCTTCC+TGG | 0.469514 | 3_1:+90308533 | None:intergenic |
| CATCAACTTCCCCTAAGTTA+TGG | 0.470154 | 3_1:-90309063 | Msa0386540:CDS |
| TGTGCAAAGTTGCATAAGCT+TGG | 0.472166 | 3_1:+90308819 | None:intergenic |
| CAAGTTCTTGGTGTCACACC+AGG | 0.473983 | 3_1:-90308551 | Msa0386540:CDS |
| TAATATTGATCCTTCACTAA+TGG | 0.474162 | 3_1:-90309152 | Msa0386540:CDS |
| CCCAAATGTAATTGTCCGCT+GGG | 0.478272 | 3_1:+90308504 | None:intergenic |
| TAGTCAAGAAAGTGAGAATA+GGG | 0.482578 | 3_1:-90308675 | Msa0386540:CDS |
| TTTCTCATGGAGACCAAGCT+AGG | 0.482788 | 3_1:-90309243 | Msa0386540:CDS |
| TCACTTGGATACATCACAAT+GGG | 0.486976 | 3_1:-90308594 | Msa0386540:CDS |
| GGAAGAGAACAAGATTGAAA+AGG | 0.490541 | 3_1:+90309528 | None:intergenic |
| AACTCTTCACAGTTATCGCT+TGG | 0.503554 | 3_1:+90309425 | None:intergenic |
| ACCCAAATGTAATTGTCCGC+TGG | 0.506688 | 3_1:+90308503 | None:intergenic |
| CAACTTTGAAAGTAGAAACA+TGG | 0.510079 | 3_1:-90309402 | Msa0386540:exon |
| AACTTAACCTCTCCTTTGAT+GGG | 0.514268 | 3_1:+90308908 | None:intergenic |
| CACTATAGTAGAAATTATGA+TGG | 0.530352 | 3_1:-90308765 | Msa0386540:CDS |
| AGATAAGGTTGAGGCTATGG+TGG | 0.538336 | 3_1:-90308621 | Msa0386540:CDS |
| AAATTCTTCTCTTTCTCTCG+AGG | 0.539084 | 3_1:-90308983 | Msa0386540:CDS |
| TTCAAGCATAGATTCTAAAG+AGG | 0.545516 | 3_1:+90308877 | None:intergenic |
| ATAACTTAGGGGAAGTTGAT+GGG | 0.567226 | 3_1:+90309065 | None:intergenic |
| TTACTAGTAGATGAAGAAAG+AGG | 0.580251 | 3_1:+90309357 | None:intergenic |
| GTGAAGAATACCATTAGTGA+AGG | 0.584434 | 3_1:+90309142 | None:intergenic |
| TGTGAAAGCAAACCCATCAA+AGG | 0.587824 | 3_1:-90308920 | Msa0386540:CDS |
| CAATCTTGTTCTCTTCCTCG+AGG | 0.589849 | 3_1:-90309522 | Msa0386540:five_prime_UTR |
| TTCTCATGGAGACCAAGCTA+GGG | 0.591351 | 3_1:-90309242 | Msa0386540:CDS |
| AACTTTGAAAGTAGAAACAT+GGG | 0.596266 | 3_1:-90309401 | Msa0386540:exon |
| GGAAATTCTAGCTCCAAAGA+TGG | 0.597283 | 3_1:-90308744 | Msa0386540:CDS |
| GTCCCTAAATTGAAATCACA+AGG | 0.602399 | 3_1:-90308482 | Msa0386540:CDS |
| TTCTTTGGGCCATAACTTAG+GGG | 0.604761 | 3_1:+90309054 | None:intergenic |
| TGAGAATGGAGATAAGGTTG+AGG | 0.616111 | 3_1:-90308630 | Msa0386540:CDS |
| TTCACCACAAGCCATAGCAA+TGG | 0.617486 | 3_1:-90308960 | Msa0386540:CDS |
| TTGGTTAGATGACTAGAATG+AGG | 0.630874 | 3_1:+90309444 | None:intergenic |
| GTCACTTGGATACATCACAA+TGG | 0.635200 | 3_1:-90308595 | Msa0386540:CDS |
| ACTTGAAATGAAACATGACT+AGG | 0.655390 | 3_1:+90308569 | None:intergenic |
| AATTCTAGCTCCAAAGATGG+TGG | 0.662511 | 3_1:-90308741 | Msa0386540:CDS |
| AAGCAAACCCATCAAAGGAG+AGG | 0.675310 | 3_1:-90308915 | Msa0386540:CDS |
| GTGGTTAGATATAGGGACGG+AGG | 0.690895 | 3_1:+90308295 | None:intergenic |
| TGGGTGGTTAGATATAGGGA+CGG | 0.715649 | 3_1:+90308292 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGGGAATAAATTTTATATCT+TGG | - | chr3_1:90308513-90308532 | Msa0386540:CDS | 20.0% |
| !! | TAAATATTTAACATACCAGA+AGG | + | chr3_1:90308565-90308584 | None:intergenic | 20.0% |
| !!! | TGGGAATAAATTTTATATCT+TGG | - | chr3_1:90308513-90308532 | Msa0386540:CDS | 20.0% |
| !! | TAAATATTTAACATACCAGA+AGG | + | chr3_1:90308565-90308584 | None:intergenic | 20.0% |
| !! | AACTTTGAAAGTAGAAACAT+GGG | - | chr3_1:90308494-90308513 | Msa0386540:CDS | 25.0% |
| !!! | GAATTTTTTCAGTTTTCTCA+TGG | - | chr3_1:90308639-90308658 | Msa0386540:CDS | 25.0% |
| ! | TAATATTGATCCTTCACTAA+TGG | - | chr3_1:90308743-90308762 | Msa0386540:CDS | 25.0% |
| !! | ACTTTGAAAGATTTGAAAGT+AGG | - | chr3_1:90308774-90308793 | Msa0386540:CDS | 25.0% |
| !!! | ATTTTAGAAGATATGAGAGT+TGG | + | chr3_1:90308896-90308915 | None:intergenic | 25.0% |
| !! | TTTGCTTTCACATTCTTTTA+AGG | + | chr3_1:90308967-90308986 | None:intergenic | 25.0% |
| ! | GAATTTACACAAAACATTCT+TGG | - | chr3_1:90309038-90309057 | Msa0386540:CDS | 25.0% |
| ! | TTGAAAAGTAACACTTGATT+TGG | + | chr3_1:90309105-90309124 | None:intergenic | 25.0% |
| ! | CACTATAGTAGAAATTATGA+TGG | - | chr3_1:90309130-90309149 | Msa0386540:CDS | 25.0% |
| ! | TAAAAAACAGCATAAGGATA+AGG | + | chr3_1:90309194-90309213 | None:intergenic | 25.0% |
| ! | TGACAATAAAAAACAGCATA+AGG | + | chr3_1:90309200-90309219 | None:intergenic | 25.0% |
| !!! | TAGGGTGTATAAAGTTTTAT+TGG | - | chr3_1:90309238-90309257 | Msa0386540:CDS | 25.0% |
| !!! | AGGGTGTATAAAGTTTTATT+GGG | - | chr3_1:90309239-90309258 | Msa0386540:CDS | 25.0% |
| ! | AACCTTGTGATTTCAATTTA+GGG | + | chr3_1:90309418-90309437 | None:intergenic | 25.0% |
| !! | AACTTTGAAAGTAGAAACAT+GGG | - | chr3_1:90308494-90308513 | Msa0386540:CDS | 25.0% |
| !!! | GAATTTTTTCAGTTTTCTCA+TGG | - | chr3_1:90308639-90308658 | Msa0386540:CDS | 25.0% |
| ! | TAATATTGATCCTTCACTAA+TGG | - | chr3_1:90308743-90308762 | Msa0386540:CDS | 25.0% |
| !! | ACTTTGAAAGATTTGAAAGT+AGG | - | chr3_1:90308774-90308793 | Msa0386540:CDS | 25.0% |
| !!! | ATTTTAGAAGATATGAGAGT+TGG | + | chr3_1:90308896-90308915 | None:intergenic | 25.0% |
| !! | TTTGCTTTCACATTCTTTTA+AGG | + | chr3_1:90308967-90308986 | None:intergenic | 25.0% |
| ! | GAATTTACACAAAACATTCT+TGG | - | chr3_1:90309038-90309057 | Msa0386540:CDS | 25.0% |
| ! | TTGAAAAGTAACACTTGATT+TGG | + | chr3_1:90309105-90309124 | None:intergenic | 25.0% |
| ! | CACTATAGTAGAAATTATGA+TGG | - | chr3_1:90309130-90309149 | Msa0386540:CDS | 25.0% |
| ! | TAAAAAACAGCATAAGGATA+AGG | + | chr3_1:90309194-90309213 | None:intergenic | 25.0% |
| ! | TGACAATAAAAAACAGCATA+AGG | + | chr3_1:90309200-90309219 | None:intergenic | 25.0% |
| !!! | TAGGGTGTATAAAGTTTTAT+TGG | - | chr3_1:90309238-90309257 | Msa0386540:CDS | 25.0% |
| !!! | AGGGTGTATAAAGTTTTATT+GGG | - | chr3_1:90309239-90309258 | Msa0386540:CDS | 25.0% |
| ! | AACCTTGTGATTTCAATTTA+GGG | + | chr3_1:90309418-90309437 | None:intergenic | 25.0% |
| GCATTTCATTATGTTCTCTT+GGG | + | chr3_1:90308407-90308426 | None:intergenic | 30.0% | |
| AGCATTTCATTATGTTCTCT+TGG | + | chr3_1:90308408-90308427 | None:intergenic | 30.0% | |
| GAACATAATGAAATGCTAAC+TGG | - | chr3_1:90308411-90308430 | Msa0386540:three_prime_UTR | 30.0% | |
| ! | CAACTTTGAAAGTAGAAACA+TGG | - | chr3_1:90308493-90308512 | Msa0386540:CDS | 30.0% |
| TTACTAGTAGATGAAGAAAG+AGG | + | chr3_1:90308541-90308560 | None:intergenic | 30.0% | |
| GACTCATATGATTATGATGA+TGG | + | chr3_1:90308722-90308741 | None:intergenic | 30.0% | |
| ! | TTCAAGCATAGATTCTAAAG+AGG | + | chr3_1:90309021-90309040 | None:intergenic | 30.0% |
| ATAGTCAAGAAAGTGAGAAT+AGG | - | chr3_1:90309219-90309238 | Msa0386540:CDS | 30.0% | |
| TAGTCAAGAAAGTGAGAATA+GGG | - | chr3_1:90309220-90309239 | Msa0386540:CDS | 30.0% | |
| !!! | GGGTGTATAAAGTTTTATTG+GGG | - | chr3_1:90309240-90309259 | Msa0386540:CDS | 30.0% |
| !!! | GGTGTATAAAGTTTTATTGG+GGG | - | chr3_1:90309241-90309260 | Msa0386540:CDS | 30.0% |
| !!! | GTGTATAAAGTTTTATTGGG+GGG | - | chr3_1:90309242-90309261 | Msa0386540:CDS | 30.0% |
| ACTTGAAATGAAACATGACT+AGG | + | chr3_1:90309329-90309348 | None:intergenic | 30.0% | |
| !! | CATGTTTCATTTCAAGTTCT+TGG | - | chr3_1:90309332-90309351 | Msa0386540:intron | 30.0% |
| GAACCTTGTGATTTCAATTT+AGG | + | chr3_1:90309419-90309438 | None:intergenic | 30.0% | |
| GCATTTCATTATGTTCTCTT+GGG | + | chr3_1:90308407-90308426 | None:intergenic | 30.0% | |
| AGCATTTCATTATGTTCTCT+TGG | + | chr3_1:90308408-90308427 | None:intergenic | 30.0% | |
| GAACATAATGAAATGCTAAC+TGG | - | chr3_1:90308411-90308430 | Msa0386540:three_prime_UTR | 30.0% | |
| ! | CAACTTTGAAAGTAGAAACA+TGG | - | chr3_1:90308493-90308512 | Msa0386540:CDS | 30.0% |
| TTACTAGTAGATGAAGAAAG+AGG | + | chr3_1:90308541-90308560 | None:intergenic | 30.0% | |
| GACTCATATGATTATGATGA+TGG | + | chr3_1:90308722-90308741 | None:intergenic | 30.0% | |
| ! | TTCAAGCATAGATTCTAAAG+AGG | + | chr3_1:90309021-90309040 | None:intergenic | 30.0% |
| ATAGTCAAGAAAGTGAGAAT+AGG | - | chr3_1:90309219-90309238 | Msa0386540:CDS | 30.0% | |
| TAGTCAAGAAAGTGAGAATA+GGG | - | chr3_1:90309220-90309239 | Msa0386540:CDS | 30.0% | |
| !!! | GGGTGTATAAAGTTTTATTG+GGG | - | chr3_1:90309240-90309259 | Msa0386540:CDS | 30.0% |
| !!! | GGTGTATAAAGTTTTATTGG+GGG | - | chr3_1:90309241-90309260 | Msa0386540:CDS | 30.0% |
| !!! | GTGTATAAAGTTTTATTGGG+GGG | - | chr3_1:90309242-90309261 | Msa0386540:CDS | 30.0% |
| ACTTGAAATGAAACATGACT+AGG | + | chr3_1:90309329-90309348 | None:intergenic | 30.0% | |
| !! | CATGTTTCATTTCAAGTTCT+TGG | - | chr3_1:90309332-90309351 | Msa0386540:intron | 30.0% |
| GAACCTTGTGATTTCAATTT+AGG | + | chr3_1:90309419-90309438 | None:intergenic | 30.0% | |
| GGAAGAGAACAAGATTGAAA+AGG | + | chr3_1:90308370-90308389 | None:intergenic | 35.0% | |
| TTGGTTAGATGACTAGAATG+AGG | + | chr3_1:90308454-90308473 | None:intergenic | 35.0% | |
| TCATCTACTAGTAATCCTTC+TGG | - | chr3_1:90308547-90308566 | Msa0386540:CDS | 35.0% | |
| GTGAAGAATACCATTAGTGA+AGG | + | chr3_1:90308756-90308775 | None:intergenic | 35.0% | |
| ! | ATAACTTAGGGGAAGTTGAT+GGG | + | chr3_1:90308833-90308852 | None:intergenic | 35.0% |
| AGTGATTCAGCTTCTTCTTT+GGG | + | chr3_1:90308858-90308877 | None:intergenic | 35.0% | |
| AAGTGATTCAGCTTCTTCTT+TGG | + | chr3_1:90308859-90308878 | None:intergenic | 35.0% | |
| AAATTCTTCTCTTTCTCTCG+AGG | - | chr3_1:90308912-90308931 | Msa0386540:CDS | 35.0% | |
| AACTTAACCTCTCCTTTGAT+GGG | + | chr3_1:90308990-90309009 | None:intergenic | 35.0% | |
| TCACTTGGATACATCACAAT+GGG | - | chr3_1:90309301-90309320 | Msa0386540:intron | 35.0% | |
| GTCCCTAAATTGAAATCACA+AGG | - | chr3_1:90309413-90309432 | Msa0386540:five_prime_UTR | 35.0% | |
| TTTGTGTTCATGTGCTTCAA+TGG | - | chr3_1:90309490-90309509 | Msa0386540:five_prime_UTR | 35.0% | |
| GGAAGAGAACAAGATTGAAA+AGG | + | chr3_1:90308370-90308389 | None:intergenic | 35.0% | |
| TTGGTTAGATGACTAGAATG+AGG | + | chr3_1:90308454-90308473 | None:intergenic | 35.0% | |
| TCATCTACTAGTAATCCTTC+TGG | - | chr3_1:90308547-90308566 | Msa0386540:CDS | 35.0% | |
| GTGAAGAATACCATTAGTGA+AGG | + | chr3_1:90308756-90308775 | None:intergenic | 35.0% | |
| ! | ATAACTTAGGGGAAGTTGAT+GGG | + | chr3_1:90308833-90308852 | None:intergenic | 35.0% |
| AGTGATTCAGCTTCTTCTTT+GGG | + | chr3_1:90308858-90308877 | None:intergenic | 35.0% | |
| AAGTGATTCAGCTTCTTCTT+TGG | + | chr3_1:90308859-90308878 | None:intergenic | 35.0% | |
| AAATTCTTCTCTTTCTCTCG+AGG | - | chr3_1:90308912-90308931 | Msa0386540:CDS | 35.0% | |
| AACTTAACCTCTCCTTTGAT+GGG | + | chr3_1:90308990-90309009 | None:intergenic | 35.0% | |
| TCACTTGGATACATCACAAT+GGG | - | chr3_1:90309301-90309320 | Msa0386540:intron | 35.0% | |
| GTCCCTAAATTGAAATCACA+AGG | - | chr3_1:90309413-90309432 | Msa0386540:five_prime_UTR | 35.0% | |
| TTTGTGTTCATGTGCTTCAA+TGG | - | chr3_1:90309490-90309509 | Msa0386540:five_prime_UTR | 35.0% | |
| AACTCTTCACAGTTATCGCT+TGG | + | chr3_1:90308473-90308492 | None:intergenic | 40.0% | |
| TTTCAACCAATTCCCTAGCT+TGG | + | chr3_1:90308668-90308687 | None:intergenic | 40.0% | |
| CATAACTTAGGGGAAGTTGA+TGG | + | chr3_1:90308834-90308853 | None:intergenic | 40.0% | |
| CATCAACTTCCCCTAAGTTA+TGG | - | chr3_1:90308832-90308851 | Msa0386540:CDS | 40.0% | |
| TTCTTTGGGCCATAACTTAG+GGG | + | chr3_1:90308844-90308863 | None:intergenic | 40.0% | |
| CTTCTTTGGGCCATAACTTA+GGG | + | chr3_1:90308845-90308864 | None:intergenic | 40.0% | |
| TCTTCTTTGGGCCATAACTT+AGG | + | chr3_1:90308846-90308865 | None:intergenic | 40.0% | |
| !! | GAGAGTTGGTTTGATGAGAA+AGG | + | chr3_1:90308882-90308901 | None:intergenic | 40.0% |
| ! | TAAGGTGCTTTCCATTGCTA+TGG | + | chr3_1:90308949-90308968 | None:intergenic | 40.0% |
| TGTGAAAGCAAACCCATCAA+AGG | - | chr3_1:90308975-90308994 | Msa0386540:CDS | 40.0% | |
| GAACTTAACCTCTCCTTTGA+TGG | + | chr3_1:90308991-90309010 | None:intergenic | 40.0% | |
| TGTGCAAAGTTGCATAAGCT+TGG | + | chr3_1:90309079-90309098 | None:intergenic | 40.0% | |
| !! | GGAAATTCTAGCTCCAAAGA+TGG | - | chr3_1:90309151-90309170 | Msa0386540:CDS | 40.0% |
| !! | AATTCTAGCTCCAAAGATGG+TGG | - | chr3_1:90309154-90309173 | Msa0386540:CDS | 40.0% |
| TGAGAATGGAGATAAGGTTG+AGG | - | chr3_1:90309265-90309284 | Msa0386540:intron | 40.0% | |
| GTCACTTGGATACATCACAA+TGG | - | chr3_1:90309300-90309319 | Msa0386540:intron | 40.0% | |
| !!! | TGTGTGTCATTTTTTCCCAG+CGG | - | chr3_1:90309376-90309395 | Msa0386540:CDS | 40.0% |
| AACTCTTCACAGTTATCGCT+TGG | + | chr3_1:90308473-90308492 | None:intergenic | 40.0% | |
| TTTCAACCAATTCCCTAGCT+TGG | + | chr3_1:90308668-90308687 | None:intergenic | 40.0% | |
| CATAACTTAGGGGAAGTTGA+TGG | + | chr3_1:90308834-90308853 | None:intergenic | 40.0% | |
| CATCAACTTCCCCTAAGTTA+TGG | - | chr3_1:90308832-90308851 | Msa0386540:CDS | 40.0% | |
| TTCTTTGGGCCATAACTTAG+GGG | + | chr3_1:90308844-90308863 | None:intergenic | 40.0% | |
| CTTCTTTGGGCCATAACTTA+GGG | + | chr3_1:90308845-90308864 | None:intergenic | 40.0% | |
| TCTTCTTTGGGCCATAACTT+AGG | + | chr3_1:90308846-90308865 | None:intergenic | 40.0% | |
| !! | GAGAGTTGGTTTGATGAGAA+AGG | + | chr3_1:90308882-90308901 | None:intergenic | 40.0% |
| ! | TAAGGTGCTTTCCATTGCTA+TGG | + | chr3_1:90308949-90308968 | None:intergenic | 40.0% |
| TGTGAAAGCAAACCCATCAA+AGG | - | chr3_1:90308975-90308994 | Msa0386540:CDS | 40.0% | |
| GAACTTAACCTCTCCTTTGA+TGG | + | chr3_1:90308991-90309010 | None:intergenic | 40.0% | |
| TGTGCAAAGTTGCATAAGCT+TGG | + | chr3_1:90309079-90309098 | None:intergenic | 40.0% | |
| !! | GGAAATTCTAGCTCCAAAGA+TGG | - | chr3_1:90309151-90309170 | Msa0386540:CDS | 40.0% |
| !! | AATTCTAGCTCCAAAGATGG+TGG | - | chr3_1:90309154-90309173 | Msa0386540:CDS | 40.0% |
| TGAGAATGGAGATAAGGTTG+AGG | - | chr3_1:90309265-90309284 | Msa0386540:intron | 40.0% | |
| GTCACTTGGATACATCACAA+TGG | - | chr3_1:90309300-90309319 | Msa0386540:intron | 40.0% | |
| !!! | TGTGTGTCATTTTTTCCCAG+CGG | - | chr3_1:90309376-90309395 | Msa0386540:CDS | 40.0% |
| CAATCTTGTTCTCTTCCTCG+AGG | - | chr3_1:90308373-90308392 | Msa0386540:three_prime_UTR | 45.0% | |
| TTTCTCATGGAGACCAAGCT+AGG | - | chr3_1:90308652-90308671 | Msa0386540:CDS | 45.0% | |
| TTCTCATGGAGACCAAGCTA+GGG | - | chr3_1:90308653-90308672 | Msa0386540:CDS | 45.0% | |
| !! | GAAGTTGATGGGTCTCTCTT+AGG | + | chr3_1:90308822-90308841 | None:intergenic | 45.0% |
| TTCACCACAAGCCATAGCAA+TGG | - | chr3_1:90308935-90308954 | Msa0386540:CDS | 45.0% | |
| CTTTCCATTGCTATGGCTTG+TGG | + | chr3_1:90308942-90308961 | None:intergenic | 45.0% | |
| AAGCAAACCCATCAAAGGAG+AGG | - | chr3_1:90308980-90308999 | Msa0386540:CDS | 45.0% | |
| !! | GTTTTATTGGGGGGTGAGAA+TGG | - | chr3_1:90309251-90309270 | Msa0386540:intron | 45.0% |
| TGGAGATAAGGTTGAGGCTA+TGG | - | chr3_1:90309271-90309290 | Msa0386540:intron | 45.0% | |
| AGATAAGGTTGAGGCTATGG+TGG | - | chr3_1:90309274-90309293 | Msa0386540:intron | 45.0% | |
| TCCCAGCGGACAATTACATT+TGG | - | chr3_1:90309390-90309409 | Msa0386540:exon | 45.0% | |
| CCCAAATGTAATTGTCCGCT+GGG | + | chr3_1:90309394-90309413 | None:intergenic | 45.0% | |
| CCCAGCGGACAATTACATTT+GGG | - | chr3_1:90309391-90309410 | Msa0386540:exon | 45.0% | |
| ACCCAAATGTAATTGTCCGC+TGG | + | chr3_1:90309395-90309414 | None:intergenic | 45.0% | |
| CAATCTTGTTCTCTTCCTCG+AGG | - | chr3_1:90308373-90308392 | Msa0386540:three_prime_UTR | 45.0% | |
| TTTCTCATGGAGACCAAGCT+AGG | - | chr3_1:90308652-90308671 | Msa0386540:CDS | 45.0% | |
| TTCTCATGGAGACCAAGCTA+GGG | - | chr3_1:90308653-90308672 | Msa0386540:CDS | 45.0% | |
| !! | GAAGTTGATGGGTCTCTCTT+AGG | + | chr3_1:90308822-90308841 | None:intergenic | 45.0% |
| TTCACCACAAGCCATAGCAA+TGG | - | chr3_1:90308935-90308954 | Msa0386540:CDS | 45.0% | |
| CTTTCCATTGCTATGGCTTG+TGG | + | chr3_1:90308942-90308961 | None:intergenic | 45.0% | |
| AAGCAAACCCATCAAAGGAG+AGG | - | chr3_1:90308980-90308999 | Msa0386540:CDS | 45.0% | |
| !! | GTTTTATTGGGGGGTGAGAA+TGG | - | chr3_1:90309251-90309270 | Msa0386540:intron | 45.0% |
| TGGAGATAAGGTTGAGGCTA+TGG | - | chr3_1:90309271-90309290 | Msa0386540:intron | 45.0% | |
| AGATAAGGTTGAGGCTATGG+TGG | - | chr3_1:90309274-90309293 | Msa0386540:intron | 45.0% | |
| TCCCAGCGGACAATTACATT+TGG | - | chr3_1:90309390-90309409 | Msa0386540:exon | 45.0% | |
| CCCAAATGTAATTGTCCGCT+GGG | + | chr3_1:90309394-90309413 | None:intergenic | 45.0% | |
| CCCAGCGGACAATTACATTT+GGG | - | chr3_1:90309391-90309410 | Msa0386540:exon | 45.0% | |
| ACCCAAATGTAATTGTCCGC+TGG | + | chr3_1:90309395-90309414 | None:intergenic | 45.0% | |
| !!! | GATTATTATAAAATTTTATT+TGG | + | chr3_1:90308326-90308345 | None:intergenic | 5.0% |
| !!! | GATTATTATAAAATTTTATT+TGG | + | chr3_1:90308326-90308345 | None:intergenic | 5.0% |
| ! | TCTTGGGCACATTTTCCTCG+AGG | + | chr3_1:90308391-90308410 | None:intergenic | 50.0% |
| TGGAGACCAAGCTAGGGAAT+TGG | - | chr3_1:90308659-90308678 | Msa0386540:CDS | 50.0% | |
| GTGTGACAAGCCACCATCTT+TGG | + | chr3_1:90309167-90309186 | None:intergenic | 50.0% | |
| ! | GGCTATGGTGGTTTGTCACT+TGG | - | chr3_1:90309286-90309305 | Msa0386540:intron | 50.0% |
| !! | CAAGTTCTTGGTGTCACACC+AGG | - | chr3_1:90309344-90309363 | Msa0386540:intron | 50.0% |
| TGACACACAGAAGAGCTTCC+TGG | + | chr3_1:90309365-90309384 | None:intergenic | 50.0% | |
| ! | TCTTGGGCACATTTTCCTCG+AGG | + | chr3_1:90308391-90308410 | None:intergenic | 50.0% |
| TGGAGACCAAGCTAGGGAAT+TGG | - | chr3_1:90308659-90308678 | Msa0386540:CDS | 50.0% | |
| GTGTGACAAGCCACCATCTT+TGG | + | chr3_1:90309167-90309186 | None:intergenic | 50.0% | |
| ! | GGCTATGGTGGTTTGTCACT+TGG | - | chr3_1:90309286-90309305 | Msa0386540:intron | 50.0% |
| !! | CAAGTTCTTGGTGTCACACC+AGG | - | chr3_1:90309344-90309363 | Msa0386540:intron | 50.0% |
| TGACACACAGAAGAGCTTCC+TGG | + | chr3_1:90309365-90309384 | None:intergenic | 50.0% | |
| GGGGGGTGAGAATGGAGATA+AGG | - | chr3_1:90309259-90309278 | Msa0386540:intron | 55.0% | |
| GGGGGGTGAGAATGGAGATA+AGG | - | chr3_1:90309259-90309278 | Msa0386540:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 90308300 | 90309617 | 90308300 | ID=Msa0386540;Name=Msa0386540 |
| chr3_1 | mRNA | 90308300 | 90309617 | 90308300 | ID=Msa0386540-mRNA-1;Parent=Msa0386540;Name=Msa0386540-mRNA-1;_AED=0.02;_eAED=0.02;_QI=212|1|1|1|1|1|2|166|285 |
| chr3_1 | exon | 90308300 | 90309266 | 90308300 | ID=Msa0386540-mRNA-1:exon:24961;Parent=Msa0386540-mRNA-1 |
| chr3_1 | exon | 90309349 | 90309617 | 90309349 | ID=Msa0386540-mRNA-1:exon:24960;Parent=Msa0386540-mRNA-1 |
| chr3_1 | five_prime_UTR | 90309406 | 90309617 | 90309406 | ID=Msa0386540-mRNA-1:five_prime_utr;Parent=Msa0386540-mRNA-1 |
| chr3_1 | CDS | 90309349 | 90309405 | 90309349 | ID=Msa0386540-mRNA-1:cds;Parent=Msa0386540-mRNA-1 |
| chr3_1 | CDS | 90308466 | 90309266 | 90308466 | ID=Msa0386540-mRNA-1:cds;Parent=Msa0386540-mRNA-1 |
| chr3_1 | three_prime_UTR | 90308300 | 90308465 | 90308300 | ID=Msa0386540-mRNA-1:three_prime_utr;Parent=Msa0386540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
