AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0628290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0628290 MtrunA17_Chr4g0004131 89.646 396 2 3 1 357 1 396 0.0 709
Msa0628290 MtrunA17_Chr7g0267911 29.830 352 217 10 27 355 129 473 1.87e-36 137
Msa0628290 MtrunA17_Chr8g0382671 30.312 353 214 12 27 355 131 475 3.67e-36 136
Msa0628290 MtrunA17_Chr1g0195061 24.719 267 190 4 55 314 85 347 2.74e-17 82.4
Msa0628290 MtrunA17_Chr3g0114811 25.000 308 208 12 55 348 147 445 7.98e-16 78.2
Msa0628290 MtrunA17_Chr3g0114831 25.733 307 205 11 56 348 511 808 3.59e-15 77.0
Msa0628290 MtrunA17_Chr3g0114831 24.906 265 157 12 58 313 97 328 4.33e-11 64.3
Msa0628290 MtrunA17_Chr6g0488041 24.179 335 208 13 44 343 108 431 5.00e-14 72.8
Msa0628290 MtrunA17_Chr2g0278911 30.769 247 148 12 111 343 199 436 1.05e-12 68.9
Msa0628290 MtrunA17_Chr8g0387481 22.324 327 215 12 49 343 113 432 5.18e-12 67.0
Msa0628290 MtrunA17_Chr5g0400831 22.630 327 202 10 58 343 114 430 1.81e-11 65.1
Msa0628290 MtrunA17_Chr8g0345201 27.313 227 125 10 128 318 263 485 6.66e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0628290 AT1G80360.3 61.266 395 113 4 1 356 1 394 0.0 507
Msa0628290 AT1G80360.2 61.266 395 113 4 1 356 1 394 0.0 507
Msa0628290 AT1G80360.4 61.266 395 113 4 1 356 1 394 0.0 507
Msa0628290 AT1G80360.1 61.266 395 113 4 1 356 1 394 0.0 507
Msa0628290 AT2G22250.1 28.571 343 217 9 31 351 88 424 6.52e-36 135
Msa0628290 AT2G22250.3 28.571 343 217 9 31 351 135 471 1.20e-35 135
Msa0628290 AT2G22250.2 28.571 343 217 9 31 351 135 471 1.20e-35 135
Msa0628290 AT2G13810.1 26.488 336 194 14 52 352 128 445 2.94e-14 73.9
Msa0628290 AT2G24850.1 23.377 308 217 9 53 343 112 417 1.08e-12 69.3
Msa0628290 AT1G72330.3 26.432 227 127 8 128 318 292 514 2.71e-12 68.2
Msa0628290 AT1G72330.1 26.432 227 127 8 128 318 279 501 2.84e-12 68.2
Msa0628290 AT4G26200.1 23.385 325 203 13 58 347 129 442 2.88e-12 68.2
Msa0628290 AT5G36160.1 24.490 294 203 8 52 328 104 395 4.00e-12 67.4
Msa0628290 AT4G11280.1 23.324 343 217 15 36 343 102 433 1.08e-11 66.2
Msa0628290 AT4G33680.1 29.050 179 116 4 129 297 236 413 2.08e-11 65.5
Msa0628290 AT2G20610.1 22.222 324 231 9 39 343 112 433 8.89e-11 63.5

Find 147 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATAAAGATTCTAACTTTA+AGG 0.084885 4_3:+8873485 None:intergenic
ACCCTTATAGATTTGGATTA+AGG 0.203260 4_3:-8873354 Msa0628290:five_prime_UTR
TTTATTTCAAAACACAAAAT+TGG 0.214284 4_3:-8873204 Msa0628290:five_prime_UTR
CTCGGAGAAGGTTCTATTAA+AGG 0.220827 4_3:-8868294 Msa0628290:CDS
GCATCTGGATAAAGTGTTTC+CGG 0.228182 4_3:+8870754 None:intergenic
TACCTTAATCCAAATCTATA+AGG 0.234109 4_3:+8873352 None:intergenic
TGGATTAAGGTATAGATTAA+TGG 0.257872 4_3:-8873341 Msa0628290:five_prime_UTR
ATCTATAAGGGTAAGTTAAA+AGG 0.275055 4_3:+8873365 None:intergenic
ACTCGTTCGGTAACCCATTC+AGG 0.279683 4_3:+8868366 None:intergenic
ACCTTATCCAATGCTTGCTT+TGG 0.280175 4_3:+8871637 None:intergenic
TGCACTCTACTCCTTAGAAT+TGG 0.283839 4_3:-8868391 Msa0628290:CDS
GTGATTAAAATAATATAAAA+AGG 0.288787 4_3:-8873394 Msa0628290:five_prime_UTR
AATAAAGATTCTAACTTTAA+GGG 0.293059 4_3:+8873486 None:intergenic
TTAACTTACCCTTATAGATT+TGG 0.295533 4_3:-8873361 Msa0628290:five_prime_UTR
TTCATTACCTTAACCATAAT+AGG 0.298622 4_3:+8873093 None:intergenic
AATGCAGACAAAATGATAAA+AGG 0.322789 4_3:+8873730 None:intergenic
AAAAGAAAGATGGGTTCTTA+TGG 0.325486 4_3:-8873150 Msa0628290:exon
TTATCCAATGCTTGCTTTGG+AGG 0.330963 4_3:+8871640 None:intergenic
TAAGAAAGGTTTGGAAGAAT+TGG 0.333107 4_3:-8868076 Msa0628290:CDS
CTTCTTCAACAAGACTTCAT+TGG 0.336883 4_3:-8873234 Msa0628290:five_prime_UTR
GGTGCATTTGAATAAATGTT+AGG 0.346395 4_3:-8867953 Msa0628290:three_prime_UTR
GCAGCACCGCACGCACTTCC+AGG 0.349728 4_3:+8868165 None:intergenic
GACATACACATTGGAGAGTT+TGG 0.351569 4_3:+8867630 None:intergenic
TTGTTCGCTGGCTAGCTAAT+AGG 0.359579 4_3:-8868206 Msa0628290:CDS
TTTACAATAGTTACTAGCTT+CGG 0.361088 4_3:+8869925 None:intergenic
TTCTCTTTCTCGAAAGCATA+TGG 0.362086 4_3:-8869270 Msa0628290:CDS
TTTGCACAAATCCTCGGTTA+TGG 0.370716 4_3:-8871075 Msa0628290:CDS
ATAAAGTGTTTCCGGGTTAC+CGG 0.370893 4_3:+8870762 None:intergenic
TATTAGTAATGCCAGTCATT+TGG 0.379610 4_3:+8870797 None:intergenic
GGAAACTGAGATGCCTATTA+TGG 0.380670 4_3:-8873106 Msa0628290:CDS
CCATTCAGGTCCCAATTCTA+AGG 0.385511 4_3:+8868380 None:intergenic
GCATACCCTTCTGAAGTAGA+AGG 0.386056 4_3:-8868483 Msa0628290:CDS
GGATGTCGACGTGTCTATAT+CGG 0.393386 4_3:-8873816 Msa0628290:five_prime_UTR
TGAGATGCCTATTATGGTTA+AGG 0.394646 4_3:-8873100 Msa0628290:intron
GAGAAGGAGCTATATACCTT+TGG 0.395158 4_3:-8868269 Msa0628290:CDS
GTAAATCCTGGCAATCCAAC+TGG 0.395490 4_3:-8869907 Msa0628290:CDS
ATATGTTTATGCTTCATGAT+TGG 0.400652 4_3:-8867821 Msa0628290:three_prime_UTR
GGAAGTGCGTGCGGTGCTGC+TGG 0.401509 4_3:-8868162 Msa0628290:CDS
TTGGAGGCCCTTTCTTCTCT+CGG 0.402434 4_3:-8868312 Msa0628290:CDS
CTTAGAATTGGGACCTGAAT+GGG 0.407280 4_3:-8868379 Msa0628290:CDS
AAAACGTAAACCACAACAAA+AGG 0.412506 4_3:+8873257 None:intergenic
GAAATTATTGAAGCACAGAT+TGG 0.414853 4_3:+8868423 None:intergenic
GCAATGACTTTACCTGCATC+TGG 0.415721 4_3:+8870739 None:intergenic
CATCTGGATAAAGTGTTTCC+GGG 0.418128 4_3:+8870755 None:intergenic
TTACAATAGTTACTAGCTTC+GGG 0.420849 4_3:+8869926 None:intergenic
GGAATGATGGGATGGCGAAT+TGG 0.421184 4_3:-8869249 Msa0628290:CDS
GGTTACAGCCGGTGCCAATC+AGG 0.424776 4_3:-8871054 Msa0628290:intron
TTGTGTGTCGTGTGTGTGTC+TGG 0.428415 4_3:+8873696 None:intergenic
TAGGTTCCAGTTGGATTGCC+AGG 0.430279 4_3:+8869901 None:intergenic
ACCTTAATCCAAATCTATAA+GGG 0.431837 4_3:+8873353 None:intergenic
GGAAATCTTAGAATCTCGTT+TGG 0.435661 4_3:-8868141 Msa0628290:CDS
GCACTCTACTCCTTAGAATT+GGG 0.437159 4_3:-8868390 Msa0628290:CDS
CGTATCATATGTGTCAGTTT+CGG 0.440018 4_3:+8873879 None:intergenic
CTAGTAACTATTGTAAATCC+TGG 0.440627 4_3:-8869919 Msa0628290:CDS
CTCGAAAGCATATGGAATGA+TGG 0.442266 4_3:-8869262 Msa0628290:CDS
AGAAAGGCTTAAGAAAGGTT+TGG 0.446109 4_3:-8868085 Msa0628290:CDS
CCTTAGAATTGGGACCTGAA+TGG 0.449662 4_3:-8868380 Msa0628290:CDS
AGAAGGAGCTATATACCTTT+GGG 0.455675 4_3:-8868268 Msa0628290:CDS
CACAGATTGGAATGTTGTCT+TGG 0.456455 4_3:+8868436 None:intergenic
CAACTTATCAACTAAGTAGT+TGG 0.458933 4_3:-8867743 Msa0628290:three_prime_UTR
AGAATTGGTTGCACATGGTT+TGG 0.459653 4_3:-8868061 Msa0628290:CDS
GCCCTTTCTTCTCTCGGAGA+AGG 0.462214 4_3:-8868306 Msa0628290:CDS
GAGACCTTTAGAAGAGACTC+TGG 0.464117 4_3:+8869874 None:intergenic
CTCAAAACGATGATTCACTT+TGG 0.470314 4_3:+8873758 None:intergenic
AGGTATAGATTAATGGTGGA+TGG 0.473431 4_3:-8873334 Msa0628290:five_prime_UTR
AGCTGGCTCTTGGCTTGTTG+TGG 0.474046 4_3:-8869675 Msa0628290:CDS
TTCAGCCTTGTTAAGTTGGA+GGG 0.475369 4_3:-8867923 Msa0628290:three_prime_UTR
CCTTCTGAAGTAGAAGGGCT+TGG 0.476025 4_3:-8868477 Msa0628290:CDS
GTTCTTACTCTATGTGATGC+GGG 0.477132 4_3:-8870871 Msa0628290:CDS
TGTCTTGGACTTTGAGAAGT+TGG 0.477434 4_3:+8868451 None:intergenic
AATCTTAGAATCTCGTTTGG+AGG 0.482371 4_3:-8868138 Msa0628290:CDS
TAGAAGAGACTCTGGAATGT+AGG 0.483849 4_3:+8869882 None:intergenic
GTCTTGGACTTTGAGAAGTT+GGG 0.486069 4_3:+8868452 None:intergenic
CACGGGATTGCTGTTATCCC+TGG 0.486363 4_3:-8868183 Msa0628290:CDS
ACCTTCTCCGAGAGAAGAAA+GGG 0.488063 4_3:+8868305 None:intergenic
GGCATTACTAATATACTAGT+TGG 0.491503 4_3:-8870787 Msa0628290:CDS
ATGTATGAATTGAAGTAGTA+AGG 0.492382 4_3:+8870826 None:intergenic
TAGATTAATGGTGGATGGGT+TGG 0.493650 4_3:-8873329 Msa0628290:five_prime_UTR
GAACAGACAAATTGTCTTGG+AGG 0.501204 4_3:-8868328 Msa0628290:CDS
AAACGTAAACCACAACAAAA+GGG 0.508221 4_3:+8873258 None:intergenic
GGTTCTATTAAAGGAGGAGA+AGG 0.509181 4_3:-8868285 Msa0628290:CDS
TCCAAAGCAAGCATTGGATA+AGG 0.512289 4_3:-8871638 Msa0628290:intron
CATTCCAGAGTCTCTTCTAA+AGG 0.515139 4_3:-8869878 Msa0628290:intron
GCAGCAGAAAGGCTTAAGAA+AGG 0.515657 4_3:-8868090 Msa0628290:CDS
TTTCAGCCTTGTTAAGTTGG+AGG 0.515891 4_3:-8867924 Msa0628290:three_prime_UTR
TTATGGAAATCTTGCAAAGA+GGG 0.518324 4_3:-8873133 Msa0628290:CDS
TAAAGTGTTTCCGGGTTACC+GGG 0.520274 4_3:+8870763 None:intergenic
AATATGTGTTCCTAAGAAAG+TGG 0.524599 4_3:+8873651 None:intergenic
AAATAATTTGCACAAATCCT+CGG 0.526185 4_3:-8871081 Msa0628290:CDS
TTGTTTGAAGTGTGAATGCA+TGG 0.527497 4_3:+8873539 None:intergenic
TGTGTGAGAAAGCTGGCTCT+TGG 0.527663 4_3:-8869685 Msa0628290:CDS
ACTAGTTGGTCCCGGTAACC+CGG 0.528968 4_3:-8870773 Msa0628290:CDS
ATAGTTACTAGCTTCGGGAC+AGG 0.530753 4_3:+8869931 None:intergenic
AACCTTCTCCGAGAGAAGAA+AGG 0.530812 4_3:+8868304 None:intergenic
CAGTGGAGAAAATTTGCAGC+TGG 0.531636 4_3:-8867974 Msa0628290:three_prime_UTR
CGCTGGCTAGCTAATAGGCA+CGG 0.532935 4_3:-8868201 Msa0628290:CDS
GCAAATCTGTGTGAGAAAGC+TGG 0.534379 4_3:-8869692 Msa0628290:CDS
TCGAAAGCATATGGAATGAT+GGG 0.535229 4_3:-8869261 Msa0628290:CDS
ATAAGTTGTTACTATTGTGA+AGG 0.536410 4_3:+8867758 None:intergenic
GTGGATGGGTTGGTGAAGAG+TGG 0.539354 4_3:-8873319 Msa0628290:five_prime_UTR
ATGATTTCGAAGTTGTTCGC+TGG 0.540586 4_3:-8868218 Msa0628290:CDS
TCATCGTAACCATGTCCGCT+TGG 0.540923 4_3:+8868237 None:intergenic
CCAAGCCCTTCTACTTCAGA+AGG 0.541143 4_3:+8868477 None:intergenic
TACATGTCCTTCCAAATGAC+TGG 0.541298 4_3:-8870808 Msa0628290:CDS
TCCTCGGTTATGGTTACAGC+CGG 0.542897 4_3:-8871065 Msa0628290:CDS
GGTATAGATTAATGGTGGAT+GGG 0.543265 4_3:-8873333 Msa0628290:five_prime_UTR
TAAGAACAGACAAATTGTCT+TGG 0.553853 4_3:-8868331 Msa0628290:CDS
GCAACCTCCAAAGCAAGCAT+TGG 0.556771 4_3:-8871644 Msa0628290:CDS
GCACGACGACACAACACAGT+TGG 0.558882 4_3:+8867608 None:intergenic
TTGAAACACACTTGTGTGGA+AGG 0.559943 4_3:-8869312 Msa0628290:CDS
GAAACACTTTATCCAGATGC+AGG 0.561975 4_3:-8870751 Msa0628290:intron
TTCTTACTCTATGTGATGCG+GGG 0.568076 4_3:-8870870 Msa0628290:CDS
ATTAAGGTATAGATTAATGG+TGG 0.570389 4_3:-8873338 Msa0628290:five_prime_UTR
CGCTTGGAATCTTCACCCAA+AGG 0.571691 4_3:+8868253 None:intergenic
ATTGTAGAGCAGCAGCAGAA+AGG 0.574501 4_3:-8868101 Msa0628290:CDS
CAGCACCGCACGCACTTCCA+GGG 0.574596 4_3:+8868166 None:intergenic
AGTTCTTACTCTATGTGATG+CGG 0.575309 4_3:-8870872 Msa0628290:CDS
ATTGATCACCTGATTGGCAC+CGG 0.577365 4_3:+8871046 None:intergenic
TCTGGAATGTAGGTTCCAGT+TGG 0.581009 4_3:+8869892 None:intergenic
TTGGAAGAATTGGTTGCACA+TGG 0.587231 4_3:-8868066 Msa0628290:CDS
AAATCTTGCAAAGAGGGCTG+TGG 0.590141 4_3:-8873127 Msa0628290:CDS
ATATGTGTTCCTAAGAAAGT+GGG 0.591684 4_3:+8873652 None:intergenic
AGTAATGCCAGTCATTTGGA+AGG 0.592869 4_3:+8870801 None:intergenic
GTGAAGATTCCAAGCGGACA+TGG 0.596507 4_3:-8868246 Msa0628290:CDS
CATACCCTTCTGAAGTAGAA+GGG 0.598726 4_3:-8868482 Msa0628290:CDS
TAAGTTGGAGGGTACTAACA+AGG 0.603449 4_3:-8867912 Msa0628290:three_prime_UTR
GCTGGCTAGCTAATAGGCAC+GGG 0.607361 4_3:-8868200 Msa0628290:CDS
TCTTACTCTATGTGATGCGG+GGG 0.608176 4_3:-8870869 Msa0628290:CDS
AAGCATATGGAATGATGGGA+TGG 0.610773 4_3:-8869257 Msa0628290:CDS
ACTAATATACTAGTTGGTCC+CGG 0.618345 4_3:-8870781 Msa0628290:CDS
TAGTACCCTCCAACTTAACA+AGG 0.620882 4_3:+8867918 None:intergenic
TGCGTTAAAGAAACGCATAG+AGG 0.623347 4_3:-8873455 Msa0628290:five_prime_UTR
CTTATGGAAATCTTGCAAAG+AGG 0.623657 4_3:-8873134 Msa0628290:CDS
TGATCACACTCTTTAGAGCA+TGG 0.628558 4_3:-8867690 Msa0628290:three_prime_UTR
TGATTTGAAACACACTTGTG+TGG 0.632329 4_3:-8869316 Msa0628290:CDS
AACGTAAACCACAACAAAAG+GGG 0.639347 4_3:+8873259 None:intergenic
ACACAGTTGGACATACACAT+TGG 0.645927 4_3:+8867621 None:intergenic
ATTCTAAGGAGTAGAGTGCA+AGG 0.647441 4_3:+8868394 None:intergenic
TGTTTGAAGTGTGAATGCAT+GGG 0.652215 4_3:+8873540 None:intergenic
GTTATCCCTGGAAGTGCGTG+CGG 0.652820 4_3:-8868171 Msa0628290:CDS
AAGAAAAGTCCATTTGCCAG+TGG 0.658547 4_3:-8867991 Msa0628290:three_prime_UTR
GGAGAAGGTTCTATTAAAGG+AGG 0.660414 4_3:-8868291 Msa0628290:CDS
CAAGCCCTTCTACTTCAGAA+GGG 0.667050 4_3:+8868478 None:intergenic
CAGATGCAGGAATTGCTACG+AGG 0.695721 4_3:-8872976 Msa0628290:CDS
ACCGGCTGTAACCATAACCG+AGG 0.713175 4_3:+8871064 None:intergenic
GTAAGGAGCATACATAACCA+CGG 0.721488 4_3:+8870843 None:intergenic
CTTTGGGTGAAGATTCCAAG+CGG 0.736255 4_3:-8868252 Msa0628290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCTTCAAATTATTA+TGG - chr4_3:8867642-8867661 Msa0628290:three_prime_UTR 10.0%
!! GTGATTAAAATAATATAAAA+AGG - chr4_3:8868085-8868104 Msa0628290:CDS 10.0%
!!! CTAATTTATAATTTTAACAT+TGG + chr4_3:8868984-8869003 None:intergenic 10.0%
!! TAGTTTATAATTAAAAACAT+TGG + chr4_3:8869048-8869067 None:intergenic 10.0%
!! AATAAAGATTCTAACTTTAA+GGG + chr4_3:8867996-8868015 None:intergenic 15.0%
!! TAATAAAGATTCTAACTTTA+AGG + chr4_3:8867997-8868016 None:intergenic 15.0%
!! TTTATTTCAAAACACAAAAT+TGG - chr4_3:8868275-8868294 Msa0628290:CDS 15.0%
!!! AAAATTGGAATTTTTTTCTT+TGG - chr4_3:8868290-8868309 Msa0628290:CDS 15.0%
!!! ATTTTGAGAAAAAGAAAAAA+TGG - chr4_3:8868822-8868841 Msa0628290:intron 15.0%
!!! AATTATAAATTAGTCTAGAT+TGG - chr4_3:8868991-8869010 Msa0628290:intron 15.0%
!! ATATATGATATATCTAGAAA+CGG - chr4_3:8869487-8869506 Msa0628290:intron 15.0%
!! TACAAAAAATTATTGTCAAT+AGG + chr4_3:8870307-8870326 None:intergenic 15.0%
!!! ATTTTTTTTTTTTCCCTTTA+AGG - chr4_3:8870835-8870854 Msa0628290:CDS 15.0%
!!! TTTTTTTTTTTTCCCTTTAA+GGG - chr4_3:8870836-8870855 Msa0628290:CDS 15.0%
!!! ATATCAAATTTTATTGTGAT+AGG - chr4_3:8870972-8870991 Msa0628290:intron 15.0%
!! GATTTATTTCATTAATGTAA+AGG + chr4_3:8871871-8871890 None:intergenic 15.0%
!! AACACTAAAATTGAATTAAT+GGG - chr4_3:8871953-8871972 Msa0628290:intron 15.0%
!! TTTCATAAAAATTTGTCAAT+TGG + chr4_3:8872332-8872351 None:intergenic 15.0%
!! GATACAAAATATTAAGTTAA+AGG + chr4_3:8872462-8872481 None:intergenic 15.0%
!!! ATGCTAATTTTAATGAATTA+GGG + chr4_3:8872676-8872695 None:intergenic 15.0%
!!! TATGCTAATTTTAATGAATT+AGG + chr4_3:8872677-8872696 None:intergenic 15.0%
!!! ATGCTAATTTTAATGAATTA+GGG + chr4_3:8872676-8872695 None:intergenic 15.0%
!!! TATGCTAATTTTAATGAATT+AGG + chr4_3:8872677-8872696 None:intergenic 15.0%
!!! ATATATTAGTTGTTACTTAA+GGG + chr4_3:8872921-8872940 None:intergenic 15.0%
!!! TTGAATTCTTTTTGTTAAGT+AGG - chr4_3:8868193-8868212 Msa0628290:CDS 20.0%
!!! TGAATTCTTTTTGTTAAGTA+GGG - chr4_3:8868194-8868213 Msa0628290:CDS 20.0%
!!! TTTTATTTTTTGTCTCTCAT+TGG - chr4_3:8868414-8868433 Msa0628290:CDS 20.0%
!!! TTTATTTTTTGTCTCTCATT+GGG - chr4_3:8868415-8868434 Msa0628290:CDS 20.0%
!! TGATATGTTTAATGAGTATT+TGG - chr4_3:8868441-8868460 Msa0628290:CDS 20.0%
!!! ATTAATTGTGTTGATTTCAA+TGG - chr4_3:8868661-8868680 Msa0628290:intron 20.0%
!! CCATTAACTACAATTAATAA+GGG + chr4_3:8868713-8868732 None:intergenic 20.0%
!! TCCATTAACTACAATTAATA+AGG + chr4_3:8868714-8868733 None:intergenic 20.0%
!! TGGATGAAATTCAATAAATA+AGG - chr4_3:8868744-8868763 Msa0628290:intron 20.0%
!! GGATGAAATTCAATAAATAA+GGG - chr4_3:8868745-8868764 Msa0628290:intron 20.0%
!!! AATAAATAAGGGTATAGTAA+TGG - chr4_3:8868756-8868775 Msa0628290:intron 20.0%
!! AAAAATAATAAATGCTGCAT+TGG - chr4_3:8868781-8868800 Msa0628290:intron 20.0%
!!! TATTATAAATTAGTCTAGCT+TGG - chr4_3:8868914-8868933 Msa0628290:intron 20.0%
!! TATATGATATATCTAGAAAC+GGG - chr4_3:8869488-8869507 Msa0628290:intron 20.0%
!! AAATATCCCAAAATTGAAAA+GGG - chr4_3:8869642-8869661 Msa0628290:intron 20.0%
!!! ATAGCAATTTTTAGAAACAT+AGG + chr4_3:8869713-8869732 None:intergenic 20.0%
!! TCAAATAAGCTAATCTAAAT+AGG + chr4_3:8869968-8869987 None:intergenic 20.0%
!!! AATAAGTTGAAAAAAGCTTA+TGG + chr4_3:8870059-8870078 None:intergenic 20.0%
!!! TGTGATTACTTTTACTTATA+GGG - chr4_3:8870256-8870275 Msa0628290:intron 20.0%
!! AAAAAAAAAAAATCCCTCTT+AGG + chr4_3:8870828-8870847 None:intergenic 20.0%
!!! TTTTTTTTTTTCCCTTTAAG+GGG - chr4_3:8870837-8870856 Msa0628290:CDS 20.0%
!!! GGTTTTACTTTTAAGAAATT+GGG - chr4_3:8870859-8870878 Msa0628290:CDS 20.0%
!! TGAAAATAACTCTACAATAT+TGG + chr4_3:8871347-8871366 None:intergenic 20.0%
!! GAGAAAATGAATATATCATT+TGG + chr4_3:8871710-8871729 None:intergenic 20.0%
!!! AATTTTAGTGTTGTTATCAA+AGG + chr4_3:8871945-8871964 None:intergenic 20.0%
!! CAACACTAAAATTGAATTAA+TGG - chr4_3:8871952-8871971 Msa0628290:intron 20.0%
!!! ATGTAATTAACCTTTTTGAA+TGG + chr4_3:8872613-8872632 None:intergenic 20.0%
!!! GATATATTAGTTGTTACTTA+AGG + chr4_3:8872922-8872941 None:intergenic 20.0%
! AATGCAGACAAAATGATAAA+AGG + chr4_3:8867752-8867771 None:intergenic 25.0%
! AAGTTGAAGAAAAAGACAAA+GGG + chr4_3:8867899-8867918 None:intergenic 25.0%
! AAAGTTGAAGAAAAAGACAA+AGG + chr4_3:8867900-8867919 None:intergenic 25.0%
! TTTAAGGGTTGTTGAAAAAT+GGG + chr4_3:8867981-8868000 None:intergenic 25.0%
! ATCTATAAGGGTAAGTTAAA+AGG + chr4_3:8868117-8868136 None:intergenic 25.0%
! TTAACTTACCCTTATAGATT+TGG - chr4_3:8868118-8868137 Msa0628290:CDS 25.0%
! ACCTTAATCCAAATCTATAA+GGG + chr4_3:8868129-8868148 None:intergenic 25.0%
! TACCTTAATCCAAATCTATA+AGG + chr4_3:8868130-8868149 None:intergenic 25.0%
! TGGATTAAGGTATAGATTAA+TGG - chr4_3:8868138-8868157 Msa0628290:CDS 25.0%
! ATTAAGGTATAGATTAATGG+TGG - chr4_3:8868141-8868160 Msa0628290:CDS 25.0%
!!! TTTTTGAGTGAAAAGAAAGA+TGG - chr4_3:8868319-8868338 Msa0628290:CDS 25.0%
!!! TTTTGAGTGAAAAGAAAGAT+GGG - chr4_3:8868320-8868339 Msa0628290:CDS 25.0%
! TTCATTACCTTAACCATAAT+AGG + chr4_3:8868389-8868408 None:intergenic 25.0%
! TGTTTAATGAGTATTTGGAT+TGG - chr4_3:8868446-8868465 Msa0628290:CDS 25.0%
! AAACGACTATTATTTAGAGA+CGG + chr4_3:8868612-8868631 None:intergenic 25.0%
! CTCTAAATAATAGTCGTTTA+AGG - chr4_3:8868613-8868632 Msa0628290:intron 25.0%
! CCCTTATTAATTGTAGTTAA+TGG - chr4_3:8868710-8868729 Msa0628290:intron 25.0%
!!! TTTGTGTGTTTTTTCAATGT+TGG - chr4_3:8868891-8868910 Msa0628290:intron 25.0%
!! TTTATATGTGTGTGTTTTTC+TGG - chr4_3:8869019-8869038 Msa0628290:intron 25.0%
! CCACTTTATAATTCAAACAT+TGG + chr4_3:8869188-8869207 None:intergenic 25.0%
! CCAATGTTTGAATTATAAAG+TGG - chr4_3:8869185-8869204 Msa0628290:intron 25.0%
! ATATGATATATCTAGAAACG+GGG - chr4_3:8869489-8869508 Msa0628290:intron 25.0%
!!! TTCAATTTTGGGATATTTGA+TGG + chr4_3:8869640-8869659 None:intergenic 25.0%
! CAAATATCCCAAAATTGAAA+AGG - chr4_3:8869641-8869660 Msa0628290:intron 25.0%
! AATATCCCAAAATTGAAAAG+GGG - chr4_3:8869643-8869662 Msa0628290:intron 25.0%
! TGAAAAAGGTAAATGATCTA+AGG - chr4_3:8869942-8869961 Msa0628290:CDS 25.0%
!!! GTGTGATTACTTTTACTTAT+AGG - chr4_3:8870255-8870274 Msa0628290:intron 25.0%
! ATTGTCAATAGGATGTTTAA+AGG + chr4_3:8870296-8870315 None:intergenic 25.0%
! CAAATCTTAAGGATCAATTA+AGG + chr4_3:8870330-8870349 None:intergenic 25.0%
!! AAATAATTTGCACAAATCCT+CGG - chr4_3:8870398-8870417 Msa0628290:intron 25.0%
! TAATCGCAAATTATATAGCT+GGG + chr4_3:8870461-8870480 None:intergenic 25.0%
! TTAATCGCAAATTATATAGC+TGG + chr4_3:8870462-8870481 None:intergenic 25.0%
! TTCTTTATTCTGTCATAACA+GGG - chr4_3:8870484-8870503 Msa0628290:intron 25.0%
! ATAAACATTTCAGCATTCAT+TGG - chr4_3:8870543-8870562 Msa0628290:intron 25.0%
! ATGTATGAATTGAAGTAGTA+AGG + chr4_3:8870656-8870675 None:intergenic 25.0%
!!! TTTGTTTGCTATTAATCCAA+TGG + chr4_3:8870796-8870815 None:intergenic 25.0%
! ACAAATCTATTATTCCTAAG+AGG - chr4_3:8870811-8870830 Msa0628290:CDS 25.0%
! CAAATCTATTATTCCTAAGA+GGG - chr4_3:8870812-8870831 Msa0628290:CDS 25.0%
!!! TTTTTTTTTTCCCTTTAAGG+GGG - chr4_3:8870838-8870857 Msa0628290:CDS 25.0%
!!! GGGTTTTACTTTTAAGAAAT+TGG - chr4_3:8870858-8870877 Msa0628290:CDS 25.0%
! ATTAAACTAACAACATTGTC+AGG - chr4_3:8870944-8870963 Msa0628290:intron 25.0%
! GAACCAATTATACTGATAAT+AGG - chr4_3:8870994-8871013 Msa0628290:intron 25.0%
! ACTCCTATTATCAGTATAAT+TGG + chr4_3:8871000-8871019 None:intergenic 25.0%
! AACATGTTACTATAGAATGT+TGG + chr4_3:8871159-8871178 None:intergenic 25.0%
! TTCAAATTGCAGTTACAAAT+TGG - chr4_3:8871363-8871382 Msa0628290:intron 25.0%
!!! ATTTTCTTGATTTTTCAGAC+TGG - chr4_3:8871498-8871517 Msa0628290:intron 25.0%
!! TTTACAATAGTTACTAGCTT+CGG + chr4_3:8871557-8871576 None:intergenic 25.0%
!! AACAAGTTCCTTTTCTAAAT+CGG - chr4_3:8871754-8871773 Msa0628290:intron 25.0%
! AATGTAAAGGAATTTCCATT+AGG + chr4_3:8871858-8871877 None:intergenic 25.0%
! AAAAAGCAAAGAATACAACA+AGG + chr4_3:8872066-8872085 None:intergenic 25.0%
!!! TGTTGTATTCTTTGCTTTTT+TGG - chr4_3:8872066-8872085 Msa0628290:intron 25.0%
! GTTTGTAGATCTTAAATTTG+AGG - chr4_3:8872098-8872117 Msa0628290:intron 25.0%
! TAAAAATGTCAAGACAAAGT+TGG - chr4_3:8872548-8872567 Msa0628290:intron 25.0%
!! TAATTGCGATGTAATTTTGA+TGG + chr4_3:8872643-8872662 None:intergenic 25.0%
! TTTCTGTAGTTGATCATTAA+TGG - chr4_3:8872846-8872865 Msa0628290:intron 25.0%
! TTAATGTTCAAATCTGGTAA+AGG - chr4_3:8872889-8872908 Msa0628290:intron 25.0%
! ATATGTTTATGCTTCATGAT+TGG - chr4_3:8873658-8873677 Msa0628290:five_prime_UTR 25.0%
! ATAAGTTGTTACTATTGTGA+AGG + chr4_3:8873724-8873743 None:intergenic 25.0%
ATATGTGTTCCTAAGAAAGT+GGG + chr4_3:8867830-8867849 None:intergenic 30.0%
AATATGTGTTCCTAAGAAAG+TGG + chr4_3:8867831-8867850 None:intergenic 30.0%
TGGTTAGAAAAAAATGGGAT+TGG + chr4_3:8867876-8867895 None:intergenic 30.0%
AAGGGTGGTTAGAAAAAAAT+GGG + chr4_3:8867881-8867900 None:intergenic 30.0%
AAAGGGTGGTTAGAAAAAAA+TGG + chr4_3:8867882-8867901 None:intergenic 30.0%
! CTTTAAGGGTTGTTGAAAAA+TGG + chr4_3:8867982-8868001 None:intergenic 30.0%
ACCCTTATAGATTTGGATTA+AGG - chr4_3:8868125-8868144 Msa0628290:CDS 30.0%
AAACGTAAACCACAACAAAA+GGG + chr4_3:8868224-8868243 None:intergenic 30.0%
AAAACGTAAACCACAACAAA+AGG + chr4_3:8868225-8868244 None:intergenic 30.0%
! AAAAGAAAGATGGGTTCTTA+TGG - chr4_3:8868329-8868348 Msa0628290:CDS 30.0%
TTATGGAAATCTTGCAAAGA+GGG - chr4_3:8868346-8868365 Msa0628290:CDS 30.0%
AGTTAATGGAGTAGTTAAGT+TGG - chr4_3:8868724-8868743 Msa0628290:intron 30.0%
AAGAGACAATTATTGTGAGA+CGG - chr4_3:8868847-8868866 Msa0628290:intron 30.0%
! AATTATAAACTAGCCTAGCT+TGG - chr4_3:8869056-8869075 Msa0628290:intron 30.0%
! TCCAATGTTGTTATTGTTGT+TGG - chr4_3:8869119-8869138 Msa0628290:intron 30.0%
ACCAACAACAATAACAACAT+TGG + chr4_3:8869123-8869142 None:intergenic 30.0%
!! TTTTGGCAAAAAGTACACTT+CGG - chr4_3:8869296-8869315 Msa0628290:CDS 30.0%
TGAGATTGAAGCCATAAAAT+GGG + chr4_3:8869446-8869465 None:intergenic 30.0%
TTGAGATTGAAGCCATAAAA+TGG + chr4_3:8869447-8869466 None:intergenic 30.0%
! AATCTCCCCTTTTCAATTTT+GGG + chr4_3:8869651-8869670 None:intergenic 30.0%
! AAATCTCCCCTTTTCAATTT+TGG + chr4_3:8869652-8869671 None:intergenic 30.0%
! TGCTGAAATTTTTCTTCTGT+AGG - chr4_3:8869799-8869818 Msa0628290:intron 30.0%
! GCTGAAATTTTTCTTCTGTA+GGG - chr4_3:8869800-8869819 Msa0628290:intron 30.0%
! CTGAAATTTTTCTTCTGTAG+GGG - chr4_3:8869801-8869820 Msa0628290:intron 30.0%
! TGAAATTTTTCTTCTGTAGG+GGG - chr4_3:8869802-8869821 Msa0628290:intron 30.0%
!! GTTGTTTTCATAAGCTATCT+TGG + chr4_3:8870092-8870111 None:intergenic 30.0%
TGCATAAACACTTAATGTGT+AGG + chr4_3:8870184-8870203 None:intergenic 30.0%
ATCACACTAACAAGAAACTA+GGG + chr4_3:8870242-8870261 None:intergenic 30.0%
AATCACACTAACAAGAAACT+AGG + chr4_3:8870243-8870262 None:intergenic 30.0%
AATCGCAAATTATATAGCTG+GGG + chr4_3:8870460-8870479 None:intergenic 30.0%
GTTCTTTATTCTGTCATAAC+AGG - chr4_3:8870483-8870502 Msa0628290:intron 30.0%
TATTAGTAATGCCAGTCATT+TGG + chr4_3:8870685-8870704 None:intergenic 30.0%
GGCATTACTAATATACTAGT+TGG - chr4_3:8870692-8870711 Msa0628290:intron 30.0%
AAAAGTAAAACCCCCTTAAA+GGG + chr4_3:8870851-8870870 None:intergenic 30.0%
TAAAAGTAAAACCCCCTTAA+AGG + chr4_3:8870852-8870871 None:intergenic 30.0%
! AAGAATTTCAGTTTTCACTG+TGG + chr4_3:8871042-8871061 None:intergenic 30.0%
ACAGTGAAAACTGAAATTCT+TGG - chr4_3:8871041-8871060 Msa0628290:intron 30.0%
! GATGGATTCGAAATACAAAA+TGG + chr4_3:8871101-8871120 None:intergenic 30.0%
TATCACAAGATGAAGTATGA+TGG + chr4_3:8871119-8871138 None:intergenic 30.0%
CTACAATATTGGATTCTCAT+TGG + chr4_3:8871336-8871355 None:intergenic 30.0%
AACTAATGGAGATGCATTAT+CGG + chr4_3:8871445-8871464 None:intergenic 30.0%
AAGAAATCAGACACAACTAA+TGG + chr4_3:8871459-8871478 None:intergenic 30.0%
! TTACAATAGTTACTAGCTTC+GGG + chr4_3:8871556-8871575 None:intergenic 30.0%
CCATAGAAAGAAAACTTGAA+TGG + chr4_3:8871656-8871675 None:intergenic 30.0%
!! CCATTCAAGTTTTCTTTCTA+TGG - chr4_3:8871653-8871672 Msa0628290:CDS 30.0%
TAAAGGAATTTCCATTAGGA+TGG + chr4_3:8871854-8871873 None:intergenic 30.0%
TTATTGTCCTATATGTATGC+AGG - chr4_3:8872126-8872145 Msa0628290:intron 30.0%
! TAAAGTACCTGCATACATAT+AGG + chr4_3:8872136-8872155 None:intergenic 30.0%
AATAATACCACAAATCCAAC+GGG + chr4_3:8872416-8872435 None:intergenic 30.0%
CAATAATACCACAAATCCAA+CGG + chr4_3:8872417-8872436 None:intergenic 30.0%
GGATTTGTGGTATTATTGAT+AGG - chr4_3:8872419-8872438 Msa0628290:intron 30.0%
! TTGATAGGAAAATTTGCTCT+AGG - chr4_3:8872434-8872453 Msa0628290:intron 30.0%
!!! GTGTCAAGTTAGTCATTTTT+TGG - chr4_3:8872507-8872526 Msa0628290:intron 30.0%
CTGTAGTTAATGTTCAAATC+TGG - chr4_3:8872883-8872902 Msa0628290:intron 30.0%
GAAATTATTGAAGCACAGAT+TGG + chr4_3:8873059-8873078 None:intergenic 30.0%
TAAGAACAGACAAATTGTCT+TGG - chr4_3:8873148-8873167 Msa0628290:exon 30.0%
TAAGAAAGGTTTGGAAGAAT+TGG - chr4_3:8873403-8873422 Msa0628290:five_prime_UTR 30.0%
GGTGCATTTGAATAAATGTT+AGG - chr4_3:8873526-8873545 Msa0628290:five_prime_UTR 30.0%
!!! TATTTTCAGCCTTGTTAAGT+TGG - chr4_3:8873552-8873571 Msa0628290:five_prime_UTR 30.0%
CAACTTATCAACTAAGTAGT+TGG - chr4_3:8873736-8873755 Msa0628290:five_prime_UTR 30.0%
CGTATCATATGTGTCAGTTT+CGG + chr4_3:8867603-8867622 None:intergenic 35.0%
CTCAAAACGATGATTCACTT+TGG + chr4_3:8867724-8867743 None:intergenic 35.0%
! CAAAGTGAATCATCGTTTTG+AGG - chr4_3:8867722-8867741 Msa0628290:three_prime_UTR 35.0%
TCACAAAAACCCACTTTCTT+AGG - chr4_3:8867818-8867837 Msa0628290:three_prime_UTR 35.0%
TTGAAGAAAAAGACAAAGGG+TGG + chr4_3:8867896-8867915 None:intergenic 35.0%
! TGTTTGAAGTGTGAATGCAT+GGG + chr4_3:8867942-8867961 None:intergenic 35.0%
! TTGTTTGAAGTGTGAATGCA+TGG + chr4_3:8867943-8867962 None:intergenic 35.0%
! AGGTATAGATTAATGGTGGA+TGG - chr4_3:8868145-8868164 Msa0628290:CDS 35.0%
!! GGTATAGATTAATGGTGGAT+GGG - chr4_3:8868146-8868165 Msa0628290:CDS 35.0%
AACGTAAACCACAACAAAAG+GGG + chr4_3:8868223-8868242 None:intergenic 35.0%
CTTCTTCAACAAGACTTCAT+TGG - chr4_3:8868245-8868264 Msa0628290:CDS 35.0%
CTTATGGAAATCTTGCAAAG+AGG - chr4_3:8868345-8868364 Msa0628290:CDS 35.0%
TGAGATGCCTATTATGGTTA+AGG - chr4_3:8868379-8868398 Msa0628290:CDS 35.0%
! GTTTTTGTGTTTTCAGATGC+AGG - chr4_3:8868490-8868509 Msa0628290:intron 35.0%
!! ACAAAACAAGCATTGGAAAC+AGG + chr4_3:8868581-8868600 None:intergenic 35.0%
GACTATTATTTAGAGACGGA+GGG + chr4_3:8868608-8868627 None:intergenic 35.0%
! ACTTTTTGCCAAAATCGCAA+TGG + chr4_3:8869290-8869309 None:intergenic 35.0%
! TCGGAGCATCAAAAAGATTA+CGG - chr4_3:8869315-8869334 Msa0628290:CDS 35.0%
AGCATCAAAAAGATTACGGA+CGG - chr4_3:8869319-8869338 Msa0628290:CDS 35.0%
TGATGAGTTTGGCAAAATCA+CGG + chr4_3:8869350-8869369 None:intergenic 35.0%
! TGATTTTGCCAAACTCATCA+CGG - chr4_3:8869350-8869369 Msa0628290:intron 35.0%
!! AAGAGTTTTTGAGAGAAGCT+TGG - chr4_3:8869378-8869397 Msa0628290:intron 35.0%
! TTTCAGATTTTCATCGTACG+TGG - chr4_3:8869407-8869426 Msa0628290:intron 35.0%
! TTCAGATTTTCATCGTACGT+GGG - chr4_3:8869408-8869427 Msa0628290:intron 35.0%
CCATAAAATGGGATTCAAAC+AGG + chr4_3:8869435-8869454 None:intergenic 35.0%
! CCTGTTTGAATCCCATTTTA+TGG - chr4_3:8869432-8869451 Msa0628290:intron 35.0%
GGCAAACATTTCATGTAGTA+AGG + chr4_3:8869619-8869638 None:intergenic 35.0%
TTACCGTAACGACTAATAGA+AGG + chr4_3:8869887-8869906 None:intergenic 35.0%
TTGAGCGAACACAAATCTTA+AGG + chr4_3:8870341-8870360 None:intergenic 35.0%
ATCGCAAATTATATAGCTGG+GGG + chr4_3:8870459-8870478 None:intergenic 35.0%
TTTCTAAATATCTGCAGTGC+AGG - chr4_3:8870571-8870590 Msa0628290:intron 35.0%
AGTTCTTACTCTATGTGATG+CGG - chr4_3:8870607-8870626 Msa0628290:intron 35.0%
ACTAATATACTAGTTGGTCC+CGG - chr4_3:8870698-8870717 Msa0628290:intron 35.0%
AGAAACTTCTTTACGACCAT+TGG - chr4_3:8870777-8870796 Msa0628290:CDS 35.0%
!! TCTTGATTTTTCAGACTGGT+TGG - chr4_3:8871502-8871521 Msa0628290:intron 35.0%
!! CTGGTTGGAAAAAGTGTTAT+CGG - chr4_3:8871517-8871536 Msa0628290:intron 35.0%
GTAAGTCTTTACCATCCTAA+TGG - chr4_3:8871840-8871859 Msa0628290:intron 35.0%
AAGGACTATGCAACATAACA+AGG + chr4_3:8871926-8871945 None:intergenic 35.0%
! TGATTTGAAACACACTTGTG+TGG - chr4_3:8872163-8872182 Msa0628290:intron 35.0%
! TTCTCTTTCTCGAAAGCATA+TGG - chr4_3:8872209-8872228 Msa0628290:intron 35.0%
! TCGAAAGCATATGGAATGAT+GGG - chr4_3:8872218-8872237 Msa0628290:intron 35.0%
CATTCGATAGTTGTATAGCA+TGG + chr4_3:8872370-8872389 None:intergenic 35.0%
! GAATGGTCGAGTAAGATTTT+TGG + chr4_3:8872596-8872615 None:intergenic 35.0%
TCTTACTCGACCATTCAAAA+AGG - chr4_3:8872600-8872619 Msa0628290:intron 35.0%
TTGTCAACTTGGGTCTATAT+TGG - chr4_3:8872805-8872824 Msa0628290:intron 35.0%
! AGCAAGAGTTTTTACTCGTT+CGG + chr4_3:8873129-8873148 None:intergenic 35.0%
AGAAGGAGCTATATACCTTT+GGG - chr4_3:8873211-8873230 Msa0628290:five_prime_UTR 35.0%
GGAAATCTTAGAATCTCGTT+TGG - chr4_3:8873338-8873357 Msa0628290:five_prime_UTR 35.0%
AATCTTAGAATCTCGTTTGG+AGG - chr4_3:8873341-8873360 Msa0628290:five_prime_UTR 35.0%
AGAAAGGCTTAAGAAAGGTT+TGG - chr4_3:8873394-8873413 Msa0628290:five_prime_UTR 35.0%
! AAATTTTCTCCACTGGCAAA+TGG + chr4_3:8873500-8873519 None:intergenic 35.0%
!!! AGTGAATCATCGTTTTGAGG+TGG - chr4_3:8867725-8867744 Msa0628290:three_prime_UTR 40.0%
TGCGTTAAAGAAACGCATAG+AGG - chr4_3:8868024-8868043 Msa0628290:three_prime_UTR 40.0%
!! TAGATTAATGGTGGATGGGT+TGG - chr4_3:8868150-8868169 Msa0628290:CDS 40.0%
GGAAACTGAGATGCCTATTA+TGG - chr4_3:8868373-8868392 Msa0628290:CDS 40.0%
!! GAGTATTTGGATTGGTGATC+TGG - chr4_3:8868454-8868473 Msa0628290:CDS 40.0%
! GATTGGTGATCTGGAATTTG+AGG - chr4_3:8868463-8868482 Msa0628290:CDS 40.0%
AGCTAAGAATGCTGTGTCTT+TGG - chr4_3:8868526-8868545 Msa0628290:intron 40.0%
GGGAGTAACAAAACAAGCAT+TGG + chr4_3:8868588-8868607 None:intergenic 40.0%
CGACTATTATTTAGAGACGG+AGG + chr4_3:8868609-8868628 None:intergenic 40.0%
AGACAATTATTGTGAGACGG+AGG - chr4_3:8868850-8868869 Msa0628290:intron 40.0%
GACAATTATTGTGAGACGGA+GGG - chr4_3:8868851-8868870 Msa0628290:intron 40.0%
CTGTTGTTGTGTGTGATTTC+TGG - chr4_3:8869094-8869113 Msa0628290:intron 40.0%
! GTGTGTGTGTGTGTGTTTTA+TGG - chr4_3:8869159-8869178 Msa0628290:intron 40.0%
TGTGTTAGTAAGCGCATGTT+TGG - chr4_3:8869232-8869251 Msa0628290:intron 40.0%
! TAAGCGCATGTTTGGAATAG+TGG - chr4_3:8869240-8869259 Msa0628290:intron 40.0%
! GTTTGGAATAGTGGTGAGAT+TGG - chr4_3:8869249-8869268 Msa0628290:CDS 40.0%
CTTTGTATCCGTGATGAGTT+TGG + chr4_3:8869361-8869380 None:intergenic 40.0%
! GCTCTCTTTTTGATGAGAAC+TGG - chr4_3:8869522-8869541 Msa0628290:intron 40.0%
! AATTTTTCTTCTGTAGGGGG+TGG - chr4_3:8869805-8869824 Msa0628290:intron 40.0%
TTATCCAATGCTTGCTTTGG+AGG + chr4_3:8869842-8869861 None:intergenic 40.0%
!! TCCAAAGCAAGCATTGGATA+AGG - chr4_3:8869841-8869860 Msa0628290:intron 40.0%
ACCTTATCCAATGCTTGCTT+TGG + chr4_3:8869845-8869864 None:intergenic 40.0%
GAGCCTTCTATTAGTCGTTA+CGG - chr4_3:8869881-8869900 Msa0628290:CDS 40.0%
! ACTTATAGGGAAGTACGACT+TGG - chr4_3:8870269-8870288 Msa0628290:intron 40.0%
! CTTATAGGGAAGTACGACTT+GGG - chr4_3:8870270-8870289 Msa0628290:intron 40.0%
TTTGCACAAATCCTCGGTTA+TGG - chr4_3:8870404-8870423 Msa0628290:intron 40.0%
GTTCTTACTCTATGTGATGC+GGG - chr4_3:8870608-8870627 Msa0628290:intron 40.0%
TTCTTACTCTATGTGATGCG+GGG - chr4_3:8870609-8870628 Msa0628290:intron 40.0%
! GTAAGGAGCATACATAACCA+CGG + chr4_3:8870639-8870658 None:intergenic 40.0%
TACATGTCCTTCCAAATGAC+TGG - chr4_3:8870671-8870690 Msa0628290:intron 40.0%
AGTAATGCCAGTCATTTGGA+AGG + chr4_3:8870681-8870700 None:intergenic 40.0%
! ATAAAGTGTTTCCGGGTTAC+CGG + chr4_3:8870720-8870739 None:intergenic 40.0%
! CATCTGGATAAAGTGTTTCC+GGG + chr4_3:8870727-8870746 None:intergenic 40.0%
! GCATCTGGATAAAGTGTTTC+CGG + chr4_3:8870728-8870747 None:intergenic 40.0%
GAAACACTTTATCCAGATGC+AGG - chr4_3:8870728-8870747 Msa0628290:intron 40.0%
! TTTCAGTTTTCACTGTGGCA+AGG + chr4_3:8871037-8871056 None:intergenic 40.0%
AGTGTGTAGTAGACGAGAAA+AGG - chr4_3:8871266-8871285 Msa0628290:intron 40.0%
GTGTGTAGTAGACGAGAAAA+GGG - chr4_3:8871267-8871286 Msa0628290:intron 40.0%
TGTGTAGTAGACGAGAAAAG+GGG - chr4_3:8871268-8871287 Msa0628290:intron 40.0%
!! TAGAAGAGACTCTGGAATGT+AGG + chr4_3:8871600-8871619 None:intergenic 40.0%
CATTCCAGAGTCTCTTCTAA+AGG - chr4_3:8871601-8871620 Msa0628290:intron 40.0%
! ATGGGTTGCATTCATGAATG+AGG - chr4_3:8871971-8871990 Msa0628290:intron 40.0%
! CACAGTTGATTGCTCACTTT+TGG - chr4_3:8872032-8872051 Msa0628290:intron 40.0%
TTGAAACACACTTGTGTGGA+AGG - chr4_3:8872167-8872186 Msa0628290:intron 40.0%
! CTCGAAAGCATATGGAATGA+TGG - chr4_3:8872217-8872236 Msa0628290:intron 40.0%
! AAGCATATGGAATGATGGGA+TGG - chr4_3:8872222-8872241 Msa0628290:intron 40.0%
!! TGGTCGAGTAAGATTTTTGG+TGG + chr4_3:8872593-8872612 None:intergenic 40.0%
! TAGACCCAAGTTGACAAACA+TGG + chr4_3:8872802-8872821 None:intergenic 40.0%
!! CATACCCTTCTGAAGTAGAA+GGG - chr4_3:8872997-8873016 Msa0628290:intron 40.0%
! GTCTTGGACTTTGAGAAGTT+GGG + chr4_3:8873030-8873049 None:intergenic 40.0%
! TGTCTTGGACTTTGAGAAGT+TGG + chr4_3:8873031-8873050 None:intergenic 40.0%
CACAGATTGGAATGTTGTCT+TGG + chr4_3:8873046-8873065 None:intergenic 40.0%
! ATTCTAAGGAGTAGAGTGCA+AGG + chr4_3:8873088-8873107 None:intergenic 40.0%
TGCACTCTACTCCTTAGAAT+TGG - chr4_3:8873088-8873107 Msa0628290:intron 40.0%
GCACTCTACTCCTTAGAATT+GGG - chr4_3:8873089-8873108 Msa0628290:intron 40.0%
CTTAGAATTGGGACCTGAAT+GGG - chr4_3:8873100-8873119 Msa0628290:intron 40.0%
GAACAGACAAATTGTCTTGG+AGG - chr4_3:8873151-8873170 Msa0628290:exon 40.0%
CTCGGAGAAGGTTCTATTAA+AGG - chr4_3:8873185-8873204 Msa0628290:five_prime_UTR 40.0%
GGAGAAGGTTCTATTAAAGG+AGG - chr4_3:8873188-8873207 Msa0628290:five_prime_UTR 40.0%
GGTTCTATTAAAGGAGGAGA+AGG - chr4_3:8873194-8873213 Msa0628290:five_prime_UTR 40.0%
GAGAAGGAGCTATATACCTT+TGG - chr4_3:8873210-8873229 Msa0628290:five_prime_UTR 40.0%
ATGATTTCGAAGTTGTTCGC+TGG - chr4_3:8873261-8873280 Msa0628290:five_prime_UTR 40.0%
TTGGAAGAATTGGTTGCACA+TGG - chr4_3:8873413-8873432 Msa0628290:five_prime_UTR 40.0%
AGAATTGGTTGCACATGGTT+TGG - chr4_3:8873418-8873437 Msa0628290:five_prime_UTR 40.0%
AAGAAAAGTCCATTTGCCAG+TGG - chr4_3:8873488-8873507 Msa0628290:five_prime_UTR 40.0%
!! TTTCAGCCTTGTTAAGTTGG+AGG - chr4_3:8873555-8873574 Msa0628290:five_prime_UTR 40.0%
!! TTCAGCCTTGTTAAGTTGGA+GGG - chr4_3:8873556-8873575 Msa0628290:five_prime_UTR 40.0%
TAGTACCCTCCAACTTAACA+AGG + chr4_3:8873564-8873583 None:intergenic 40.0%
!! TAAGTTGGAGGGTACTAACA+AGG - chr4_3:8873567-8873586 Msa0628290:five_prime_UTR 40.0%
!! TGATCACACTCTTTAGAGCA+TGG - chr4_3:8873789-8873808 Msa0628290:five_prime_UTR 40.0%
GACATACACATTGGAGAGTT+TGG + chr4_3:8873852-8873871 None:intergenic 40.0%
ACACAGTTGGACATACACAT+TGG + chr4_3:8873861-8873880 None:intergenic 40.0%
GGATGTCGACGTGTCTATAT+CGG - chr4_3:8867663-8867682 Msa0628290:three_prime_UTR 45.0%
AAATCTTGCAAAGAGGGCTG+TGG - chr4_3:8868352-8868371 Msa0628290:CDS 45.0%
! AGTCGTTTAAGGTTTGTGCG+CGG - chr4_3:8868624-8868643 Msa0628290:intron 45.0%
AGGTTTGTGCGCGGTTATTA+AGG - chr4_3:8868633-8868652 Msa0628290:intron 45.0%
ACAGCAACAATAGCCAAGCT+AGG + chr4_3:8869072-8869091 None:intergenic 45.0%
TGGAATAGTGGTGAGATTGG+AGG - chr4_3:8869252-8869271 Msa0628290:CDS 45.0%
TGAGTTTGGCAAAATCACGG+CGG + chr4_3:8869347-8869366 None:intergenic 45.0%
TTCTGTAGGGGGTGGTTTAT+TGG - chr4_3:8869813-8869832 Msa0628290:intron 45.0%
AGTCGTTACGGTAACGATGA+AGG - chr4_3:8869893-8869912 Msa0628290:CDS 45.0%
!! CAGAGCAGCATTGGTGAAAA+AGG - chr4_3:8869928-8869947 Msa0628290:CDS 45.0%
CAAGAAACTAGGGCTCTGTT+TGG + chr4_3:8870232-8870251 None:intergenic 45.0%
ATTGATCACCTGATTGGCAC+CGG + chr4_3:8870436-8870455 None:intergenic 45.0%
TCTTACTCTATGTGATGCGG+GGG - chr4_3:8870610-8870629 Msa0628290:intron 45.0%
! TAAAGTGTTTCCGGGTTACC+GGG + chr4_3:8870719-8870738 None:intergenic 45.0%
GCAATGACTTTACCTGCATC+TGG + chr4_3:8870743-8870762 None:intergenic 45.0%
! ATAGTTACTAGCTTCGGGAC+AGG + chr4_3:8871551-8871570 None:intergenic 45.0%
! TCTGGAATGTAGGTTCCAGT+TGG + chr4_3:8871590-8871609 None:intergenic 45.0%
! GAGACCTTTAGAAGAGACTC+TGG + chr4_3:8871608-8871627 None:intergenic 45.0%
! TCCTTTTCTAAATCGGCCAG+AGG - chr4_3:8871761-8871780 Msa0628290:intron 45.0%
! TCCTCTGGCCGATTTAGAAA+AGG + chr4_3:8871765-8871784 None:intergenic 45.0%
CACACAGATTTGCAATCCTC+TGG + chr4_3:8871780-8871799 None:intergenic 45.0%
GCAAATCTGTGTGAGAAAGC+TGG - chr4_3:8871787-8871806 Msa0628290:intron 45.0%
AGCCTCCATGTTTGTCAACT+TGG - chr4_3:8872794-8872813 Msa0628290:intron 45.0%
GCCTCCATGTTTGTCAACTT+GGG - chr4_3:8872795-8872814 Msa0628290:intron 45.0%
! ACCCAAGTTGACAAACATGG+AGG + chr4_3:8872799-8872818 None:intergenic 45.0%
!! GCATACCCTTCTGAAGTAGA+AGG - chr4_3:8872996-8873015 Msa0628290:intron 45.0%
CAAGCCCTTCTACTTCAGAA+GGG + chr4_3:8873004-8873023 None:intergenic 45.0%
CCATTCAGGTCCCAATTCTA+AGG + chr4_3:8873102-8873121 None:intergenic 45.0%
CCTTAGAATTGGGACCTGAA+TGG - chr4_3:8873099-8873118 Msa0628290:intron 45.0%
ACCTTCTCCGAGAGAAGAAA+GGG + chr4_3:8873177-8873196 None:intergenic 45.0%
AACCTTCTCCGAGAGAAGAA+AGG + chr4_3:8873178-8873197 None:intergenic 45.0%
CTTTGGGTGAAGATTCCAAG+CGG - chr4_3:8873227-8873246 Msa0628290:five_prime_UTR 45.0%
! TTGTTCGCTGGCTAGCTAAT+AGG - chr4_3:8873273-8873292 Msa0628290:five_prime_UTR 45.0%
ATTGTAGAGCAGCAGCAGAA+AGG - chr4_3:8873378-8873397 Msa0628290:five_prime_UTR 45.0%
GCAGCAGAAAGGCTTAAGAA+AGG - chr4_3:8873389-8873408 Msa0628290:five_prime_UTR 45.0%
! CAGCTGCAAATTTTCTCCAC+TGG + chr4_3:8873507-8873526 None:intergenic 45.0%
CAGTGGAGAAAATTTGCAGC+TGG - chr4_3:8873505-8873524 Msa0628290:five_prime_UTR 45.0%
TTGTGTGTCGTGTGTGTGTC+TGG + chr4_3:8867786-8867805 None:intergenic 50.0%
! TAGGGTCACCCCTTTTGTTG+TGG - chr4_3:8868212-8868231 Msa0628290:CDS 50.0%
CAGATGCAGGAATTGCTACG+AGG - chr4_3:8868503-8868522 Msa0628290:intron 50.0%
! GAATGCTGTGTCTTTGGCTC+AGG - chr4_3:8868532-8868551 Msa0628290:intron 50.0%
! ACGACGAGCCATTGCGATTT+TGG - chr4_3:8869279-8869298 Msa0628290:CDS 50.0%
CTCAATGCAAGCGACATGAG+TGG - chr4_3:8869462-8869481 Msa0628290:intron 50.0%
AACTGGATCCTCTTGCAGTC+AGG - chr4_3:8869539-8869558 Msa0628290:intron 50.0%
ACTGGATCCTCTTGCAGTCA+GGG - chr4_3:8869540-8869559 Msa0628290:intron 50.0%
GCAACCTCCAAAGCAAGCAT+TGG - chr4_3:8869835-8869854 Msa0628290:intron 50.0%
TCCTGAACTCAGAGCAGCAT+TGG - chr4_3:8869919-8869938 Msa0628290:CDS 50.0%
! ACCAATGCTGCTCTGAGTTC+AGG + chr4_3:8869923-8869942 None:intergenic 50.0%
TCCTCGGTTATGGTTACAGC+CGG - chr4_3:8870414-8870433 Msa0628290:intron 50.0%
TGGGGGATTGATCACCTGAT+TGG + chr4_3:8870442-8870461 None:intergenic 50.0%
TAGGTTCCAGTTGGATTGCC+AGG + chr4_3:8871581-8871600 None:intergenic 50.0%
! TGTGTGAGAAAGCTGGCTCT+TGG - chr4_3:8871794-8871813 Msa0628290:intron 50.0%
! GGAATGATGGGATGGCGAAT+TGG - chr4_3:8872230-8872249 Msa0628290:intron 50.0%
AACATGCAGTGATGTCCCGT+TGG - chr4_3:8872398-8872417 Msa0628290:intron 50.0%
GTGATGTCCCGTTGGATTTG+TGG - chr4_3:8872406-8872425 Msa0628290:intron 50.0%
!! GGGTCTATATTGGTGCTGAG+CGG - chr4_3:8872815-8872834 Msa0628290:intron 50.0%
CCAAGCCCTTCTACTTCAGA+AGG + chr4_3:8873005-8873024 None:intergenic 50.0%
!! CCTTCTGAAGTAGAAGGGCT+TGG - chr4_3:8873002-8873021 Msa0628290:intron 50.0%
ACTCGTTCGGTAACCCATTC+AGG + chr4_3:8873116-8873135 None:intergenic 50.0%
TTGGAGGCCCTTTCTTCTCT+CGG - chr4_3:8873167-8873186 Msa0628290:five_prime_UTR 50.0%
CGCTTGGAATCTTCACCCAA+AGG + chr4_3:8873229-8873248 None:intergenic 50.0%
GTGAAGATTCCAAGCGGACA+TGG - chr4_3:8873233-8873252 Msa0628290:five_prime_UTR 50.0%
TCATCGTAACCATGTCCGCT+TGG + chr4_3:8873245-8873264 None:intergenic 50.0%
!! GTGGATGGGTTGGTGAAGAG+TGG - chr4_3:8868160-8868179 Msa0628290:CDS 55.0%
CTGGATCCTCTTGCAGTCAG+GGG - chr4_3:8869541-8869560 Msa0628290:intron 55.0%
TGTGATCCCCTGACTGCAAG+AGG + chr4_3:8869550-8869569 None:intergenic 55.0%
ACCGGCTGTAACCATAACCG+AGG + chr4_3:8870418-8870437 None:intergenic 55.0%
ACTAGTTGGTCCCGGTAACC+CGG - chr4_3:8870706-8870725 Msa0628290:intron 55.0%
!! AGCTGGCTCTTGGCTTGTTG+TGG - chr4_3:8871804-8871823 Msa0628290:intron 55.0%
GCCCTTTCTTCTCTCGGAGA+AGG - chr4_3:8873173-8873192 Msa0628290:five_prime_UTR 55.0%
! CGCTGGCTAGCTAATAGGCA+CGG - chr4_3:8873278-8873297 Msa0628290:five_prime_UTR 55.0%
! GCTGGCTAGCTAATAGGCAC+GGG - chr4_3:8873279-8873298 Msa0628290:five_prime_UTR 55.0%
! CACGGGATTGCTGTTATCCC+TGG - chr4_3:8873296-8873315 Msa0628290:five_prime_UTR 55.0%
! GTTATCCCTGGAAGTGCGTG+CGG - chr4_3:8873308-8873327 Msa0628290:five_prime_UTR 55.0%
GCACGACGACACAACACAGT+TGG + chr4_3:8873874-8873893 None:intergenic 55.0%
! GGTTACAGCCGGTGCCAATC+AGG - chr4_3:8870425-8870444 Msa0628290:intron 60.0%
ATGTGATGCGGGGGATTCCG+TGG - chr4_3:8870619-8870638 Msa0628290:intron 60.0%
CAGCACCGCACGCACTTCCA+GGG + chr4_3:8873316-8873335 None:intergenic 65.0%
GCAGCACCGCACGCACTTCC+AGG + chr4_3:8873317-8873336 None:intergenic 70.0%
!! GGAAGTGCGTGCGGTGCTGC+TGG - chr4_3:8873317-8873336 Msa0628290:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 8867578 8873923 8867578 ID=Msa0628290;Name=Msa0628290
chr4_3 mRNA 8867578 8873923 8867578 ID=Msa0628290-mRNA-1;Parent=Msa0628290;Name=Msa0628290-mRNA-1;_AED=0.07;_eAED=0.07;_QI=760|0.62|0.66|1|0.75|0.88|9|472|357
chr4_3 exon 8867578 8868508 8867578 ID=Msa0628290-mRNA-1:exon:2600;Parent=Msa0628290-mRNA-1
chr4_3 exon 8869245 8869353 8869245 ID=Msa0628290-mRNA-1:exon:2599;Parent=Msa0628290-mRNA-1
chr4_3 exon 8869662 8869720 8869662 ID=Msa0628290-mRNA-1:exon:2598;Parent=Msa0628290-mRNA-1
chr4_3 exon 8869879 8869970 8869879 ID=Msa0628290-mRNA-1:exon:2597;Parent=Msa0628290-mRNA-1
chr4_3 exon 8870752 8870908 8870752 ID=Msa0628290-mRNA-1:exon:2596;Parent=Msa0628290-mRNA-1
chr4_3 exon 8871055 8871114 8871055 ID=Msa0628290-mRNA-1:exon:2595;Parent=Msa0628290-mRNA-1
chr4_3 exon 8871639 8871680 8871639 ID=Msa0628290-mRNA-1:exon:2594;Parent=Msa0628290-mRNA-1
chr4_3 exon 8872963 8872995 8872963 ID=Msa0628290-mRNA-1:exon:2593;Parent=Msa0628290-mRNA-1
chr4_3 exon 8873101 8873923 8873101 ID=Msa0628290-mRNA-1:exon:2592;Parent=Msa0628290-mRNA-1
chr4_3 five_prime_UTR 8873164 8873923 8873164 ID=Msa0628290-mRNA-1:five_prime_utr;Parent=Msa0628290-mRNA-1
chr4_3 CDS 8873101 8873163 8873101 ID=Msa0628290-mRNA-1:cds;Parent=Msa0628290-mRNA-1
chr4_3 CDS 8872963 8872995 8872963 ID=Msa0628290-mRNA-1:cds;Parent=Msa0628290-mRNA-1
chr4_3 CDS 8871639 8871680 8871639 ID=Msa0628290-mRNA-1:cds;Parent=Msa0628290-mRNA-1
chr4_3 CDS 8871055 8871114 8871055 ID=Msa0628290-mRNA-1:cds;Parent=Msa0628290-mRNA-1
chr4_3 CDS 8870752 8870908 8870752 ID=Msa0628290-mRNA-1:cds;Parent=Msa0628290-mRNA-1
chr4_3 CDS 8869879 8869970 8869879 ID=Msa0628290-mRNA-1:cds;Parent=Msa0628290-mRNA-1
chr4_3 CDS 8869662 8869720 8869662 ID=Msa0628290-mRNA-1:cds;Parent=Msa0628290-mRNA-1
chr4_3 CDS 8869245 8869353 8869245 ID=Msa0628290-mRNA-1:cds;Parent=Msa0628290-mRNA-1
chr4_3 CDS 8868050 8868508 8868050 ID=Msa0628290-mRNA-1:cds;Parent=Msa0628290-mRNA-1
chr4_3 three_prime_UTR 8867578 8868049 8867578 ID=Msa0628290-mRNA-1:three_prime_utr;Parent=Msa0628290-mRNA-1
Gene Sequence

>Msa0628290

ATGGGTTCTTATGGAAATCTTGCAAAGAGGGCTGTGGAAACTGAGATGCCTATTATGGTTAAGATGCAGGAATTGCTACGAGGAGCTAAGAATGCTGGGGTGGTTTATTGGCAACCTCCAAAGCAAGCATTGGATAAGCTGCGTAATGAAAATAATTTGCACAAATCCTCGGTTATGGTTACAGCCGGTGCCAATCAGGCGTTCGTGAATCTAGTTCTTACTCTATGTGATGCGGGGGATTCCGTGGTTATGTATGCTCCTTACTACTTCAATTCATACATGTCCTTCCAAATGACTGGCATTACTAATATACTAGTTGGTCCCGGTAACCCGGAAACACTTTATCCAGATGCAGTGTTATCGGAAAGTAAACCTGTCCCGAAGCTAGTAACTATTGTAAATCCTGGCAATCCAACTGGAACCTACATTCCAGAGTCTCTTCTAAAGAGGATTGCAAATCTGTGTGAGAAAGCTGGCTCTTGGCTTGTTGTGGACAATACATATGAGTACTTTATGTTTGATGATTTGAAACACACTTGTGTGGAAGGAAATCATGTTGTGAATATTTTCTCTTTCTCGAAAGCATATGGAATGATGGGATGGCGAATTGGATACATAGCATACCCTTCTGAAGTAGAAGGGCTTGGTTCCCAACTTCTCAAAGTCCAAGACAACATTCCAATCTGTGCTTCAATAATTTCACAACACCTTGCACTCTACTCCTTAGAATTGGGACCTGAATGGGTTACCGAACGAGTAAAAACTCTTGCTAAGAACAGACAAATTGTCTTGGAGGCCCTTTCTTCTCTCGGAGAAGGTTCTATTAAAGGAGGAGAAGGAGCTATATACCTTTGGGTGAAGATTCCAAGCGGACATGGTTACGATGATTTCGAAGTTGTTCGCTGGCTAGCTAATAGGCACGGGATTGCTGTTATCCCTGGAAGTGCGTGCGGTGCTGCTGGAAATCTTAGAATCTCGTTTGGAGGTTTGACTGAAAATGATTGTAGAGCAGCAGCAGAAAGGCTTAAGAAAGGTTTGGAAGAATTGGTTGCACATGGTTTGGTACAAGACTAG

Protein sequence

>Msa0628290

MGSYGNLAKRAVETEMPIMVKMQELLRGAKNAGVVYWQPPKQALDKLRNENNLHKSSVMVTAGANQAFVNLVLTLCDAGDSVVMYAPYYFNSYMSFQMTGITNILVGPGNPETLYPDAVLSESKPVPKLVTIVNPGNPTGTYIPESLLKRIANLCEKAGSWLVVDNTYEYFMFDDLKHTCVEGNHVVNIFSFSKAYGMMGWRIGYIAYPSEVEGLGSQLLKVQDNIPICASIISQHLALYSLELGPEWVTERVKTLAKNRQIVLEALSSLGEGSIKGGEGAIYLWVKIPSGHGYDDFEVVRWLANRHGIAVIPGSACGAAGNLRISFGGLTENDCRAAAERLKKGLEELVAHGLVQD*