Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972470 | AFK34146.1 | 98.722 | 313 | 4 | 0 | 49 | 361 | 28 | 340 | 0.0 | 653 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972470 | sp|Q9LYK6|APRF1_ARATH | 83.793 | 290 | 47 | 0 | 49 | 338 | 26 | 315 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972470 | I3S1K4 | 98.722 | 313 | 4 | 0 | 49 | 361 | 28 | 340 | 0.0 | 653 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0660870 | Msa0972470 | -0.808336 | 3.256426e-50 | -8.615850e-47 |
| Msa0724530 | Msa0972470 | 0.810356 | 1.200592e-50 | -8.615850e-47 |
| Msa0799280 | Msa0972470 | -0.805900 | 1.067682e-49 | -8.615850e-47 |
| Msa0935570 | Msa0972470 | 0.863331 | 2.686286e-64 | -8.615850e-47 |
| Msa0972470 | Msa1008340 | -0.805760 | 1.142516e-49 | -8.615850e-47 |
| Msa0972470 | Msa1165700 | 0.805406 | 1.355433e-49 | -8.615850e-47 |
| Msa0972470 | Msa1209560 | -0.818709 | 1.701296e-52 | -8.615850e-47 |
| Msa0972470 | Msa1246040 | -0.815188 | 1.050637e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972470 | MtrunA17_Chr6g0451371 | 98.722 | 313 | 4 | 0 | 49 | 361 | 28 | 340 | 0.0 | 653 |
| Msa0972470 | MtrunA17_Chr8g0367211 | 50.171 | 293 | 137 | 5 | 49 | 337 | 36 | 323 | 1.61e-101 | 303 |
| Msa0972470 | MtrunA17_Chr1g0185501 | 21.942 | 278 | 205 | 5 | 53 | 327 | 33 | 301 | 7.88e-17 | 80.5 |
| Msa0972470 | MtrunA17_Chr4g0067151 | 21.233 | 292 | 207 | 6 | 50 | 328 | 30 | 311 | 3.12e-14 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972470 | AT5G14530.1 | 83.793 | 290 | 47 | 0 | 49 | 338 | 26 | 315 | 0.0 | 520 |
| Msa0972470 | AT5G66240.1 | 49.655 | 290 | 141 | 3 | 49 | 337 | 32 | 317 | 6.77e-97 | 291 |
| Msa0972470 | AT5G66240.2 | 49.655 | 290 | 141 | 3 | 49 | 337 | 35 | 320 | 7.29e-97 | 291 |
| Msa0972470 | AT5G66240.3 | 49.310 | 290 | 140 | 4 | 49 | 337 | 32 | 315 | 7.46e-94 | 283 |
| Msa0972470 | AT5G50230.1 | 25.091 | 275 | 184 | 10 | 52 | 318 | 230 | 490 | 3.71e-14 | 73.9 |
| Msa0972470 | AT4G02730.1 | 21.533 | 274 | 194 | 7 | 32 | 296 | 26 | 287 | 7.82e-14 | 72.0 |
| Msa0972470 | AT3G49660.1 | 20.209 | 287 | 212 | 6 | 50 | 328 | 27 | 304 | 4.38e-12 | 66.6 |
Find 107 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAACTGTTCTCACATTT+TGG | 0.113826 | 6_4:-4775617 | Msa0972470:CDS |
| CACCGTCCCTGCTCAATTTC+AGG | 0.186376 | 6_4:-4778587 | Msa0972470:intron |
| CCATCGTAAGGATGATTTAT+TGG | 0.221583 | 6_4:-4776432 | Msa0972470:CDS |
| ATGCTCTTCAAGGTACAATT+TGG | 0.267475 | 6_4:-4776282 | Msa0972470:CDS |
| TGGGTCGGTTCACTGGGGTT+GGG | 0.270302 | 6_4:+4775524 | None:intergenic |
| GGGACGGTGGTAGTGGGTGG+TGG | 0.285165 | 6_4:+4778601 | None:intergenic |
| TTTGTTGTGCGATTGATTAT+TGG | 0.296210 | 6_4:+4778706 | None:intergenic |
| GGGTCGGTTCACTGGGGTTG+GGG | 0.328947 | 6_4:+4775525 | None:intergenic |
| GTGTGCCTTCATGCTTGAAA+TGG | 0.333505 | 6_4:-4775668 | Msa0972470:CDS |
| TAAGCGCTGCGGATTTAGTT+TGG | 0.334470 | 6_4:-4775829 | Msa0972470:CDS |
| TTGTTGTGCGATTGATTATT+GGG | 0.337462 | 6_4:+4778707 | None:intergenic |
| TTGGGTCGGTTCACTGGGGT+TGG | 0.342028 | 6_4:+4775523 | None:intergenic |
| TTCAGATTCGGTTCGTTGTT+TGG | 0.346342 | 6_4:+4775591 | None:intergenic |
| TGGTAGTGGGTGGTGGGCGG+TGG | 0.352318 | 6_4:+4778608 | None:intergenic |
| GCCACTACATACTTCCCGTC+TGG | 0.359890 | 6_4:+4775768 | None:intergenic |
| TTGACCACAGTGTAAGGTTA+TGG | 0.367297 | 6_4:-4776127 | Msa0972470:CDS |
| ACCATGTTTCTTATGATAAG+TGG | 0.368405 | 6_4:+4776346 | None:intergenic |
| GTGGGTGGTGGGCGGTGGAC+GGG | 0.373821 | 6_4:+4778613 | None:intergenic |
| TATTCTTCAGCTTTCAGATT+CGG | 0.379412 | 6_4:+4775579 | None:intergenic |
| AGCATGAAGGCACACCAATA+TGG | 0.401017 | 6_4:+4775676 | None:intergenic |
| AGTGGGTGGTGGGCGGTGGA+CGG | 0.401543 | 6_4:+4778612 | None:intergenic |
| CGGCAAAGACAAGGCCTTGT+TGG | 0.412654 | 6_4:+4776039 | None:intergenic |
| ATATATGTTCTTGATGCATA+TGG | 0.423567 | 6_4:-4775858 | Msa0972470:CDS |
| AATCTGAAAGCTGAAGAATA+TGG | 0.427295 | 6_4:-4775576 | Msa0972470:CDS |
| CGGTGGTAGTGGGTGGTGGG+CGG | 0.427813 | 6_4:+4778605 | None:intergenic |
| TGTGCCTTCATGCTTGAAAT+GGG | 0.431254 | 6_4:-4775667 | Msa0972470:CDS |
| GCATGTTGGAGCAGCCATAT+TGG | 0.431934 | 6_4:-4775690 | Msa0972470:CDS |
| GATATTAAATTCAGCAATGA+TGG | 0.432124 | 6_4:-4775915 | Msa0972470:CDS |
| TTGAGCAGGGACGGTGGTAG+TGG | 0.434314 | 6_4:+4778594 | None:intergenic |
| TTCGATTGATTTCCATCGTA+AGG | 0.442446 | 6_4:-4776444 | Msa0972470:CDS |
| GTTCTGTCATATGCTCTTCA+AGG | 0.445567 | 6_4:-4776292 | Msa0972470:CDS |
| TAGTGGCAGGCTCAGGAGGC+GGG | 0.458698 | 6_4:-4775752 | Msa0972470:CDS |
| GAAGAGCATATGACAGAACT+TGG | 0.462044 | 6_4:+4776296 | None:intergenic |
| TGACCACAGTGTAAGGTTAT+GGG | 0.462418 | 6_4:-4776126 | Msa0972470:CDS |
| GGACGGTGGTAGTGGGTGGT+GGG | 0.463642 | 6_4:+4778602 | None:intergenic |
| TGTGCGATTGATTATTGGGC+TGG | 0.464839 | 6_4:+4778711 | None:intergenic |
| GTCTTTGCCGTAGCAATGGA+AGG | 0.466359 | 6_4:-4776026 | Msa0972470:CDS |
| TTGGGGCTGAAGTCCTGCTT+CGG | 0.472052 | 6_4:+4775542 | None:intergenic |
| CGCGTACATGTAAGATTCCC+TGG | 0.474657 | 6_4:+4776084 | None:intergenic |
| CCGCTGCCTACGATACTTCA+AGG | 0.476986 | 6_4:-4776216 | Msa0972470:CDS |
| GAAATTACCTGAAATTGAGC+AGG | 0.481956 | 6_4:+4778580 | None:intergenic |
| GAGGCGGGACCATGCACGCT+TGG | 0.482153 | 6_4:-4775737 | Msa0972470:CDS |
| TCTACGTGTAAATGCATGCC+AGG | 0.490219 | 6_4:-4776102 | Msa0972470:CDS |
| GTGCGATTGATTATTGGGCT+GGG | 0.492216 | 6_4:+4778712 | None:intergenic |
| GTTCTGTTGACCACAGTGTA+AGG | 0.493412 | 6_4:-4776133 | Msa0972470:CDS |
| ATCAATGATAGCTTCATGTC+TGG | 0.494202 | 6_4:-4776155 | Msa0972470:CDS |
| GGCGGCACAGACGCCGAAGC+AGG | 0.497543 | 6_4:-4775555 | Msa0972470:CDS |
| GACATGAAGCTATCATTGAT+AGG | 0.501421 | 6_4:+4776158 | None:intergenic |
| ATCTCATGGTACCTCAATAG+AGG | 0.509631 | 6_4:-4775802 | Msa0972470:CDS |
| GACAAGGCCTTGTTGGTCAT+AGG | 0.519019 | 6_4:+4776046 | None:intergenic |
| CCACTACATACTTCCCGTCT+GGG | 0.519962 | 6_4:+4775769 | None:intergenic |
| GACGGGAAGTATGTAGTGGC+AGG | 0.522246 | 6_4:-4775765 | Msa0972470:CDS |
| GATGATTTATTGGTCACAGC+TGG | 0.522307 | 6_4:-4776422 | Msa0972470:CDS |
| TAATCATCTCTCTCCGTCGA+CGG | 0.523790 | 6_4:-4778648 | Msa0972470:CDS |
| AGTTGAGGCTGCAGCAAACA+TGG | 0.526145 | 6_4:+4775632 | None:intergenic |
| GTAGTGGCAGGCTCAGGAGG+CGG | 0.527933 | 6_4:-4775753 | Msa0972470:CDS |
| AGGTACAATTTGGAGTCTAC+CGG | 0.528433 | 6_4:-4776272 | Msa0972470:CDS |
| AAGTATGTAGTGGCAGGCTC+AGG | 0.532223 | 6_4:-4775759 | Msa0972470:CDS |
| CCTTGTCTTTGCCGTAGCAA+TGG | 0.536478 | 6_4:-4776030 | Msa0972470:CDS |
| AGGCTGCAGCAAACATGGCT+CGG | 0.538980 | 6_4:+4775637 | None:intergenic |
| GAACAGAGCAACGCCGTCGA+CGG | 0.544315 | 6_4:+4778635 | None:intergenic |
| TAAATACCTCAACGATTCTC+CGG | 0.546938 | 6_4:+4776253 | None:intergenic |
| AGAGAGGAGAGAGCGATGAA+TGG | 0.547467 | 6_4:+4778679 | None:intergenic |
| TGCACGCTTGGAGTATTGAC+AGG | 0.554704 | 6_4:-4775725 | Msa0972470:CDS |
| GAGGCTACATTTACCCCAGA+CGG | 0.561514 | 6_4:-4775783 | Msa0972470:CDS |
| TGAGCAGGGACGGTGGTAGT+GGG | 0.562352 | 6_4:+4778595 | None:intergenic |
| TTTAGTTTGGAACCATCTCA+TGG | 0.564025 | 6_4:-4775816 | Msa0972470:CDS |
| TCTTTGCCGTAGCAATGGAA+GGG | 0.575146 | 6_4:-4776025 | Msa0972470:CDS |
| TATGTAGTGGCAGGCTCAGG+AGG | 0.576632 | 6_4:-4775756 | Msa0972470:CDS |
| CTTTGCCGTAGCAATGGAAG+GGG | 0.578605 | 6_4:-4776024 | Msa0972470:CDS |
| GTCAATACTCCAAGCGTGCA+TGG | 0.585442 | 6_4:+4775728 | None:intergenic |
| ACCGACAAGAAAAGTGTCGA+AGG | 0.593960 | 6_4:+4775959 | None:intergenic |
| TACCTGAAATTGAGCAGGGA+CGG | 0.595381 | 6_4:+4778585 | None:intergenic |
| GATTCACGTTCATATGACAA+AGG | 0.595643 | 6_4:-4775984 | Msa0972470:CDS |
| AATAATCAATCGCACAACAA+AGG | 0.599720 | 6_4:-4778704 | Msa0972470:CDS |
| GCAGGGACGGTGGTAGTGGG+TGG | 0.600758 | 6_4:+4778598 | None:intergenic |
| GCAGCAAACATGGCTCGGCG+AGG | 0.601478 | 6_4:+4775642 | None:intergenic |
| CCAAAATGTGAGAACAGTTG+AGG | 0.608499 | 6_4:+4775617 | None:intergenic |
| GATGATTAGATGAAGCAGAG+AGG | 0.609920 | 6_4:+4778663 | None:intergenic |
| GGTAAATGTAGCCTCTATTG+AGG | 0.612541 | 6_4:+4775791 | None:intergenic |
| TCTATTGAGGTACCATGAGA+TGG | 0.615901 | 6_4:+4775804 | None:intergenic |
| CCAATAAATCATCCTTACGA+TGG | 0.616705 | 6_4:+4776432 | None:intergenic |
| CTGAAATTGAGCAGGGACGG+TGG | 0.616934 | 6_4:+4778588 | None:intergenic |
| TGTCGGTGGTGATACTGCTG+AGG | 0.617340 | 6_4:-4775943 | Msa0972470:CDS |
| GGAGCCCATTTCAAGCATGA+AGG | 0.618503 | 6_4:+4775663 | None:intergenic |
| TGTTGGTCATAGGCAACAGT+AGG | 0.620319 | 6_4:+4776056 | None:intergenic |
| GGAATCACGAGGTAGCATGT+TGG | 0.625091 | 6_4:-4775704 | Msa0972470:CDS |
| CCATTGCTACGGCAAAGACA+AGG | 0.633354 | 6_4:+4776030 | None:intergenic |
| CCTTGAAGTATCGTAGGCAG+CGG | 0.633936 | 6_4:+4776216 | None:intergenic |
| TATGCCCCTTGAAGTATCGT+AGG | 0.635946 | 6_4:+4776210 | None:intergenic |
| TATGTTCTTGATGCATATGG+AGG | 0.651997 | 6_4:-4775855 | Msa0972470:CDS |
| AAGAGCATATGACAGAACTT+GGG | 0.654133 | 6_4:+4776297 | None:intergenic |
| AAATTACCTGAAATTGAGCA+GGG | 0.654341 | 6_4:+4778581 | None:intergenic |
| ACCACTTATCATAAGAAACA+TGG | 0.669454 | 6_4:-4776347 | Msa0972470:CDS |
| CTACGTGTAAATGCATGCCA+GGG | 0.671133 | 6_4:-4776101 | Msa0972470:CDS |
| CCGACAAGAAAAGTGTCGAA+GGG | 0.674207 | 6_4:+4775960 | None:intergenic |
| CACTACATACTTCCCGTCTG+GGG | 0.675821 | 6_4:+4775770 | None:intergenic |
| CAGGGAATCTTACATGTACG+CGG | 0.690267 | 6_4:-4776083 | Msa0972470:CDS |
| AGTCTACCGGAGAATCGTTG+AGG | 0.691573 | 6_4:-4776259 | Msa0972470:CDS |
| TTTGCCGTAGCAATGGAAGG+GGG | 0.702301 | 6_4:-4776023 | Msa0972470:CDS |
| CTGAAAGCTGAAGAATATGG+CGG | 0.702890 | 6_4:-4775573 | Msa0972470:CDS |
| GCTGCCTACGATACTTCAAG+GGG | 0.709960 | 6_4:-4776214 | Msa0972470:CDS |
| TTTATTGGTCACAGCTGGTG+AGG | 0.710015 | 6_4:-4776417 | Msa0972470:CDS |
| GAGTATTGACAGGAATCACG+AGG | 0.726880 | 6_4:-4775715 | Msa0972470:CDS |
| ACTGTTGCCTATGACCAACA+AGG | 0.730445 | 6_4:-4776053 | Msa0972470:CDS |
| TATGGAGGAGATAAGCGCTG+CGG | 0.743293 | 6_4:-4775840 | Msa0972470:CDS |
| GATCCCATAACCTTACACTG+TGG | 0.791126 | 6_4:+4776123 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATGATTATTATAAAAAAA+TGG | + | chr6_4:4775725-4775744 | None:intergenic | 10.0% |
| !!! | TTTTTACAAATTTATATACA+TGG | - | chr6_4:4776636-4776655 | Msa0972470:intron | 10.0% |
| !!! | ATAACTTATAAGTATAATTT+TGG | + | chr6_4:4777102-4777121 | None:intergenic | 10.0% |
| !! | TGAATGATTATTATAAAAAA+TGG | - | chr6_4:4777452-4777471 | Msa0972470:intron | 10.0% |
| !! | TTATTTACAGTTTAAATATT+GGG | - | chr6_4:4777594-4777613 | Msa0972470:intron | 10.0% |
| !!! | AATTGTGTTTTTTTTTAATT+AGG | - | chr6_4:4777635-4777654 | Msa0972470:intron | 10.0% |
| !!! | ATTGTGTTTTTTTTTAATTA+GGG | - | chr6_4:4777636-4777655 | Msa0972470:intron | 10.0% |
| !! | ATAAAAAAATGGTTAACATA+AGG | + | chr6_4:4775714-4775733 | None:intergenic | 15.0% |
| !! | AATTTCATGTAATAATAAAG+TGG | + | chr6_4:4776465-4776484 | None:intergenic | 15.0% |
| !! | AGAATGTGTAAAATTTAAAT+CGG | + | chr6_4:4776615-4776634 | None:intergenic | 15.0% |
| !! | GTTATTTACAGTTTAAATAT+TGG | - | chr6_4:4777593-4777612 | Msa0972470:intron | 15.0% |
| !!! | TTGTGTTTTTTTTTAATTAG+GGG | - | chr6_4:4777637-4777656 | Msa0972470:intron | 15.0% |
| !!! | ATAATGTTTTAGTGTATTTG+AGG | - | chr6_4:4775769-4775788 | Msa0972470:CDS | 20.0% |
| !! | AGCAAGGAAAATATATAATA+TGG | - | chr6_4:4776260-4776279 | Msa0972470:CDS | 20.0% |
| !! | ATACTATATGTTAGTAAAAG+AGG | - | chr6_4:4776346-4776365 | Msa0972470:CDS | 20.0% |
| !!! | TAAAATCTACTTAAAAGCAT+TGG | - | chr6_4:4777355-4777374 | Msa0972470:intron | 20.0% |
| !!! | TATTTGAGGAGTAATTTGTT+TGG | - | chr6_4:4775783-4775802 | Msa0972470:CDS | 25.0% |
| !!! | CTTTCAAGTAGAATTGATTT+TGG | - | chr6_4:4775980-4775999 | Msa0972470:CDS | 25.0% |
| ! | GATTGACAGTTTAATTAACT+TGG | + | chr6_4:4776286-4776305 | None:intergenic | 25.0% |
| ! | ACAGTTTCAAAATGTAAAAG+AGG | - | chr6_4:4776387-4776406 | Msa0972470:CDS | 25.0% |
| ! | CTAACAATCAATCTTCTATT+AGG | + | chr6_4:4776552-4776571 | None:intergenic | 25.0% |
| ! | ATGTGTAAAATTTAAATCGG+TGG | + | chr6_4:4776612-4776631 | None:intergenic | 25.0% |
| !!! | TCTCAAAATTTTAGTTGTGT+TGG | - | chr6_4:4776983-4777002 | Msa0972470:intron | 25.0% |
| ! | TCAAGGCTTCAAAAAAAATT+AGG | - | chr6_4:4777074-4777093 | Msa0972470:intron | 25.0% |
| ! | TTTCCTTCTTTATACGATTT+CGG | + | chr6_4:4777218-4777237 | None:intergenic | 25.0% |
| ! | AATCGTATAAAGAAGGAAAA+TGG | - | chr6_4:4777219-4777238 | Msa0972470:intron | 25.0% |
| ! | ATCGTATAAAGAAGGAAAAT+GGG | - | chr6_4:4777220-4777239 | Msa0972470:intron | 25.0% |
| ! | ATAATGTTTGAGTGTATTTG+AGG | + | chr6_4:4777409-4777428 | None:intergenic | 25.0% |
| ! | TACATATCTCCAATTTGATT+GGG | - | chr6_4:4777677-4777696 | Msa0972470:intron | 25.0% |
| ! | GATATTAAATTCAGCAATGA+TGG | - | chr6_4:4778333-4778352 | Msa0972470:intron | 25.0% |
| ! | ATATATGTTCTTGATGCATA+TGG | - | chr6_4:4778390-4778409 | Msa0972470:intron | 25.0% |
| TTGTTGTGCGATTGATTATT+GGG | + | chr6_4:4775544-4775563 | None:intergenic | 30.0% | |
| ! | TTTGTTGTGCGATTGATTAT+TGG | + | chr6_4:4775545-4775564 | None:intergenic | 30.0% |
| AATAATCAATCGCACAACAA+AGG | - | chr6_4:4775544-4775563 | Msa0972470:CDS | 30.0% | |
| AAATTACCTGAAATTGAGCA+GGG | + | chr6_4:4775670-4775689 | None:intergenic | 30.0% | |
| TACACCTCGAAAATAAATTC+CGG | + | chr6_4:4775875-4775894 | None:intergenic | 30.0% | |
| !! | AGAATTGTTTCTGACATGTT+TGG | - | chr6_4:4775894-4775913 | Msa0972470:CDS | 30.0% |
| !! | CTTTCGAGTAGAATTGATTT+TGG | - | chr6_4:4775920-4775939 | Msa0972470:CDS | 30.0% |
| !! | TCAAGTAGAATTGATTTTGG+AGG | - | chr6_4:4775983-4776002 | Msa0972470:CDS | 30.0% |
| ! | AGAATTGATTCTCACATGTT+TGG | - | chr6_4:4776009-4776028 | Msa0972470:CDS | 30.0% |
| ! | TTTTTCTCAAATGTTTGTGC+AGG | + | chr6_4:4776090-4776109 | None:intergenic | 30.0% |
| ATATACCAGAGACATGAAAT+TGG | + | chr6_4:4776189-4776208 | None:intergenic | 30.0% | |
| ATTTCATGTCTCTGGTATAT+CGG | - | chr6_4:4776189-4776208 | Msa0972470:CDS | 30.0% | |
| CTATATGTTAGTAAAAGAGG+AGG | - | chr6_4:4776349-4776368 | Msa0972470:CDS | 30.0% | |
| !! | AATGTAAAAGAGGAGTGTTA+TGG | - | chr6_4:4776397-4776416 | Msa0972470:CDS | 30.0% |
| AATAAAGTGGATGTTAGAGA+CGG | + | chr6_4:4776452-4776471 | None:intergenic | 30.0% | |
| GTAAAATTTAAATCGGTGGT+CGG | + | chr6_4:4776608-4776627 | None:intergenic | 30.0% | |
| ! | AGAATTGATTCTCACATGTT+TGG | - | chr6_4:4776009-4776028 | Msa0972470:CDS | 30.0% |
| TCAAGTAGAATTGATTATGG+AGG | + | chr6_4:4776749-4776768 | None:intergenic | 30.0% | |
| GCTTCAAGTAGAATTGATTA+TGG | + | chr6_4:4776752-4776771 | None:intergenic | 30.0% | |
| AATCAATTCTACTTGAAGCT+AGG | - | chr6_4:4776753-4776772 | Msa0972470:intron | 30.0% | |
| ATTATGTGTCAATGTCGTAT+CGG | + | chr6_4:4776943-4776962 | None:intergenic | 30.0% | |
| TTCCTTCTTTATACGATTTC+GGG | + | chr6_4:4777217-4777236 | None:intergenic | 30.0% | |
| TCGTATAAAGAAGGAAAATG+GGG | - | chr6_4:4777221-4777240 | Msa0972470:intron | 30.0% | |
| ! | TATTTGAGGAGCAATTTGTT+AGG | + | chr6_4:4777395-4777414 | None:intergenic | 30.0% |
| !!! | TCTTTTTTGCCTTAGTTACA+AGG | - | chr6_4:4777544-4777563 | Msa0972470:intron | 30.0% |
| AATAGTCATCCTTGTAACTA+AGG | + | chr6_4:4777556-4777575 | None:intergenic | 30.0% | |
| GTACATATCTCCAATTTGAT+TGG | - | chr6_4:4777676-4777695 | Msa0972470:intron | 30.0% | |
| ATATATCTTCCCAACATAGT+CGG | + | chr6_4:4777785-4777804 | None:intergenic | 30.0% | |
| ACCACTTATCATAAGAAACA+TGG | - | chr6_4:4777901-4777920 | Msa0972470:intron | 30.0% | |
| ACCATGTTTCTTATGATAAG+TGG | + | chr6_4:4777905-4777924 | None:intergenic | 30.0% | |
| TATTCTTCAGCTTTCAGATT+CGG | + | chr6_4:4778672-4778691 | None:intergenic | 30.0% | |
| AATCTGAAAGCTGAAGAATA+TGG | - | chr6_4:4778672-4778691 | Msa0972470:CDS | 30.0% | |
| GAAATTACCTGAAATTGAGC+AGG | + | chr6_4:4775671-4775690 | None:intergenic | 35.0% | |
| !! | TCGAGTAGAATTGATTTTGG+AGG | - | chr6_4:4775923-4775942 | Msa0972470:CDS | 35.0% |
| ! | AGAATTGATTCTGGCATGTT+TGG | - | chr6_4:4775949-4775968 | Msa0972470:CDS | 35.0% |
| ACTAGTGAGGTTTGATTGTT+TGG | + | chr6_4:4776156-4776175 | None:intergenic | 35.0% | |
| TTTCATGTCTCTGGTATATC+GGG | - | chr6_4:4776190-4776209 | Msa0972470:CDS | 35.0% | |
| GTAGCAAATTGTTCAAAGCA+AGG | - | chr6_4:4776244-4776263 | Msa0972470:CDS | 35.0% | |
| AAAAGAGGAGGAGAAAATTG+TGG | - | chr6_4:4776361-4776380 | Msa0972470:CDS | 35.0% | |
| ATAAAATTGTAAGACGCGCA+TGG | - | chr6_4:4776520-4776539 | Msa0972470:intron | 35.0% | |
| AGCCAGAAAATTCGAATAGT+GGG | + | chr6_4:4776666-4776685 | None:intergenic | 35.0% | |
| TGAGAATCAATTCTACTCAG+TGG | + | chr6_4:4776692-4776711 | None:intergenic | 35.0% | |
| ! | GAGATTTTACCTGTTGTTGT+CGG | - | chr6_4:4776815-4776834 | Msa0972470:intron | 35.0% |
| ! | AGATTTTACCTGTTGTTGTC+GGG | - | chr6_4:4776816-4776835 | Msa0972470:intron | 35.0% |
| AAAAACTGTCTGTGCTTCAT+AGG | + | chr6_4:4776877-4776896 | None:intergenic | 35.0% | |
| ! | TATGAAGCACAGACAGTTTT+TGG | - | chr6_4:4776876-4776895 | Msa0972470:intron | 35.0% |
| ! | AATTTTCATGTTTGTCGCGA+TGG | - | chr6_4:4777140-4777159 | Msa0972470:intron | 35.0% |
| TTCCCGAAATCGTATAAAGA+AGG | - | chr6_4:4777212-4777231 | Msa0972470:intron | 35.0% | |
| GCTAATGAATGTCATAACCT+AGG | + | chr6_4:4777253-4777272 | None:intergenic | 35.0% | |
| ! | TTCGATTGATTTCCATCGTA+AGG | - | chr6_4:4777804-4777823 | Msa0972470:intron | 35.0% |
| CCAATAAATCATCCTTACGA+TGG | + | chr6_4:4777819-4777838 | None:intergenic | 35.0% | |
| CCATCGTAAGGATGATTTAT+TGG | - | chr6_4:4777816-4777835 | Msa0972470:intron | 35.0% | |
| ! | AAGAGCATATGACAGAACTT+GGG | + | chr6_4:4777954-4777973 | None:intergenic | 35.0% |
| ATGCTCTTCAAGGTACAATT+TGG | - | chr6_4:4777966-4777985 | Msa0972470:intron | 35.0% | |
| TAAATACCTCAACGATTCTC+CGG | + | chr6_4:4777998-4778017 | None:intergenic | 35.0% | |
| GACATGAAGCTATCATTGAT+AGG | + | chr6_4:4778093-4778112 | None:intergenic | 35.0% | |
| ATCAATGATAGCTTCATGTC+TGG | - | chr6_4:4778093-4778112 | Msa0972470:intron | 35.0% | |
| GATTCACGTTCATATGACAA+AGG | - | chr6_4:4778264-4778283 | Msa0972470:intron | 35.0% | |
| TATGTTCTTGATGCATATGG+AGG | - | chr6_4:4778393-4778412 | Msa0972470:intron | 35.0% | |
| !! | TTTAGTTTGGAACCATCTCA+TGG | - | chr6_4:4778432-4778451 | Msa0972470:intron | 35.0% |
| GATGATTAGATGAAGCAGAG+AGG | + | chr6_4:4775588-4775607 | None:intergenic | 40.0% | |
| CTCGAAAATAAATTCCGGTC+CGG | + | chr6_4:4775870-4775889 | None:intergenic | 40.0% | |
| ! | TGGAGGTGTAGAATTGATTC+TGG | - | chr6_4:4775940-4775959 | Msa0972470:CDS | 40.0% |
| TGATTCTGGCATGTTTGGAT+TGG | - | chr6_4:4775954-4775973 | Msa0972470:CDS | 40.0% | |
| ! | TTGCTTTCGAGTAGAATCAG+TGG | - | chr6_4:4776032-4776051 | Msa0972470:CDS | 40.0% |
| ! | TCAAACCTCACTAGTTCTCT+TGG | - | chr6_4:4776161-4776180 | Msa0972470:CDS | 40.0% |
| TTCATGTCTCTGGTATATCG+GGG | - | chr6_4:4776191-4776210 | Msa0972470:CDS | 40.0% | |
| GTATATCGGGGTTATTAGTG+CGG | - | chr6_4:4776203-4776222 | Msa0972470:CDS | 40.0% | |
| TATATCGGGGTTATTAGTGC+GGG | - | chr6_4:4776204-4776223 | Msa0972470:CDS | 40.0% | |
| ! | TAAATCGGTGGTCGGTATTT+TGG | + | chr6_4:4776600-4776619 | None:intergenic | 40.0% |
| CCAGAAAATTCGAATAGTGG+GGG | + | chr6_4:4776664-4776683 | None:intergenic | 40.0% | |
| GCCAGAAAATTCGAATAGTG+GGG | + | chr6_4:4776665-4776684 | None:intergenic | 40.0% | |
| GAGCCAGAAAATTCGAATAG+TGG | + | chr6_4:4776667-4776686 | None:intergenic | 40.0% | |
| GAATCAATTCTACTCAGTGG+CGG | + | chr6_4:4776689-4776708 | None:intergenic | 40.0% | |
| !! | GCACAGACAGTTTTTGGATT+AGG | - | chr6_4:4776882-4776901 | Msa0972470:intron | 40.0% |
| CAGTCTATGAAGCACAGATA+CGG | + | chr6_4:4777038-4777057 | None:intergenic | 40.0% | |
| !!! | TTTTTTGAAGCCTTGAGCCA+CGG | + | chr6_4:4777070-4777089 | None:intergenic | 40.0% |
| TATCTCCAATTTGATTGGGC+CGG | - | chr6_4:4777681-4777700 | Msa0972470:intron | 40.0% | |
| CCCAACATAGTCGGAAAAAA+CGG | + | chr6_4:4777776-4777795 | None:intergenic | 40.0% | |
| !!! | CCGTTTTTTCCGACTATGTT+GGG | - | chr6_4:4777773-4777792 | Msa0972470:intron | 40.0% |
| GATGATTTATTGGTCACAGC+TGG | - | chr6_4:4777826-4777845 | Msa0972470:intron | 40.0% | |
| ! | GAAGAGCATATGACAGAACT+TGG | + | chr6_4:4777955-4777974 | None:intergenic | 40.0% |
| GTTCTGTCATATGCTCTTCA+AGG | - | chr6_4:4777956-4777975 | Msa0972470:intron | 40.0% | |
| ! | AGGTACAATTTGGAGTCTAC+CGG | - | chr6_4:4777976-4777995 | Msa0972470:intron | 40.0% |
| TTGACCACAGTGTAAGGTTA+TGG | - | chr6_4:4778121-4778140 | Msa0972470:intron | 40.0% | |
| TGACCACAGTGTAAGGTTAT+GGG | - | chr6_4:4778122-4778141 | Msa0972470:intron | 40.0% | |
| ! | TCTATTGAGGTACCATGAGA+TGG | + | chr6_4:4778447-4778466 | None:intergenic | 40.0% |
| ATCTCATGGTACCTCAATAG+AGG | - | chr6_4:4778446-4778465 | Msa0972470:intron | 40.0% | |
| GGTAAATGTAGCCTCTATTG+AGG | + | chr6_4:4778460-4778479 | None:intergenic | 40.0% | |
| TGTGCCTTCATGCTTGAAAT+GGG | - | chr6_4:4778581-4778600 | Msa0972470:intron | 40.0% | |
| CCAAAATGTGAGAACAGTTG+AGG | + | chr6_4:4778634-4778653 | None:intergenic | 40.0% | |
| ! | CCTCAACTGTTCTCACATTT+TGG | - | chr6_4:4778631-4778650 | Msa0972470:CDS | 40.0% |
| ! | TTCAGATTCGGTTCGTTGTT+TGG | + | chr6_4:4778660-4778679 | None:intergenic | 40.0% |
| CTGAAAGCTGAAGAATATGG+CGG | - | chr6_4:4778675-4778694 | Msa0972470:CDS | 40.0% | |
| GTGCGATTGATTATTGGGCT+GGG | + | chr6_4:4775539-4775558 | None:intergenic | 45.0% | |
| TGTGCGATTGATTATTGGGC+TGG | + | chr6_4:4775540-4775559 | None:intergenic | 45.0% | |
| TAATCATCTCTCTCCGTCGA+CGG | - | chr6_4:4775600-4775619 | Msa0972470:CDS | 45.0% | |
| TACCTGAAATTGAGCAGGGA+CGG | + | chr6_4:4775666-4775685 | None:intergenic | 45.0% | |
| !! | TGTTTTACGTCTAGAGCTGC+CGG | - | chr6_4:4775848-4775867 | Msa0972470:CDS | 45.0% |
| !! | CGGACCGGAATTTATTTTCG+AGG | - | chr6_4:4775868-4775887 | Msa0972470:CDS | 45.0% |
| ! | CTTTCGAGTAGAATCAGTGG+CGG | - | chr6_4:4776035-4776054 | Msa0972470:CDS | 45.0% |
| TCTCAAATGTTTGTGCAGGC+AGG | + | chr6_4:4776086-4776105 | None:intergenic | 45.0% | |
| TGGCACCAATTTCATGTCTC+TGG | - | chr6_4:4776181-4776200 | Msa0972470:CDS | 45.0% | |
| ATATCGGGGTTATTAGTGCG+GGG | - | chr6_4:4776205-4776224 | Msa0972470:CDS | 45.0% | |
| ! | CCCCCACTATTCGAATTTTC+TGG | - | chr6_4:4776661-4776680 | Msa0972470:intron | 45.0% |
| TCATAGGTTGCAGATGGTCA+GGG | + | chr6_4:4776861-4776880 | None:intergenic | 45.0% | |
| TTCATAGGTTGCAGATGGTC+AGG | + | chr6_4:4776862-4776881 | None:intergenic | 45.0% | |
| TGTGCTTCATAGGTTGCAGA+TGG | + | chr6_4:4776867-4776886 | None:intergenic | 45.0% | |
| ATGAAGCACAGATACGGACA+TGG | + | chr6_4:4777032-4777051 | None:intergenic | 45.0% | |
| TGTTTGTCGCGATGGTTCAA+TGG | - | chr6_4:4777148-4777167 | Msa0972470:intron | 45.0% | |
| ACGATTTCGGGAATCGAACA+CGG | + | chr6_4:4777205-4777224 | None:intergenic | 45.0% | |
| GGAAAATGGGGATCAAACCT+AGG | - | chr6_4:4777233-4777252 | Msa0972470:intron | 45.0% | |
| AGCTGGGTGGTATATGCTTA+TGG | + | chr6_4:4777275-4777294 | None:intergenic | 45.0% | |
| GAGGATGACAGCATCACTTA+CGG | - | chr6_4:4777711-4777730 | Msa0972470:intron | 45.0% | |
| AAAAACGGCTCCTATGGACA+TGG | + | chr6_4:4777761-4777780 | None:intergenic | 45.0% | |
| !!! | GCCGTTTTTTCCGACTATGT+TGG | - | chr6_4:4777772-4777791 | Msa0972470:intron | 45.0% |
| TTTATTGGTCACAGCTGGTG+AGG | - | chr6_4:4777831-4777850 | Msa0972470:intron | 45.0% | |
| !! | TATGCCCCTTGAAGTATCGT+AGG | + | chr6_4:4778041-4778060 | None:intergenic | 45.0% |
| GTTCTGTTGACCACAGTGTA+AGG | - | chr6_4:4778115-4778134 | Msa0972470:intron | 45.0% | |
| GATCCCATAACCTTACACTG+TGG | + | chr6_4:4778128-4778147 | None:intergenic | 45.0% | |
| TCTACGTGTAAATGCATGCC+AGG | - | chr6_4:4778146-4778165 | Msa0972470:intron | 45.0% | |
| CTACGTGTAAATGCATGCCA+GGG | - | chr6_4:4778147-4778166 | Msa0972470:intron | 45.0% | |
| CAGGGAATCTTACATGTACG+CGG | - | chr6_4:4778165-4778184 | Msa0972470:intron | 45.0% | |
| TGTTGGTCATAGGCAACAGT+AGG | + | chr6_4:4778195-4778214 | None:intergenic | 45.0% | |
| ACTGTTGCCTATGACCAACA+AGG | - | chr6_4:4778195-4778214 | Msa0972470:intron | 45.0% | |
| TCTTTGCCGTAGCAATGGAA+GGG | - | chr6_4:4778223-4778242 | Msa0972470:intron | 45.0% | |
| !! | CCGACAAGAAAAGTGTCGAA+GGG | + | chr6_4:4778291-4778310 | None:intergenic | 45.0% |
| ! | CCCTTCGACACTTTTCTTGT+CGG | - | chr6_4:4778288-4778307 | Msa0972470:intron | 45.0% |
| !! | ACCGACAAGAAAAGTGTCGA+AGG | + | chr6_4:4778292-4778311 | None:intergenic | 45.0% |
| ! | TTCGACACTTTTCTTGTCGG+TGG | - | chr6_4:4778291-4778310 | Msa0972470:intron | 45.0% |
| ! | TAAGCGCTGCGGATTTAGTT+TGG | - | chr6_4:4778419-4778438 | Msa0972470:intron | 45.0% |
| !! | GAGTATTGACAGGAATCACG+AGG | - | chr6_4:4778533-4778552 | Msa0972470:intron | 45.0% |
| ! | AGCATGAAGGCACACCAATA+TGG | + | chr6_4:4778575-4778594 | None:intergenic | 45.0% |
| GTGTGCCTTCATGCTTGAAA+TGG | - | chr6_4:4778580-4778599 | Msa0972470:intron | 45.0% | |
| AGAGAGGAGAGAGCGATGAA+TGG | + | chr6_4:4775572-4775591 | None:intergenic | 50.0% | |
| ! | TGGTGCCAAGAGAACTAGTG+AGG | + | chr6_4:4776169-4776188 | None:intergenic | 50.0% |
| TTACCTGTTGTTGTCGGGTC+AGG | - | chr6_4:4776821-4776840 | Msa0972470:intron | 50.0% | |
| GTGCTTCATAGACTGCAACC+AGG | - | chr6_4:4777043-4777062 | Msa0972470:intron | 50.0% | |
| CGATTTCGGGAATCGAACAC+GGG | + | chr6_4:4777204-4777223 | None:intergenic | 50.0% | |
| AATTTGATTGGGCCGGTCCT+GGG | - | chr6_4:4777688-4777707 | Msa0972470:intron | 50.0% | |
| ATTGTCCGCACCATGTCCAT+AGG | - | chr6_4:4777748-4777767 | Msa0972470:intron | 50.0% | |
| GTCGGAAAAAACGGCTCCTA+TGG | + | chr6_4:4777767-4777786 | None:intergenic | 50.0% | |
| AGTCTACCGGAGAATCGTTG+AGG | - | chr6_4:4777989-4778008 | Msa0972470:intron | 50.0% | |
| !! | CCTTGAAGTATCGTAGGCAG+CGG | + | chr6_4:4778035-4778054 | None:intergenic | 50.0% |
| CGCTGCCTACGATACTTCAA+GGG | - | chr6_4:4778033-4778052 | Msa0972470:intron | 50.0% | |
| GCTGCCTACGATACTTCAAG+GGG | - | chr6_4:4778034-4778053 | Msa0972470:intron | 50.0% | |
| CGCGTACATGTAAGATTCCC+TGG | + | chr6_4:4778167-4778186 | None:intergenic | 50.0% | |
| !! | GACAAGGCCTTGTTGGTCAT+AGG | + | chr6_4:4778205-4778224 | None:intergenic | 50.0% |
| CCATTGCTACGGCAAAGACA+AGG | + | chr6_4:4778221-4778240 | None:intergenic | 50.0% | |
| CCTTGTCTTTGCCGTAGCAA+TGG | - | chr6_4:4778218-4778237 | Msa0972470:intron | 50.0% | |
| GTCTTTGCCGTAGCAATGGA+AGG | - | chr6_4:4778222-4778241 | Msa0972470:intron | 50.0% | |
| CTTTGCCGTAGCAATGGAAG+GGG | - | chr6_4:4778224-4778243 | Msa0972470:intron | 50.0% | |
| TTTGCCGTAGCAATGGAAGG+GGG | - | chr6_4:4778225-4778244 | Msa0972470:intron | 50.0% | |
| ! | TATGGAGGAGATAAGCGCTG+CGG | - | chr6_4:4778408-4778427 | Msa0972470:intron | 50.0% |
| GAGGCTACATTTACCCCAGA+CGG | - | chr6_4:4778465-4778484 | Msa0972470:intron | 50.0% | |
| AGGCTACATTTACCCCAGAC+GGG | - | chr6_4:4778466-4778485 | Msa0972470:intron | 50.0% | |
| CACTACATACTTCCCGTCTG+GGG | + | chr6_4:4778481-4778500 | None:intergenic | 50.0% | |
| CCACTACATACTTCCCGTCT+GGG | + | chr6_4:4778482-4778501 | None:intergenic | 50.0% | |
| AAGTATGTAGTGGCAGGCTC+AGG | - | chr6_4:4778489-4778508 | Msa0972470:intron | 50.0% | |
| GTCAATACTCCAAGCGTGCA+TGG | + | chr6_4:4778523-4778542 | None:intergenic | 50.0% | |
| !! | TGCACGCTTGGAGTATTGAC+AGG | - | chr6_4:4778523-4778542 | Msa0972470:intron | 50.0% |
| GGAATCACGAGGTAGCATGT+TGG | - | chr6_4:4778544-4778563 | Msa0972470:intron | 50.0% | |
| GCATGTTGGAGCAGCCATAT+TGG | - | chr6_4:4778558-4778577 | Msa0972470:intron | 50.0% | |
| GGAGCCCATTTCAAGCATGA+AGG | + | chr6_4:4778588-4778607 | None:intergenic | 50.0% | |
| AGTTGAGGCTGCAGCAAACA+TGG | + | chr6_4:4778619-4778638 | None:intergenic | 50.0% | |
| CTGAAATTGAGCAGGGACGG+TGG | + | chr6_4:4775663-4775682 | None:intergenic | 55.0% | |
| CACCGTCCCTGCTCAATTTC+AGG | - | chr6_4:4775661-4775680 | Msa0972470:CDS | 55.0% | |
| TCGAGTAGAATCAGTGGCGG+AGG | - | chr6_4:4776038-4776057 | Msa0972470:CDS | 55.0% | |
| ! | AGGCAGGTAGAGCCTTGTGT+GGG | - | chr6_4:4776058-4776077 | Msa0972470:CDS | 55.0% |
| AGGTTGCAGATGGTCAGGGT+CGG | + | chr6_4:4776857-4776876 | None:intergenic | 55.0% | |
| GATTAGGCGTGTCCCTGTGT+CGG | - | chr6_4:4776898-4776917 | Msa0972470:intron | 55.0% | |
| ATAGACTGCAACCAGGTCCG+TGG | - | chr6_4:4777050-4777069 | Msa0972470:intron | 55.0% | |
| ATACCACCCAGCTGTAGTGC+TGG | - | chr6_4:4777282-4777301 | Msa0972470:intron | 55.0% | |
| CAGGACCGGCCCAATCAAAT+TGG | + | chr6_4:4777689-4777708 | None:intergenic | 55.0% | |
| CAATTTGATTGGGCCGGTCC+TGG | - | chr6_4:4777687-4777706 | Msa0972470:intron | 55.0% | |
| ATTTGATTGGGCCGGTCCTG+GGG | - | chr6_4:4777689-4777708 | Msa0972470:intron | 55.0% | |
| CCGCTGCCTACGATACTTCA+AGG | - | chr6_4:4778032-4778051 | Msa0972470:intron | 55.0% | |
| ! | CGGCAAAGACAAGGCCTTGT+TGG | + | chr6_4:4778212-4778231 | None:intergenic | 55.0% |
| AGCTCCCCCTTCCATTGCTA+CGG | + | chr6_4:4778232-4778251 | None:intergenic | 55.0% | |
| TGTCGGTGGTGATACTGCTG+AGG | - | chr6_4:4778305-4778324 | Msa0972470:intron | 55.0% | |
| ! | CCCAGACGGGAAGTATGTAG+TGG | - | chr6_4:4778479-4778498 | Msa0972470:intron | 55.0% |
| GCCACTACATACTTCCCGTC+TGG | + | chr6_4:4778483-4778502 | None:intergenic | 55.0% | |
| ! | GACGGGAAGTATGTAGTGGC+AGG | - | chr6_4:4778483-4778502 | Msa0972470:intron | 55.0% |
| TATGTAGTGGCAGGCTCAGG+AGG | - | chr6_4:4778492-4778511 | Msa0972470:intron | 55.0% | |
| AGGCTGCAGCAAACATGGCT+CGG | + | chr6_4:4778614-4778633 | None:intergenic | 55.0% | |
| TTGGGGCTGAAGTCCTGCTT+CGG | + | chr6_4:4778709-4778728 | None:intergenic | 55.0% | |
| GAACAGAGCAACGCCGTCGA+CGG | + | chr6_4:4775616-4775635 | None:intergenic | 60.0% | |
| TGAGCAGGGACGGTGGTAGT+GGG | + | chr6_4:4775656-4775675 | None:intergenic | 60.0% | |
| TTGAGCAGGGACGGTGGTAG+TGG | + | chr6_4:4775657-4775676 | None:intergenic | 60.0% | |
| ! | TACGTCTAGAGCTGCCGGAC+CGG | - | chr6_4:4775853-4775872 | Msa0972470:CDS | 60.0% |
| ! | GTAGAATCAGTGGCGGAGGC+AGG | - | chr6_4:4776042-4776061 | Msa0972470:CDS | 60.0% |
| ! | GAGGCAGGTAGAGCCTTGTG+TGG | - | chr6_4:4776057-4776076 | Msa0972470:CDS | 60.0% |
| CCTCCTGACCCGACAACAAC+AGG | + | chr6_4:4776827-4776846 | None:intergenic | 60.0% | |
| CCTGTTGTTGTCGGGTCAGG+AGG | - | chr6_4:4776824-4776843 | Msa0972470:intron | 60.0% | |
| GTTGTCGGGTCAGGAGGATC+AGG | - | chr6_4:4776830-4776849 | Msa0972470:intron | 60.0% | |
| CACGACACGTGTCCGACACA+GGG | + | chr6_4:4776913-4776932 | None:intergenic | 60.0% | |
| ACACGACACGTGTCCGACAC+AGG | + | chr6_4:4776914-4776933 | None:intergenic | 60.0% | |
| CCAGCACCAGCACTACAGCT+GGG | + | chr6_4:4777291-4777310 | None:intergenic | 60.0% | |
| TCCAGCACCAGCACTACAGC+TGG | + | chr6_4:4777292-4777311 | None:intergenic | 60.0% | |
| GTGATGCTGTCATCCTCCCC+AGG | + | chr6_4:4777708-4777727 | None:intergenic | 60.0% | |
| CGGCTCCTATGGACATGGTG+CGG | + | chr6_4:4777756-4777775 | None:intergenic | 60.0% | |
| !! | GGACGGTGGTAGTGGGTGGT+GGG | + | chr6_4:4775649-4775668 | None:intergenic | 65.0% |
| TGCAGGCAGGAGCCCACACA+AGG | + | chr6_4:4776073-4776092 | None:intergenic | 65.0% | |
| GCAACCAGGTCCGTGGCTCA+AGG | - | chr6_4:4777057-4777076 | Msa0972470:intron | 65.0% | |
| GAAGCCTTGAGCCACGGACC+TGG | + | chr6_4:4777064-4777083 | None:intergenic | 65.0% | |
| GCACCAGCACTACAGCTGGG+TGG | + | chr6_4:4777288-4777307 | None:intergenic | 65.0% | |
| !! | CCCAGCTGTAGTGCTGGTGC+TGG | - | chr6_4:4777288-4777307 | Msa0972470:intron | 65.0% |
| GCTGTCATCCTCCCCAGGAC+CGG | + | chr6_4:4777703-4777722 | None:intergenic | 65.0% | |
| GTAGTGGCAGGCTCAGGAGG+CGG | - | chr6_4:4778495-4778514 | Msa0972470:intron | 65.0% | |
| TAGTGGCAGGCTCAGGAGGC+GGG | - | chr6_4:4778496-4778515 | Msa0972470:intron | 65.0% | |
| ! | GCAGCAAACATGGCTCGGCG+AGG | + | chr6_4:4778609-4778628 | None:intergenic | 65.0% |
| !! | AGTGGGTGGTGGGCGGTGGA+CGG | + | chr6_4:4775639-4775658 | None:intergenic | 70.0% |
| !! | TGGTAGTGGGTGGTGGGCGG+TGG | + | chr6_4:4775643-4775662 | None:intergenic | 70.0% |
| !! | CGGTGGTAGTGGGTGGTGGG+CGG | + | chr6_4:4775646-4775665 | None:intergenic | 70.0% |
| !! | GGGACGGTGGTAGTGGGTGG+TGG | + | chr6_4:4775650-4775669 | None:intergenic | 70.0% |
| !! | GCAGGGACGGTGGTAGTGGG+TGG | + | chr6_4:4775653-4775672 | None:intergenic | 70.0% |
| TGATTGGGCCGGTCCTGGGG+AGG | - | chr6_4:4777692-4777711 | Msa0972470:intron | 70.0% | |
| GAGGCGGGACCATGCACGCT+TGG | - | chr6_4:4778511-4778530 | Msa0972470:intron | 70.0% | |
| !! | GTGGGTGGTGGGCGGTGGAC+GGG | + | chr6_4:4775638-4775657 | None:intergenic | 75.0% |
| GGCGGCACAGACGCCGAAGC+AGG | - | chr6_4:4778693-4778712 | Msa0972470:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 4775536 | 4778734 | 4775536 | ID=Msa0972470;Name=Msa0972470 |
| chr6_4 | mRNA | 4775536 | 4778734 | 4775536 | ID=Msa0972470-mRNA-1;Parent=Msa0972470;Name=Msa0972470-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|0|0|2|0|361 |
| chr6_4 | exon | 4778588 | 4778734 | 4778588 | ID=Msa0972470-mRNA-1:exon:2028;Parent=Msa0972470-mRNA-1 |
| chr6_4 | exon | 4775536 | 4776471 | 4775536 | ID=Msa0972470-mRNA-1:exon:2027;Parent=Msa0972470-mRNA-1 |
| chr6_4 | CDS | 4778588 | 4778734 | 4778588 | ID=Msa0972470-mRNA-1:cds;Parent=Msa0972470-mRNA-1 |
| chr6_4 | CDS | 4775536 | 4776471 | 4775536 | ID=Msa0972470-mRNA-1:cds;Parent=Msa0972470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
