Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412190 | AFK40784.1 | 95.890 | 146 | 6 | 0 | 1 | 146 | 127 | 272 | 2.69e-99 | 296 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412190 | sp|P53537|PHSH_VICFA | 97.260 | 146 | 4 | 0 | 1 | 146 | 697 | 842 | 1.69e-96 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412190 | I3SKJ2 | 95.890 | 146 | 6 | 0 | 1 | 146 | 127 | 272 | 1.29e-99 | 296 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014410 | Msa0412190 | 0.865669 | 4.992602e-65 | -8.615850e-47 |
| Msa0017340 | Msa0412190 | 0.800435 | 1.443053e-48 | -8.615850e-47 |
| Msa0035290 | Msa0412190 | 0.808793 | 2.600897e-50 | -8.615850e-47 |
| Msa0035400 | Msa0412190 | 0.846237 | 2.464485e-59 | -8.615850e-47 |
| Msa0044180 | Msa0412190 | 0.832399 | 9.666752e-56 | -8.615850e-47 |
| Msa0044710 | Msa0412190 | 0.809012 | 2.334920e-50 | -8.615850e-47 |
| Msa0064550 | Msa0412190 | 0.815897 | 7.303234e-52 | -8.615850e-47 |
| Msa0090860 | Msa0412190 | 0.816734 | 4.747878e-52 | -8.615850e-47 |
| Msa0108070 | Msa0412190 | 0.834559 | 2.794452e-56 | -8.615850e-47 |
| Msa0109490 | Msa0412190 | 0.801518 | 8.670271e-49 | -8.615850e-47 |
| Msa0127580 | Msa0412190 | -0.802062 | 6.702888e-49 | -8.615850e-47 |
| Msa0129360 | Msa0412190 | 0.817588 | 3.050987e-52 | -8.615850e-47 |
| Msa0138390 | Msa0412190 | -0.809957 | 1.463690e-50 | -8.615850e-47 |
| Msa0142420 | Msa0412190 | 0.839147 | 1.884920e-57 | -8.615850e-47 |
| Msa0154200 | Msa0412190 | 0.803011 | 4.273314e-49 | -8.615850e-47 |
| Msa0154220 | Msa0412190 | 0.811917 | 5.507093e-51 | -8.615850e-47 |
| Msa0154270 | Msa0412190 | 0.874834 | 4.952093e-68 | -8.615850e-47 |
| Msa0155610 | Msa0412190 | 0.828490 | 8.731713e-55 | -8.615850e-47 |
| Msa0172180 | Msa0412190 | -0.824524 | 7.705522e-54 | -8.615850e-47 |
| Msa0176040 | Msa0412190 | 0.823641 | 1.241788e-53 | -8.615850e-47 |
| Msa0183560 | Msa0412190 | 0.847366 | 1.210147e-59 | -8.615850e-47 |
| Msa0197030 | Msa0412190 | 0.847489 | 1.119504e-59 | -8.615850e-47 |
| Msa0218530 | Msa0412190 | -0.800688 | 1.281376e-48 | -8.615850e-47 |
| Msa0364780 | Msa0412190 | 0.892648 | 1.308110e-74 | -8.615850e-47 |
| Msa0379100 | Msa0412190 | 0.809238 | 2.089099e-50 | -8.615850e-47 |
| Msa0379410 | Msa0412190 | 0.807124 | 5.890777e-50 | -8.615850e-47 |
| Msa0384530 | Msa0412190 | 0.839262 | 1.760503e-57 | -8.615850e-47 |
| Msa0392050 | Msa0412190 | 0.842720 | 2.176468e-58 | -8.615850e-47 |
| Msa0412190 | Msa0412250 | 0.817889 | 2.609293e-52 | -8.615850e-47 |
| Msa0412190 | Msa0418430 | 0.820708 | 5.945972e-53 | -8.615850e-47 |
| Msa0412190 | Msa0428730 | 0.805349 | 1.393177e-49 | -8.615850e-47 |
| Msa0412190 | Msa0435010 | 0.846539 | 2.038484e-59 | -8.615850e-47 |
| Msa0412190 | Msa0456760 | 0.918833 | 9.559390e-87 | -8.615850e-47 |
| Msa0412190 | Msa0462590 | 0.816530 | 5.274172e-52 | -8.615850e-47 |
| Msa0412190 | Msa0465800 | 0.857708 | 1.357936e-62 | -8.615850e-47 |
| Msa0412190 | Msa0469950 | 0.844141 | 9.082945e-59 | -8.615850e-47 |
| Msa0412190 | Msa0472740 | 0.864142 | 1.503696e-64 | -8.615850e-47 |
| Msa0412190 | Msa0475240 | 0.800998 | 1.107683e-48 | -8.615850e-47 |
| Msa0412190 | Msa0479100 | 0.805818 | 1.110829e-49 | -8.615850e-47 |
| Msa0412190 | Msa0481490 | 0.810532 | 1.100257e-50 | -8.615850e-47 |
| Msa0412190 | Msa0487490 | 0.813934 | 1.990442e-51 | -8.615850e-47 |
| Msa0412190 | Msa0504090 | 0.893514 | 5.855097e-75 | -8.615850e-47 |
| Msa0412190 | Msa0536650 | 0.800741 | 1.249946e-48 | -8.615850e-47 |
| Msa0412190 | Msa0549540 | 0.810770 | 9.771897e-51 | -8.615850e-47 |
| Msa0412190 | Msa0570680 | 0.803520 | 3.352430e-49 | -8.615850e-47 |
| Msa0412190 | Msa0576240 | 0.809875 | 1.524295e-50 | -8.615850e-47 |
| Msa0412190 | Msa0578730 | 0.817113 | 3.901625e-52 | -8.615850e-47 |
| Msa0412190 | Msa0583740 | 0.810836 | 9.454588e-51 | -8.615850e-47 |
| Msa0412190 | Msa0605250 | 0.817750 | 2.804953e-52 | -8.615850e-47 |
| Msa0412190 | Msa0607340 | -0.811605 | 6.438447e-51 | -8.615850e-47 |
| Msa0412190 | Msa0659890 | 0.810592 | 1.067681e-50 | -8.615850e-47 |
| Msa0412190 | Msa0676100 | 0.802093 | 6.607306e-49 | -8.615850e-47 |
| Msa0412190 | Msa0693730 | 0.804473 | 2.124041e-49 | -8.615850e-47 |
| Msa0412190 | Msa0705420 | 0.836012 | 1.200633e-56 | -8.615850e-47 |
| Msa0412190 | Msa0709660 | 0.818005 | 2.456662e-52 | -8.615850e-47 |
| Msa0412190 | Msa0734240 | 0.815894 | 7.317272e-52 | -8.615850e-47 |
| Msa0412190 | Msa0740210 | 0.865451 | 5.848113e-65 | -8.615850e-47 |
| Msa0412190 | Msa0746980 | 0.814342 | 1.617618e-51 | -8.615850e-47 |
| Msa0412190 | Msa0781390 | 0.848351 | 6.479771e-60 | -8.615850e-47 |
| Msa0412190 | Msa0790640 | 0.824907 | 6.259247e-54 | -8.615850e-47 |
| Msa0412190 | Msa0801360 | 0.840826 | 6.882611e-58 | -8.615850e-47 |
| Msa0412190 | Msa0818440 | 0.803686 | 3.096763e-49 | -8.615850e-47 |
| Msa0412190 | Msa0818550 | 0.815051 | 1.126962e-51 | -8.615850e-47 |
| Msa0412190 | Msa0820520 | 0.839388 | 1.632593e-57 | -8.615850e-47 |
| Msa0412190 | Msa0828570 | 0.806728 | 7.146222e-50 | -8.615850e-47 |
| Msa0412190 | Msa0839830 | 0.843169 | 1.652958e-58 | -8.615850e-47 |
| Msa0412190 | Msa0853580 | 0.804428 | 2.170934e-49 | -8.615850e-47 |
| Msa0412190 | Msa0860920 | 0.872621 | 2.762382e-67 | -8.615850e-47 |
| Msa0412190 | Msa0929750 | 0.812784 | 3.561115e-51 | -8.615850e-47 |
| Msa0412190 | Msa0936030 | 0.813883 | 2.043042e-51 | -8.615850e-47 |
| Msa0412190 | Msa0964430 | 0.817969 | 2.502423e-52 | -8.615850e-47 |
| Msa0412190 | Msa0984000 | 0.819490 | 1.129919e-52 | -8.615850e-47 |
| Msa0412190 | Msa1119250 | -0.853254 | 2.697702e-61 | -8.615850e-47 |
| Msa0412190 | Msa1119300 | -0.849509 | 3.090021e-60 | -8.615850e-47 |
| Msa0412190 | Msa1119570 | 0.858912 | 5.946520e-63 | -8.615850e-47 |
| Msa0412190 | Msa1137940 | 0.863001 | 3.397879e-64 | -8.615850e-47 |
| Msa0412190 | Msa1144730 | 0.843061 | 1.766175e-58 | -8.615850e-47 |
| Msa0412190 | Msa1158090 | 0.860346 | 2.201637e-63 | -8.615850e-47 |
| Msa0412190 | Msa1177240 | 0.804656 | 1.945713e-49 | -8.615850e-47 |
| Msa0412190 | Msa1180050 | 0.860138 | 2.544953e-63 | -8.615850e-47 |
| Msa0412190 | Msa1198720 | 0.844688 | 6.476693e-59 | -8.615850e-47 |
| Msa0412190 | Msa1212760 | 0.914087 | 2.889863e-84 | -8.615850e-47 |
| Msa0412190 | Msa1212980 | 0.881731 | 1.881446e-70 | -8.615850e-47 |
| Msa0412190 | Msa1232270 | 0.874559 | 6.142721e-68 | -8.615850e-47 |
| Msa0412190 | Msa1241820 | 0.830345 | 3.094805e-55 | -8.615850e-47 |
| Msa0412190 | Msa1252300 | 0.851594 | 8.014946e-61 | -8.615850e-47 |
| Msa0412190 | Msa1260130 | 0.862368 | 5.325918e-64 | -8.615850e-47 |
| Msa0412190 | Msa1262920 | 0.805426 | 1.342886e-49 | -8.615850e-47 |
| Msa0412190 | Msa1270770 | 0.861322 | 1.112915e-63 | -8.615850e-47 |
| Msa0412190 | Msa1281270 | 0.809839 | 1.551906e-50 | -8.615850e-47 |
| Msa0412190 | Msa1292960 | 0.820837 | 5.553389e-53 | -8.615850e-47 |
| Msa0412190 | Msa1300050 | 0.831658 | 1.473047e-55 | -8.615850e-47 |
| Msa0412190 | Msa1313050 | 0.841460 | 4.690027e-58 | -8.615850e-47 |
| Msa0412190 | Msa1317030 | 0.805006 | 1.644114e-49 | -8.615850e-47 |
| Msa0412190 | Msa1320380 | 0.831169 | 1.943906e-55 | -8.615850e-47 |
| Msa0412190 | Msa1354090 | 0.845665 | 3.524930e-59 | -8.615850e-47 |
| Msa0412190 | Msa1378470 | 0.815372 | 9.564578e-52 | -8.615850e-47 |
| Msa0412190 | Msa1391490 | 0.835947 | 1.247019e-56 | -8.615850e-47 |
| Msa0412190 | Msa1398800 | 0.836048 | 1.175732e-56 | -8.615850e-47 |
| Msa0412190 | Msa1421870 | 0.813306 | 2.735885e-51 | -8.615850e-47 |
| Msa0412190 | Msa1434660 | 0.833306 | 5.753345e-56 | -8.615850e-47 |
| Msa0412190 | Msa1439530 | 0.801327 | 9.488420e-49 | -8.615850e-47 |
| Msa0238860 | Msa0412190 | 0.821906 | 3.146872e-53 | -8.615850e-47 |
| Msa0240450 | Msa0412190 | -0.802372 | 5.787650e-49 | -8.615850e-47 |
| Msa0265580 | Msa0412190 | 0.806544 | 7.814428e-50 | -8.615850e-47 |
| Msa0276590 | Msa0412190 | 0.833799 | 4.333559e-56 | -8.615850e-47 |
| Msa0303440 | Msa0412190 | 0.803788 | 2.949373e-49 | -8.615850e-47 |
| Msa0309650 | Msa0412190 | -0.812721 | 3.675962e-51 | -8.615850e-47 |
| Msa0316610 | Msa0412190 | 0.800831 | 1.198601e-48 | -8.615850e-47 |
| Msa0318250 | Msa0412190 | 0.802876 | 4.556559e-49 | -8.615850e-47 |
| Msa0344680 | Msa0412190 | 0.843995 | 9.940322e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412190 | MtrunA17_Chr3g0103771 | 97.945 | 146 | 3 | 0 | 1 | 146 | 695 | 840 | 8.19e-98 | 299 |
| Msa0412190 | MtrunA17_Chr6g0454411 | 68.493 | 146 | 46 | 0 | 1 | 146 | 832 | 977 | 5.98e-68 | 221 |
| Msa0412190 | MtrunA17_Chr4g0043041 | 67.808 | 146 | 47 | 0 | 1 | 146 | 836 | 981 | 5.65e-66 | 216 |
| Msa0412190 | MtrunA17_Chr2g0282731 | 45.578 | 147 | 72 | 3 | 1 | 146 | 849 | 988 | 4.11e-35 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0412190 | AT3G46970.1 | 89.041 | 146 | 16 | 0 | 1 | 146 | 696 | 841 | 9.65e-90 | 278 |
| Msa0412190 | AT3G29320.1 | 71.233 | 146 | 42 | 0 | 1 | 146 | 817 | 962 | 2.25e-68 | 222 |
Find 57 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGTATGCTAAGGAAATT+TGG | 0.156164 | 3_2:+55485540 | Msa0412190:CDS |
| AAGAGGCAAAGAAGTTTATT+AGG | 0.200703 | 3_2:+55484824 | Msa0412190:CDS |
| GATTCATTGGAAGGAAATTC+TGG | 0.270874 | 3_2:+55484886 | Msa0412190:CDS |
| GTCCATTACAAATACCAATT+TGG | 0.272735 | 3_2:-55485802 | None:intergenic |
| CAACCCATTGCTTGATTCAT+TGG | 0.306445 | 3_2:+55484873 | Msa0412190:CDS |
| ATTTGCTTAGCCTTCCAAAT+TGG | 0.310648 | 3_2:+55485788 | Msa0412190:three_prime_UTR |
| ATGGAGCTAATGTGGAAATC+AGG | 0.343321 | 3_2:+55483992 | Msa0412190:CDS |
| TTGGAAGGAAATTCTGGTTA+TGG | 0.355039 | 3_2:+55484892 | Msa0412190:CDS |
| TTCCAAATTGGTATTTGTAA+TGG | 0.376585 | 3_2:+55485800 | Msa0412190:three_prime_UTR |
| TTTATTAGGAGTGGGGTGTT+TGG | 0.376904 | 3_2:+55484838 | Msa0412190:CDS |
| GCCTCTTCAAATCGAGGATC+CGG | 0.386133 | 3_2:-55484808 | None:intergenic |
| GCAAAGAAGTTTATTAGGAG+TGG | 0.386572 | 3_2:+55484829 | Msa0412190:CDS |
| ATGTCTATCTTAAGTACTGC+TGG | 0.395817 | 3_2:+55485485 | Msa0412190:CDS |
| CGTGGTGATTACTTTCTTGT+TGG | 0.397265 | 3_2:+55484916 | Msa0412190:CDS |
| CTTATTATAGGTACTTTAGA+TGG | 0.405360 | 3_2:+55483973 | Msa0412190:intron |
| TCCTGAGCATCCACGTAGCT+TGG | 0.420103 | 3_2:-55484949 | None:intergenic |
| CAAAGAAGTTTATTAGGAGT+GGG | 0.443416 | 3_2:+55484830 | Msa0412190:CDS |
| GATGTATCCAGCTGAAATTA+TGG | 0.450675 | 3_2:-55485584 | None:intergenic |
| CCTGAGCATCCACGTAGCTT+GGG | 0.460185 | 3_2:-55484948 | None:intergenic |
| CTTCCAATGAATCAAGCAAT+GGG | 0.462569 | 3_2:-55484876 | None:intergenic |
| CCATTGCTTGATTCATTGGA+AGG | 0.471435 | 3_2:+55484877 | Msa0412190:CDS |
| CCCAAGCTACGTGGATGCTC+AGG | 0.476610 | 3_2:+55484948 | Msa0412190:CDS |
| GTAGCATTTAAACTTTCTGA+TGG | 0.476727 | 3_2:-55485860 | None:intergenic |
| CCTTCCAATGAATCAAGCAA+TGG | 0.482739 | 3_2:-55484877 | None:intergenic |
| TTGTGATTTGAAGTTCAAAC+CGG | 0.490504 | 3_2:+55484789 | Msa0412190:intron |
| GAAGGAAAGAGAGGATGGAC+TGG | 0.498810 | 3_2:+55484080 | Msa0412190:CDS |
| CCGTGTACCATAATTTCAGC+TGG | 0.513087 | 3_2:+55485577 | Msa0412190:exon |
| ATCTTAAGTACTGCTGGGAG+TGG | 0.515688 | 3_2:+55485491 | Msa0412190:CDS |
| TGGAGCTAATGTGGAAATCA+GGG | 0.523433 | 3_2:+55483993 | Msa0412190:CDS |
| GTGGGAAGTTCAGCAGTGAC+AGG | 0.524513 | 3_2:+55485510 | Msa0412190:CDS |
| CAAGTCTCATTCTGTTTCAG+TGG | 0.529577 | 3_2:+55485824 | Msa0412190:three_prime_UTR |
| TTCTTTGCCTCTTCAAATCG+AGG | 0.532927 | 3_2:-55484814 | None:intergenic |
| TACTTTAGATGGAGCTAATG+TGG | 0.537773 | 3_2:+55483984 | Msa0412190:CDS |
| ATATACTTCTCATGAATGCA+AGG | 0.538334 | 3_2:-55485607 | None:intergenic |
| GGAAATTCTGGTTATGGTCG+TGG | 0.539921 | 3_2:+55484898 | Msa0412190:CDS |
| ATTACAAATACCAATTTGGA+AGG | 0.551227 | 3_2:-55485798 | None:intergenic |
| CATGGTGCAGTGACAAGAAA+AGG | 0.556413 | 3_2:+55485453 | Msa0412190:intron |
| CTGAGGAAGGAAAGAGAGGA+TGG | 0.557425 | 3_2:+55484075 | Msa0412190:CDS |
| AAGCAGATGCATTGAGAGAG+AGG | 0.557628 | 3_2:-55485705 | None:intergenic |
| GACAATTGCTCAGTATGCTA+AGG | 0.558452 | 3_2:+55485532 | Msa0412190:CDS |
| AGCAGATGCATTGAGAGAGA+GGG | 0.558561 | 3_2:-55485704 | None:intergenic |
| TGATGTACCTCGACTGAGGA+AGG | 0.561412 | 3_2:+55484062 | Msa0412190:CDS |
| AAAGAAGTTTATTAGGAGTG+GGG | 0.569398 | 3_2:+55484831 | Msa0412190:CDS |
| TGTCTATCTTAAGTACTGCT+GGG | 0.576462 | 3_2:+55485486 | Msa0412190:CDS |
| CATCCGCTGTCGCACCAAAG+AGG | 0.589453 | 3_2:-55484041 | None:intergenic |
| TTTCCTCTTTGGTGCGACAG+CGG | 0.590527 | 3_2:+55484038 | Msa0412190:CDS |
| TCTCTTTCCTTCCTCAGTCG+AGG | 0.597849 | 3_2:-55484069 | None:intergenic |
| CCAGCTGAAATTATGGTACA+CGG | 0.605531 | 3_2:-55485577 | None:intergenic |
| ACCGGATCCTCGATTTGAAG+AGG | 0.608188 | 3_2:+55484807 | Msa0412190:CDS |
| TCTTAAGTACTGCTGGGAGT+GGG | 0.611052 | 3_2:+55485492 | Msa0412190:CDS |
| GTGGAAATCAGGGAAGAGAT+CGG | 0.619019 | 3_2:+55484003 | Msa0412190:CDS |
| TATACTTCTCATGAATGCAA+GGG | 0.636811 | 3_2:-55485606 | None:intergenic |
| TTATGACTTCCCAAGCTACG+TGG | 0.654121 | 3_2:+55484939 | Msa0412190:CDS |
| TCGACTGAGGAAGGAAAGAG+AGG | 0.654363 | 3_2:+55484071 | Msa0412190:CDS |
| GGTGCAGTGACAAGAAAAGG+TGG | 0.675521 | 3_2:+55485456 | Msa0412190:intron |
| CGGATGATGTACCTCGACTG+AGG | 0.697248 | 3_2:+55484058 | Msa0412190:CDS |
| AATCAGGGAAGAGATCGGTG+AGG | 0.747097 | 3_2:+55484008 | Msa0412190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACAATGAATATATTTTGA+TGG | + | chr3_2:55484310-55484329 | Msa0412190:intron | 15.0% |
| !! | AAATATAAAAAGGAAAATGT+GGG | - | chr3_2:55484447-55484466 | None:intergenic | 15.0% |
| !! | AAAATATAAAAAGGAAAATG+TGG | - | chr3_2:55484448-55484467 | None:intergenic | 15.0% |
| !!! | CGTTTTAAAAAATTAGAAAA+TGG | - | chr3_2:55484518-55484537 | None:intergenic | 15.0% |
| !!! | TAAGTGTATATATTGTTTTT+TGG | + | chr3_2:55485421-55485440 | Msa0412190:intron | 15.0% |
| !!! | AAACAATGAATATATTTTGA+TGG | + | chr3_2:55484310-55484329 | Msa0412190:intron | 15.0% |
| !! | AAATATAAAAAGGAAAATGT+GGG | - | chr3_2:55484447-55484466 | None:intergenic | 15.0% |
| !! | AAAATATAAAAAGGAAAATG+TGG | - | chr3_2:55484448-55484467 | None:intergenic | 15.0% |
| !!! | CGTTTTAAAAAATTAGAAAA+TGG | - | chr3_2:55484518-55484537 | None:intergenic | 15.0% |
| !!! | TAAGTGTATATATTGTTTTT+TGG | + | chr3_2:55485421-55485440 | Msa0412190:intron | 15.0% |
| !!! | AAAAAAATGACATTTTTTGC+AGG | - | chr3_2:55484265-55484284 | None:intergenic | 20.0% |
| !!! | CCACTTTTAAAATTTTGTAT+CGG | - | chr3_2:55484339-55484358 | None:intergenic | 20.0% |
| !!! | CGATACAAAATTTTAAAAGT+GGG | + | chr3_2:55484337-55484356 | Msa0412190:intron | 20.0% |
| !!! | GATACAAAATTTTAAAAGTG+GGG | + | chr3_2:55484338-55484357 | Msa0412190:intron | 20.0% |
| !! | GTTGAAGTGAAAATATAAAA+AGG | - | chr3_2:55484457-55484476 | None:intergenic | 20.0% |
| !!! | AAAGAAACTGAAGTATTTTT+AGG | + | chr3_2:55484711-55484730 | Msa0412190:intron | 20.0% |
| !!! | AGTATTTTTAGGAAGTAAAT+AGG | + | chr3_2:55484722-55484741 | Msa0412190:intron | 20.0% |
| !! | CAATCATTATGCAAATATTA+GGG | - | chr3_2:55484748-55484767 | None:intergenic | 20.0% |
| !! | ACAATCATTATGCAAATATT+AGG | - | chr3_2:55484749-55484768 | None:intergenic | 20.0% |
| !! | TTACTAAAATAACGTCTAAT+AGG | - | chr3_2:55485109-55485128 | None:intergenic | 20.0% |
| !! | ATTAGATGTGATATAAAACT+TGG | - | chr3_2:55485226-55485245 | None:intergenic | 20.0% |
| !!! | ATGATTTTAAATGAACAGTT+TGG | - | chr3_2:55485281-55485300 | None:intergenic | 20.0% |
| !!! | AAACAGTTTGATTTAATTAG+TGG | - | chr3_2:55485321-55485340 | None:intergenic | 20.0% |
| !!! | ATACACTTACGATAATTTTA+TGG | - | chr3_2:55485410-55485429 | None:intergenic | 20.0% |
| !!! | AAAAAAATGACATTTTTTGC+AGG | - | chr3_2:55484265-55484284 | None:intergenic | 20.0% |
| !!! | CCACTTTTAAAATTTTGTAT+CGG | - | chr3_2:55484339-55484358 | None:intergenic | 20.0% |
| !!! | CGATACAAAATTTTAAAAGT+GGG | + | chr3_2:55484337-55484356 | Msa0412190:intron | 20.0% |
| !!! | GATACAAAATTTTAAAAGTG+GGG | + | chr3_2:55484338-55484357 | Msa0412190:intron | 20.0% |
| !! | GTTGAAGTGAAAATATAAAA+AGG | - | chr3_2:55484457-55484476 | None:intergenic | 20.0% |
| !!! | AAAGAAACTGAAGTATTTTT+AGG | + | chr3_2:55484711-55484730 | Msa0412190:intron | 20.0% |
| !!! | AGTATTTTTAGGAAGTAAAT+AGG | + | chr3_2:55484722-55484741 | Msa0412190:intron | 20.0% |
| !! | CAATCATTATGCAAATATTA+GGG | - | chr3_2:55484748-55484767 | None:intergenic | 20.0% |
| !! | ACAATCATTATGCAAATATT+AGG | - | chr3_2:55484749-55484768 | None:intergenic | 20.0% |
| !! | TTACTAAAATAACGTCTAAT+AGG | - | chr3_2:55485109-55485128 | None:intergenic | 20.0% |
| !! | ATTAGATGTGATATAAAACT+TGG | - | chr3_2:55485226-55485245 | None:intergenic | 20.0% |
| !!! | ATGATTTTAAATGAACAGTT+TGG | - | chr3_2:55485281-55485300 | None:intergenic | 20.0% |
| !!! | AAACAGTTTGATTTAATTAG+TGG | - | chr3_2:55485321-55485340 | None:intergenic | 20.0% |
| !!! | ATACACTTACGATAATTTTA+TGG | - | chr3_2:55485410-55485429 | None:intergenic | 20.0% |
| !! | CATCTAAAGTACCTATAATA+AGG | - | chr3_2:55483975-55483994 | None:intergenic | 25.0% |
| ! | CTTATTATAGGTACTTTAGA+TGG | + | chr3_2:55483973-55483992 | Msa0412190:intron | 25.0% |
| !!! | CTGTATAAAATTTTGACAAC+AGG | - | chr3_2:55484289-55484308 | None:intergenic | 25.0% |
| !! | CTGTTGTCAAAATTTTATAC+AGG | + | chr3_2:55484287-55484306 | Msa0412190:intron | 25.0% |
| !!! | CCGATACAAAATTTTAAAAG+TGG | + | chr3_2:55484336-55484355 | Msa0412190:intron | 25.0% |
| ! | TTAACCATAATAAACAGCTA+GGG | - | chr3_2:55485035-55485054 | None:intergenic | 25.0% |
| ! | TTTAACCATAATAAACAGCT+AGG | - | chr3_2:55485036-55485055 | None:intergenic | 25.0% |
| ! | TATTATGGTTAAAGTCAGTT+TGG | + | chr3_2:55485043-55485062 | Msa0412190:intron | 25.0% |
| ! | TTAGTAAAACTCTAGATGTA+TGG | + | chr3_2:55485122-55485141 | Msa0412190:intron | 25.0% |
| !!! | ATTGATTTTAACTTCCAATC+TGG | + | chr3_2:55485160-55485179 | Msa0412190:intron | 25.0% |
| ! | ATTACAAATACCAATTTGGA+AGG | - | chr3_2:55485801-55485820 | None:intergenic | 25.0% |
| ! | TTCCAAATTGGTATTTGTAA+TGG | + | chr3_2:55485800-55485819 | Msa0412190:three_prime_UTR | 25.0% |
| !! | CATCTAAAGTACCTATAATA+AGG | - | chr3_2:55483975-55483994 | None:intergenic | 25.0% |
| ! | CTTATTATAGGTACTTTAGA+TGG | + | chr3_2:55483973-55483992 | Msa0412190:intron | 25.0% |
| !!! | CTGTATAAAATTTTGACAAC+AGG | - | chr3_2:55484289-55484308 | None:intergenic | 25.0% |
| !! | CTGTTGTCAAAATTTTATAC+AGG | + | chr3_2:55484287-55484306 | Msa0412190:intron | 25.0% |
| !!! | CCGATACAAAATTTTAAAAG+TGG | + | chr3_2:55484336-55484355 | Msa0412190:intron | 25.0% |
| ! | TTAACCATAATAAACAGCTA+GGG | - | chr3_2:55485035-55485054 | None:intergenic | 25.0% |
| ! | TTTAACCATAATAAACAGCT+AGG | - | chr3_2:55485036-55485055 | None:intergenic | 25.0% |
| ! | TATTATGGTTAAAGTCAGTT+TGG | + | chr3_2:55485043-55485062 | Msa0412190:intron | 25.0% |
| ! | TTAGTAAAACTCTAGATGTA+TGG | + | chr3_2:55485122-55485141 | Msa0412190:intron | 25.0% |
| !!! | ATTGATTTTAACTTCCAATC+TGG | + | chr3_2:55485160-55485179 | Msa0412190:intron | 25.0% |
| ! | ATTACAAATACCAATTTGGA+AGG | - | chr3_2:55485801-55485820 | None:intergenic | 25.0% |
| ! | TTCCAAATTGGTATTTGTAA+TGG | + | chr3_2:55485800-55485819 | Msa0412190:three_prime_UTR | 25.0% |
| !! | ACAAAATTTTAAAAGTGGGG+AGG | + | chr3_2:55484341-55484360 | Msa0412190:intron | 30.0% |
| ! | AATAACCAAACAAGCTCTAA+GGG | + | chr3_2:55484410-55484429 | Msa0412190:intron | 30.0% |
| ! | TTGTGATTTGAAGTTCAAAC+CGG | + | chr3_2:55484789-55484808 | Msa0412190:intron | 30.0% |
| AAGAGGCAAAGAAGTTTATT+AGG | + | chr3_2:55484824-55484843 | Msa0412190:CDS | 30.0% | |
| CAAAGAAGTTTATTAGGAGT+GGG | + | chr3_2:55484830-55484849 | Msa0412190:CDS | 30.0% | |
| AAAGAAGTTTATTAGGAGTG+GGG | + | chr3_2:55484831-55484850 | Msa0412190:CDS | 30.0% | |
| AAAAAGTAGACGAAGCATAT+CGG | + | chr3_2:55484971-55484990 | Msa0412190:CDS | 30.0% | |
| AACTAAAGGAGAAAATGTGA+GGG | - | chr3_2:55485008-55485027 | None:intergenic | 30.0% | |
| AAACTAAAGGAGAAAATGTG+AGG | - | chr3_2:55485009-55485028 | None:intergenic | 30.0% | |
| AAATCAACTTCAACACTCTA+CGG | - | chr3_2:55485081-55485100 | None:intergenic | 30.0% | |
| ! | TTTTGCTTCAGAAAAGTGAT+AGG | - | chr3_2:55485361-55485380 | None:intergenic | 30.0% |
| !!! | GTTTTTTGGTATGTTTTGCA+TGG | + | chr3_2:55485435-55485454 | Msa0412190:intron | 30.0% |
| TATACTTCTCATGAATGCAA+GGG | - | chr3_2:55485609-55485628 | None:intergenic | 30.0% | |
| ATATACTTCTCATGAATGCA+AGG | - | chr3_2:55485610-55485629 | None:intergenic | 30.0% | |
| GTCCATTACAAATACCAATT+TGG | - | chr3_2:55485805-55485824 | None:intergenic | 30.0% | |
| !! | ACAAAATTTTAAAAGTGGGG+AGG | + | chr3_2:55484341-55484360 | Msa0412190:intron | 30.0% |
| ! | AATAACCAAACAAGCTCTAA+GGG | + | chr3_2:55484410-55484429 | Msa0412190:intron | 30.0% |
| ! | TTGTGATTTGAAGTTCAAAC+CGG | + | chr3_2:55484789-55484808 | Msa0412190:intron | 30.0% |
| AAGAGGCAAAGAAGTTTATT+AGG | + | chr3_2:55484824-55484843 | Msa0412190:CDS | 30.0% | |
| CAAAGAAGTTTATTAGGAGT+GGG | + | chr3_2:55484830-55484849 | Msa0412190:CDS | 30.0% | |
| AAAGAAGTTTATTAGGAGTG+GGG | + | chr3_2:55484831-55484850 | Msa0412190:CDS | 30.0% | |
| AAAAAGTAGACGAAGCATAT+CGG | + | chr3_2:55484971-55484990 | Msa0412190:CDS | 30.0% | |
| AACTAAAGGAGAAAATGTGA+GGG | - | chr3_2:55485008-55485027 | None:intergenic | 30.0% | |
| AAACTAAAGGAGAAAATGTG+AGG | - | chr3_2:55485009-55485028 | None:intergenic | 30.0% | |
| AAATCAACTTCAACACTCTA+CGG | - | chr3_2:55485081-55485100 | None:intergenic | 30.0% | |
| ! | TTTTGCTTCAGAAAAGTGAT+AGG | - | chr3_2:55485361-55485380 | None:intergenic | 30.0% |
| !!! | GTTTTTTGGTATGTTTTGCA+TGG | + | chr3_2:55485435-55485454 | Msa0412190:intron | 30.0% |
| TATACTTCTCATGAATGCAA+GGG | - | chr3_2:55485609-55485628 | None:intergenic | 30.0% | |
| ATATACTTCTCATGAATGCA+AGG | - | chr3_2:55485610-55485629 | None:intergenic | 30.0% | |
| GTCCATTACAAATACCAATT+TGG | - | chr3_2:55485805-55485824 | None:intergenic | 30.0% | |
| TACTTTAGATGGAGCTAATG+TGG | + | chr3_2:55483984-55484003 | Msa0412190:CDS | 35.0% | |
| !!! | GAGGAGAATTTTTTCCTCTT+TGG | + | chr3_2:55484027-55484046 | Msa0412190:CDS | 35.0% |
| CAATAACCAAACAAGCTCTA+AGG | + | chr3_2:55484409-55484428 | Msa0412190:intron | 35.0% | |
| GTGATAGAGAGAAGATGTAA+GGG | - | chr3_2:55484626-55484645 | None:intergenic | 35.0% | |
| TGTGATAGAGAGAAGATGTA+AGG | - | chr3_2:55484627-55484646 | None:intergenic | 35.0% | |
| GCAAAGAAGTTTATTAGGAG+TGG | + | chr3_2:55484829-55484848 | Msa0412190:CDS | 35.0% | |
| CTTCCAATGAATCAAGCAAT+GGG | - | chr3_2:55484879-55484898 | None:intergenic | 35.0% | |
| GATTCATTGGAAGGAAATTC+TGG | + | chr3_2:55484886-55484905 | Msa0412190:CDS | 35.0% | |
| ! | TTGGAAGGAAATTCTGGTTA+TGG | + | chr3_2:55484892-55484911 | Msa0412190:CDS | 35.0% |
| TTCTCCCTAGCTGTTTATTA+TGG | + | chr3_2:55485028-55485047 | Msa0412190:intron | 35.0% | |
| ACTTCTAGTCAAATCCAGAT+TGG | - | chr3_2:55485177-55485196 | None:intergenic | 35.0% | |
| !! | CAGTTTGGAAATGATTTGCT+TGG | - | chr3_2:55485266-55485285 | None:intergenic | 35.0% |
| ! | AGTGATAGGTGATGTTACTT+TGG | - | chr3_2:55485347-55485366 | None:intergenic | 35.0% |
| ! | ATGTCTATCTTAAGTACTGC+TGG | + | chr3_2:55485485-55485504 | Msa0412190:CDS | 35.0% |
| ! | TGTCTATCTTAAGTACTGCT+GGG | + | chr3_2:55485486-55485505 | Msa0412190:CDS | 35.0% |
| CTCAGTATGCTAAGGAAATT+TGG | + | chr3_2:55485540-55485559 | Msa0412190:CDS | 35.0% | |
| GATGTATCCAGCTGAAATTA+TGG | - | chr3_2:55485587-55485606 | None:intergenic | 35.0% | |
| ! | ATTTGCTTAGCCTTCCAAAT+TGG | + | chr3_2:55485788-55485807 | Msa0412190:three_prime_UTR | 35.0% |
| TACTTTAGATGGAGCTAATG+TGG | + | chr3_2:55483984-55484003 | Msa0412190:CDS | 35.0% | |
| !!! | GAGGAGAATTTTTTCCTCTT+TGG | + | chr3_2:55484027-55484046 | Msa0412190:CDS | 35.0% |
| CAATAACCAAACAAGCTCTA+AGG | + | chr3_2:55484409-55484428 | Msa0412190:intron | 35.0% | |
| GTGATAGAGAGAAGATGTAA+GGG | - | chr3_2:55484626-55484645 | None:intergenic | 35.0% | |
| TGTGATAGAGAGAAGATGTA+AGG | - | chr3_2:55484627-55484646 | None:intergenic | 35.0% | |
| GCAAAGAAGTTTATTAGGAG+TGG | + | chr3_2:55484829-55484848 | Msa0412190:CDS | 35.0% | |
| CTTCCAATGAATCAAGCAAT+GGG | - | chr3_2:55484879-55484898 | None:intergenic | 35.0% | |
| GATTCATTGGAAGGAAATTC+TGG | + | chr3_2:55484886-55484905 | Msa0412190:CDS | 35.0% | |
| ! | TTGGAAGGAAATTCTGGTTA+TGG | + | chr3_2:55484892-55484911 | Msa0412190:CDS | 35.0% |
| TTCTCCCTAGCTGTTTATTA+TGG | + | chr3_2:55485028-55485047 | Msa0412190:intron | 35.0% | |
| ACTTCTAGTCAAATCCAGAT+TGG | - | chr3_2:55485177-55485196 | None:intergenic | 35.0% | |
| !! | CAGTTTGGAAATGATTTGCT+TGG | - | chr3_2:55485266-55485285 | None:intergenic | 35.0% |
| ! | AGTGATAGGTGATGTTACTT+TGG | - | chr3_2:55485347-55485366 | None:intergenic | 35.0% |
| ! | ATGTCTATCTTAAGTACTGC+TGG | + | chr3_2:55485485-55485504 | Msa0412190:CDS | 35.0% |
| ! | TGTCTATCTTAAGTACTGCT+GGG | + | chr3_2:55485486-55485505 | Msa0412190:CDS | 35.0% |
| CTCAGTATGCTAAGGAAATT+TGG | + | chr3_2:55485540-55485559 | Msa0412190:CDS | 35.0% | |
| GATGTATCCAGCTGAAATTA+TGG | - | chr3_2:55485587-55485606 | None:intergenic | 35.0% | |
| ! | ATTTGCTTAGCCTTCCAAAT+TGG | + | chr3_2:55485788-55485807 | Msa0412190:three_prime_UTR | 35.0% |
| ATGGAGCTAATGTGGAAATC+AGG | + | chr3_2:55483992-55484011 | Msa0412190:CDS | 40.0% | |
| TGGAGCTAATGTGGAAATCA+GGG | + | chr3_2:55483993-55484012 | Msa0412190:CDS | 40.0% | |
| ATCCTGAAGTTCAAGGAACT+AGG | - | chr3_2:55484234-55484253 | None:intergenic | 40.0% | |
| CAAACAGATCCTGAAGTTCA+AGG | - | chr3_2:55484241-55484260 | None:intergenic | 40.0% | |
| CTTGAACTTCAGGATCTGTT+TGG | + | chr3_2:55484239-55484258 | Msa0412190:intron | 40.0% | |
| AGAAGATGTAAGGGAAGCTA+GGG | - | chr3_2:55484617-55484636 | None:intergenic | 40.0% | |
| TTCTTTGCCTCTTCAAATCG+AGG | - | chr3_2:55484817-55484836 | None:intergenic | 40.0% | |
| ! | TTTATTAGGAGTGGGGTGTT+TGG | + | chr3_2:55484838-55484857 | Msa0412190:CDS | 40.0% |
| CAACCCATTGCTTGATTCAT+TGG | + | chr3_2:55484873-55484892 | Msa0412190:CDS | 40.0% | |
| CCTTCCAATGAATCAAGCAA+TGG | - | chr3_2:55484880-55484899 | None:intergenic | 40.0% | |
| CCATTGCTTGATTCATTGGA+AGG | + | chr3_2:55484877-55484896 | Msa0412190:CDS | 40.0% | |
| CGTGGTGATTACTTTCTTGT+TGG | + | chr3_2:55484916-55484935 | Msa0412190:CDS | 40.0% | |
| ACAGCTAGGGAGAAAACTAA+AGG | - | chr3_2:55485022-55485041 | None:intergenic | 40.0% | |
| GACAATTGCTCAGTATGCTA+AGG | + | chr3_2:55485532-55485551 | Msa0412190:CDS | 40.0% | |
| CCAGCTGAAATTATGGTACA+CGG | - | chr3_2:55485580-55485599 | None:intergenic | 40.0% | |
| CAAGTCTCATTCTGTTTCAG+TGG | + | chr3_2:55485824-55485843 | Msa0412190:three_prime_UTR | 40.0% | |
| ATGGAGCTAATGTGGAAATC+AGG | + | chr3_2:55483992-55484011 | Msa0412190:CDS | 40.0% | |
| TGGAGCTAATGTGGAAATCA+GGG | + | chr3_2:55483993-55484012 | Msa0412190:CDS | 40.0% | |
| ATCCTGAAGTTCAAGGAACT+AGG | - | chr3_2:55484234-55484253 | None:intergenic | 40.0% | |
| CAAACAGATCCTGAAGTTCA+AGG | - | chr3_2:55484241-55484260 | None:intergenic | 40.0% | |
| CTTGAACTTCAGGATCTGTT+TGG | + | chr3_2:55484239-55484258 | Msa0412190:intron | 40.0% | |
| AGAAGATGTAAGGGAAGCTA+GGG | - | chr3_2:55484617-55484636 | None:intergenic | 40.0% | |
| TTCTTTGCCTCTTCAAATCG+AGG | - | chr3_2:55484817-55484836 | None:intergenic | 40.0% | |
| ! | TTTATTAGGAGTGGGGTGTT+TGG | + | chr3_2:55484838-55484857 | Msa0412190:CDS | 40.0% |
| CAACCCATTGCTTGATTCAT+TGG | + | chr3_2:55484873-55484892 | Msa0412190:CDS | 40.0% | |
| CCTTCCAATGAATCAAGCAA+TGG | - | chr3_2:55484880-55484899 | None:intergenic | 40.0% | |
| CCATTGCTTGATTCATTGGA+AGG | + | chr3_2:55484877-55484896 | Msa0412190:CDS | 40.0% | |
| CGTGGTGATTACTTTCTTGT+TGG | + | chr3_2:55484916-55484935 | Msa0412190:CDS | 40.0% | |
| ACAGCTAGGGAGAAAACTAA+AGG | - | chr3_2:55485022-55485041 | None:intergenic | 40.0% | |
| GACAATTGCTCAGTATGCTA+AGG | + | chr3_2:55485532-55485551 | Msa0412190:CDS | 40.0% | |
| CCAGCTGAAATTATGGTACA+CGG | - | chr3_2:55485580-55485599 | None:intergenic | 40.0% | |
| CAAGTCTCATTCTGTTTCAG+TGG | + | chr3_2:55485824-55485843 | Msa0412190:three_prime_UTR | 40.0% | |
| GTGGAAATCAGGGAAGAGAT+CGG | + | chr3_2:55484003-55484022 | Msa0412190:CDS | 45.0% | |
| CACCTAGTTCCTTGAACTTC+AGG | + | chr3_2:55484229-55484248 | Msa0412190:intron | 45.0% | |
| ! | ACTGACCCTTAGAGCTTGTT+TGG | - | chr3_2:55484418-55484437 | None:intergenic | 45.0% |
| GAGAAGATGTAAGGGAAGCT+AGG | - | chr3_2:55484618-55484637 | None:intergenic | 45.0% | |
| ! | GGAAATTCTGGTTATGGTCG+TGG | + | chr3_2:55484898-55484917 | Msa0412190:CDS | 45.0% |
| TTATGACTTCCCAAGCTACG+TGG | + | chr3_2:55484939-55484958 | Msa0412190:CDS | 45.0% | |
| CATGGTGCAGTGACAAGAAA+AGG | + | chr3_2:55485453-55485472 | Msa0412190:intron | 45.0% | |
| ! | ATCTTAAGTACTGCTGGGAG+TGG | + | chr3_2:55485491-55485510 | Msa0412190:CDS | 45.0% |
| ! | TCTTAAGTACTGCTGGGAGT+GGG | + | chr3_2:55485492-55485511 | Msa0412190:CDS | 45.0% |
| CCGTGTACCATAATTTCAGC+TGG | + | chr3_2:55485577-55485596 | Msa0412190:exon | 45.0% | |
| AGCAGATGCATTGAGAGAGA+GGG | - | chr3_2:55485707-55485726 | None:intergenic | 45.0% | |
| AAGCAGATGCATTGAGAGAG+AGG | - | chr3_2:55485708-55485727 | None:intergenic | 45.0% | |
| GTGGAAATCAGGGAAGAGAT+CGG | + | chr3_2:55484003-55484022 | Msa0412190:CDS | 45.0% | |
| CACCTAGTTCCTTGAACTTC+AGG | + | chr3_2:55484229-55484248 | Msa0412190:intron | 45.0% | |
| ! | ACTGACCCTTAGAGCTTGTT+TGG | - | chr3_2:55484418-55484437 | None:intergenic | 45.0% |
| GAGAAGATGTAAGGGAAGCT+AGG | - | chr3_2:55484618-55484637 | None:intergenic | 45.0% | |
| ! | GGAAATTCTGGTTATGGTCG+TGG | + | chr3_2:55484898-55484917 | Msa0412190:CDS | 45.0% |
| TTATGACTTCCCAAGCTACG+TGG | + | chr3_2:55484939-55484958 | Msa0412190:CDS | 45.0% | |
| CATGGTGCAGTGACAAGAAA+AGG | + | chr3_2:55485453-55485472 | Msa0412190:intron | 45.0% | |
| ! | ATCTTAAGTACTGCTGGGAG+TGG | + | chr3_2:55485491-55485510 | Msa0412190:CDS | 45.0% |
| ! | TCTTAAGTACTGCTGGGAGT+GGG | + | chr3_2:55485492-55485511 | Msa0412190:CDS | 45.0% |
| CCGTGTACCATAATTTCAGC+TGG | + | chr3_2:55485577-55485596 | Msa0412190:exon | 45.0% | |
| AGCAGATGCATTGAGAGAGA+GGG | - | chr3_2:55485707-55485726 | None:intergenic | 45.0% | |
| AAGCAGATGCATTGAGAGAG+AGG | - | chr3_2:55485708-55485727 | None:intergenic | 45.0% | |
| !!! | TTTTTAATTAAAAAGTATTA+TGG | - | chr3_2:55484372-55484391 | None:intergenic | 5.0% |
| !!! | TTTTTAATTAAAAAGTATTA+TGG | - | chr3_2:55484372-55484391 | None:intergenic | 5.0% |
| AATCAGGGAAGAGATCGGTG+AGG | + | chr3_2:55484008-55484027 | Msa0412190:CDS | 50.0% | |
| ! | TTTCCTCTTTGGTGCGACAG+CGG | + | chr3_2:55484038-55484057 | Msa0412190:CDS | 50.0% |
| TGATGTACCTCGACTGAGGA+AGG | + | chr3_2:55484062-55484081 | Msa0412190:CDS | 50.0% | |
| TCTCTTTCCTTCCTCAGTCG+AGG | - | chr3_2:55484072-55484091 | None:intergenic | 50.0% | |
| TCGACTGAGGAAGGAAAGAG+AGG | + | chr3_2:55484071-55484090 | Msa0412190:CDS | 50.0% | |
| CTGAGGAAGGAAAGAGAGGA+TGG | + | chr3_2:55484075-55484094 | Msa0412190:CDS | 50.0% | |
| GAAGGAAAGAGAGGATGGAC+TGG | + | chr3_2:55484080-55484099 | Msa0412190:CDS | 50.0% | |
| ! | ACCGGATCCTCGATTTGAAG+AGG | + | chr3_2:55484807-55484826 | Msa0412190:CDS | 50.0% |
| GCCTCTTCAAATCGAGGATC+CGG | - | chr3_2:55484811-55484830 | None:intergenic | 50.0% | |
| GGTGCAGTGACAAGAAAAGG+TGG | + | chr3_2:55485456-55485475 | Msa0412190:intron | 50.0% | |
| AATCAGGGAAGAGATCGGTG+AGG | + | chr3_2:55484008-55484027 | Msa0412190:CDS | 50.0% | |
| ! | TTTCCTCTTTGGTGCGACAG+CGG | + | chr3_2:55484038-55484057 | Msa0412190:CDS | 50.0% |
| TGATGTACCTCGACTGAGGA+AGG | + | chr3_2:55484062-55484081 | Msa0412190:CDS | 50.0% | |
| TCTCTTTCCTTCCTCAGTCG+AGG | - | chr3_2:55484072-55484091 | None:intergenic | 50.0% | |
| TCGACTGAGGAAGGAAAGAG+AGG | + | chr3_2:55484071-55484090 | Msa0412190:CDS | 50.0% | |
| CTGAGGAAGGAAAGAGAGGA+TGG | + | chr3_2:55484075-55484094 | Msa0412190:CDS | 50.0% | |
| GAAGGAAAGAGAGGATGGAC+TGG | + | chr3_2:55484080-55484099 | Msa0412190:CDS | 50.0% | |
| ! | ACCGGATCCTCGATTTGAAG+AGG | + | chr3_2:55484807-55484826 | Msa0412190:CDS | 50.0% |
| GCCTCTTCAAATCGAGGATC+CGG | - | chr3_2:55484811-55484830 | None:intergenic | 50.0% | |
| GGTGCAGTGACAAGAAAAGG+TGG | + | chr3_2:55485456-55485475 | Msa0412190:intron | 50.0% | |
| CGGATGATGTACCTCGACTG+AGG | + | chr3_2:55484058-55484077 | Msa0412190:CDS | 55.0% | |
| CCTGAGCATCCACGTAGCTT+GGG | - | chr3_2:55484951-55484970 | None:intergenic | 55.0% | |
| TCCTGAGCATCCACGTAGCT+TGG | - | chr3_2:55484952-55484971 | None:intergenic | 55.0% | |
| GTGGGAAGTTCAGCAGTGAC+AGG | + | chr3_2:55485510-55485529 | Msa0412190:CDS | 55.0% | |
| CGGATGATGTACCTCGACTG+AGG | + | chr3_2:55484058-55484077 | Msa0412190:CDS | 55.0% | |
| CCTGAGCATCCACGTAGCTT+GGG | - | chr3_2:55484951-55484970 | None:intergenic | 55.0% | |
| TCCTGAGCATCCACGTAGCT+TGG | - | chr3_2:55484952-55484971 | None:intergenic | 55.0% | |
| GTGGGAAGTTCAGCAGTGAC+AGG | + | chr3_2:55485510-55485529 | Msa0412190:CDS | 55.0% | |
| CATCCGCTGTCGCACCAAAG+AGG | - | chr3_2:55484044-55484063 | None:intergenic | 60.0% | |
| CCCAAGCTACGTGGATGCTC+AGG | + | chr3_2:55484948-55484967 | Msa0412190:CDS | 60.0% | |
| CATCCGCTGTCGCACCAAAG+AGG | - | chr3_2:55484044-55484063 | None:intergenic | 60.0% | |
| CCCAAGCTACGTGGATGCTC+AGG | + | chr3_2:55484948-55484967 | Msa0412190:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 55483965 | 55485877 | 55483965 | ID=Msa0412190;Name=Msa0412190 |
| chr3_2 | mRNA | 55483965 | 55485877 | 55483965 | ID=Msa0412190-mRNA-1;Parent=Msa0412190;Name=Msa0412190-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.66|0.5|1|0.66|0.5|4|288|146 |
| chr3_2 | exon | 55483965 | 55483968 | 55483965 | ID=Msa0412190-mRNA-1:exon:11245;Parent=Msa0412190-mRNA-1 |
| chr3_2 | exon | 55483983 | 55484101 | 55483983 | ID=Msa0412190-mRNA-1:exon:11246;Parent=Msa0412190-mRNA-1 |
| chr3_2 | exon | 55484802 | 55484992 | 55484802 | ID=Msa0412190-mRNA-1:exon:11247;Parent=Msa0412190-mRNA-1 |
| chr3_2 | exon | 55485463 | 55485877 | 55485463 | ID=Msa0412190-mRNA-1:exon:11248;Parent=Msa0412190-mRNA-1 |
| chr3_2 | CDS | 55483965 | 55483968 | 55483965 | ID=Msa0412190-mRNA-1:cds;Parent=Msa0412190-mRNA-1 |
| chr3_2 | CDS | 55483983 | 55484101 | 55483983 | ID=Msa0412190-mRNA-1:cds;Parent=Msa0412190-mRNA-1 |
| chr3_2 | CDS | 55484802 | 55484992 | 55484802 | ID=Msa0412190-mRNA-1:cds;Parent=Msa0412190-mRNA-1 |
| chr3_2 | CDS | 55485463 | 55485589 | 55485463 | ID=Msa0412190-mRNA-1:cds;Parent=Msa0412190-mRNA-1 |
| chr3_2 | three_prime_UTR | 55485590 | 55485877 | 55485590 | ID=Msa0412190-mRNA-1:three_prime_utr;Parent=Msa0412190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
