AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0213080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0213080 MtrunA17_Chr2g0312681 96.804 219 7 0 110 328 1 219 3.17e-159 443
Msa0213080 MtrunA17_Chr2g0312681 96.610 59 2 0 39 97 47 105 9.21e-35 126
Msa0213080 MtrunA17_Chr2g0312691 84.932 219 33 0 110 328 1 219 3.17e-132 375
Msa0213080 MtrunA17_Chr2g0312691 91.525 59 5 0 39 97 47 105 1.21e-32 120
Msa0213080 MtrunA17_Chr2g0312711 82.648 219 37 1 110 328 1 218 4.33e-129 367
Msa0213080 MtrunA17_Chr2g0312711 90.476 63 6 0 39 101 47 109 9.13e-34 123
Msa0213080 MtrunA17_Chr2g0312751 66.667 219 73 0 110 328 1 219 3.88e-111 322
Msa0213080 MtrunA17_Chr2g0312751 77.966 59 13 0 39 97 47 105 5.69e-28 108
Msa0213080 MtrunA17_Chr2g0312771 66.210 219 74 0 110 328 1 219 5.50e-111 321
Msa0213080 MtrunA17_Chr2g0312771 77.966 59 13 0 39 97 47 105 5.34e-28 108
Msa0213080 MtrunA17_Chr2g0312781 64.384 219 78 0 106 324 14 232 1.75e-108 315
Msa0213080 MtrunA17_Chr2g0312781 79.661 59 12 0 39 97 64 122 1.95e-28 110
Msa0213080 MtrunA17_Chr8g0357211 64.840 219 77 0 110 328 1 219 9.74e-102 298
Msa0213080 MtrunA17_Chr8g0357211 71.186 59 17 0 39 97 47 105 5.28e-24 97.8
Msa0213080 MtrunA17_Chr8g0357241 64.384 219 78 0 110 328 1 219 2.81e-101 296
Msa0213080 MtrunA17_Chr8g0357241 72.881 59 16 0 39 97 47 105 1.67e-24 99.4
Msa0213080 MtrunA17_Chr2g0312731 60.731 219 86 0 110 328 1 219 1.35e-100 295
Msa0213080 MtrunA17_Chr2g0312731 77.966 59 13 0 39 97 47 105 3.05e-28 109
Msa0213080 MtrunA17_Chr2g0312811 59.729 221 87 1 110 328 1 221 1.08e-96 285
Msa0213080 MtrunA17_Chr2g0312811 72.881 59 16 0 39 97 49 107 3.23e-25 101
Msa0213080 MtrunA17_Chr2g0312791 60.000 220 86 2 110 327 1 220 2.86e-94 279
Msa0213080 MtrunA17_Chr2g0312791 74.576 59 15 0 39 97 47 105 3.91e-27 106
Msa0213080 MtrunA17_Chr3g0107731 58.605 215 89 0 114 328 10 224 6.16e-94 278
Msa0213080 MtrunA17_Chr3g0107731 67.241 58 19 0 39 96 52 109 4.59e-22 92.8
Msa0213080 MtrunA17_Chr3g0107741 56.604 212 92 0 112 323 8 219 1.20e-89 267
Msa0213080 MtrunA17_Chr3g0107741 65.517 58 20 0 39 96 52 109 4.29e-21 90.1
Msa0213080 MtrunA17_Chr2g0312721 53.589 209 97 0 110 318 1 209 3.84e-80 243
Msa0213080 MtrunA17_Chr2g0312721 74.576 59 15 0 39 97 47 105 3.18e-26 103
Msa0213080 MtrunA17_Chr4g0069471 57.500 200 82 2 93 291 5 202 1.07e-76 233
Msa0213080 MtrunA17_Chr4g0069471 57.534 73 31 0 25 97 55 127 2.48e-25 100
Msa0213080 MtrunA17_Chr5g0433801 49.772 219 108 2 111 328 4 221 9.72e-73 224
Msa0213080 MtrunA17_Chr5g0433801 53.448 58 26 1 40 97 51 107 3.22e-14 70.9
Msa0213080 MtrunA17_Chr5g0417011 36.323 223 132 3 111 326 5 224 1.49e-48 162
Msa0213080 MtrunA17_Chr5g0417011 48.649 74 37 1 40 113 51 123 1.57e-21 91.3
Msa0213080 MtrunA17_Chr5g0415411 39.381 226 128 4 109 325 1 226 1.07e-46 157
Msa0213080 MtrunA17_Chr5g0415411 64.706 68 20 2 32 97 43 108 7.94e-20 86.7
Msa0213080 MtrunA17_Chr1g0196661 40.952 210 119 3 113 318 3 211 7.88e-43 147
Msa0213080 MtrunA17_Chr1g0196661 64.912 57 19 1 40 96 47 102 3.89e-20 87.4
Msa0213080 MtrunA17_Chr8g0379581 39.130 207 121 4 111 314 3 207 1.78e-42 146
Msa0213080 MtrunA17_Chr8g0379581 54.237 59 26 1 39 97 48 105 9.92e-17 78.2
Msa0213080 MtrunA17_Chr2g0313561 90.141 71 7 0 156 226 1 71 1.30e-41 139
Msa0213080 MtrunA17_Chr2g0313561 68.539 89 10 1 39 127 1 71 1.04e-34 121
Msa0213080 MtrunA17_Chr4g0008781 38.028 213 127 4 108 317 3 213 1.52e-41 144
Msa0213080 MtrunA17_Chr4g0008781 51.724 58 27 1 40 97 52 108 1.04e-13 69.3
Msa0213080 MtrunA17_Chr4g0008791 40.094 212 122 4 112 320 6 215 7.60e-41 142
Msa0213080 MtrunA17_Chr4g0008791 50.769 65 29 2 40 102 51 114 1.44e-15 74.7
Msa0213080 MtrunA17_Chr8g0379561 38.571 210 123 5 109 314 1 208 9.92e-41 142
Msa0213080 MtrunA17_Chr8g0379561 38.938 113 49 3 39 149 49 143 4.94e-17 79.0
Msa0213080 MtrunA17_Chr3g0132581 37.963 216 131 3 112 325 4 218 1.47e-39 139
Msa0213080 MtrunA17_Chr3g0132581 52.941 68 29 2 32 99 43 107 5.67e-18 81.3
Msa0213080 MtrunA17_Chr4g0029341 37.900 219 125 5 110 321 1 215 9.67e-39 136
Msa0213080 MtrunA17_Chr4g0029341 62.500 56 20 1 40 95 48 102 8.67e-19 83.6
Msa0213080 MtrunA17_Chr7g0240681 36.321 212 123 5 113 317 7 213 4.13e-38 135
Msa0213080 MtrunA17_Chr7g0240681 45.714 70 37 1 40 109 51 119 9.26e-15 72.4
Msa0213080 MtrunA17_Chr1g0196691 38.222 225 130 6 109 326 24 246 4.15e-38 135
Msa0213080 MtrunA17_Chr1g0196691 67.857 56 17 1 40 95 72 126 1.25e-19 86.7
Msa0213080 MtrunA17_Chr6g0483141 37.441 211 123 6 112 317 2 208 7.47e-38 134
Msa0213080 MtrunA17_Chr6g0483141 52.459 61 28 1 40 100 47 106 3.07e-16 76.6
Msa0213080 MtrunA17_Chr7g0240641 37.681 207 124 4 114 317 8 212 1.11e-37 134
Msa0213080 MtrunA17_Chr7g0240641 47.297 74 38 1 40 113 51 123 2.48e-16 77.0
Msa0213080 MtrunA17_Chr1g0196721 41.089 202 114 3 120 317 9 209 1.43e-37 134
Msa0213080 MtrunA17_Chr1g0196721 66.667 57 18 1 40 96 46 101 2.18e-19 85.5
Msa0213080 MtrunA17_Chr7g0240611 37.981 208 118 6 113 315 7 208 1.65e-37 133
Msa0213080 MtrunA17_Chr7g0240611 44.118 68 37 1 40 107 51 117 1.32e-14 72.0
Msa0213080 MtrunA17_Chr8g0363751 35.849 212 127 3 112 314 4 215 4.58e-37 132
Msa0213080 MtrunA17_Chr8g0363751 44.681 94 45 2 4 97 22 108 8.44e-17 78.6
Msa0213080 MtrunA17_Chr7g0240561 37.500 208 125 4 113 317 7 212 2.61e-36 130
Msa0213080 MtrunA17_Chr7g0240561 45.946 74 39 1 40 113 51 123 2.07e-15 74.3
Msa0213080 MtrunA17_Chr7g0240631 35.266 207 129 4 114 317 8 212 4.49e-36 130
Msa0213080 MtrunA17_Chr7g0240631 45.946 74 39 1 40 113 51 123 2.34e-16 77.0
Msa0213080 MtrunA17_Chr1g0196711 39.713 209 121 4 113 317 3 210 8.03e-36 129
Msa0213080 MtrunA17_Chr1g0196711 62.500 56 20 1 40 95 47 101 7.35e-17 78.6
Msa0213080 MtrunA17_Chr7g0240691 35.885 209 128 4 113 317 37 243 2.28e-35 129
Msa0213080 MtrunA17_Chr7g0240691 41.860 86 48 2 24 109 66 149 2.35e-15 74.7
Msa0213080 MtrunA17_Chr7g0240671 35.545 211 127 5 110 317 1 205 3.75e-35 127
Msa0213080 MtrunA17_Chr7g0240671 50.000 58 28 1 40 97 48 104 1.53e-13 68.9
Msa0213080 MtrunA17_Chr1g0196771 35.945 217 133 4 113 325 3 217 4.33e-35 127
Msa0213080 MtrunA17_Chr1g0196771 35.417 96 61 1 40 135 47 141 4.44e-14 70.5
Msa0213080 MtrunA17_Chr7g0240511 37.500 208 120 5 113 317 7 207 4.39e-34 124
Msa0213080 MtrunA17_Chr7g0240511 55.172 58 25 1 40 97 51 107 8.49e-16 75.1
Msa0213080 MtrunA17_Chr7g0240531 36.538 208 127 4 113 317 7 212 7.46e-33 121
Msa0213080 MtrunA17_Chr7g0240531 51.724 58 27 1 40 97 51 107 2.14e-13 68.6
Msa0213080 MtrunA17_Chr7g0240541 36.058 208 128 4 113 317 7 212 2.15e-32 120
Msa0213080 MtrunA17_Chr7g0240541 44.595 74 40 1 40 113 51 123 2.42e-14 71.2
Msa0213080 MtrunA17_Chr7g0240651 35.577 208 125 5 113 317 7 208 2.54e-32 120
Msa0213080 MtrunA17_Chr7g0240651 48.276 58 29 1 40 97 51 107 1.25e-13 69.3
Msa0213080 MtrunA17_Chr7g0240581 36.634 202 123 4 114 312 8 207 1.02e-31 118
Msa0213080 MtrunA17_Chr7g0240581 47.297 74 38 1 40 113 51 123 5.76e-16 75.9
Msa0213080 MtrunA17_Chr7g0240661 35.545 211 127 5 110 317 4 208 1.23e-31 118
Msa0213080 MtrunA17_Chr7g0240661 50.000 60 29 1 40 99 51 109 6.49e-14 70.1
Msa0213080 MtrunA17_Chr7g0240551 36.058 208 128 4 113 317 7 212 2.96e-31 117
Msa0213080 MtrunA17_Chr7g0240551 44.595 74 40 1 40 113 51 123 4.26e-14 70.5
Msa0213080 MtrunA17_Chr1g0212301 34.135 208 129 4 113 314 3 208 3.25e-31 117
Msa0213080 MtrunA17_Chr1g0212301 50.000 62 28 2 34 95 43 101 1.75e-13 68.9
Msa0213080 MtrunA17_Chr8g0391631 39.375 160 90 3 108 260 16 175 1.09e-30 114
Msa0213080 MtrunA17_Chr8g0391631 45.745 94 44 2 4 97 38 124 1.42e-18 82.0
Msa0213080 MtrunA17_Chr7g0240521 37.500 208 122 5 108 309 6 211 7.08e-29 111
Msa0213080 MtrunA17_Chr7g0240521 51.724 58 27 1 40 97 58 114 6.26e-14 70.1
Msa0213080 MtrunA17_Chr2g0313551 77.273 44 4 1 284 327 1 38 7.72e-16 72.0
Msa0213080 MtrunA17_Chr5g0440621 96.552 29 1 0 10 38 21 49 1.23e-11 63.5
Msa0213080 MtrunA17_Chr5g0415421 44.595 74 39 1 137 208 11 84 1.98e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0213080 AT1G17180.1 62.557 219 82 0 110 328 1 219 1.89e-103 303
Msa0213080 AT1G17180.1 60.606 66 26 0 39 104 47 112 8.91e-23 95.1
Msa0213080 AT1G78380.1 65.421 214 74 0 110 323 1 214 3.11e-103 302
Msa0213080 AT1G78380.1 72.881 59 16 0 39 97 47 105 8.62e-23 95.1
Msa0213080 AT1G78370.1 62.150 214 81 0 110 323 1 214 8.47e-97 285
Msa0213080 AT1G78370.1 67.188 64 19 1 34 97 44 105 9.49e-24 97.4
Msa0213080 AT1G78360.1 61.364 220 84 1 110 328 1 220 6.19e-96 283
Msa0213080 AT1G78360.1 71.186 59 17 0 39 97 48 106 2.66e-23 96.3
Msa0213080 AT1G17170.1 60.274 219 86 1 110 328 1 218 6.52e-96 283
Msa0213080 AT1G17170.1 56.000 75 32 1 39 113 47 120 2.62e-23 96.3
Msa0213080 AT1G78340.1 59.535 215 87 0 110 324 1 215 1.61e-93 277
Msa0213080 AT1G78340.1 72.881 59 16 0 39 97 47 105 8.66e-26 102
Msa0213080 AT1G78320.1 59.091 220 89 1 110 328 1 220 3.76e-92 274
Msa0213080 AT1G78320.1 74.576 59 15 0 39 97 47 105 1.61e-24 99.8
Msa0213080 AT1G17190.1 57.339 218 92 1 110 326 1 218 4.93e-88 263
Msa0213080 AT1G17190.1 66.102 59 20 0 39 97 48 106 7.79e-23 95.1
Msa0213080 AT1G53680.1 53.881 219 99 2 112 328 6 224 4.05e-87 261
Msa0213080 AT1G53680.1 68.421 57 18 0 40 96 51 107 2.08e-21 91.3
Msa0213080 AT3G43800.1 51.389 216 101 3 113 324 5 220 1.17e-75 232
Msa0213080 AT3G43800.1 61.765 68 22 2 32 97 44 109 1.19e-20 89.4
Msa0213080 AT1G78320.2 51.818 220 78 2 110 328 1 193 6.97e-74 226
Msa0213080 AT1G10360.1 41.743 218 118 5 110 318 1 218 9.68e-49 163
Msa0213080 AT1G10360.1 44.898 98 48 3 40 136 49 141 9.30e-18 81.3
Msa0213080 AT3G09270.1 41.667 216 120 3 114 326 7 219 1.96e-47 159
Msa0213080 AT3G09270.1 58.065 62 26 0 40 101 51 112 4.13e-20 87.8
Msa0213080 AT1G59700.1 41.284 218 113 5 113 318 6 220 5.81e-45 154
Msa0213080 AT1G59700.1 62.712 59 21 1 40 97 51 109 1.77e-18 83.6
Msa0213080 AT1G59670.1 44.037 218 107 5 113 318 6 220 5.09e-44 151
Msa0213080 AT1G59670.1 59.322 59 23 1 40 97 51 109 4.73e-16 76.6
Msa0213080 AT2G29420.1 39.901 203 119 2 111 311 7 208 4.90e-43 148
Msa0213080 AT2G29420.1 46.154 78 40 2 24 101 38 113 2.26e-17 80.1
Msa0213080 AT1G10370.1 38.839 224 123 4 109 321 1 221 7.67e-43 148
Msa0213080 AT1G10370.1 57.627 59 24 1 40 97 49 107 2.27e-16 77.4
Msa0213080 AT1G74590.1 41.026 195 109 4 112 300 6 200 1.25e-41 145
Msa0213080 AT1G74590.1 37.500 112 58 3 39 147 50 152 4.33e-20 87.8
Msa0213080 AT1G27130.1 36.986 219 123 4 112 318 5 220 2.15e-41 144
Msa0213080 AT1G27130.1 56.897 58 25 0 40 97 52 109 4.77e-16 76.6
Msa0213080 AT2G29490.1 37.209 215 131 2 114 325 8 221 5.25e-40 140
Msa0213080 AT2G29490.1 46.269 67 34 2 39 105 50 114 5.52e-15 73.6
Msa0213080 AT1G27140.1 40.000 205 113 5 124 318 17 221 1.40e-39 140
Msa0213080 AT1G27140.1 62.069 58 22 0 40 97 53 110 9.04e-18 81.6
Msa0213080 AT2G29470.1 37.559 213 126 5 114 321 8 218 2.06e-39 139
Msa0213080 AT2G29470.1 45.763 59 31 1 39 97 51 108 3.20e-14 71.2
Msa0213080 AT2G29480.1 40.976 205 113 6 114 313 8 209 6.69e-39 137
Msa0213080 AT2G29480.1 47.458 59 30 1 39 97 50 107 5.40e-15 73.6
Msa0213080 AT2G29440.1 40.191 209 111 6 113 313 6 208 6.90e-38 135
Msa0213080 AT2G29440.1 43.421 76 41 2 24 99 35 108 7.18e-14 70.5
Msa0213080 AT2G29460.1 39.130 207 118 6 112 313 6 209 9.84e-38 134
Msa0213080 AT2G29460.1 42.373 59 33 1 39 97 50 107 1.91e-12 66.2
Msa0213080 AT2G29450.1 45.455 165 79 4 112 269 5 165 1.13e-37 134
Msa0213080 AT2G29450.1 52.542 59 27 1 39 97 49 106 8.11e-16 75.9
Msa0213080 AT1G69920.1 34.836 244 139 5 92 318 8 248 2.55e-37 134
Msa0213080 AT1G69920.1 60.345 58 23 0 40 97 80 137 1.91e-16 78.2
Msa0213080 AT1G69930.1 35.849 212 129 3 114 318 13 224 1.71e-36 131
Msa0213080 AT1G69930.1 52.632 57 27 0 40 96 56 112 1.89e-13 69.3
Msa0213080 AT5G62480.1 33.333 225 140 3 110 324 5 229 2.20e-36 131
Msa0213080 AT5G62480.1 55.556 54 24 0 40 93 52 105 2.80e-17 80.1
Msa0213080 AT5G62480.2 27.556 225 127 4 110 324 5 203 2.73e-20 88.2
Msa0213080 AT5G62480.3 27.556 225 126 4 110 324 5 202 3.08e-20 87.8

Find 56 sgRNAs with CRISPR-Local

Find 501 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCATGTGTAAATTGAATT+AGG 0.126393 2_1:-55628280 Msa0213070:intron
AGAGAGCTCAAGCTAGATTT+TGG 0.158333 2_1:+55629579 Msa0213080:CDS
AGAGAGCTCAAGCTAGATTT+TGG 0.158333 2_1:+55634675 Msa0213080:CDS
CACAAATGGATTTACCATTA+TGG 0.237873 2_1:-55629481 None:intergenic
ACATTTGGGTTTCTTGATAT+TGG 0.275190 2_1:+55635553 Msa0213080:CDS
TGCATGTGTAAATTGAATTA+GGG 0.279603 2_1:-55628279 Msa0213070:intron
ACTGGAATCTTCTTATGAAT+TGG 0.280289 2_1:-55629452 None:intergenic
ACTGGAATCTTCTTATGAAT+TGG 0.280289 2_1:-55634548 None:intergenic
TGCAATACATAGATGAAGTT+TGG 0.296178 2_1:+55629519 Msa0213080:CDS
TGCAATACATAGATGAAGTT+TGG 0.296178 2_1:+55634615 Msa0213080:CDS
GGTTGATTATAGTGACAAAA+AGG 0.317820 2_1:+55629601 Msa0213080:CDS
GGTTGATTATAGTGACAAAA+AGG 0.317820 2_1:+55634697 Msa0213080:CDS
GCATAAAACCAGCTATAAAA+AGG 0.324151 2_1:-55635583 None:intergenic
TTTATGGTGGTGACACATTT+GGG 0.324656 2_1:+55635539 Msa0213080:CDS
GACATATGGCAACTTCAAAA+TGG 0.325407 2_1:+55635612 Msa0213080:CDS
ATTCCAGTTCTTATCCATAA+TGG 0.326052 2_1:+55634563 Msa0213080:CDS
GTGTAAATTGAATTAGGGTT+AGG 0.343640 2_1:-55628274 Msa0213070:intron
TTGGTCCAAGCTATTAGTTT+AGG 0.349750 2_1:-55635646 None:intergenic
CAGCTCTGAAGAACATTATC+AGG 0.356591 2_1:-55628350 Msa0213070:CDS
GATACATGGGCTAGCATGTT+TGG 0.368138 2_1:+55634428 Msa0213080:CDS
ATTCCAGTTCTTATCCATAA+TGG 0.369994 2_1:+55629467 Msa0213080:CDS
TCATACACTTTCTTCTGATC+AGG 0.396880 2_1:-55635706 None:intergenic
TTTCCATTATGGATAAGAAC+TGG 0.399668 2_1:-55634566 None:intergenic
ATCTCTCTCCATGCATCTCT+TGG 0.408511 2_1:-55635665 None:intergenic
GCTCTCTCATAAGGATTAGA+AGG 0.410231 2_1:-55629563 None:intergenic
GCTCTCTCATAAGGATTAGA+AGG 0.410231 2_1:-55634659 None:intergenic
TGTAAATTGAATTAGGGTTA+GGG 0.416356 2_1:-55628273 Msa0213070:intron
TTACCATTATGGATAAGAAC+TGG 0.430578 2_1:-55629470 None:intergenic
CTGATAATGTTCTTCAGAGC+TGG 0.435831 2_1:+55628351 Msa0213080:CDS
AAGAAAATGTGGCTTTCAAA+AGG 0.435917 2_1:+55635439 Msa0213080:CDS
AGAATATGAGGAAGGGAAGA+TGG 0.442414 2_1:+55635465 Msa0213080:CDS
CATTAAGAAAGTACTTGGAT+TGG 0.454767 2_1:+55635741 Msa0213080:CDS
CTAAGTTGTCTAGTGAGAAC+TGG 0.457620 2_1:-55634368 None:intergenic
CTAGCTTGAGCTCTCTCATA+AGG 0.462092 2_1:-55629572 None:intergenic
CTAGCTTGAGCTCTCTCATA+AGG 0.462092 2_1:-55634668 None:intergenic
GTGAGCATTAAGAAAGTACT+TGG 0.462381 2_1:+55635736 Msa0213080:CDS
AATAATTGCAGATTCACAAA+TGG 0.471536 2_1:-55629495 None:intergenic
AATAATTGCAGATTCACAAA+TGG 0.471536 2_1:-55634591 None:intergenic
CAGTTCTCACTAGACAACTT+AGG 0.484506 2_1:+55634369 Msa0213080:CDS
AAAGGAGAAGAATATGAGGA+AGG 0.489666 2_1:+55635457 Msa0213080:CDS
TTCAAAAGGAGAAGAATATG+AGG 0.519962 2_1:+55635453 Msa0213080:CDS
TGATAATGTTCTTCAGAGCT+GGG 0.529587 2_1:+55628352 Msa0213080:CDS
TGGCAACTTCAAAATGGAAA+CGG 0.530941 2_1:+55635618 Msa0213080:CDS
GGATTCATCTGAAGAAGTAA+AGG 0.531810 2_1:-55634527 None:intergenic
ATGACACTTGGAAGAAAATG+TGG 0.537717 2_1:+55635428 Msa0213080:CDS
AGGTAATTCTGTTAGATACA+TGG 0.538022 2_1:+55634414 Msa0213080:CDS
AAGGAGAAGAATATGAGGAA+GGG 0.539682 2_1:+55635458 Msa0213080:CDS
ATATGTAGGTTTATGACACT+TGG 0.541669 2_1:+55635416 Msa0213080:intron
TTTACACATGCAAATTCTGA+AGG 0.545814 2_1:+55628290 Msa0213080:CDS
AGTGTCCTAAACTAATAGCT+TGG 0.549117 2_1:+55635641 Msa0213080:CDS
GGTAATTCTGTTAGATACAT+GGG 0.584405 2_1:+55634415 Msa0213080:CDS
CTGAAGAACATTATCAGGAT+CGG 0.593763 2_1:-55628345 Msa0213070:intron
CTCTATCTTTAAGACACTAG+AGG 0.601570 2_1:+55635495 Msa0213080:CDS
TCTATCTTTAAGACACTAGA+GGG 0.610752 2_1:+55635496 Msa0213080:CDS
AGCTTGGACCAAGAGATGCA+TGG 0.654997 2_1:+55635657 Msa0213080:CDS
GAACATTATCAGGATCGGTG+AGG 0.720291 2_1:-55628340 Msa0213070:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAAAAAAAATTTTTTTT+GGG - chr2_1:55632952-55632971 None:intergenic 0.0%
!!! TTAATAAAAAAAATTTTTTT+TGG - chr2_1:55632953-55632972 None:intergenic 0.0%
!!! TTTAATTTAAAAATATTTTT+TGG - chr2_1:55633551-55633570 None:intergenic 0.0%
!! TAAAAAATAATATAAAAATT+TGG - chr2_1:55633684-55633703 None:intergenic 0.0%
!!! AAATTTTTATATTATTTTTT+AGG + chr2_1:55633683-55633702 Msa0213080:intron 0.0%
!!! TAAGTATATTTTTTTATCTA+AGG + chr2_1:55628933-55628952 Msa0213080:intron 10.0%
!!! AAGTATATTTTTTTATCTAA+GGG + chr2_1:55628934-55628953 Msa0213080:intron 10.0%
!! TGTAATAAATAGAAAATTAT+CGG - chr2_1:55630021-55630040 None:intergenic 10.0%
!!! TAAATTTTTTGATATTATGT+CGG + chr2_1:55631385-55631404 Msa0213080:intron 10.0%
!!! ATAAAAAAAATTTTTTTTGG+GGG - chr2_1:55632950-55632969 None:intergenic 10.0%
!!! TAAATTAAAATTGTTTTTCA+TGG + chr2_1:55633562-55633581 Msa0213080:intron 10.0%
!!! ATCAAATATTATCTAAAATA+TGG - chr2_1:55633934-55633953 None:intergenic 10.0%
!! AAATTGATTATAAAATTAAG+AGG - chr2_1:55634747-55634766 None:intergenic 10.0%
!!! CTTAATTTTATAATCAATTT+TGG + chr2_1:55634747-55634766 Msa0213080:intron 10.0%
!! CAAAATTATCAATATATATA+GGG - chr2_1:55635125-55635144 None:intergenic 10.0%
!! ACAAAATTATCAATATATAT+AGG - chr2_1:55635126-55635145 None:intergenic 10.0%
!!! ATTTTAAAATTTGACAGTTT+TGG - chr2_1:55628863-55628882 None:intergenic 15.0%
!!! GAACAAAATTATTTTAACAT+TGG + chr2_1:55629050-55629069 Msa0213080:intron 15.0%
!! ATTTACTATATTGAAAATCA+AGG - chr2_1:55629132-55629151 None:intergenic 15.0%
!!! ATTTTCAATATAGTAAATCT+TGG + chr2_1:55629134-55629153 Msa0213080:intron 15.0%
!! AAATTGATTATGAAATTAAG+AGG - chr2_1:55629651-55629670 None:intergenic 15.0%
!!! CTTAATTTCATAATCAATTT+TGG + chr2_1:55629651-55629670 Msa0213080:intron 15.0%
!!! CATGTTTTTTTTTTTTTTGA+GGG - chr2_1:55629975-55629994 None:intergenic 15.0%
!!! ATAAAACGATTTTTTCTAAA+AGG - chr2_1:55630212-55630231 None:intergenic 15.0%
!!! TTTTCAATGTAACAAAAAAT+TGG - chr2_1:55630783-55630802 None:intergenic 15.0%
!!! AACTATTTTTTTTTAGTGTT+CGG + chr2_1:55630842-55630861 Msa0213080:intron 15.0%
!!! AATGAAGTATTAAATGATTA+AGG + chr2_1:55631248-55631267 Msa0213080:intron 15.0%
!! TAAATGATTAAGGTTATTAT+AGG + chr2_1:55631258-55631277 Msa0213080:intron 15.0%
!! TGATAAAAGAAAATGTAAAT+TGG + chr2_1:55631542-55631561 Msa0213080:intron 15.0%
!! AAAAAAATGTTTAATTCACA+AGG - chr2_1:55631585-55631604 None:intergenic 15.0%
!!! TTAAACATTTTTTTTTGAAG+AGG + chr2_1:55631591-55631610 Msa0213080:intron 15.0%
!!! TAAAAATTCTTTATTTTGGA+CGG - chr2_1:55632606-55632625 None:intergenic 15.0%
!!! ATGGTAAAAATTCTTTATTT+TGG - chr2_1:55632610-55632629 None:intergenic 15.0%
!!! TAAAAAAAATTTTTTTTGGG+GGG - chr2_1:55632949-55632968 None:intergenic 15.0%
!! ATAATATAAAAATTTGGCAT+TGG - chr2_1:55633678-55633697 None:intergenic 15.0%
!! AACTCTCAAATTTAAAAATA+CGG - chr2_1:55633760-55633779 None:intergenic 15.0%
!!! ATTTTTAAATTTGAGAGTTT+TGG + chr2_1:55633761-55633780 Msa0213080:intron 15.0%
!!! TTTTAAAATTTTGACAACTT+TGG - chr2_1:55633964-55633983 None:intergenic 15.0%
!! ATTAGATTAAAGAATCAATT+TGG - chr2_1:55634090-55634109 None:intergenic 15.0%
!!! AAAATTATGATATGTACTTT+TGG - chr2_1:55634261-55634280 None:intergenic 15.0%
!! AGCATATTAATCTTATAATT+TGG - chr2_1:55634908-55634927 None:intergenic 15.0%
!!! TAAGTCAGAAATTTTTTATA+TGG + chr2_1:55635221-55635240 Msa0213080:intron 15.0%
!!! TCTCTATTTTTACTATTTTG+CGG - chr2_1:55628898-55628917 None:intergenic 20.0%
!! AATTAGACTAAAGAATCAAT+TGG - chr2_1:55628991-55629010 None:intergenic 20.0%
!!! AAAATTCTGAAATGTACTTT+TGG - chr2_1:55629165-55629184 None:intergenic 20.0%
!! TTCATATCTTATCCAAAAAA+TGG + chr2_1:55629193-55629212 Msa0213080:intron 20.0%
!! AAAAAGGTAACTTCTTAATT+TGG + chr2_1:55629617-55629636 Msa0213080:intron 20.0%
!! AAAAGGTAACTTCTTAATTT+GGG + chr2_1:55629618-55629637 Msa0213080:intron 20.0%
!!! AATTTCATAATCAATTTTGG+TGG + chr2_1:55629654-55629673 Msa0213080:intron 20.0%
!!! ATTTCATAATCAATTTTGGT+GGG + chr2_1:55629655-55629674 Msa0213080:intron 20.0%
!!! TGATATTTTTACCAAAGTTA+AGG + chr2_1:55629803-55629822 Msa0213080:intron 20.0%
!!! GATATTTTTACCAAAGTTAA+GGG + chr2_1:55629804-55629823 Msa0213080:intron 20.0%
!! TTAATTAAAGTTAACAAGCA+TGG + chr2_1:55629943-55629962 Msa0213080:intron 20.0%
!!! CCATGTTTTTTTTTTTTTTG+AGG - chr2_1:55629976-55629995 None:intergenic 20.0%
!! CCTCAAAAAAAAAAAAAACA+TGG + chr2_1:55629973-55629992 Msa0213080:intron 20.0%
!! GCAACATTATATAAAATTGT+TGG - chr2_1:55630394-55630413 None:intergenic 20.0%
!! ATATAAGTGAGGAAAATTAT+AGG - chr2_1:55630421-55630440 None:intergenic 20.0%
!! CAAAAATACAAATATAAGTG+AGG - chr2_1:55630432-55630451 None:intergenic 20.0%
!! TATTAGAAGAATATAGATGA+AGG - chr2_1:55630641-55630660 None:intergenic 20.0%
!! TGCATAATATATGAAAAGTT+CGG - chr2_1:55630878-55630897 None:intergenic 20.0%
!! TATCAATTGAGTTAAACTTA+CGG + chr2_1:55630905-55630924 Msa0213080:intron 20.0%
!! TAAATATATAGGGGTAATAT+AGG - chr2_1:55631206-55631225 None:intergenic 20.0%
!!! AGTAAAAATATTTGTTGTCT+TGG + chr2_1:55631308-55631327 Msa0213080:intron 20.0%
!! TCAAAATGTGACAATTAAAA+AGG + chr2_1:55631344-55631363 Msa0213080:intron 20.0%
!!! TTATCAAGTTTTGATGTTTA+TGG - chr2_1:55631528-55631547 None:intergenic 20.0%
!!! ATCAAAACAACATATTTTAC+AGG - chr2_1:55631967-55631986 None:intergenic 20.0%
!!! TTTTTGGTATGTTTTCTTTA+GGG - chr2_1:55632505-55632524 None:intergenic 20.0%
!!! AAAAAAAATTTTTTTTGGGG+GGG - chr2_1:55632948-55632967 None:intergenic 20.0%
!! ATTAAAAATAGATTCGATAG+AGG + chr2_1:55632968-55632987 Msa0213080:intron 20.0%
!!! GATGGATATTAGTTATTTTA+TGG + chr2_1:55633386-55633405 Msa0213080:intron 20.0%
!!! CCTCTATTTTTACTATTTTA+CGG + chr2_1:55633724-55633743 Msa0213080:intron 20.0%
!!! CTCTATTTTTACTATTTTAC+GGG + chr2_1:55633725-55633744 Msa0213080:intron 20.0%
!! ACTCTCAAATTTAAAAATAC+GGG - chr2_1:55633759-55633778 None:intergenic 20.0%
!! TTTCAGTTCAAAAATATGAT+GGG - chr2_1:55633791-55633810 None:intergenic 20.0%
!! ATTTCAGTTCAAAAATATGA+TGG - chr2_1:55633792-55633811 None:intergenic 20.0%
!!! ATTTTGTTCTTCTTTCTTAT+TGG - chr2_1:55629039-55629058 None:intergenic 20.0%
!!! GAACAAAATTAGTTTAACAT+TGG + chr2_1:55634153-55634172 Msa0213080:intron 20.0%
!! AATTCACTATATTGAAATCA+AGG - chr2_1:55634229-55634248 None:intergenic 20.0%
!! ATTCAAATCTTATCCAAAAA+TGG + chr2_1:55634288-55634307 Msa0213080:intron 20.0%
!! AAAAAGGTAACTTCTTAATT+TGG + chr2_1:55629617-55629636 Msa0213080:intron 20.0%
!!! ATAATTTGGAATATAACTCA+AGG - chr2_1:55634894-55634913 None:intergenic 20.0%
!! GTGCAAAATATTAGAAATTA+TGG + chr2_1:55634965-55634984 Msa0213080:intron 20.0%
!!! CTTTTTTTAGCTTATGAAAT+CGG + chr2_1:55635052-55635071 Msa0213080:intron 20.0%
!! AAAATATATACTAACAAGGA+TGG - chr2_1:55635081-55635100 None:intergenic 20.0%
!! CCAAAAAATATATACTAACA+AGG - chr2_1:55635085-55635104 None:intergenic 20.0%
!!! CCTTGTTAGTATATATTTTT+TGG + chr2_1:55635082-55635101 Msa0213080:intron 20.0%
!!! AAGATCACATTTTTTAGTAT+AGG + chr2_1:55635164-55635183 Msa0213080:intron 20.0%
!!! TTTTGGTCTATAAAAAGTTA+AGG - chr2_1:55635199-55635218 None:intergenic 20.0%
!!! AAAATTTCTGACTTAACTTT+TGG - chr2_1:55635216-55635235 None:intergenic 20.0%
!! GGATAAAGTAAATTAAATGA+TGG + chr2_1:55635360-55635379 Msa0213080:intron 20.0%
! TGTAAATTGAATTAGGGTTA+GGG - chr2_1:55628276-55628295 Msa0213070:intron 25.0%
! TGCATGTGTAAATTGAATTA+GGG - chr2_1:55628282-55628301 Msa0213070:intron 25.0%
! TTGCATGTGTAAATTGAATT+AGG - chr2_1:55628283-55628302 Msa0213070:intron 25.0%
! AACATACCACAACATATATA+TGG + chr2_1:55628502-55628521 Msa0213080:intron 25.0%
! ACATACCACAACATATATAT+GGG + chr2_1:55628503-55628522 Msa0213080:intron 25.0%
! TTTAGTAGATTAGACACATT+TGG + chr2_1:55628608-55628627 Msa0213080:intron 25.0%
! ACTTCGTATTGTATTCTTTA+AGG - chr2_1:55628648-55628667 None:intergenic 25.0%
!! TTAGAAGAGTATATAGATGA+AGG - chr2_1:55628698-55628717 None:intergenic 25.0%
!!! CAAAATGTGTAACCATTTTT+TGG - chr2_1:55629208-55629227 None:intergenic 25.0%
!! ACTTAGGATTTTTACAATCA+TGG + chr2_1:55629290-55629309 Msa0213080:intron 25.0%
! AATAATTGCAGATTCACAAA+TGG - chr2_1:55629498-55629517 None:intergenic 25.0%
! CAGTAACTTCAATTTATGAA+TGG + chr2_1:55629889-55629908 Msa0213080:intron 25.0%
! TATCATTTACAAGTTGTAAG+AGG - chr2_1:55629915-55629934 None:intergenic 25.0%
! GCATAAAATAATCAGATGTT+TGG - chr2_1:55630069-55630088 None:intergenic 25.0%
!! TTGATTTAGAACTCTCATTA+GGG + chr2_1:55630470-55630489 Msa0213080:intron 25.0%
! AACATAAGCACTAAAAGTAA+AGG - chr2_1:55630550-55630569 None:intergenic 25.0%
! AGATCGTATTGTATTCTTTA+AGG - chr2_1:55630597-55630616 None:intergenic 25.0%
! TGACAACATAACAACTTTAT+GGG - chr2_1:55630749-55630768 None:intergenic 25.0%
! ATGACAACATAACAACTTTA+TGG - chr2_1:55630750-55630769 None:intergenic 25.0%
! CATAATATATGAAAAGTTCG+GGG - chr2_1:55630876-55630895 None:intergenic 25.0%
! GCATAATATATGAAAAGTTC+GGG - chr2_1:55630877-55630896 None:intergenic 25.0%
! ATCAATTGAGTTAAACTTAC+GGG + chr2_1:55630906-55630925 Msa0213080:intron 25.0%
!!! TTTTAAAAATTAGTTGGCCA+CGG + chr2_1:55630981-55631000 Msa0213080:intron 25.0%
! AAAAATACACAATTAAACCG+TGG - chr2_1:55631001-55631020 None:intergenic 25.0%
! AAGTGACAATTATAAAGGAA+CGG - chr2_1:55631114-55631133 None:intergenic 25.0%
! TGCAAAAGTGACAATTATAA+AGG - chr2_1:55631119-55631138 None:intergenic 25.0%
!! GTTCAAAGTATCATTAAATG+TGG + chr2_1:55631175-55631194 Msa0213080:intron 25.0%
! TCTCTGCAATAAATATATAG+GGG - chr2_1:55631215-55631234 None:intergenic 25.0%
! CTCTCTGCAATAAATATATA+GGG - chr2_1:55631216-55631235 None:intergenic 25.0%
! TCTCTCTGCAATAAATATAT+AGG - chr2_1:55631217-55631236 None:intergenic 25.0%
!!! AGGTTAATTGTTAGTTTTTG+TGG - chr2_1:55631751-55631770 None:intergenic 25.0%
!! AACATATTTTACAGGCTATA+TGG - chr2_1:55631959-55631978 None:intergenic 25.0%
!! TTTAATCAGTTCAGTTTTCT+TGG - chr2_1:55632002-55632021 None:intergenic 25.0%
!!! GTGATTTTTTTCGATATGTT+TGG - chr2_1:55632085-55632104 None:intergenic 25.0%
!!! GTTTTTGGTATGTTTTCTTT+AGG - chr2_1:55632506-55632525 None:intergenic 25.0%
! GCTCAAAAAGTCTATTAAAT+CGG + chr2_1:55632549-55632568 Msa0213080:intron 25.0%
!!! ATTTTAATAGAGCTCTGTTA+GGG - chr2_1:55632820-55632839 None:intergenic 25.0%
!!! AAAAAAATTTTTTTTGGGGG+GGG - chr2_1:55632947-55632966 None:intergenic 25.0%
!!! ATTTTAGTTACATGTATGGT+TGG - chr2_1:55633224-55633243 None:intergenic 25.0%
!!! ATGGATTTTAGTTACATGTA+TGG - chr2_1:55633228-55633247 None:intergenic 25.0%
!! TTTGGTTCATTTAAAGAAAG+GGG - chr2_1:55633280-55633299 None:intergenic 25.0%
!! GTTTGGTTCATTTAAAGAAA+GGG - chr2_1:55633281-55633300 None:intergenic 25.0%
!! TGTTTGGTTCATTTAAAGAA+AGG - chr2_1:55633282-55633301 None:intergenic 25.0%
! ATTTGCGCTAAAAAAGAAAA+AGG + chr2_1:55633352-55633371 Msa0213080:intron 25.0%
!! TTTAGGTTTCATTGCAATTA+TGG + chr2_1:55633700-55633719 Msa0213080:intron 25.0%
! CCGTAAAATAGTAAAAATAG+AGG - chr2_1:55633727-55633746 None:intergenic 25.0%
!! TTTTTACTATTTTACGGGTT+TGG + chr2_1:55633730-55633749 Msa0213080:intron 25.0%
! TCTCAAATTTAAAAATACGG+GGG - chr2_1:55633757-55633776 None:intergenic 25.0%
! CTCTCAAATTTAAAAATACG+GGG - chr2_1:55633758-55633777 None:intergenic 25.0%
! ATGAGATCAATTCTACAAAA+TGG + chr2_1:55633983-55634002 Msa0213080:intron 25.0%
!! AAAATTAGTTTAACATTGGC+CGG + chr2_1:55634157-55634176 Msa0213080:intron 25.0%
!! TTATGATATGTACTTTTGGT+TGG - chr2_1:55634257-55634276 None:intergenic 25.0%
!! ACAAAATGTGTAACCATTTT+TGG - chr2_1:55629209-55629228 None:intergenic 25.0%
!! ACTTAGGATTTTTACAATCA+TGG + chr2_1:55629290-55629309 Msa0213080:intron 25.0%
! AATAATTGCAGATTCACAAA+TGG - chr2_1:55629498-55629517 None:intergenic 25.0%
!! TCTAATATTTTGCACTTGAA+TGG - chr2_1:55634960-55634979 None:intergenic 25.0%
! ATATGCTTATTAGAAATCTC+AGG + chr2_1:55634994-55635013 Msa0213080:intron 25.0%
! TATGCTTATTAGAAATCTCA+GGG + chr2_1:55634995-55635014 Msa0213080:intron 25.0%
! ACAGAGATTAAAAAAACTGA+TGG + chr2_1:55635269-55635288 Msa0213080:intron 25.0%
! CAGAGATTAAAAAAACTGAT+GGG + chr2_1:55635270-55635289 Msa0213080:intron 25.0%
! TTGATCTTGAATGTATATGT+AGG + chr2_1:55635402-55635421 Msa0213080:intron 25.0%
!!! TTTTATGCTTTTGAGACATA+TGG + chr2_1:55635598-55635617 Msa0213080:CDS 25.0%
GTGTAAATTGAATTAGGGTT+AGG - chr2_1:55628277-55628296 Msa0213070:intron 30.0%
TTTACACATGCAAATTCTGA+AGG + chr2_1:55628290-55628309 Msa0213080:CDS 30.0%
CATACCACAACATATATATG+GGG + chr2_1:55628504-55628523 Msa0213080:intron 30.0%
ATACCACAACATATATATGG+GGG + chr2_1:55628505-55628524 Msa0213080:intron 30.0%
! TTTTACTATTTTGCCCCTTT+GGG - chr2_1:55628562-55628581 None:intergenic 30.0%
! TTTTTACTATTTTGCCCCTT+TGG - chr2_1:55628563-55628582 None:intergenic 30.0%
GGGGCAAAATAGTAAAAAAA+CGG + chr2_1:55628565-55628584 Msa0213080:intron 30.0%
!!! TTCTGAAATGTACTTTTGGT+TGG - chr2_1:55629161-55629180 None:intergenic 30.0%
GTGCTAGTTATTTATGAAGT+GGG - chr2_1:55629250-55629269 None:intergenic 30.0%
AGTGCTAGTTATTTATGAAG+TGG - chr2_1:55629251-55629270 None:intergenic 30.0%
AGGTAATTCTGTTAGATACA+TGG + chr2_1:55629319-55629338 Msa0213080:intron 30.0%
GGTAATTCTGTTAGATACAT+GGG + chr2_1:55629320-55629339 Msa0213080:intron 30.0%
ACTGGAATCTTCTTATGAAT+TGG - chr2_1:55629455-55629474 None:intergenic 30.0%
ATTCCAGTTCTTATCCATAA+TGG + chr2_1:55629467-55629486 Msa0213080:CDS 30.0%
TTACCATTATGGATAAGAAC+TGG - chr2_1:55629473-55629492 None:intergenic 30.0%
! CACAAATGGATTTACCATTA+TGG - chr2_1:55629484-55629503 None:intergenic 30.0%
TGCAATACATAGATGAAGTT+TGG + chr2_1:55629519-55629538 Msa0213080:CDS 30.0%
GGTTGATTATAGTGACAAAA+AGG + chr2_1:55629601-55629620 Msa0213080:CDS 30.0%
ATCAATCATTCCCTTAACTT+TGG - chr2_1:55629817-55629836 None:intergenic 30.0%
! AATCAAGCAAATGAGTTGAA+AGG - chr2_1:55630456-55630475 None:intergenic 30.0%
! CTTGATTTAGAACTCTCATT+AGG + chr2_1:55630469-55630488 Msa0213080:intron 30.0%
! TGATTTAGAACTCTCATTAG+GGG + chr2_1:55630471-55630490 Msa0213080:intron 30.0%
TAGAAGAATATAGATGAAGG+TGG - chr2_1:55630638-55630657 None:intergenic 30.0%
TCCTTATTATGTCATTGAGA+CGG + chr2_1:55630812-55630831 Msa0213080:intron 30.0%
TCAATTGAGTTAAACTTACG+GGG + chr2_1:55630907-55630926 Msa0213080:intron 30.0%
TAAAAAACGACTTCTTAGGT+CGG - chr2_1:55631061-55631080 None:intergenic 30.0%
CAACTAAAAAACGACTTCTT+AGG - chr2_1:55631065-55631084 None:intergenic 30.0%
!! AGGGAGTATTGAATTAGATT+AGG - chr2_1:55631091-55631110 None:intergenic 30.0%
TGACAATTAAAAAGGAACAG+AGG + chr2_1:55631352-55631371 Msa0213080:intron 30.0%
GACAATTAAAAAGGAACAGA+GGG + chr2_1:55631353-55631372 Msa0213080:intron 30.0%
! TTTTGATATTATGTCGGATG+CGG + chr2_1:55631391-55631410 Msa0213080:intron 30.0%
TTTGTATTACCACCTCAAAA+TGG + chr2_1:55631624-55631643 Msa0213080:intron 30.0%
ATGTGATTCTGTTTGAACTT+TGG - chr2_1:55631684-55631703 None:intergenic 30.0%
ACAACTTTCATATGGTTGAA+AGG - chr2_1:55631840-55631859 None:intergenic 30.0%
TTAAGTCGACAACTTTCATA+TGG - chr2_1:55631848-55631867 None:intergenic 30.0%
CAAAATTAGCTCAATTCATC+AGG - chr2_1:55631883-55631902 None:intergenic 30.0%
TTGGAAAGAAAGAAACAACA+GGG - chr2_1:55631916-55631935 None:intergenic 30.0%
TTTGGAAAGAAAGAAACAAC+AGG - chr2_1:55631917-55631936 None:intergenic 30.0%
AATCACACTGTAAAAACAAG+TGG + chr2_1:55632099-55632118 Msa0213080:intron 30.0%
ATCACACTGTAAAAACAAGT+GGG + chr2_1:55632100-55632119 Msa0213080:intron 30.0%
CAAAAGTAATAACATTCCGA+CGG + chr2_1:55632168-55632187 Msa0213080:intron 30.0%
!! TAGTGCTTATAACTTGTTGT+CGG - chr2_1:55632318-55632337 None:intergenic 30.0%
ACTTCATAATATTTCCTTGC+AGG - chr2_1:55632399-55632418 None:intergenic 30.0%
! TTTTGAGCTCTCTTTATTGA+AGG - chr2_1:55632537-55632556 None:intergenic 30.0%
AGTAATGTTCATCAGTTAGT+GGG - chr2_1:55632635-55632654 None:intergenic 30.0%
TAGTAATGTTCATCAGTTAG+TGG - chr2_1:55632636-55632655 None:intergenic 30.0%
!! GATTTTAATAGAGCTCTGTT+AGG - chr2_1:55632821-55632840 None:intergenic 30.0%
GGAAAATATCTTGGATTGAT+TGG - chr2_1:55632898-55632917 None:intergenic 30.0%
!!! AAAAAATTTTTTTTGGGGGG+GGG - chr2_1:55632946-55632965 None:intergenic 30.0%
GTAGTTAAACGCTTAATAAG+AGG + chr2_1:55633116-55633135 Msa0213080:intron 30.0%
AGATATTTCAGTTTGCCTAT+TGG - chr2_1:55633173-55633192 None:intergenic 30.0%
! TTCTATTTCTTACTCATCTG+AGG - chr2_1:55633307-55633326 None:intergenic 30.0%
AAAGAAAAAGGAAGGATACA+AGG + chr2_1:55633364-55633383 Msa0213080:intron 30.0%
AGAGTAGAAATCGTTAAAGA+GGG + chr2_1:55633433-55633452 Msa0213080:intron 30.0%
ATCGTTAAAGAGGGATTTAA+AGG + chr2_1:55633442-55633461 Msa0213080:intron 30.0%
TCGTTAAAGAGGGATTTAAA+GGG + chr2_1:55633443-55633462 Msa0213080:intron 30.0%
CTTATTCTACGCAATAAACT+TGG - chr2_1:55634188-55634207 None:intergenic 30.0%
GTGCTAGTTATTTATGAAGT+GGG - chr2_1:55629250-55629269 None:intergenic 30.0%
AGTGCTAGTTATTTATGAAG+TGG - chr2_1:55629251-55629270 None:intergenic 30.0%
AGGTAATTCTGTTAGATACA+TGG + chr2_1:55629319-55629338 Msa0213080:intron 30.0%
GGTAATTCTGTTAGATACAT+GGG + chr2_1:55629320-55629339 Msa0213080:intron 30.0%
ACTGGAATCTTCTTATGAAT+TGG - chr2_1:55629455-55629474 None:intergenic 30.0%
ATTCCAGTTCTTATCCATAA+TGG + chr2_1:55629467-55629486 Msa0213080:CDS 30.0%
TTTCCATTATGGATAAGAAC+TGG - chr2_1:55634569-55634588 None:intergenic 30.0%
!! CACAAATGGATTTTCCATTA+TGG - chr2_1:55634580-55634599 None:intergenic 30.0%
TGCAATACATAGATGAAGTT+TGG + chr2_1:55629519-55629538 Msa0213080:CDS 30.0%
GGTTGATTATAGTGACAAAA+AGG + chr2_1:55629601-55629620 Msa0213080:CDS 30.0%
TAGAGTCTAATCTCATTGAA+GGG - chr2_1:55634796-55634815 None:intergenic 30.0%
TTAGAGTCTAATCTCATTGA+AGG - chr2_1:55634797-55634816 None:intergenic 30.0%
TCATCCAAAAATTAAACTCG+AGG + chr2_1:55634865-55634884 Msa0213080:intron 30.0%
!! CGACTTTTGTTACTTATAGA+CGG - chr2_1:55635339-55635358 None:intergenic 30.0%
TCTATAAGTAACAAAAGTCG+TGG + chr2_1:55635339-55635358 Msa0213080:intron 30.0%
! TGATGGACAATACAAACATT+CGG + chr2_1:55635377-55635396 Msa0213080:intron 30.0%
ATATGTAGGTTTATGACACT+TGG + chr2_1:55635416-55635435 Msa0213080:intron 30.0%
AAGAAAATGTGGCTTTCAAA+AGG + chr2_1:55635439-55635458 Msa0213080:CDS 30.0%
TTCAAAAGGAGAAGAATATG+AGG + chr2_1:55635453-55635472 Msa0213080:CDS 30.0%
!! TCTATCTTTAAGACACTAGA+GGG + chr2_1:55635496-55635515 Msa0213080:CDS 30.0%
!!! TTGAGTGACAAGCTTTTTTA+TGG + chr2_1:55635523-55635542 Msa0213080:CDS 30.0%
! ACATTTGGGTTTCTTGATAT+TGG + chr2_1:55635553-55635572 Msa0213080:CDS 30.0%
! GTTTGATTCCTTTTTATAGC+TGG + chr2_1:55635575-55635594 Msa0213080:CDS 30.0%
GCATAAAACCAGCTATAAAA+AGG - chr2_1:55635586-55635605 None:intergenic 30.0%
!! CATTAAGAAAGTACTTGGAT+TGG + chr2_1:55635741-55635760 Msa0213080:CDS 30.0%
CTGAAGAACATTATCAGGAT+CGG - chr2_1:55628348-55628367 Msa0213070:CDS 35.0%
! TGATAATGTTCTTCAGAGCT+GGG + chr2_1:55628352-55628371 Msa0213080:CDS 35.0%
!!! TTGGGGGTATTTTCGTAAAT+TGG - chr2_1:55628544-55628563 None:intergenic 35.0%
ATTTACGAAAATACCCCCAA+AGG + chr2_1:55628544-55628563 Msa0213080:intron 35.0%
TTTACGAAAATACCCCCAAA+GGG + chr2_1:55628545-55628564 Msa0213080:intron 35.0%
! TTTACTATTTTGCCCCTTTG+GGG - chr2_1:55628561-55628580 None:intergenic 35.0%
! GAAGAGTATATAGATGAAGG+TGG - chr2_1:55628695-55628714 None:intergenic 35.0%
TTCTCATCATCTTAGCATCT+TGG - chr2_1:55628750-55628769 None:intergenic 35.0%
GGATTCATCTGAAGAAGTAA+AGG - chr2_1:55629434-55629453 None:intergenic 35.0%
! TAGAGTCTTGTCTCATTGAA+GGG - chr2_1:55629696-55629715 None:intergenic 35.0%
! TTAGAGTCTTGTCTCATTGA+AGG - chr2_1:55629697-55629716 None:intergenic 35.0%
TGATTGATTGATCGAGAGAA+AGG + chr2_1:55629829-55629848 Msa0213080:intron 35.0%
GATTGATTGATCGAGAGAAA+GGG + chr2_1:55629830-55629849 Msa0213080:intron 35.0%
! TCTTTTACTTGTTCTAACCG+AGG + chr2_1:55630107-55630126 Msa0213080:intron 35.0%
! CTTTTACTTGTTCTAACCGA+GGG + chr2_1:55630108-55630127 Msa0213080:intron 35.0%
TTATTTGCATTTGACATCGC+AGG + chr2_1:55630228-55630247 Msa0213080:intron 35.0%
CAAATACGACGAATGCAATT+TGG - chr2_1:55630315-55630334 None:intergenic 35.0%
! GATTTAGAACTCTCATTAGG+GGG + chr2_1:55630472-55630491 Msa0213080:intron 35.0%
! ATTTAGAACTCTCATTAGGG+GGG + chr2_1:55630473-55630492 Msa0213080:intron 35.0%
GGAATATAGAAAGCAAGAGA+GGG - chr2_1:55630728-55630747 None:intergenic 35.0%
CCTTATTATGTCATTGAGAC+GGG + chr2_1:55630813-55630832 Msa0213080:intron 35.0%
GACAATTATAAAGGAACGGA+GGG - chr2_1:55631110-55631129 None:intergenic 35.0%
TGACAATTATAAAGGAACGG+AGG - chr2_1:55631111-55631130 None:intergenic 35.0%
AATCTTCCTCTCAATTACCA+CGG - chr2_1:55631807-55631826 None:intergenic 35.0%
! AAGAAACAACAGGGTATTCA+AGG - chr2_1:55631907-55631926 None:intergenic 35.0%
! TATATGGTTTGCAACTGCTT+GGG - chr2_1:55631943-55631962 None:intergenic 35.0%
! AATCAGTTCAGTTTTCTTGG+TGG - chr2_1:55631999-55632018 None:intergenic 35.0%
ATGTTTGGATGTTCATTCTC+AGG - chr2_1:55632070-55632089 None:intergenic 35.0%
! CCAAATACAATCTTTTCCGT+CGG - chr2_1:55632187-55632206 None:intergenic 35.0%
CGGAAAAGATTGTATTTGGT+AGG + chr2_1:55632188-55632207 Msa0213080:intron 35.0%
GCAAAAATGATCACCTTCAA+AGG + chr2_1:55632236-55632255 Msa0213080:intron 35.0%
GGAAACTTCATCAGTGTATT+CGG - chr2_1:55632345-55632364 None:intergenic 35.0%
!! ATAGAGTTGATAGATGGTTG+TGG - chr2_1:55632373-55632392 None:intergenic 35.0%
!! AGGTTGATAGAGTTGATAGA+TGG - chr2_1:55632379-55632398 None:intergenic 35.0%
!!! TGGTATGTTTTCTTTAGGGT+GGG - chr2_1:55632501-55632520 None:intergenic 35.0%
!! TTGGTATGTTTTCTTTAGGG+TGG - chr2_1:55632502-55632521 None:intergenic 35.0%
!!! TTTATTTTGGACGGATGTGT+GGG - chr2_1:55632597-55632616 None:intergenic 35.0%
! CAATCCAAGATATTTTCCTG+TGG + chr2_1:55632900-55632919 Msa0213080:intron 35.0%
TAGACCACAGGAAAATATCT+TGG - chr2_1:55632907-55632926 None:intergenic 35.0%
!!! AAAAATTTTTTTTGGGGGGG+GGG - chr2_1:55632945-55632964 None:intergenic 35.0%
ATAGAGGAAACAATACCTGA+TGG + chr2_1:55632984-55633003 Msa0213080:intron 35.0%
AGTTCGAATTTCTTGTCCTT+TGG - chr2_1:55633080-55633099 None:intergenic 35.0%
TATTTCAGTTTGCCTATTGG+TGG - chr2_1:55633170-55633189 None:intergenic 35.0%
! TGGTTGGTTCAAATGAAATG+AGG - chr2_1:55633208-55633227 None:intergenic 35.0%
GCGCTAAAAAAGAAAAAGGA+AGG + chr2_1:55633356-55633375 Msa0213080:intron 35.0%
AAAAAGGAAGGATACAAGGA+TGG + chr2_1:55633368-55633387 Msa0213080:intron 35.0%
GAGAGTAGAAATCGTTAAAG+AGG + chr2_1:55633432-55633451 Msa0213080:intron 35.0%
TAAAGGGCTCAAACTATTGA+TGG + chr2_1:55633459-55633478 Msa0213080:intron 35.0%
! TTTTCATGGTCGCATTGTTA+TGG + chr2_1:55633576-55633595 Msa0213080:intron 35.0%
GGATTCATCTGAAGAAGTAA+AGG - chr2_1:55629434-55629453 None:intergenic 35.0%
!! GAAGCCTCGAGTTTAATTTT+TGG - chr2_1:55634872-55634891 None:intergenic 35.0%
AAACTGATGGGAAATTTCAC+AGG + chr2_1:55635282-55635301 Msa0213080:intron 35.0%
ATGACACTTGGAAGAAAATG+TGG + chr2_1:55635428-55635447 Msa0213080:CDS 35.0%
AAAGGAGAAGAATATGAGGA+AGG + chr2_1:55635457-55635476 Msa0213080:CDS 35.0%
AAGGAGAAGAATATGAGGAA+GGG + chr2_1:55635458-55635477 Msa0213080:CDS 35.0%
!! CTCTATCTTTAAGACACTAG+AGG + chr2_1:55635495-55635514 Msa0213080:CDS 35.0%
!!! AGTGACAAGCTTTTTTATGG+TGG + chr2_1:55635526-55635545 Msa0213080:CDS 35.0%
!! TTTTATGGTGGTGACACATT+TGG + chr2_1:55635538-55635557 Msa0213080:CDS 35.0%
! TTTATGGTGGTGACACATTT+GGG + chr2_1:55635539-55635558 Msa0213080:CDS 35.0%
GACATATGGCAACTTCAAAA+TGG + chr2_1:55635612-55635631 Msa0213080:CDS 35.0%
TGGCAACTTCAAAATGGAAA+CGG + chr2_1:55635618-55635637 Msa0213080:CDS 35.0%
AGTGTCCTAAACTAATAGCT+TGG + chr2_1:55635641-55635660 Msa0213080:CDS 35.0%
! TTGGTCCAAGCTATTAGTTT+AGG - chr2_1:55635649-55635668 None:intergenic 35.0%
TCATACACTTTCTTCTGATC+AGG - chr2_1:55635709-55635728 None:intergenic 35.0%
!! GTGAGCATTAAGAAAGTACT+TGG + chr2_1:55635736-55635755 Msa0213080:CDS 35.0%
!! CAGCTCTGAAGAACATTATC+AGG - chr2_1:55628353-55628372 Msa0213070:CDS 40.0%
! CTGATAATGTTCTTCAGAGC+TGG + chr2_1:55628351-55628370 Msa0213080:CDS 40.0%
! TTAGAGAGAACGCGTTTTTG+AGG + chr2_1:55628458-55628477 Msa0213080:intron 40.0%
TCTCCCCCATATATATGTTG+TGG - chr2_1:55628511-55628530 None:intergenic 40.0%
CAACATATATATGGGGGAGA+TGG + chr2_1:55628511-55628530 Msa0213080:intron 40.0%
TTACGAAAATACCCCCAAAG+GGG + chr2_1:55628546-55628565 Msa0213080:intron 40.0%
! TTACTATTTTGCCCCTTTGG+GGG - chr2_1:55628560-55628579 None:intergenic 40.0%
GATTCTACGCACAATAAACG+TGG - chr2_1:55629085-55629104 None:intergenic 40.0%
CTAAGTTGTCTAGTGAGAAC+TGG - chr2_1:55629276-55629295 None:intergenic 40.0%
CAGTTCTCACTAGACAACTT+AGG + chr2_1:55629274-55629293 Msa0213080:intron 40.0%
! TTTTACAATCATGGCGAACG+AGG + chr2_1:55629299-55629318 Msa0213080:intron 40.0%
GCTCTCTCATAAGGATTAGA+AGG - chr2_1:55629566-55629585 None:intergenic 40.0%
! AGAGAGCTCAAGCTAGATTT+TGG + chr2_1:55629579-55629598 Msa0213080:CDS 40.0%
! GAGAGCTCAAGCTAGATTTT+GGG + chr2_1:55629580-55629599 Msa0213080:CDS 40.0%
!! TGCAATTTGGTGTTGAAGGA+GGG - chr2_1:55630302-55630321 None:intergenic 40.0%
!! ATGCAATTTGGTGTTGAAGG+AGG - chr2_1:55630303-55630322 None:intergenic 40.0%
!! CGAATGCAATTTGGTGTTGA+AGG - chr2_1:55630306-55630325 None:intergenic 40.0%
GGACGATCTTAGTACTTGTT+AGG + chr2_1:55630501-55630520 Msa0213080:intron 40.0%
! GATCTTAGTACTTGTTAGGC+TGG + chr2_1:55630505-55630524 Msa0213080:intron 40.0%
AAGGCCACTAGCAATTAGTA+AGG - chr2_1:55630531-55630550 None:intergenic 40.0%
GGGAATATAGAAAGCAAGAG+AGG - chr2_1:55630729-55630748 None:intergenic 40.0%
CCCGTCTCAATGACATAATA+AGG - chr2_1:55630816-55630835 None:intergenic 40.0%
TTGAGTTAAACTTACGGGGA+CGG + chr2_1:55630911-55630930 Msa0213080:intron 40.0%
!!! GACGGCAAAATAGCTTGTTT+TGG + chr2_1:55630929-55630948 Msa0213080:intron 40.0%
!!! CTTGTTTTGGCAAGTATGTG+TGG + chr2_1:55630942-55630961 Msa0213080:intron 40.0%
!! GTTGTTTTCTTCCGCATTTG+CGG - chr2_1:55631729-55631748 None:intergenic 40.0%
CCTATGCCAAGAGTAGTAAA+CGG + chr2_1:55631768-55631787 Msa0213080:intron 40.0%
CTTAGTCCGTTTACTACTCT+TGG - chr2_1:55631777-55631796 None:intergenic 40.0%
TTGCAACTGCTTGGGAAATT+TGG - chr2_1:55631935-55631954 None:intergenic 40.0%
! CTATATGGTTTGCAACTGCT+TGG - chr2_1:55631944-55631963 None:intergenic 40.0%
ATGTTCATTCTCAGGTGGAT+TGG - chr2_1:55632062-55632081 None:intergenic 40.0%
TTTGGATGTTCATTCTCAGG+TGG - chr2_1:55632067-55632086 None:intergenic 40.0%
TTTGATGCTCAGTATTGCGT+TGG - chr2_1:55632152-55632171 None:intergenic 40.0%
CCGACGGAAAAGATTGTATT+TGG + chr2_1:55632184-55632203 Msa0213080:intron 40.0%
!! TGAAGGTGATCATTTTTGCC+TGG - chr2_1:55632235-55632254 None:intergenic 40.0%
ATCAACTCTATCAACCTGCA+AGG + chr2_1:55632382-55632401 Msa0213080:intron 40.0%
!!! TATGTTTTCTTTAGGGTGGG+GGG - chr2_1:55632498-55632517 None:intergenic 40.0%
!!! GTATGTTTTCTTTAGGGTGG+GGG - chr2_1:55632499-55632518 None:intergenic 40.0%
!!! GGTATGTTTTCTTTAGGGTG+GGG - chr2_1:55632500-55632519 None:intergenic 40.0%
! TTGAAGGAGGAGTCTGTTTT+TGG - chr2_1:55632521-55632540 None:intergenic 40.0%
TGAGCTCTCTTTATTGAAGG+AGG - chr2_1:55632534-55632553 None:intergenic 40.0%
!!! CTTTATTTTGGACGGATGTG+TGG - chr2_1:55632598-55632617 None:intergenic 40.0%
! TAGGTTATGGTTTAGGGTGT+TGG - chr2_1:55632765-55632784 None:intergenic 40.0%
GAGGGATAGGTTATGGTTTA+GGG - chr2_1:55632771-55632790 None:intergenic 40.0%
AGAGGGATAGGTTATGGTTT+AGG - chr2_1:55632772-55632791 None:intergenic 40.0%
TTTGGGGGTAAGGAGAATTA+GGG - chr2_1:55632843-55632862 None:intergenic 40.0%
AACTATTTGTCGAAGTCAGG+AGG - chr2_1:55632873-55632892 None:intergenic 40.0%
GCAAACTATTTGTCGAAGTC+AGG - chr2_1:55632876-55632895 None:intergenic 40.0%
!!! AAAATTTTTTTTGGGGGGGG+GGG - chr2_1:55632944-55632963 None:intergenic 40.0%
!! GTACGCTCTTTCCTTTTTCA+AGG - chr2_1:55633012-55633031 None:intergenic 40.0%
! AAAAAGGAAAGAGCGTACAC+AGG + chr2_1:55633014-55633033 Msa0213080:intron 40.0%
TCGAATTTCTTGTCCTTTGG+TGG - chr2_1:55633077-55633096 None:intergenic 40.0%
TAACTACTAGACTGTCTGGT+TGG - chr2_1:55633103-55633122 None:intergenic 40.0%
CGTTTAACTACTAGACTGTC+TGG - chr2_1:55633107-55633126 None:intergenic 40.0%
ATGAAATGAGGAGCAAAGAG+AGG - chr2_1:55633196-55633215 None:intergenic 40.0%
! TTACTCATCTGAGGTCTGTT+TGG - chr2_1:55633298-55633317 None:intergenic 40.0%
! GCATTGGCAATTCTATACGA+GGG - chr2_1:55633662-55633681 None:intergenic 40.0%
!! CGCAATAAACTTGGATTAGC+CGG - chr2_1:55634179-55634198 None:intergenic 40.0%
CTAAGTTGTCTAGTGAGAAC+TGG - chr2_1:55629276-55629295 None:intergenic 40.0%
CAGTTCTCACTAGACAACTT+AGG + chr2_1:55629274-55629293 Msa0213080:intron 40.0%
! TTTTACAATCATGGCGAACG+AGG + chr2_1:55629299-55629318 Msa0213080:intron 40.0%
GCTCTCTCATAAGGATTAGA+AGG - chr2_1:55629566-55629585 None:intergenic 40.0%
! AGAGAGCTCAAGCTAGATTT+TGG + chr2_1:55629579-55629598 Msa0213080:CDS 40.0%
! GAGAGCTCAAGCTAGATTTT+GGG + chr2_1:55629580-55629599 Msa0213080:CDS 40.0%
GATGGGAAATTTCACAGGAA+CGG + chr2_1:55635287-55635306 Msa0213080:intron 40.0%
CACAGGAACGGTAAAAAATG+TGG + chr2_1:55635299-55635318 Msa0213080:intron 40.0%
AGAATATGAGGAAGGGAAGA+TGG + chr2_1:55635465-55635484 Msa0213080:CDS 40.0%
GAACATTATCAGGATCGGTG+AGG - chr2_1:55628343-55628362 Msa0213070:intron 45.0%
ATGTTCTTCAGAGCTGGGTA+TGG + chr2_1:55628357-55628376 Msa0213080:intron 45.0%
!!! AGAACGCGTTTTTGAGGTAG+TGG + chr2_1:55628464-55628483 Msa0213080:intron 45.0%
!!! GAACGCGTTTTTGAGGTAGT+GGG + chr2_1:55628465-55628484 Msa0213080:intron 45.0%
!! GATACATGGGCTAGCATGTT+TGG + chr2_1:55629333-55629352 Msa0213080:intron 45.0%
CTAGCTTGAGCTCTCTCATA+AGG - chr2_1:55629575-55629594 None:intergenic 45.0%
CTAACCGAGGGTCTAATCAA+CGG + chr2_1:55630120-55630139 Msa0213080:intron 45.0%
CAACTAAAGCTAGTCACGCA+AGG - chr2_1:55630261-55630280 None:intergenic 45.0%
!! CTGGCCTTACTAATTGCTAG+TGG + chr2_1:55630524-55630543 Msa0213080:intron 45.0%
TATTATGTCGGATGCGGATC+TGG + chr2_1:55631397-55631416 Msa0213080:intron 45.0%
GAGAAACCAAACCGCAAATG+CGG + chr2_1:55631715-55631734 Msa0213080:intron 45.0%
TTTCTTCCGCATTTGCGGTT+TGG - chr2_1:55631724-55631743 None:intergenic 45.0%
CCGTTTACTACTCTTGGCAT+AGG - chr2_1:55631771-55631790 None:intergenic 45.0%
TTCCTCTCAATTACCACGGT+TGG - chr2_1:55631803-55631822 None:intergenic 45.0%
! TTTTTGCCTGGCGTCTGTTT+CGG - chr2_1:55632223-55632242 None:intergenic 45.0%
GCACAAGAACGTTCCTTTGA+AGG - chr2_1:55632252-55632271 None:intergenic 45.0%
AACGTTCTTGTGCCATAGAG+AGG + chr2_1:55632259-55632278 Msa0213080:intron 45.0%
TTCTCCTCATGTCGAACAAG+TGG - chr2_1:55632294-55632313 None:intergenic 45.0%
TGATAGATGGTTGTGGAGGT+TGG - chr2_1:55632366-55632385 None:intergenic 45.0%
!! GAGTTGATAGATGGTTGTGG+AGG - chr2_1:55632370-55632389 None:intergenic 45.0%
! AAGTTTGTTTGCGTGGGAAG+AGG - chr2_1:55632447-55632466 None:intergenic 45.0%
!! GGTAGGTGGATTGTCGTTTA+GGG - chr2_1:55632576-55632595 None:intergenic 45.0%
GTTCATCAGTTAGTGGGAGA+TGG - chr2_1:55632629-55632648 None:intergenic 45.0%
GAGGGATATATCCGCTTTGA+GGG - chr2_1:55632675-55632694 None:intergenic 45.0%
!! TGAGGTTTCAAGTTGGTGGA+GGG - chr2_1:55632693-55632712 None:intergenic 45.0%
TCCACCAACTTGAAACCTCA+CGG + chr2_1:55632693-55632712 Msa0213080:intron 45.0%
TAGTGGAGAGGGATAGGTTA+TGG - chr2_1:55632778-55632797 None:intergenic 45.0%
ATAGAGCTCTGTTAGGGAAG+TGG - chr2_1:55632814-55632833 None:intergenic 45.0%
GTTTGGGGGTAAGGAGAATT+AGG - chr2_1:55632844-55632863 None:intergenic 45.0%
ATTTGTCGAAGTCAGGAGGT+TGG - chr2_1:55632869-55632888 None:intergenic 45.0%
!!! AAATTTTTTTTGGGGGGGGG+GGG - chr2_1:55632943-55632962 None:intergenic 45.0%
ACCTGATGGAGCCTTGAAAA+AGG + chr2_1:55632998-55633017 Msa0213080:intron 45.0%
!!! TCCTTTTTCAAGGCTCCATC+AGG - chr2_1:55633002-55633021 None:intergenic 45.0%
! CTATTGGTGGTAATGCTCGT+CGG - chr2_1:55633157-55633176 None:intergenic 45.0%
!! GGCATTGGCAATTCTATACG+AGG - chr2_1:55633663-55633682 None:intergenic 45.0%
!! GATACATGGGCTAGCATGTT+TGG + chr2_1:55629333-55629352 Msa0213080:intron 45.0%
CTAGCTTGAGCTCTCTCATA+AGG - chr2_1:55629575-55629594 None:intergenic 45.0%
ATCTCTCTCCATGCATCTCT+TGG - chr2_1:55635668-55635687 None:intergenic 45.0%
!! AAAAATTAGAAATTAAAATT+TGG - chr2_1:55630168-55630187 None:intergenic 5.0%
!!! TTTAATTTTTAAAAATTAGT+TGG + chr2_1:55630975-55630994 Msa0213080:intron 5.0%
!!! AATAAAAAAAATTTTTTTTG+GGG - chr2_1:55632951-55632970 None:intergenic 5.0%
TTCTTCAGAGCTGGGTATGG+CGG + chr2_1:55628360-55628379 Msa0213080:intron 50.0%
!!! GCGTTTTTGAGGTAGTGGGA+AGG + chr2_1:55628469-55628488 Msa0213080:intron 50.0%
! ACCACCGTTGATTAGACCCT+CGG - chr2_1:55630127-55630146 None:intergenic 50.0%
AGGGTCTAATCAACGGTGGT+AGG + chr2_1:55630127-55630146 Msa0213080:intron 50.0%
ACTCTCATTAGGGGGGTTAG+TGG + chr2_1:55630480-55630499 Msa0213080:intron 50.0%
CTCTCAATTACCACGGTTGG+TGG - chr2_1:55631800-55631819 None:intergenic 50.0%
CACCAACCGTGGTAATTGAG+AGG + chr2_1:55631798-55631817 Msa0213080:intron 50.0%
GATGCTCAGTATTGCGTTGG+AGG - chr2_1:55632149-55632168 None:intergenic 50.0%
! TTTTGCCTGGCGTCTGTTTC+GGG - chr2_1:55632222-55632241 None:intergenic 50.0%
! GAGGCGAAGTTTGTTTGCGT+GGG - chr2_1:55632453-55632472 None:intergenic 50.0%
!! GGGTAGGTGGATTGTCGTTT+AGG - chr2_1:55632577-55632596 None:intergenic 50.0%
! TTTTGGACGGATGTGTGGGT+AGG - chr2_1:55632593-55632612 None:intergenic 50.0%
!! TATATCCGCTTTGAGGGAGG+AGG - chr2_1:55632669-55632688 None:intergenic 50.0%
!! GGATATATCCGCTTTGAGGG+AGG - chr2_1:55632672-55632691 None:intergenic 50.0%
GGAGGGATATATCCGCTTTG+AGG - chr2_1:55632676-55632695 None:intergenic 50.0%
!! GTGAGGTTTCAAGTTGGTGG+AGG - chr2_1:55632694-55632713 None:intergenic 50.0%
AGCGAGATATGGAGTAGAGG+GGG - chr2_1:55632741-55632760 None:intergenic 50.0%
CAGCGAGATATGGAGTAGAG+GGG - chr2_1:55632742-55632761 None:intergenic 50.0%
GCAGCGAGATATGGAGTAGA+GGG - chr2_1:55632743-55632762 None:intergenic 50.0%
GGTTGTTAGTGGAGAGGGAT+AGG - chr2_1:55632784-55632803 None:intergenic 50.0%
CTGGAGGTTGTTAGTGGAGA+GGG - chr2_1:55632789-55632808 None:intergenic 50.0%
!! AGTCAGGAGGTTGGTGGTTT+GGG - chr2_1:55632860-55632879 None:intergenic 50.0%
!! AAGTCAGGAGGTTGGTGGTT+TGG - chr2_1:55632861-55632880 None:intergenic 50.0%
!!! AATTTTTTTTGGGGGGGGGG+GGG - chr2_1:55632942-55632961 None:intergenic 50.0%
CAAGACCAAACGACCACCAA+AGG + chr2_1:55633061-55633080 Msa0213080:intron 50.0%
! CTTGTCCTTTGGTGGTCGTT+TGG - chr2_1:55633069-55633088 None:intergenic 50.0%
!!! ATGCTCGTCGGTTGGCTTTT+TGG - chr2_1:55633145-55633164 None:intergenic 50.0%
CGACGAGCATTACCACCAAT+AGG + chr2_1:55633155-55633174 Msa0213080:intron 50.0%
AGCTTGGACCAAGAGATGCA+TGG + chr2_1:55635657-55635676 Msa0213080:CDS 50.0%
ACCGAGGGTCTAATCAACGG+TGG + chr2_1:55630123-55630142 Msa0213080:intron 55.0%
! GGAGGGAAGCACGTACTTCT+TGG - chr2_1:55630285-55630304 None:intergenic 55.0%
!! CTGGGAAGGCCATTTTGAGG+TGG - chr2_1:55631636-55631655 None:intergenic 55.0%
!! GTGCTGGGAAGGCCATTTTG+AGG - chr2_1:55631639-55631658 None:intergenic 55.0%
TAGCACAGCTTGTGCTGGGA+AGG - chr2_1:55631650-55631669 None:intergenic 55.0%
TTCCCAGCACAAGCTGTGCT+AGG + chr2_1:55631649-55631668 Msa0213080:intron 55.0%
TCCCAGCACAAGCTGTGCTA+GGG + chr2_1:55631650-55631669 Msa0213080:intron 55.0%
TCCCTAGCACAGCTTGTGCT+GGG - chr2_1:55631654-55631673 None:intergenic 55.0%
TTCCCTAGCACAGCTTGTGC+TGG - chr2_1:55631655-55631674 None:intergenic 55.0%
GTATTGCGTTGGAGGCTGTG+AGG - chr2_1:55632141-55632160 None:intergenic 55.0%
TCTATCCCGAAACAGACGCC+AGG + chr2_1:55632214-55632233 Msa0213080:intron 55.0%
TTGTGCCATAGAGAGGACGC+AGG + chr2_1:55632266-55632285 Msa0213080:intron 55.0%
GGCACCACTTGTTCGACATG+AGG + chr2_1:55632287-55632306 Msa0213080:intron 55.0%
AGGAGTTAGTGGGGGAGCTT+AGG - chr2_1:55632427-55632446 None:intergenic 55.0%
GTGGGAAGAGGAGTTAGTGG+GGG - chr2_1:55632435-55632454 None:intergenic 55.0%
CGTGGGAAGAGGAGTTAGTG+GGG - chr2_1:55632436-55632455 None:intergenic 55.0%
GCGTGGGAAGAGGAGTTAGT+GGG - chr2_1:55632437-55632456 None:intergenic 55.0%
TGCGTGGGAAGAGGAGTTAG+TGG - chr2_1:55632438-55632457 None:intergenic 55.0%
! GGAGGCGAAGTTTGTTTGCG+TGG - chr2_1:55632454-55632473 None:intergenic 55.0%
!! TCTTTAGGGTGGGGGGTAGA+GGG - chr2_1:55632491-55632510 None:intergenic 55.0%
!! TTCTTTAGGGTGGGGGGTAG+AGG - chr2_1:55632492-55632511 None:intergenic 55.0%
!! GCCGTGAGGTTTCAAGTTGG+TGG - chr2_1:55632697-55632716 None:intergenic 55.0%
! GTGGCCGTGAGGTTTCAAGT+TGG - chr2_1:55632700-55632719 None:intergenic 55.0%
GATATGGAGTAGAGGGGGGT+CGG - chr2_1:55632736-55632755 None:intergenic 55.0%
GCGAGATATGGAGTAGAGGG+GGG - chr2_1:55632740-55632759 None:intergenic 55.0%
GGCAGCGAGATATGGAGTAG+AGG - chr2_1:55632744-55632763 None:intergenic 55.0%
!! AGGGTGTTGGCAGCGAGATA+TGG - chr2_1:55632752-55632771 None:intergenic 55.0%
GCTGGAGGTTGTTAGTGGAG+AGG - chr2_1:55632790-55632809 None:intergenic 55.0%
! GTGGTGCTGGAGGTTGTTAG+TGG - chr2_1:55632795-55632814 None:intergenic 55.0%
! TGTTAGGGAAGTGGTGCTGG+AGG - chr2_1:55632805-55632824 None:intergenic 55.0%
CTCTGTTAGGGAAGTGGTGC+TGG - chr2_1:55632808-55632827 None:intergenic 55.0%
!! AGGTTGGTGGTTTGGGGGTA+AGG - chr2_1:55632853-55632872 None:intergenic 55.0%
!! TCAGGAGGTTGGTGGTTTGG+GGG - chr2_1:55632858-55632877 None:intergenic 55.0%
!! GTCAGGAGGTTGGTGGTTTG+GGG - chr2_1:55632859-55632878 None:intergenic 55.0%
TGTCGAAGTCAGGAGGTTGG+TGG - chr2_1:55632866-55632885 None:intergenic 55.0%
!!! ATTTTTTTTGGGGGGGGGGG+GGG - chr2_1:55632941-55632960 None:intergenic 55.0%
! TGGTGGTAATGCTCGTCGGT+TGG - chr2_1:55633153-55633172 None:intergenic 55.0%
! AGAGCTGGGTATGGCGGAGA+CGG + chr2_1:55628366-55628385 Msa0213080:intron 60.0%
CGGCGGTGAGAAGAAGATCG+CGG + chr2_1:55628396-55628415 Msa0213080:intron 60.0%
! ACGGACTAAGCCACCAACCG+TGG + chr2_1:55631787-55631806 Msa0213080:intron 60.0%
TGGTGCCTGCGTCCTCTCTA+TGG - chr2_1:55632274-55632293 None:intergenic 60.0%
TGGACGGATGTGTGGGTAGG+TGG - chr2_1:55632590-55632609 None:intergenic 60.0%
CCACTCCTCCTCCCTCAAAG+CGG + chr2_1:55632661-55632680 Msa0213080:intron 60.0%
GGTCGGTTGTCTGTAGGTGG+TGG - chr2_1:55632719-55632738 None:intergenic 60.0%
!!! TTTTTTTTGGGGGGGGGGGG+GGG - chr2_1:55632940-55632959 None:intergenic 60.0%
CGTACACAGGCAGCGACGAT+AGG + chr2_1:55633027-55633046 Msa0213080:intron 60.0%
! ATGGCGGAGACGGCGAGGTA+CGG + chr2_1:55628376-55628395 Msa0213080:intron 65.0%
TAGAGGGTGGTGCGTGGAGG+TGG - chr2_1:55632475-55632494 None:intergenic 65.0%
TTAGGGTGGGGGGTAGAGGG+TGG - chr2_1:55632488-55632507 None:intergenic 65.0%
!! CCGCTTTGAGGGAGGAGGAG+TGG - chr2_1:55632664-55632683 None:intergenic 65.0%
! GTCTGTAGGTGGTGGCCGTG+AGG - chr2_1:55632711-55632730 None:intergenic 65.0%
GGGGGTCGGTTGTCTGTAGG+TGG - chr2_1:55632722-55632741 None:intergenic 65.0%
GAGGGGGGTCGGTTGTCTGT+AGG - chr2_1:55632725-55632744 None:intergenic 65.0%
!!! TTTTTTTGGGGGGGGGGGGG+GGG - chr2_1:55632939-55632958 None:intergenic 65.0%
! TGGGTATGGCGGAGACGGCG+AGG + chr2_1:55628371-55628390 Msa0213080:intron 70.0%
AGGGTGGTGCGTGGAGGTGG+AGG - chr2_1:55632472-55632491 None:intergenic 70.0%
GGGTAGAGGGTGGTGCGTGG+AGG - chr2_1:55632478-55632497 None:intergenic 70.0%
! GGGGGGGGAGTGTAGACCAC+AGG - chr2_1:55632919-55632938 None:intergenic 70.0%
!!! TTTTTTGGGGGGGGGGGGGG+GGG - chr2_1:55632938-55632957 None:intergenic 70.0%
GCGGAGACGGCGAGGTACGG+CGG + chr2_1:55628379-55628398 Msa0213080:intron 75.0%
GGGGGGTAGAGGGTGGTGCG+TGG - chr2_1:55632481-55632500 None:intergenic 75.0%
!! TTTTTGGGGGGGGGGGGGGG+GGG - chr2_1:55632937-55632956 None:intergenic 75.0%
!!! TTTTGGGGGGGGGGGGGGGG+GGG - chr2_1:55632936-55632955 None:intergenic 80.0%
! TTTGGGGGGGGGGGGGGGGG+GGG - chr2_1:55632935-55632954 None:intergenic 85.0%
! TTGGGGGGGGGGGGGGGGGG+GGG - chr2_1:55632934-55632953 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 55628260 55635768 55628260 ID=Msa0213080;Name=Msa0213080
chr2_1 mRNA 55628260 55635768 55628260 ID=Msa0213080-mRNA-1;Parent=Msa0213080;Name=Msa0213080-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|0.75|0.66|0.5|4|0|328
chr2_1 exon 55628260 55628373 55628260 ID=Msa0213080-mRNA-1:exon:15444;Parent=Msa0213080-mRNA-1
chr2_1 exon 55629446 55629622 55629446 ID=Msa0213080-mRNA-1:exon:15445;Parent=Msa0213080-mRNA-1
chr2_1 exon 55634368 55634718 55634368 ID=Msa0213080-mRNA-1:exon:15446;Parent=Msa0213080-mRNA-1
chr2_1 exon 55635424 55635768 55635424 ID=Msa0213080-mRNA-1:exon:15447;Parent=Msa0213080-mRNA-1
chr2_1 CDS 55628260 55628373 55628260 ID=Msa0213080-mRNA-1:cds;Parent=Msa0213080-mRNA-1
chr2_1 CDS 55629446 55629622 55629446 ID=Msa0213080-mRNA-1:cds;Parent=Msa0213080-mRNA-1
chr2_1 CDS 55634368 55634718 55634368 ID=Msa0213080-mRNA-1:cds;Parent=Msa0213080-mRNA-1
chr2_1 CDS 55635424 55635768 55635424 ID=Msa0213080-mRNA-1:cds;Parent=Msa0213080-mRNA-1
Gene Sequence

>Msa0213080

ATGCAAGCAATAACCCTAACCCTAATTCAATTTACACATGCAAATTCTGAAGGAGACACTCTTTACACACTCAAACGAAGCCTCACCGATCCTGATAATGTTCTTCAGAGCTGGATGAATCCAATTCATAAGAAGATTCCAGTTCTTATCCATAATGGTAAATCCATTTGTGAATCTGCAATTATTGTGCAATACATAGATGAAGTTTGGAATGATAAAGCTTCATTCATGCCTTCTAATCCTTATGAGAGAGCTCAAGCTAGATTTTGGGTTGATTATAGTGACAAAAAGCCAGTTCTCACTAGACAACTTAGGATTTTTACAATCATGGCGAACGAGGTAATTCTGTTAGATACATGGGCTAGCATGTTTGGTATGAGAGCAAGAATTGCATTAGCTGAAAAGAGTGTCAAATATGAGTACAAAGAAGAAGATCTTAGAAATAAGAGTCCTTTACTTCTTCAGATGAATCCAATTCATAAGAAGATTCCAGTTCTTATCCATAATGGAAAATCCATTTGTGAATCTGCAATTATTGTGCAATACATAGATGAAGTTTGGAATAATAAAGCTTCATTCATGCCTTCTAATCCTTATGAGAGAGCTCAAGCTAGATTTTGGGTTGATTATAGTGACAAAAAGGTTTATGACACTTGGAAGAAAATGTGGCTTTCAAAAGGAGAAGAATATGAGGAAGGGAAGATGGAATTGATCTCTATCTTTAAGACACTAGAGGGTGTATTGAGTGACAAGCTTTTTTATGGTGGTGACACATTTGGGTTTCTTGATATTGGTTTGATTCCTTTTTATAGCTGGTTTTATGCTTTTGAGACATATGGCAACTTCAAAATGGAAACGGAGTGTCCTAAACTAATAGCTTGGACCAAGAGATGCATGGAGAGAGATAGTGTGTCAAAATCTCTTCCTGATCAGAAGAAAGTGTATGATTTTGTTGTGAGCATTAAGAAAGTACTTGGATTGGATTAG
Protein sequence

>Msa0213080

MQAITLTLIQFTHANSEGDTLYTLKRSLTDPDNVLQSWMNPIHKKIPVLIHNGKSICESAIIVQYIDEVWNDKASFMPSNPYERAQARFWVDYSDKKPVLTRQLRIFTIMANEVILLDTWASMFGMRARIALAEKSVKYEYKEEDLRNKSPLLLQMNPIHKKIPVLIHNGKSICESAIIVQYIDEVWNNKASFMPSNPYERAQARFWVDYSDKKVYDTWKKMWLSKGEEYEEGKMELISIFKTLEGVLSDKLFYGGDTFGFLDIGLIPFYSWFYAFETYGNFKMETECPKLIAWTKRCMERDSVSKSLPDQKKVYDFVVSIKKVLGLD*