AlfalfaGEDB | Msa0189030

M. sativa cultivar zhongmu-4 / Msa0189030

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF19160.3

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0189030	XP_013462390.1	98.370	552	9	0	1	552	93	644	0.0	1130

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0189030	sp\|O04086\|Y1105_ARATH	65.000	560	163	7	1	552	91	625	0.0	714

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0189030	A0A072VE54	98.370	552	9	0	1	552	93	644	0.0	1130

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004840	Msa0189030	0.815366	9.589908e-52	-8.615850e-47
Msa0005270	Msa0189030	0.800694	1.277741e-48	-8.615850e-47
Msa0007440	Msa0189030	0.808041	3.762958e-50	-8.615850e-47
Msa0007470	Msa0189030	0.828611	8.166194e-55	-8.615850e-47
Msa0012710	Msa0189030	0.819267	1.270162e-52	-8.615850e-47
Msa0015090	Msa0189030	0.857980	1.127599e-62	-8.615850e-47
Msa0017320	Msa0189030	0.849552	3.004471e-60	-8.615850e-47
Msa0020410	Msa0189030	0.806511	7.939736e-50	-8.615850e-47
Msa0023330	Msa0189030	0.815435	9.256867e-52	-8.615850e-47
Msa0023480	Msa0189030	0.807148	5.823580e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0189030	MtrunA17_Chr2g0277731	98.370	552	9	0	1	552	93	644	0.0	1130
Msa0189030	MtrunA17_Chr8g0380681	65.784	529	174	5	1	528	99	621	0.0	694
Msa0189030	MtrunA17_Chr8g0380681	58.178	538	200	8	1	528	767	1289	0.0	603
Msa0189030	MtrunA17_Chr1g0159611	60.982	387	126	9	145	531	179	540	1.09e-155	456
Msa0189030	MtrunA17_Chr7g0259211	40.650	492	259	13	34	519	112	576	3.17e-108	338
Msa0189030	MtrunA17_Chr1g0196391	51.376	327	141	6	194	519	278	587	5.68e-104	326
Msa0189030	MtrunA17_Chr4g0039131	90.977	133	11	1	1	133	1	132	6.61e-78	242
Msa0189030	MtrunA17_Chr7g0226891	41.642	341	171	9	197	535	35	349	4.78e-77	248
Msa0189030	MtrunA17_Chr2g0278831	41.787	347	163	7	169	506	254	570	1.81e-75	251
Msa0189030	MtrunA17_Chr5g0413171	37.731	379	209	7	157	534	42	394	3.69e-75	244

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0189030	AT1G11050.1	65.000	560	163	7	1	552	91	625	0.0	714
Msa0189030	AT2G48010.1	42.105	494	250	12	34	519	109	574	2.41e-114	352
Msa0189030	AT1G29720.1	42.154	325	166	4	197	521	658	960	8.27e-77	262
Msa0189030	AT1G60800.2	41.026	351	176	8	158	506	189	510	5.24e-76	251
Msa0189030	AT1G60800.1	41.026	351	176	8	158	506	256	577	4.42e-75	250
Msa0189030	AT1G70530.1	38.325	394	205	10	130	522	252	608	1.32e-74	249
Msa0189030	AT1G56145.3	37.647	425	213	12	109	526	496	875	2.66e-74	254
Msa0189030	AT5G45780.2	38.579	394	206	9	119	508	173	534	3.71e-74	246
Msa0189030	AT1G29730.1	43.789	322	159	5	195	516	625	924	4.04e-74	254
Msa0189030	AT1G56145.1	37.647	425	213	12	109	526	599	978	7.69e-74	254

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Find 128 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTTTCCATTATGCTCTT+AGG	0.269768	2_1:+4289533	None:intergenic
AACTCACGGATACCTAGCGC+CGG	0.639614	2_1:-4289780	Msa0189030:CDS
AAGAATTTCATAGGGAGAGG+TGG	0.545332	2_1:-4290301	Msa0189030:CDS
AAGAGTGATGTATACAGCTT+TGG	0.525424	2_1:-4289728	Msa0189030:CDS
AAGCAAACAAATCATTGTCT+TGG	0.480711	2_1:-4290003	Msa0189030:CDS
AAGGTTCTAGGCGTAGGTTG+AGG	0.630785	2_1:-4290390	Msa0189030:CDS
AAGTTCCTCAAATTCCAGAT+AGG	0.461563	2_1:-4289421	Msa0189030:CDS
AATGAGAATTATGGTGATAA+AGG	0.351808	2_1:-4290106	Msa0189030:CDS
AATTCTATGTTCTCATGTAA+TGG	0.453868	2_1:-4289498	Msa0189030:CDS
AATTTGAGGCCGCTTAATGC+CGG	0.533332	2_1:+4289332	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGAGATAACAAATTGAAGA+GGG	+	chr2_1:4289378-4289397	None:intergenic	30.0%
GTATTGAAACTGTTCATGAT+TGG	-	chr2_1:4289413-4289432	Msa0189030:CDS	30.0%
TTACCTGTTTATTCACAAGT+TGG	-	chr2_1:4289673-4289692	Msa0189030:CDS	30.0%
GTCAATTTGGTACAAAATTC+AGG	-	chr2_1:4289894-4289913	Msa0189030:CDS	30.0%
TTGGCATGTAATCATAAACA+AGG	+	chr2_1:4290182-4290201	None:intergenic	30.0%
GTTTATGATTACATGCCAAA+TGG	-	chr2_1:4290183-4290202	Msa0189030:CDS	30.0%
AAGCAAACAAATCATTGTCT+TGG	-	chr2_1:4290247-4290266	Msa0189030:CDS	30.0%
TTAAGCCTGCAATTTATCAT+AGG	-	chr2_1:4290331-4290350	Msa0189030:CDS	30.0%
TAAGCCTGCAATTTATCATA+GGG	-	chr2_1:4290332-4290351	Msa0189030:CDS	30.0%
ATATCCCTATGATAAATTGC+AGG	+	chr2_1:4290339-4290358	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	4289307	4290965	4289307	ID=Msa0189030;Name=Msa0189030
chr2_1	mRNA	4289307	4290965	4289307	ID=Msa0189030-mRNA-1;Parent=Msa0189030;Name=Msa0189030-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|552
chr2_1	exon	4289307	4290965	4289307	ID=Msa0189030-mRNA-1:exon:1958;Parent=Msa0189030-mRNA-1
chr2_1	CDS	4289307	4290965	4289307	ID=Msa0189030-mRNA-1:cds;Parent=Msa0189030-mRNA-1

Gene Sequence

>Msa0189030

ATGCAAGATTTTCAATCAAAGCTTAACTCTTTATCACTTTACAACAACTTGGTCAACTCTTGTTTTGACCCTCTTCAATTTGTTATCTCTCGTAACATATGTGCAGGTATTGAAACTGTTCATGATTGGAATGAGAAAGTGGGTCAGAATTCATCTTTGAATACTGCTTGCAAACCAGATCTCACTGATCTTTCTCTGTGTGATGTCTGTGTTTCTGCTGGATTACAGGTTAAGCAGAAGCTTGTTTCAATTAGTGGTAATTCTTCTCAGTCATTGAGTTGTTTTTACTTTGCAATTCTTTATGCTGCTGGAATTGTGAATGAGTTTGGACCTGAAAGTAATGGTGCTGTTACTTGTGCTTTTAGTTTACCTGTTTATTCACAAGTTGGTTCTGGTTCAAAGGGTCATCAGGGTCTTGTGTTTGGGTTAACAGGAGCTGGTGTTGCTTTGTTTGTTATGTGTTCTTTGTTGGGTTTATACGTTTGGTGTGATAGGAAACGTATGAGGAAGAGAAAGCTTGAAACTTTTCAATTTGATTTTGATCCTGAGGAACAAGGTTCTAGGCGTAGGTTGAGGCCTAATACAGGGTCAATTTGGTACAAAATTCAGGAACTTGAGAAAGCTACTGATAATTTTTCATCCAAGAATTTCATAGGGAGAGGTGGGTTTGGTTTGGTTTTCAAAGGAACTTTGGCTGATGGATCTGTTGTTGCTGTTAAGAGGGTTTTAGAATCTGATTTTCAAGGGGATGTTGAGTTTTGTAATGAGGTTGAGATAATTAGTAATTTGAAGCACAGGAATCTGTTACCTCTTAGAGGTTGTTGTGTGGTTGATGAAAATGAGAATTATGGTGATAAAGGAAGTCAAAGATACCTTGTTTATGATTACATGCCAAATGGAAACTTGGAAGATCATCTTTTTGTATCAAAGGATCCTAAAAAAGCAAACAAATCATTGTCTTGGCCTCTTCGAAAAAACATAATCTTGGATGTCGGAAAAGGGTTGGCTTATTTACACTATGGAGTTAAGCCTGCAATTTATCATAGGGATATCAAAGCTACCAATATACTACTTGATGAAGATATGAGGGCAAGAGTTGCTGATTTTGGTCTTGCTAAACAAAGTAGGGAGGGTCAGTCTCATCTCACTACTAGAGTGGCCGGAACTCACGGATACCTAGCGCCGGAATATGCGCTCTATGGTCAGCTGACTGAGAAGAGTGATGTATACAGCTTTGGTGTGGTTGTTTTGGAGATAATGTGTGGTAGGAAGGCTCTTGATTTGTCCTCATCGGGCTCTCCGCGAGCGTTCTTGATCACGGATTGGGCTTGGTCGTTGGTGAAATCGGGGAAAATAAACGAGGCTTTGGATGCTTCTCTTCTGAAAGATGATAACACTGCTAGTGCAAATCCTAAGAGCATAATGGAAAGGTTTTTGCTTGTTGGAATTCTATGTTCTCATGTAATGGTTGCTTTGAGGCCAACAATTTCCGATGCTTTGAAGATGTTGGAAGGGGATATTGAAGTTCCTCAAATTCCAGATAGGCCTATGCCTCTTGGCCATCCTGCATTTTATAATAACGATGGCAACGGCAACACTTTTAGCATATCTCCGGCATTAAGCGGCCTCAAATTGCCCGCTGGCGACATGCTCAGGTAA

Protein sequence

>Msa0189030

MQDFQSKLNSLSLYNNLVNSCFDPLQFVISRNICAGIETVHDWNEKVGQNSSLNTACKPDLTDLSLCDVCVSAGLQVKQKLVSISGNSSQSLSCFYFAILYAAGIVNEFGPESNGAVTCAFSLPVYSQVGSGSKGHQGLVFGLTGAGVALFVMCSLLGLYVWCDRKRMRKRKLETFQFDFDPEEQGSRRRLRPNTGSIWYKIQELEKATDNFSSKNFIGRGGFGLVFKGTLADGSVVAVKRVLESDFQGDVEFCNEVEIISNLKHRNLLPLRGCCVVDENENYGDKGSQRYLVYDYMPNGNLEDHLFVSKDPKKANKSLSWPLRKNIILDVGKGLAYLHYGVKPAIYHRDIKATNILLDEDMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKSGKINEALDASLLKDDNTASANPKSIMERFLLVGILCSHVMVALRPTISDALKMLEGDIEVPQIPDRPMPLGHPAFYNNDGNGNTFSISPALSGLKLPAGDMLR*