AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0959400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0959400 MtrunA17_Chr7g0236991 69.424 556 167 1 1 556 1 553 0.0 821
Msa0959400 MtrunA17_Chr7g0237001 69.245 556 168 1 1 556 1 553 0.0 819
Msa0959400 MtrunA17_Chr7g0237041 69.245 556 168 1 1 556 1 553 0.0 819
Msa0959400 MtrunA17_Chr7g0237081 69.245 556 168 1 1 556 1 553 0.0 819
Msa0959400 MtrunA17_Chr7g0237051 69.245 556 168 1 1 556 1 553 0.0 819
Msa0959400 MtrunA17_Chr6g0466051 69.245 556 168 1 1 556 1 553 0.0 813
Msa0959400 MtrunA17_Chr6g0465911 69.065 556 169 1 1 556 1 553 0.0 811
Msa0959400 MtrunA17_Chr5g0425371 69.065 556 169 1 1 556 1 553 0.0 808
Msa0959400 MtrunA17_Chr6g0465441 67.446 556 178 1 1 556 1 553 0.0 795
Msa0959400 MtrunA17_Chr6g0451711 66.427 557 186 1 1 556 1 557 0.0 785
Msa0959400 MtrunA17_Chr3g0105071 66.607 557 185 1 1 556 1 557 0.0 783
Msa0959400 MtrunA17_Chr4g0024691 66.545 550 184 0 7 556 12 561 0.0 773
Msa0959400 MtrunA17_Chr3g0082691 66.484 546 182 1 12 556 8 553 0.0 771
Msa0959400 MtrunA17_Chr6g0465851 69.884 518 156 0 39 556 1 518 0.0 764
Msa0959400 MtrunA17_Chr5g0431571 67.279 544 177 1 12 554 4 547 0.0 756
Msa0959400 MtrunA17_Chr5g0431651 65.934 546 184 2 13 556 7 552 0.0 753
Msa0959400 MtrunA17_Chr7g0236961 70.080 498 149 0 59 556 1 498 0.0 749
Msa0959400 MtrunA17_Chr7g0237011 70.080 498 149 0 59 556 1 498 0.0 748
Msa0959400 MtrunA17_Chr4g0042111 58.000 550 228 2 9 556 14 562 0.0 671
Msa0959400 MtrunA17_Chr7g0236971 68.828 401 125 0 156 556 1 401 0.0 596
Msa0959400 MtrunA17_Chr6g0465981 71.809 376 103 1 1 376 1 373 0.0 565
Msa0959400 MtrunA17_Chr6g0465871 71.809 376 103 1 1 376 1 373 0.0 565
Msa0959400 MtrunA17_Chr6g0466081 71.809 376 103 1 1 376 1 373 0.0 565
Msa0959400 MtrunA17_Chr6g0466111 73.373 338 90 0 39 376 1 338 0.0 518
Msa0959400 MtrunA17_Chr6g0465931 73.077 338 91 0 39 376 1 338 0.0 514
Msa0959400 MtrunA17_Chr2g0319041 45.073 548 293 8 15 556 12 557 1.53e-171 497
Msa0959400 MtrunA17_Chr7g0236951 72.524 313 86 0 59 371 1 313 5.16e-171 486
Msa0959400 MtrunA17_Chr7g0237031 72.524 313 86 0 59 371 1 313 2.33e-170 485
Msa0959400 MtrunA17_Chr8g0336181 44.909 550 295 6 13 556 9 556 2.39e-169 491
Msa0959400 MtrunA17_Chr2g0319051 43.665 513 283 6 48 556 4 514 1.95e-158 462
Msa0959400 MtrunA17_Chr4g0008621 44.750 400 217 4 15 410 19 418 7.00e-120 360
Msa0959400 MtrunA17_Chr6g0466031 64.231 260 93 0 297 556 1 260 2.64e-119 352
Msa0959400 MtrunA17_Chr5g0445511 65.690 239 82 0 151 389 1 239 2.02e-113 337
Msa0959400 MtrunA17_Chr4g0023911 34.432 546 347 4 13 554 41 579 5.03e-112 345
Msa0959400 MtrunA17_Chr2g0319071 36.561 506 271 10 53 554 28 487 1.41e-111 341
Msa0959400 MtrunA17_Chr7g0237061 61.154 260 78 2 297 556 1 237 5.63e-107 320
Msa0959400 MtrunA17_Chr2g0310331 36.599 541 331 8 17 554 53 584 1.26e-105 329
Msa0959400 MtrunA17_Chr6g0466021 70.588 204 57 1 1 204 1 201 6.64e-100 300
Msa0959400 MtrunA17_Chr7g0237071 70.297 202 60 0 59 260 1 202 2.10e-97 295
Msa0959400 MtrunA17_Chr2g0323151 35.256 468 288 4 71 534 4 460 3.96e-97 303
Msa0959400 MtrunA17_Chr2g0323131 34.216 491 306 6 49 534 67 545 7.42e-97 305
Msa0959400 MtrunA17_Chr8g0357411 33.272 547 356 5 10 554 48 587 3.45e-95 302
Msa0959400 MtrunA17_Chr4g0048921 33.010 515 332 6 44 554 64 569 1.05e-86 279
Msa0959400 MtrunA17_Chr7g0237021 68.023 172 55 0 385 556 1 172 4.28e-83 256
Msa0959400 MtrunA17_Chr7g0236941 68.023 172 55 0 385 556 1 172 4.28e-83 256
Msa0959400 MtrunA17_Chr4g0048911 30.677 502 334 7 55 548 61 556 3.31e-79 259
Msa0959400 MtrunA17_Chr5g0445501 63.372 172 63 0 385 556 1 172 2.27e-76 239
Msa0959400 MtrunA17_Chr6g0465941 63.372 172 63 0 385 556 1 172 2.42e-76 239
Msa0959400 MtrunA17_Chr6g0466121 63.372 172 63 0 385 556 1 172 2.42e-76 239
Msa0959400 MtrunA17_Chr6g0465991 63.372 172 63 0 385 556 1 172 2.42e-76 239
Msa0959400 MtrunA17_Chr6g0466091 63.372 172 63 0 385 556 1 172 2.42e-76 239
Msa0959400 MtrunA17_Chr6g0465881 62.791 172 64 0 385 556 1 172 1.40e-75 237
Msa0959400 MtrunA17_Chr2g0319081 39.144 327 177 8 233 556 120 427 8.13e-74 241
Msa0959400 MtrunA17_Chr2g0319081 40.984 122 71 1 15 135 19 140 1.54e-23 103
Msa0959400 MtrunA17_Chr2g0310401 32.477 428 284 4 130 554 5 430 5.25e-70 231
Msa0959400 MtrunA17_Chr2g0280581 28.958 518 343 8 47 547 9 518 7.20e-70 233
Msa0959400 MtrunA17_Chr7g0236921 63.924 158 53 1 403 556 1 158 3.21e-69 220
Msa0959400 MtrunA17_Chr3g0108941 28.713 505 348 9 54 550 13 513 8.86e-66 223
Msa0959400 MtrunA17_Chr3g0105691 29.363 487 337 6 54 534 46 531 6.30e-65 221
Msa0959400 MtrunA17_Chr3g0109031 29.072 485 331 8 54 529 13 493 3.14e-64 218
Msa0959400 MtrunA17_Chr7g0236931 61.039 154 57 1 403 556 1 151 1.07e-63 205
Msa0959400 MtrunA17_Chr3g0109021 29.278 485 330 8 54 529 13 493 1.09e-63 217
Msa0959400 MtrunA17_Chr3g0109001 29.012 486 331 8 54 529 13 494 2.49e-63 216
Msa0959400 MtrunA17_Chr3g0108981 28.970 466 320 5 73 529 6 469 1.31e-62 213
Msa0959400 MtrunA17_Chr3g0108961 28.970 466 320 5 73 529 6 469 1.31e-62 213
Msa0959400 MtrunA17_Chr6g0477111 28.571 476 328 7 73 539 6 478 1.92e-62 213
Msa0959400 MtrunA17_Chr3g0099031 29.167 504 346 9 54 550 13 512 2.77e-62 213
Msa0959400 MtrunA17_Chr3g0108991 28.571 483 336 8 54 529 13 493 2.19e-61 211
Msa0959400 MtrunA17_Chr3g0108951 28.571 483 336 8 54 529 13 493 2.19e-61 211
Msa0959400 MtrunA17_Chr3g0108971 28.448 464 324 7 73 529 6 468 1.99e-60 207
Msa0959400 MtrunA17_Chr3g0109011 28.326 466 322 7 73 529 6 468 4.46e-60 207
Msa0959400 MtrunA17_Chr7g0236981 67.407 135 41 1 1 135 1 132 1.31e-58 191
Msa0959400 MtrunA17_Chr7g0233861 65.185 135 38 1 196 330 33 158 2.47e-53 179
Msa0959400 MtrunA17_Chr6g0477121 28.395 405 279 6 133 529 10 411 4.11e-53 186
Msa0959400 MtrunA17_Chr7g0217361 32.000 300 203 1 255 553 8 307 1.27e-45 162
Msa0959400 MtrunA17_Chr8g0357221 36.546 249 151 3 10 257 48 290 2.71e-41 150
Msa0959400 MtrunA17_Chr5g0445521 66.327 98 33 0 1 98 1 98 1.54e-40 142
Msa0959400 MtrunA17_Chr3g0101681 26.204 519 337 16 69 554 275 780 2.89e-36 144
Msa0959400 MtrunA17_Chr5g0445401 68.421 95 26 2 166 257 1 94 1.19e-33 123
Msa0959400 MtrunA17_Chr2g0310121 23.901 523 344 16 69 554 274 779 3.35e-33 135
Msa0959400 MtrunA17_Chr3g0082711 50.000 116 41 1 441 556 1 99 8.14e-33 121
Msa0959400 MtrunA17_Chr8g0357231 28.682 258 182 2 298 554 1 257 3.50e-32 124
Msa0959400 MtrunA17_Chr7g0259881 27.407 270 164 6 73 313 232 498 1.21e-23 105
Msa0959400 MtrunA17_Chr7g0218001 29.740 269 157 6 73 310 349 616 6.17e-23 103
Msa0959400 MtrunA17_Chr7g0217351 29.954 217 143 5 46 258 62 273 1.17e-20 92.8
Msa0959400 MtrunA17_Chr2g0281651 24.272 309 221 8 233 535 43 344 2.00e-18 87.8
Msa0959400 MtrunA17_Chr7g0218041 30.380 237 140 6 120 332 3 238 8.10e-14 73.6
Msa0959400 MtrunA17_Chr2g0310411 32.787 122 74 3 10 131 51 164 5.04e-13 67.4
Msa0959400 MtrunA17_Chr4g0008631 37.349 83 50 2 475 556 1 82 2.81e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0959400 AT5G23960.2 37.912 546 334 4 13 556 3 545 6.32e-143 424
Msa0959400 AT5G23960.1 37.887 549 332 6 13 556 3 547 1.34e-141 421
Msa0959400 AT1G70080.1 36.625 557 343 7 8 556 57 611 1.52e-127 387
Msa0959400 AT3G14490.1 36.929 547 333 7 17 556 60 601 8.75e-122 371
Msa0959400 AT3G14520.1 35.675 541 338 5 22 556 68 604 1.81e-120 368
Msa0959400 AT1G31950.3 35.219 548 332 6 22 556 70 607 9.62e-119 364
Msa0959400 AT1G31950.1 35.490 541 339 5 22 556 70 606 5.86e-118 362
Msa0959400 AT3G14540.1 35.741 540 339 4 22 556 65 601 2.12e-117 360
Msa0959400 AT5G44630.1 34.854 548 340 7 18 554 14 555 1.04e-113 349
Msa0959400 AT3G29410.1 34.622 543 349 5 17 556 64 603 1.17e-112 348
Msa0959400 AT4G20210.1 33.942 548 349 7 17 556 58 600 1.74e-112 347
Msa0959400 AT3G32030.1 33.704 540 350 6 22 556 68 604 9.48e-112 345
Msa0959400 AT1G33750.1 33.645 535 349 4 24 556 73 603 1.77e-110 342
Msa0959400 AT4G13300.1 34.508 539 342 7 25 556 20 554 4.81e-109 337
Msa0959400 AT3G29410.2 35.378 489 312 3 70 556 12 498 2.06e-108 333
Msa0959400 AT4G20200.1 34.774 532 314 10 47 556 84 604 5.07e-108 336
Msa0959400 AT4G15870.1 34.011 541 331 9 25 556 75 598 2.59e-104 326
Msa0959400 AT4G13280.2 33.892 537 344 7 27 556 22 554 1.23e-103 323
Msa0959400 AT3G29190.1 32.759 522 335 7 45 556 86 601 5.02e-102 320
Msa0959400 AT3G14540.2 37.220 446 273 3 22 463 65 507 3.34e-101 315
Msa0959400 AT1G31950.2 36.667 450 263 5 22 459 70 509 7.81e-101 315
Msa0959400 AT3G29110.1 33.700 546 349 8 17 554 55 595 3.76e-98 310
Msa0959400 AT4G20230.1 32.588 537 348 8 25 552 70 601 4.48e-98 310
Msa0959400 AT4G20230.2 32.588 537 348 8 25 552 82 613 5.00e-98 310
Msa0959400 AT2G23230.2 33.516 546 348 9 16 551 55 595 8.20e-98 310
Msa0959400 AT1G66020.1 31.868 546 363 6 17 556 56 598 1.81e-95 303
Msa0959400 AT2G23230.1 33.333 546 344 10 16 551 55 590 1.98e-95 303
Msa0959400 AT4G13280.1 32.775 537 320 8 27 556 22 524 2.69e-93 295
Msa0959400 AT1G48800.1 31.502 546 358 9 17 552 63 602 7.96e-92 294
Msa0959400 AT4G16730.1 32.239 518 329 9 52 554 27 537 4.97e-91 290
Msa0959400 AT4G16730.2 32.265 499 317 8 73 556 1 493 2.40e-89 284
Msa0959400 AT4G16740.1 31.418 557 357 12 12 556 21 564 1.65e-85 276
Msa0959400 AT2G24210.1 30.714 560 367 11 10 556 39 590 4.04e-84 273
Msa0959400 AT1G61680.1 31.663 499 329 4 54 546 77 569 4.88e-84 272
Msa0959400 AT5G48110.1 37.026 343 211 5 215 556 1 339 5.84e-82 259
Msa0959400 AT1G61680.2 31.263 499 324 5 54 546 77 562 1.29e-80 263
Msa0959400 AT1G48820.1 30.241 539 326 11 17 549 63 557 1.17e-78 258
Msa0959400 AT3G25810.1 28.801 559 375 9 15 556 45 597 6.05e-77 254
Msa0959400 AT3G25820.1 29.590 561 365 13 15 556 45 594 6.88e-77 254
Msa0959400 AT3G25830.1 29.590 561 365 13 15 556 45 594 6.88e-77 254
Msa0959400 AT4G16740.2 34.474 380 230 7 12 381 21 391 9.13e-68 224
Msa0959400 AT1G66020.2 34.417 369 233 6 17 379 56 421 1.67e-66 222
Msa0959400 AT3G25820.2 31.959 388 241 9 15 389 45 422 4.50e-60 206
Msa0959400 AT4G16740.4 34.862 327 195 6 14 330 23 341 1.67e-57 197
Msa0959400 AT4G16740.3 34.862 327 195 6 14 330 23 341 1.67e-57 197
Msa0959400 AT3G25820.4 32.622 328 200 7 15 330 45 363 1.26e-52 184
Msa0959400 AT3G25820.3 32.622 328 200 7 15 330 45 363 1.26e-52 184
Msa0959400 AT1G79460.1 24.668 527 338 20 69 556 273 779 1.85e-30 127
Msa0959400 AT1G61120.1 23.242 512 357 10 68 556 286 784 1.69e-25 112
Msa0959400 AT4G02780.1 29.412 255 152 5 73 300 334 587 1.88e-22 102

Find 90 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCTTGCTGTGCTATTT+AGG 0.103456 6_3:-76030795 Msa0959400:CDS
TCTACTTGCATTGGCAAAAT+TGG 0.119753 6_3:-76029672 Msa0959400:CDS
TTCTCTTGCTGTGCTATTTA+GGG 0.189824 6_3:-76030794 Msa0959400:CDS
GGTTCATGGTGAAAATATTT+TGG 0.219650 6_3:-76029870 Msa0959400:CDS
TTTCCTTGCTTGAGAATATT+GGG 0.241792 6_3:+76029388 None:intergenic
ATGCAAGTAGAATTTCATTA+TGG 0.248221 6_3:+76029684 None:intergenic
AGAAGAAATTAGTCAAGTTT+TGG 0.262222 6_3:-76030875 Msa0959400:CDS
TACAAGAGTTATGTTCAAAA+TGG 0.269625 6_3:-76030844 Msa0959400:CDS
GTCATCAATGTATGATAAAA+TGG 0.310334 6_3:+76029346 None:intergenic
CAGATTTCCACCCTAGCGTT+TGG 0.311610 6_3:-76031251 Msa0959400:CDS
AGATTTCCACCCTAGCGTTT+GGG 0.325288 6_3:-76031250 Msa0959400:CDS
TGCAAAACCGATTTCTCATT+AGG 0.335406 6_3:+76031285 None:intergenic
TAATTGCTTGGAGGATCTTC+CGG 0.335446 6_3:-76028981 Msa0959400:CDS
CTGCTATTCATTGCAGACTT+AGG 0.335573 6_3:-76027908 Msa0959400:CDS
TGAGGGAATATGATATGAAT+AGG 0.340079 6_3:-76027702 Msa0959400:CDS
TTCCTTGCTCGTCCTTGAAT+TGG 0.345782 6_3:+76029960 None:intergenic
GAGTAGTAGAATGTTGCTTT+TGG 0.347068 6_3:-76029433 Msa0959400:CDS
TGTGCCGCAATATTCATATC+AGG 0.348479 6_3:+76031015 None:intergenic
CTTCAATCCTAATGAGAAAT+CGG 0.354762 6_3:-76031292 Msa0959400:CDS
TCAGTATGCTTCAGAATCTA+TGG 0.376448 6_3:-76031214 Msa0959400:intron
TGCAAGTAGAATTTCATTAT+GGG 0.387262 6_3:+76029685 None:intergenic
CGTACTTGGAATGTTATATG+AGG 0.388936 6_3:-76027720 Msa0959400:CDS
GGATGAATCTTGCTCATAGA+TGG 0.390050 6_3:+76029706 None:intergenic
CAACAAAAGACATCTTTGAT+TGG 0.390973 6_3:-76027962 Msa0959400:CDS
GATTGACTCGATATGTCGTT+TGG 0.393872 6_3:-76030917 Msa0959400:CDS
AGAGCATGTTTCTTCGTACT+TGG 0.400274 6_3:-76027734 Msa0959400:CDS
TAAAGCAACTTCGTGTAATC+CGG 0.404734 6_3:+76028962 None:intergenic
GTTGCTTTATAAATCACTCT+TGG 0.404999 6_3:-76028948 Msa0959400:CDS
TGCTATTCATTGCAGACTTA+GGG 0.421274 6_3:-76027907 Msa0959400:CDS
TGCATGTACTCCGCTGTTGT+TGG 0.426336 6_3:+76028053 None:intergenic
AACAAAAGACATCTTTGATT+GGG 0.428042 6_3:-76027961 Msa0959400:CDS
TAGGTGGGATATTAATTGCT+TGG 0.452782 6_3:-76028993 Msa0959400:CDS
TACGACTTCTTACATTGGAA+TGG 0.454510 6_3:-76027994 Msa0959400:CDS
TAATGAAATTCTACTTGCAT+TGG 0.460272 6_3:-76029681 Msa0959400:CDS
ACGACTTCTTACATTGGAAT+GGG 0.460983 6_3:-76027993 Msa0959400:CDS
TTGCAAGAGAAGGACTCAAT+CGG 0.462800 6_3:+76029801 None:intergenic
TTCTGGTCACCTTCAGTCCA+TGG 0.466911 6_3:-76029828 Msa0959400:CDS
GATGACACATATGATGCATA+TGG 0.467097 6_3:-76029329 Msa0959400:CDS
GAGCAAGAAATGAAGAAAGA+AGG 0.470516 6_3:-76028908 Msa0959400:CDS
GAGGGAATATGATATGAATA+GGG 0.475500 6_3:-76027701 Msa0959400:CDS
AAAAGAAAATAGAAAACGCT+TGG 0.479848 6_3:-76027657 Msa0959400:CDS
CGCTTGGAAAGATATAAATC+AGG 0.485338 6_3:-76027641 Msa0959400:CDS
ATTGACTCGATATGTCGTTT+GGG 0.487347 6_3:-76030916 Msa0959400:CDS
ATAGTTAGCATTCAACCATC+TGG 0.489896 6_3:+76028079 None:intergenic
ATATTGGGGCTCAAAATATA+CGG 0.495144 6_3:+76029403 None:intergenic
CTGTGCTATTTAGGGTGTTG+AGG 0.502767 6_3:-76030786 Msa0959400:CDS
TTGAGAACACACGTCAGAAT+AGG 0.502783 6_3:+76027589 None:intergenic
ATATAGGTGGTGGAAGGAGT+TGG 0.505587 6_3:-76029489 Msa0959400:intron
CATGGACTTTACGTTTCACC+TGG 0.512238 6_3:-76030760 Msa0959400:intron
AGGACTCAATCGGGTGGCCA+TGG 0.512884 6_3:+76029811 None:intergenic
AGACGTGTTCAACCAATTCA+AGG 0.513816 6_3:-76029972 Msa0959400:CDS
TAACTTCTTGCCACTAGCCT+AGG 0.521919 6_3:+76029734 None:intergenic
AGGAAATTTCAGTGAAACAT+TGG 0.522145 6_3:-76029942 Msa0959400:CDS
GCCTCACATATGATGGTTCA+TGG 0.522278 6_3:-76029884 Msa0959400:CDS
TAAGAAGTCGTAGCCAACAC+TGG 0.522936 6_3:+76028005 None:intergenic
ATGATGTGCTAACCTTTCAA+TGG 0.523871 6_3:+76029274 None:intergenic
AATAAATGCTCAAATTTCCA+CGG 0.527066 6_3:+76027468 None:intergenic
GTGGGATATTAATTGCTTGG+AGG 0.529634 6_3:-76028990 Msa0959400:CDS
TGGCCTCACTCATATAAGCT+TGG 0.531321 6_3:+76028099 None:intergenic
TTCCTTGCTTGAGAATATTG+GGG 0.534381 6_3:+76029389 None:intergenic
AACATTGGTCGTAGATGTTG+AGG 0.541350 6_3:-76029927 Msa0959400:CDS
TGCAAGAGAAGGACTCAATC+GGG 0.546913 6_3:+76029802 None:intergenic
AGCCCCAATATTCTCAAGCA+AGG 0.547455 6_3:-76029391 Msa0959400:CDS
TTTAGGGTGTTGAGGCAACA+TGG 0.552007 6_3:-76030778 Msa0959400:CDS
CTTATATGAGTGAGGCCAGA+TGG 0.552296 6_3:-76028094 Msa0959400:CDS
ATAAATGCTCAAATTTCCAC+GGG 0.561349 6_3:+76027469 None:intergenic
ATCGGGTGGCCATGGACTGA+AGG 0.566605 6_3:+76029819 None:intergenic
ATAGGTAACGGAACTTCAGT+TGG 0.566914 6_3:+76027607 None:intergenic
GTACTTGGAATGTTATATGA+GGG 0.567173 6_3:-76027719 Msa0959400:CDS
CTTTGTATATAGGTGGTGGA+AGG 0.567617 6_3:-76029495 Msa0959400:intron
GTATGAAGCCTCACATATGA+TGG 0.567934 6_3:-76029891 Msa0959400:CDS
ATCAAGTGGTTACCCAGTGT+TGG 0.570889 6_3:-76028018 Msa0959400:CDS
ATAGCACAGCAAGAGAATGA+AGG 0.572946 6_3:+76030800 None:intergenic
TTGGCTACGACTTCTTACAT+TGG 0.586299 6_3:-76027999 Msa0959400:CDS
ACTACTCTATCTCGTGCATA+CGG 0.590301 6_3:+76029449 None:intergenic
CACATATCAACAATATCAAG+TGG 0.594145 6_3:-76028032 Msa0959400:CDS
GATTTCCACCCTAGCGTTTG+GGG 0.596026 6_3:-76031249 Msa0959400:CDS
AATCTCCCCAAACGCTAGGG+TGG 0.601357 6_3:+76031244 None:intergenic
TGATTTGCTTGTCAATCCCG+TGG 0.603076 6_3:-76027485 Msa0959400:CDS
GATAACTACACACACTCTGA+CGG 0.610210 6_3:-76027529 Msa0959400:CDS
AAGAAGTCGTAGCCAACACT+GGG 0.613680 6_3:+76028006 None:intergenic
AACCAATTCAAGGACGAGCA+AGG 0.615624 6_3:-76029962 Msa0959400:CDS
GGAACCTGATATGAATATTG+CGG 0.628405 6_3:-76031019 Msa0959400:CDS
ACATTGGTCGTAGATGTTGA+GGG 0.633793 6_3:-76029926 Msa0959400:CDS
ACCATGAACCATCATATGTG+AGG 0.634158 6_3:+76029883 None:intergenic
AATCCAAGCTTATATGAGTG+AGG 0.644710 6_3:-76028102 Msa0959400:CDS
GGATGAAATTGTGTCTAGCG+AGG 0.663791 6_3:-76027886 Msa0959400:intron
ACACACGTCAGAATAGGTAA+CGG 0.688917 6_3:+76027595 None:intergenic
AAGAGAAGGACTCAATCGGG+TGG 0.695745 6_3:+76029805 None:intergenic
TAACTATACACCAACAACAG+CGG 0.710034 6_3:-76028063 Msa0959400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATTTTTTTTAAATT+AGG + chr6_3:76029215-76029234 None:intergenic 0.0%
!!! TATTATATTAATTTTTAAAA+CGG + chr6_3:76030939-76030958 None:intergenic 0.0%
!!! CATTTTTTATGTTTTTAATT+TGG - chr6_3:76028115-76028134 Msa0959400:CDS 10.0%
!!! AGATAATAATTTTTTTTTTG+TGG + chr6_3:76028511-76028530 None:intergenic 10.0%
!! ATTTATAATTTATTCAACAA+TGG - chr6_3:76030006-76030025 Msa0959400:intron 10.0%
!!! ATTTCATTTTAAATTTTGTA+TGG - chr6_3:76030036-76030055 Msa0959400:intron 10.0%
!!! AAATATTTTTACATCATTTT+AGG - chr6_3:76030137-76030156 Msa0959400:intron 10.0%
!! ATGAGTAAATAAATAGTATA+AGG + chr6_3:76027725-76027744 None:intergenic 15.0%
!! ACAAATTGATAAACTAAAAA+AGG - chr6_3:76027791-76027810 Msa0959400:intron 15.0%
!! TAATATTTGACTATATTCAT+GGG - chr6_3:76028222-76028241 Msa0959400:intron 15.0%
!! TAATATGAATGTCTAAAAAA+TGG - chr6_3:76028251-76028270 Msa0959400:intron 15.0%
!! GATAATAATTAAAACAAATG+AGG + chr6_3:76028408-76028427 None:intergenic 15.0%
!!! TAATAATTTTTTTTTTGTGG+TGG + chr6_3:76028508-76028527 None:intergenic 15.0%
!! AATATTAATGTTATACATGT+AGG - chr6_3:76028585-76028604 Msa0959400:intron 15.0%
!! TATAAATAAGAAACTAATAC+AGG + chr6_3:76028733-76028752 None:intergenic 15.0%
!! ATAAATTAATATGTCTCTAA+TGG - chr6_3:76028754-76028773 Msa0959400:intron 15.0%
!!! TATTTTTTTTAAATTAGGCA+GGG + chr6_3:76029210-76029229 None:intergenic 15.0%
!!! ATATTTTTTTTAAATTAGGC+AGG + chr6_3:76029211-76029230 None:intergenic 15.0%
!!! TATTTTTTGTCTTTGTATAT+AGG - chr6_3:76029281-76029300 Msa0959400:intron 15.0%
!! GATTAAAGATAAATTTCATA+TGG + chr6_3:76029591-76029610 None:intergenic 15.0%
!!! TCATAATGATATATTTTTCT+TGG + chr6_3:76030198-76030217 None:intergenic 15.0%
!! CTATCAAAGAATAAAAATTA+AGG - chr6_3:76030410-76030429 Msa0959400:intron 15.0%
!! TCATAAAATTAAGATTACAA+AGG + chr6_3:76030516-76030535 None:intergenic 15.0%
!! TTAACATCATTTAATTACAT+AGG - chr6_3:76030599-76030618 Msa0959400:intron 15.0%
!! AATTCTTTAAATCAACAACA+AGG - chr6_3:76027600-76027619 Msa0959400:CDS 20.0%
!! AATTGATAAACTAAAAAAGG+AGG - chr6_3:76027794-76027813 Msa0959400:intron 20.0%
!!! TGTTCACATTTTTTTTTTCA+AGG - chr6_3:76028065-76028084 Msa0959400:CDS 20.0%
!! GTAATATTTGACTATATTCA+TGG - chr6_3:76028221-76028240 Msa0959400:intron 20.0%
!!! AATCCTTTTTTTACTAAAAG+TGG + chr6_3:76028281-76028300 None:intergenic 20.0%
!! AAGTTTCTTACTTAATAAGA+TGG + chr6_3:76028653-76028672 None:intergenic 20.0%
!! ATGGTTGTTTAATATTATTG+TGG - chr6_3:76028773-76028792 Msa0959400:intron 20.0%
!! ACAAAGACAAAAAATAGTAT+AGG + chr6_3:76029277-76029296 None:intergenic 20.0%
!!! TGAATTAGAACTTTTTACAA+AGG - chr6_3:76029489-76029508 Msa0959400:intron 20.0%
!!! TTGCAATCAAAATGATTTTT+AGG - chr6_3:76029774-76029793 Msa0959400:CDS 20.0%
!!! AATCAAAATGATTTTTAGGT+GGG - chr6_3:76029778-76029797 Msa0959400:CDS 20.0%
!!! AATTTTGTATGGTTATCAAA+TGG - chr6_3:76030047-76030066 Msa0959400:intron 20.0%
!! TCATTATGAAGTTATTTGAT+TGG - chr6_3:76030209-76030228 Msa0959400:intron 20.0%
!! GATTAAATGCAATGTTAAAA+AGG - chr6_3:76030381-76030400 Msa0959400:intron 20.0%
!! TTTCTTTATACTTTAATCAG+TGG - chr6_3:76030542-76030561 Msa0959400:intron 20.0%
!!! TTTAATTACATAGGTCTTTT+TGG - chr6_3:76030608-76030627 Msa0959400:intron 20.0%
!!! TACATGTTTTGAATACATAC+AGG - chr6_3:76027746-76027765 Msa0959400:CDS 25.0%
!! AGAAGAAATTAGTCAAGTTT+TGG - chr6_3:76027911-76027930 Msa0959400:CDS 25.0%
! TACAAGAGTTATGTTCAAAA+TGG - chr6_3:76027942-76027961 Msa0959400:CDS 25.0%
!!! AGACCACTTTTAGTAAAAAA+AGG - chr6_3:76028275-76028294 Msa0959400:intron 25.0%
! GACAATTCATAAAATATGCA+CGG - chr6_3:76028463-76028482 Msa0959400:intron 25.0%
! TGCAAGTAGAATTTCATTAT+GGG + chr6_3:76029104-76029123 None:intergenic 25.0%
! ATGCAAGTAGAATTTCATTA+TGG + chr6_3:76029105-76029124 None:intergenic 25.0%
! TAATGAAATTCTACTTGCAT+TGG - chr6_3:76029105-76029124 Msa0959400:intron 25.0%
!! TTCCAAATTCTTTTTGATGT+AGG + chr6_3:76029159-76029178 None:intergenic 25.0%
!! TTTTTGTCTTTGTATATAGG+TGG - chr6_3:76029284-76029303 Msa0959400:intron 25.0%
! GTCATCAATGTATGATAAAA+TGG + chr6_3:76029443-76029462 None:intergenic 25.0%
!!! ATGGTTTTAACTCTAAAGTT+TGG + chr6_3:76029572-76029591 None:intergenic 25.0%
!!! CAATCAAAATGATTTTTAGG+TGG - chr6_3:76029777-76029796 Msa0959400:CDS 25.0%
!!! ACTCTTACTTCTTTTAAGAA+GGG + chr6_3:76029923-76029942 None:intergenic 25.0%
!!! AACTCTTACTTCTTTTAAGA+AGG + chr6_3:76029924-76029943 None:intergenic 25.0%
! TATCCATTGTTATATGAACT+TGG - chr6_3:76030290-76030309 Msa0959400:intron 25.0%
! AAGAAAAATGTTTCATCATG+AGG - chr6_3:76030352-76030371 Msa0959400:intron 25.0%
! AACAAAAGACATCTTTGATT+GGG - chr6_3:76030825-76030844 Msa0959400:CDS 25.0%
!! AAGCGTTTTCTATTTTCTTT+TGG + chr6_3:76031130-76031149 None:intergenic 25.0%
! AAAAGAAAATAGAAAACGCT+TGG - chr6_3:76031129-76031148 Msa0959400:intron 25.0%
CTTCAATCCTAATGAGAAAT+CGG - chr6_3:76027494-76027513 Msa0959400:CDS 30.0%
! GAATCTGGGATAATATTAAG+TGG + chr6_3:76027686-76027705 None:intergenic 30.0%
AATGTGAGTAACTTGAATCT+GGG + chr6_3:76027700-76027719 None:intergenic 30.0%
AAATGTGAGTAACTTGAATC+TGG + chr6_3:76027701-76027720 None:intergenic 30.0%
TTAAAAACAGAGAAACCCTT+GGG - chr6_3:76027834-76027853 Msa0959400:intron 30.0%
! CAAGTTGAGATATATATACC+AGG + chr6_3:76028047-76028066 None:intergenic 30.0%
!! ATGAGTGTCTTTTGTTTGAT+CGG - chr6_3:76028350-76028369 Msa0959400:intron 30.0%
TAATAAGATGGCTACCATAT+GGG + chr6_3:76028641-76028660 None:intergenic 30.0%
TTAATAAGATGGCTACCATA+TGG + chr6_3:76028642-76028661 None:intergenic 30.0%
AGGAAATTTCAGTGAAACAT+TGG - chr6_3:76028844-76028863 Msa0959400:intron 30.0%
! GGTTCATGGTGAAAATATTT+TGG - chr6_3:76028916-76028935 Msa0959400:CDS 30.0%
!! TGGTGAAAATATTTTGGAAG+AGG - chr6_3:76028922-76028941 Msa0959400:CDS 30.0%
!! AAATATTTTGGAAGAGGCTT+TGG - chr6_3:76028928-76028947 Msa0959400:CDS 30.0%
!! TTTACTTTTGTTGCAAGAGA+AGG + chr6_3:76028998-76029017 None:intergenic 30.0%
! ATTCTTTTTGATGTAGGCTT+TGG + chr6_3:76029153-76029172 None:intergenic 30.0%
AGCCTACATCAAAAAGAATT+TGG - chr6_3:76029154-76029173 Msa0959400:intron 30.0%
!!! AGTAGTAGAATGTTGCTTTT+GGG - chr6_3:76029354-76029373 Msa0959400:CDS 30.0%
ATATTGGGGCTCAAAATATA+CGG + chr6_3:76029386-76029405 None:intergenic 30.0%
TTTCCTTGCTTGAGAATATT+GGG + chr6_3:76029401-76029420 None:intergenic 30.0%
! TTTTCCTTGCTTGAGAATAT+TGG + chr6_3:76029402-76029421 None:intergenic 30.0%
! TTTTTACAAAGGCCATTGAA+AGG - chr6_3:76029500-76029519 Msa0959400:intron 30.0%
CTAGTCATCAAGTTTAGATT+TGG - chr6_3:76029610-76029629 Msa0959400:intron 30.0%
AATTTAACCATCTCCAATCT+TGG - chr6_3:76029655-76029674 Msa0959400:CDS 30.0%
ATTGAATTAGCAACCAAGAT+TGG + chr6_3:76029671-76029690 None:intergenic 30.0%
! GTTGCTTTATAAATCACTCT+TGG - chr6_3:76029838-76029857 Msa0959400:CDS 30.0%
!! CTCTTACTTCTTTTAAGAAG+GGG + chr6_3:76029922-76029941 None:intergenic 30.0%
! TTTTCTTGGTCAAGTTATCT+AGG + chr6_3:76030184-76030203 None:intergenic 30.0%
GAACCAAGTTCATATAACAA+TGG + chr6_3:76030296-76030315 None:intergenic 30.0%
AGGCAAAAACTTATTATCCA+TGG - chr6_3:76030430-76030449 Msa0959400:intron 30.0%
CACATATCAACAATATCAAG+TGG - chr6_3:76030754-76030773 Msa0959400:intron 30.0%
CAACAAAAGACATCTTTGAT+TGG - chr6_3:76030824-76030843 Msa0959400:CDS 30.0%
GTACTTGGAATGTTATATGA+GGG - chr6_3:76031067-76031086 Msa0959400:intron 30.0%
TGAGGGAATATGATATGAAT+AGG - chr6_3:76031084-76031103 Msa0959400:intron 30.0%
GAGGGAATATGATATGAATA+GGG - chr6_3:76031085-76031104 Msa0959400:intron 30.0%
! TGCAAAACCGATTTCTCATT+AGG + chr6_3:76027504-76027523 None:intergenic 35.0%
TCAGTATGCTTCAGAATCTA+TGG - chr6_3:76027572-76027591 Msa0959400:CDS 35.0%
GGAACCTGATATGAATATTG+CGG - chr6_3:76027767-76027786 Msa0959400:intron 35.0%
CTTAAAAACAGAGAAACCCT+TGG - chr6_3:76027833-76027852 Msa0959400:intron 35.0%
!!! ATCAAGTTGACTTTTCCCAA+GGG + chr6_3:76027852-76027871 None:intergenic 35.0%
!!! AATCAAGTTGACTTTTCCCA+AGG + chr6_3:76027853-76027872 None:intergenic 35.0%
!! ATTGACTCGATATGTCGTTT+GGG - chr6_3:76027870-76027889 Msa0959400:intron 35.0%
!! ATTCTCTTGCTGTGCTATTT+AGG - chr6_3:76027991-76028010 Msa0959400:CDS 35.0%
!! TTCTCTTGCTGTGCTATTTA+GGG - chr6_3:76027992-76028011 Msa0959400:CDS 35.0%
ATCGGATACATAGTAGACAT+CGG - chr6_3:76028368-76028387 Msa0959400:intron 35.0%
TAAGCTTAACTCAGTTGGTT+TGG - chr6_3:76028441-76028460 Msa0959400:intron 35.0%
TCATAAAATATGCACGGTCT+AGG - chr6_3:76028469-76028488 Msa0959400:intron 35.0%
CATAAAATATGCACGGTCTA+GGG - chr6_3:76028470-76028489 Msa0959400:intron 35.0%
!!! TTTTTTTTTTGTGGTGGCCA+GGG + chr6_3:76028502-76028521 None:intergenic 35.0%
!!! ATTTTTTTTTTGTGGTGGCC+AGG + chr6_3:76028503-76028522 None:intergenic 35.0%
! TCTACTTGCATTGGCAAAAT+TGG - chr6_3:76029114-76029133 Msa0959400:intron 35.0%
TTGTCTTTGTATATAGGTGG+TGG - chr6_3:76029287-76029306 Msa0959400:CDS 35.0%
!!! GAGTAGTAGAATGTTGCTTT+TGG - chr6_3:76029353-76029372 Msa0959400:CDS 35.0%
TTCCTTGCTTGAGAATATTG+GGG + chr6_3:76029400-76029419 None:intergenic 35.0%
GATGACACATATGATGCATA+TGG - chr6_3:76029457-76029476 Msa0959400:CDS 35.0%
ATGATGTGCTAACCTTTCAA+TGG + chr6_3:76029515-76029534 None:intergenic 35.0%
TAGGTGGGATATTAATTGCT+TGG - chr6_3:76029793-76029812 Msa0959400:CDS 35.0%
TAAAGCAACTTCGTGTAATC+CGG + chr6_3:76029827-76029846 None:intergenic 35.0%
GAGCAAGAAATGAAGAAAGA+AGG - chr6_3:76029878-76029897 Msa0959400:CDS 35.0%
!! TTCTTTTAAGAAGGGGTCAA+GGG + chr6_3:76029915-76029934 None:intergenic 35.0%
TGGTTATCAAATGGACGTTT+AGG - chr6_3:76030056-76030075 Msa0959400:intron 35.0%
GAACTGAGTTCATATAACCA+TGG + chr6_3:76030450-76030469 None:intergenic 35.0%
AATCCAAGCTTATATGAGTG+AGG - chr6_3:76030684-76030703 Msa0959400:intron 35.0%
ATAGTTAGCATTCAACCATC+TGG + chr6_3:76030710-76030729 None:intergenic 35.0%
TAACTATACACCAACAACAG+CGG - chr6_3:76030723-76030742 Msa0959400:intron 35.0%
TACGACTTCTTACATTGGAA+TGG - chr6_3:76030792-76030811 Msa0959400:CDS 35.0%
ACGACTTCTTACATTGGAAT+GGG - chr6_3:76030793-76030812 Msa0959400:CDS 35.0%
! GCAGCAGCATTAACAATTTT+TGG + chr6_3:76030862-76030881 None:intergenic 35.0%
TGCTATTCATTGCAGACTTA+GGG - chr6_3:76030879-76030898 Msa0959400:CDS 35.0%
CGTACTTGGAATGTTATATG+AGG - chr6_3:76031066-76031085 Msa0959400:intron 35.0%
CGCTTGGAAAGATATAAATC+AGG - chr6_3:76031145-76031164 Msa0959400:intron 35.0%
AAAAATCTCCCCAAACGCTA+GGG + chr6_3:76027548-76027567 None:intergenic 40.0%
AAAAAATCTCCCCAAACGCT+AGG + chr6_3:76027549-76027568 None:intergenic 40.0%
TGTGCCGCAATATTCATATC+AGG + chr6_3:76027774-76027793 None:intergenic 40.0%
!! GATTGACTCGATATGTCGTT+TGG - chr6_3:76027869-76027888 Msa0959400:intron 40.0%
ATAGCACAGCAAGAGAATGA+AGG + chr6_3:76027989-76028008 None:intergenic 40.0%
CTTAGACCAGTTTACCCATA+TGG - chr6_3:76028624-76028643 Msa0959400:intron 40.0%
AGACGTGTTCAACCAATTCA+AGG - chr6_3:76028814-76028833 Msa0959400:intron 40.0%
AACATTGGTCGTAGATGTTG+AGG - chr6_3:76028859-76028878 Msa0959400:intron 40.0%
ACATTGGTCGTAGATGTTGA+GGG - chr6_3:76028860-76028879 Msa0959400:intron 40.0%
GTATGAAGCCTCACATATGA+TGG - chr6_3:76028895-76028914 Msa0959400:CDS 40.0%
ACCATGAACCATCATATGTG+AGG + chr6_3:76028906-76028925 None:intergenic 40.0%
TTGCAAGAGAAGGACTCAAT+CGG + chr6_3:76028988-76029007 None:intergenic 40.0%
GGATGAATCTTGCTCATAGA+TGG + chr6_3:76029083-76029102 None:intergenic 40.0%
! TTTTTAAATTAGGCAGGGCG+TGG + chr6_3:76029205-76029224 None:intergenic 40.0%
!! CTTTGTATATAGGTGGTGGA+AGG - chr6_3:76029291-76029310 Msa0959400:CDS 40.0%
ACTACTCTATCTCGTGCATA+CGG + chr6_3:76029340-76029359 None:intergenic 40.0%
TTAGCAACCAAGATTGGAGA+TGG + chr6_3:76029665-76029684 None:intergenic 40.0%
GTGGGATATTAATTGCTTGG+AGG - chr6_3:76029796-76029815 Msa0959400:CDS 40.0%
TAATTGCTTGGAGGATCTTC+CGG - chr6_3:76029805-76029824 Msa0959400:CDS 40.0%
!! CTTCTTTTAAGAAGGGGTCA+AGG + chr6_3:76029916-76029935 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG - chr6_3:76030787-76030806 Msa0959400:CDS 40.0%
CTGCTATTCATTGCAGACTT+AGG - chr6_3:76030878-76030897 Msa0959400:CDS 40.0%
AGAGCATGTTTCTTCGTACT+TGG - chr6_3:76031052-76031071 Msa0959400:intron 40.0%
!! ATAGGTAACGGAACTTCAGT+TGG + chr6_3:76031182-76031201 None:intergenic 40.0%
ACACACGTCAGAATAGGTAA+CGG + chr6_3:76031194-76031213 None:intergenic 40.0%
TTGAGAACACACGTCAGAAT+AGG + chr6_3:76031200-76031219 None:intergenic 40.0%
!! CAATCTCTCGCGTTTTATTG+AGG - chr6_3:76031217-76031236 Msa0959400:CDS 40.0%
GATAACTACACACACTCTGA+CGG - chr6_3:76031257-76031276 Msa0959400:CDS 40.0%
AGATTTCCACCCTAGCGTTT+GGG - chr6_3:76027536-76027555 Msa0959400:CDS 45.0%
!! CTGTGCTATTTAGGGTGTTG+AGG - chr6_3:76028000-76028019 Msa0959400:CDS 45.0%
!! TTTAGGGTGTTGAGGCAACA+TGG - chr6_3:76028008-76028027 Msa0959400:CDS 45.0%
CATGGACTTTACGTTTCACC+TGG - chr6_3:76028026-76028045 Msa0959400:CDS 45.0%
CCAACTGAGTTAAGCTTACG+AGG + chr6_3:76028439-76028458 None:intergenic 45.0%
CCTCGTAAGCTTAACTCAGT+TGG - chr6_3:76028436-76028455 Msa0959400:intron 45.0%
TGGCTACCATATGGGTAAAC+TGG + chr6_3:76028633-76028652 None:intergenic 45.0%
AACCAATTCAAGGACGAGCA+AGG - chr6_3:76028824-76028843 Msa0959400:intron 45.0%
TTCCTTGCTCGTCCTTGAAT+TGG + chr6_3:76028829-76028848 None:intergenic 45.0%
GCCTCACATATGATGGTTCA+TGG - chr6_3:76028902-76028921 Msa0959400:CDS 45.0%
!!! GAGGCTTTGGCTTTTACTTC+TGG - chr6_3:76028941-76028960 Msa0959400:CDS 45.0%
TGCAAGAGAAGGACTCAATC+GGG + chr6_3:76028987-76029006 None:intergenic 45.0%
CAAAAACTTGCCTAGGCTAG+TGG - chr6_3:76029042-76029061 Msa0959400:intron 45.0%
! TAACTTCTTGCCACTAGCCT+AGG + chr6_3:76029055-76029074 None:intergenic 45.0%
!! ATATAGGTGGTGGAAGGAGT+TGG - chr6_3:76029297-76029316 Msa0959400:CDS 45.0%
AGCCCCAATATTCTCAAGCA+AGG - chr6_3:76029395-76029414 Msa0959400:CDS 45.0%
TGGCCTCACTCATATAAGCT+TGG + chr6_3:76030690-76030709 None:intergenic 45.0%
CTTATATGAGTGAGGCCAGA+TGG - chr6_3:76030692-76030711 Msa0959400:intron 45.0%
ATCAAGTGGTTACCCAGTGT+TGG - chr6_3:76030768-76030787 Msa0959400:CDS 45.0%
AAGAAGTCGTAGCCAACACT+GGG + chr6_3:76030783-76030802 None:intergenic 45.0%
TAAGAAGTCGTAGCCAACAC+TGG + chr6_3:76030784-76030803 None:intergenic 45.0%
GGATGAAATTGTGTCTAGCG+AGG - chr6_3:76030900-76030919 Msa0959400:CDS 45.0%
!! TGATTTGCTTGTCAATCCCG+TGG - chr6_3:76031301-76031320 Msa0959400:CDS 45.0%
CAGATTTCCACCCTAGCGTT+TGG - chr6_3:76027535-76027554 Msa0959400:CDS 50.0%
GATTTCCACCCTAGCGTTTG+GGG - chr6_3:76027537-76027556 Msa0959400:CDS 50.0%
TTCTGGTCACCTTCAGTCCA+TGG - chr6_3:76028958-76028977 Msa0959400:CDS 50.0%
AAGAGAAGGACTCAATCGGG+TGG + chr6_3:76028984-76029003 None:intergenic 50.0%
CTCTGCGCAAAAACTTGCCT+AGG - chr6_3:76029035-76029054 Msa0959400:intron 50.0%
TGCATGTACTCCGCTGTTGT+TGG + chr6_3:76030736-76030755 None:intergenic 50.0%
AATCTCCCCAAACGCTAGGG+TGG + chr6_3:76027545-76027564 None:intergenic 55.0%
! ACGGTCTAGGGTTCAAACCC+TGG - chr6_3:76028482-76028501 Msa0959400:intron 55.0%
! ATCGGGTGGCCATGGACTGA+AGG + chr6_3:76028970-76028989 None:intergenic 60.0%
AGGACTCAATCGGGTGGCCA+TGG + chr6_3:76028978-76028997 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 76027477 76031331 76027477 ID=Msa0959400;Name=Msa0959400
chr6_3 mRNA 76027477 76031331 76027477 ID=Msa0959400-mRNA-1;Parent=Msa0959400;Name=Msa0959400-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|7|0|556
chr6_3 exon 76031215 76031331 76031215 ID=Msa0959400-mRNA-1:exon:13674;Parent=Msa0959400-mRNA-1
chr6_3 exon 76030761 76031040 76030761 ID=Msa0959400-mRNA-1:exon:13673;Parent=Msa0959400-mRNA-1
chr6_3 exon 76029620 76029992 76029620 ID=Msa0959400-mRNA-1:exon:13672;Parent=Msa0959400-mRNA-1
chr6_3 exon 76029287 76029505 76029287 ID=Msa0959400-mRNA-1:exon:13671;Parent=Msa0959400-mRNA-1
chr6_3 exon 76028874 76029012 76028874 ID=Msa0959400-mRNA-1:exon:13670;Parent=Msa0959400-mRNA-1
chr6_3 exon 76027887 76028135 76027887 ID=Msa0959400-mRNA-1:exon:13669;Parent=Msa0959400-mRNA-1
chr6_3 exon 76027477 76027770 76027477 ID=Msa0959400-mRNA-1:exon:13668;Parent=Msa0959400-mRNA-1
chr6_3 CDS 76031215 76031331 76031215 ID=Msa0959400-mRNA-1:cds;Parent=Msa0959400-mRNA-1
chr6_3 CDS 76030761 76031040 76030761 ID=Msa0959400-mRNA-1:cds;Parent=Msa0959400-mRNA-1
chr6_3 CDS 76029620 76029992 76029620 ID=Msa0959400-mRNA-1:cds;Parent=Msa0959400-mRNA-1
chr6_3 CDS 76029287 76029505 76029287 ID=Msa0959400-mRNA-1:cds;Parent=Msa0959400-mRNA-1
chr6_3 CDS 76028874 76029012 76028874 ID=Msa0959400-mRNA-1:cds;Parent=Msa0959400-mRNA-1
chr6_3 CDS 76027887 76028135 76027887 ID=Msa0959400-mRNA-1:cds;Parent=Msa0959400-mRNA-1
chr6_3 CDS 76027477 76027770 76027477 ID=Msa0959400-mRNA-1:cds;Parent=Msa0959400-mRNA-1
Gene Sequence

>Msa0959400

ATGTCTTCAGTAGATTACTTCAATCCTAATGAGAAATCGGTTTTGCAAAGAAATGTTGCAGATTTCCACCCTAGCGTTTGGGGAGATTTTTTCATTCAGTATGCTTCAGAATCTATGGAACCTGATATGAATATTGCGGCACAAATTGATAAACTAAAAAAGGAGGTTAGACAAATGCTTGTCTTAAAAACAGAGAAACCCTTGGGAAAAGTCAACTTGATTGACTCGATATGTCGTTTGGGTGTGAGCTATCACTTTGAAGAAGAAATTAGTCAAGTTTTGGAACATATTTACAAGAGTTATGTTCAAAATGGAGAAATAACTCTCAAAGACAACCTTCATTCTCTTGCTGTGCTATTTAGGGTGTTGAGGCAACATGGACTTTACGTTTCACCTGACGTGTTCAACCAATTCAAGGACGAGCAAGGAAATTTCAGTGAAACATTGGTCGTAGATGTTGAGGGCATGTTAAACTTGTATGAAGCCTCACATATGATGGTTCATGGTGAAAATATTTTGGAAGAGGCTTTGGCTTTTACTTCTGGTCACCTTCAGTCCATGGCCACCCGATTGAGTCCTTCTCTTGCAACAAAAGTAAAACAAAGCTTAAGACAATCTCTGCGCAAAAACTTGCCTAGGCTAGTGGCAAGAAGTTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTACTTGCATTGGCAAAATTGGATTTTAATATGCTCCAAAGCCTACATCAAAAAGAATTTGGAAATATTAGCAAGTGGTGGAAGGAGTTGGATATTGCACAAAAACTACCGTATGCACGAGATAGAGTAGTAGAATGTTGCTTTTGGGTTATGACCGTATATTTTGAGCCCCAATATTCTCAAGCAAGGAAAATGATGTCAAAATTTATCTCCATTTTATCATACATTGATGACACATATGATGCATATGGAACTATTGATGAATTAGAACTTTTTACAAAGGCCATTGAAAGGTGGGATATTAATTGCTTGGAGGATCTTCCGGATTACACGAAGTTGCTTTATAAATCACTCTTGGATGTTTATGAAGAAATAGAGCAAGAAATGAAGAAAGAAGGAAGAGAATACACCCTTGACCCCTTCTTAAAAGAATTCAAAAATATAATCCAAGCTTATATGAGTGAGGCCAGATGGTTGAATGCTAACTATACACCAACAACAGCGGAGTACATGCACATATCAACAATATCAAGTGGTTACCCAGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCAACAAAAGACATCTTTGATTGGGTAACTAACAATCCAAAAATTGTTAATGCTGCTGCTATTCATTGCAGACTTAGGGATGAAATTGTGTCTAGCGAGTTTGAGCAGAAAAGAGAGCATGTTTCTTCGTACTTGGAATGTTATATGAGGGAATATGATATGAATAGGGAAGCTGCTATTCAAGAATGCCAAAAGAAAATAGAAAACGCTTGGAAAGATATAAATCAGGAATGTCTAAAACCAACTGAAGTTCCGTTACCTATTCTGACGTGTGTTCTCAATCTCTCGCGTTTTATTGAGGTTTTTTACAAAGATACAGATAACTACACACACTCTGACGGACTAATGAAGACATATATTAATGATTTGCTTGTCAATCCCGTGGAAATTTGA
Protein sequence

>Msa0959400

MSSVDYFNPNEKSVLQRNVADFHPSVWGDFFIQYASESMEPDMNIAAQIDKLKKEVRQMLVLKTEKPLGKVNLIDSICRLGVSYHFEEEISQVLEHIYKSYVQNGEITLKDNLHSLAVLFRVLRQHGLYVSPDVFNQFKDEQGNFSETLVVDVEGMLNLYEASHMMVHGENILEEALAFTSGHLQSMATRLSPSLATKVKQSLRQSLRKNLPRLVARSYISIYEQDSSHNEILLALAKLDFNMLQSLHQKEFGNISKWWKELDIAQKLPYARDRVVECCFWVMTVYFEPQYSQARKMMSKFISILSYIDDTYDAYGTIDELELFTKAIERWDINCLEDLPDYTKLLYKSLLDVYEEIEQEMKKEGREYTLDPFLKEFKNIIQAYMSEARWLNANYTPTTAEYMHISTISSGYPVLATTSYIGMGNIATKDIFDWVTNNPKIVNAAAIHCRLRDEIVSSEFEQKREHVSSYLECYMREYDMNREAAIQECQKKIENAWKDINQECLKPTEVPLPILTCVLNLSRFIEVFYKDTDNYTHSDGLMKTYINDLLVNPVEI*