Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0959420 | XP_004497487.1 | 69.424 | 556 | 141 | 1 | 1 | 527 | 1 | 556 | 0.0 | 806 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0959420 | sp|Q6Q3H3|TPSGD_VITVI | 48.519 | 540 | 245 | 2 | 17 | 527 | 22 | 557 | 0.0 | 548 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0959420 | A0A1S2Y0Q7 | 69.424 | 556 | 141 | 1 | 1 | 527 | 1 | 556 | 0.0 | 806 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0894130 | Msa0959420 | 0.854998 | 8.471208e-62 | -8.615850e-47 |
Msa0894140 | Msa0959420 | 0.886410 | 3.505142e-72 | -8.615850e-47 |
Msa0894190 | Msa0959420 | 0.829239 | 5.754278e-55 | -8.615850e-47 |
Msa0920900 | Msa0959420 | 0.875970 | 2.023603e-68 | -8.615850e-47 |
Msa0920920 | Msa0959420 | 0.875117 | 3.965556e-68 | -8.615850e-47 |
Msa0959400 | Msa0959420 | 0.873706 | 1.194195e-67 | -8.615850e-47 |
Msa0959420 | Msa0967510 | 0.878616 | 2.430495e-69 | -8.615850e-47 |
Msa0959420 | Msa0995250 | 0.842669 | 2.245662e-58 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0959420 | MtrunA17_Chr7g0236991 | 65.108 | 556 | 162 | 2 | 1 | 527 | 1 | 553 | 0.0 | 751 |
Msa0959420 | MtrunA17_Chr7g0237001 | 64.928 | 556 | 163 | 2 | 1 | 527 | 1 | 553 | 0.0 | 749 |
Msa0959420 | MtrunA17_Chr7g0237041 | 64.928 | 556 | 163 | 2 | 1 | 527 | 1 | 553 | 0.0 | 749 |
Msa0959420 | MtrunA17_Chr7g0237081 | 64.928 | 556 | 163 | 2 | 1 | 527 | 1 | 553 | 0.0 | 749 |
Msa0959420 | MtrunA17_Chr5g0425371 | 65.468 | 556 | 160 | 2 | 1 | 527 | 1 | 553 | 0.0 | 749 |
Msa0959420 | MtrunA17_Chr7g0237051 | 64.928 | 556 | 163 | 2 | 1 | 527 | 1 | 553 | 0.0 | 749 |
Msa0959420 | MtrunA17_Chr6g0466051 | 65.108 | 556 | 162 | 2 | 1 | 527 | 1 | 553 | 0.0 | 749 |
Msa0959420 | MtrunA17_Chr6g0465911 | 64.928 | 556 | 163 | 2 | 1 | 527 | 1 | 553 | 0.0 | 747 |
Msa0959420 | MtrunA17_Chr6g0465441 | 63.489 | 556 | 171 | 2 | 1 | 527 | 1 | 553 | 0.0 | 732 |
Msa0959420 | MtrunA17_Chr3g0105071 | 63.016 | 557 | 176 | 2 | 1 | 527 | 1 | 557 | 0.0 | 728 |
Msa0959420 | MtrunA17_Chr3g0082691 | 62.637 | 546 | 174 | 2 | 12 | 527 | 8 | 553 | 0.0 | 712 |
Msa0959420 | MtrunA17_Chr4g0024691 | 62.545 | 550 | 177 | 1 | 7 | 527 | 12 | 561 | 0.0 | 712 |
Msa0959420 | MtrunA17_Chr6g0451711 | 61.580 | 557 | 184 | 2 | 1 | 527 | 1 | 557 | 0.0 | 709 |
Msa0959420 | MtrunA17_Chr6g0465851 | 65.444 | 518 | 150 | 1 | 39 | 527 | 1 | 518 | 0.0 | 699 |
Msa0959420 | MtrunA17_Chr5g0431571 | 63.419 | 544 | 169 | 2 | 12 | 525 | 4 | 547 | 0.0 | 695 |
Msa0959420 | MtrunA17_Chr5g0431651 | 62.088 | 546 | 176 | 3 | 13 | 527 | 7 | 552 | 0.0 | 691 |
Msa0959420 | MtrunA17_Chr7g0236961 | 65.261 | 498 | 144 | 1 | 59 | 527 | 1 | 498 | 0.0 | 679 |
Msa0959420 | MtrunA17_Chr7g0237011 | 65.261 | 498 | 144 | 1 | 59 | 527 | 1 | 498 | 0.0 | 678 |
Msa0959420 | MtrunA17_Chr4g0042111 | 53.091 | 550 | 226 | 3 | 9 | 527 | 14 | 562 | 0.0 | 597 |
Msa0959420 | MtrunA17_Chr7g0236971 | 68.367 | 392 | 124 | 0 | 136 | 527 | 10 | 401 | 0.0 | 578 |
Msa0959420 | MtrunA17_Chr6g0465981 | 65.691 | 376 | 97 | 2 | 1 | 347 | 1 | 373 | 6.41e-176 | 500 |
Msa0959420 | MtrunA17_Chr6g0465871 | 65.691 | 376 | 97 | 2 | 1 | 347 | 1 | 373 | 6.41e-176 | 500 |
Msa0959420 | MtrunA17_Chr6g0466081 | 65.691 | 376 | 97 | 2 | 1 | 347 | 1 | 373 | 6.41e-176 | 500 |
Msa0959420 | MtrunA17_Chr6g0466111 | 66.568 | 338 | 84 | 1 | 39 | 347 | 1 | 338 | 5.42e-158 | 453 |
Msa0959420 | MtrunA17_Chr6g0465931 | 66.272 | 338 | 85 | 1 | 39 | 347 | 1 | 338 | 1.05e-156 | 450 |
Msa0959420 | MtrunA17_Chr2g0319041 | 42.518 | 548 | 278 | 8 | 15 | 527 | 12 | 557 | 3.94e-154 | 451 |
Msa0959420 | MtrunA17_Chr8g0336181 | 41.818 | 550 | 283 | 7 | 13 | 527 | 9 | 556 | 7.56e-148 | 436 |
Msa0959420 | MtrunA17_Chr7g0236951 | 64.856 | 313 | 81 | 1 | 59 | 342 | 1 | 313 | 4.66e-144 | 417 |
Msa0959420 | MtrunA17_Chr7g0237031 | 64.856 | 313 | 81 | 1 | 59 | 342 | 1 | 313 | 1.41e-143 | 416 |
Msa0959420 | MtrunA17_Chr2g0319051 | 40.546 | 513 | 270 | 7 | 48 | 527 | 4 | 514 | 2.10e-136 | 405 |
Msa0959420 | MtrunA17_Chr6g0466031 | 64.231 | 260 | 93 | 0 | 268 | 527 | 1 | 260 | 1.47e-119 | 352 |
Msa0959420 | MtrunA17_Chr7g0237061 | 61.154 | 260 | 78 | 2 | 268 | 527 | 1 | 237 | 2.63e-107 | 320 |
Msa0959420 | MtrunA17_Chr5g0445511 | 66.368 | 223 | 75 | 0 | 138 | 360 | 17 | 239 | 1.36e-106 | 318 |
Msa0959420 | MtrunA17_Chr4g0008621 | 41.000 | 400 | 203 | 5 | 15 | 381 | 19 | 418 | 1.39e-100 | 310 |
Msa0959420 | MtrunA17_Chr2g0319071 | 34.800 | 500 | 259 | 10 | 53 | 525 | 28 | 487 | 5.52e-100 | 310 |
Msa0959420 | MtrunA17_Chr4g0023911 | 31.685 | 546 | 333 | 6 | 13 | 525 | 41 | 579 | 1.03e-91 | 291 |
Msa0959420 | MtrunA17_Chr2g0310331 | 33.826 | 541 | 317 | 10 | 17 | 525 | 53 | 584 | 5.73e-89 | 285 |
Msa0959420 | MtrunA17_Chr7g0237021 | 68.023 | 172 | 55 | 0 | 356 | 527 | 1 | 172 | 2.27e-83 | 256 |
Msa0959420 | MtrunA17_Chr7g0236941 | 68.023 | 172 | 55 | 0 | 356 | 527 | 1 | 172 | 2.27e-83 | 256 |
Msa0959420 | MtrunA17_Chr8g0357411 | 31.261 | 547 | 338 | 7 | 10 | 525 | 48 | 587 | 1.96e-82 | 268 |
Msa0959420 | MtrunA17_Chr5g0445501 | 63.372 | 172 | 63 | 0 | 356 | 527 | 1 | 172 | 1.11e-76 | 239 |
Msa0959420 | MtrunA17_Chr6g0465941 | 63.372 | 172 | 63 | 0 | 356 | 527 | 1 | 172 | 1.38e-76 | 238 |
Msa0959420 | MtrunA17_Chr6g0466121 | 63.372 | 172 | 63 | 0 | 356 | 527 | 1 | 172 | 1.38e-76 | 238 |
Msa0959420 | MtrunA17_Chr6g0465991 | 63.372 | 172 | 63 | 0 | 356 | 527 | 1 | 172 | 1.38e-76 | 238 |
Msa0959420 | MtrunA17_Chr6g0466091 | 63.372 | 172 | 63 | 0 | 356 | 527 | 1 | 172 | 1.38e-76 | 238 |
Msa0959420 | MtrunA17_Chr6g0465881 | 62.791 | 172 | 64 | 0 | 356 | 527 | 1 | 172 | 7.66e-76 | 236 |
Msa0959420 | MtrunA17_Chr6g0466021 | 59.314 | 204 | 51 | 2 | 1 | 175 | 1 | 201 | 6.98e-75 | 235 |
Msa0959420 | MtrunA17_Chr2g0323151 | 31.197 | 468 | 278 | 5 | 71 | 505 | 4 | 460 | 9.63e-75 | 244 |
Msa0959420 | MtrunA17_Chr2g0323131 | 30.143 | 491 | 297 | 7 | 49 | 505 | 67 | 545 | 3.93e-74 | 245 |
Msa0959420 | MtrunA17_Chr2g0319081 | 39.144 | 327 | 177 | 8 | 204 | 527 | 120 | 427 | 4.99e-74 | 241 |
Msa0959420 | MtrunA17_Chr2g0319081 | 42.500 | 120 | 68 | 1 | 15 | 133 | 19 | 138 | 1.64e-24 | 106 |
Msa0959420 | MtrunA17_Chr4g0048921 | 30.680 | 515 | 315 | 7 | 44 | 525 | 64 | 569 | 3.07e-71 | 238 |
Msa0959420 | MtrunA17_Chr7g0237071 | 58.416 | 202 | 55 | 1 | 59 | 231 | 1 | 202 | 1.16e-70 | 225 |
Msa0959420 | MtrunA17_Chr7g0236921 | 63.924 | 158 | 53 | 1 | 374 | 527 | 1 | 158 | 1.93e-69 | 219 |
Msa0959420 | MtrunA17_Chr4g0048911 | 28.287 | 502 | 317 | 8 | 55 | 519 | 61 | 556 | 4.95e-64 | 218 |
Msa0959420 | MtrunA17_Chr7g0236931 | 61.039 | 154 | 57 | 1 | 374 | 527 | 1 | 151 | 7.21e-64 | 205 |
Msa0959420 | MtrunA17_Chr2g0310401 | 31.959 | 388 | 259 | 4 | 141 | 525 | 45 | 430 | 2.97e-61 | 207 |
Msa0959420 | MtrunA17_Chr7g0236981 | 68.939 | 132 | 38 | 1 | 1 | 132 | 1 | 129 | 4.45e-58 | 189 |
Msa0959420 | MtrunA17_Chr2g0280581 | 27.220 | 518 | 323 | 10 | 47 | 518 | 9 | 518 | 8.07e-58 | 201 |
Msa0959420 | MtrunA17_Chr3g0108941 | 26.733 | 505 | 329 | 11 | 54 | 521 | 13 | 513 | 3.26e-54 | 191 |
Msa0959420 | MtrunA17_Chr3g0109031 | 27.216 | 485 | 311 | 10 | 54 | 500 | 13 | 493 | 9.69e-54 | 189 |
Msa0959420 | MtrunA17_Chr3g0105691 | 27.310 | 487 | 318 | 8 | 54 | 505 | 46 | 531 | 2.24e-53 | 189 |
Msa0959420 | MtrunA17_Chr3g0109021 | 27.423 | 485 | 310 | 10 | 54 | 500 | 13 | 493 | 3.15e-53 | 188 |
Msa0959420 | MtrunA17_Chr7g0233861 | 64.444 | 135 | 39 | 1 | 167 | 301 | 33 | 158 | 4.98e-53 | 177 |
Msa0959420 | MtrunA17_Chr3g0109001 | 26.955 | 486 | 312 | 10 | 54 | 500 | 13 | 494 | 5.34e-52 | 185 |
Msa0959420 | MtrunA17_Chr3g0099031 | 27.778 | 504 | 324 | 11 | 54 | 521 | 13 | 512 | 5.44e-52 | 184 |
Msa0959420 | MtrunA17_Chr3g0108981 | 26.824 | 466 | 301 | 7 | 73 | 500 | 6 | 469 | 3.85e-51 | 182 |
Msa0959420 | MtrunA17_Chr3g0108961 | 26.824 | 466 | 301 | 7 | 73 | 500 | 6 | 469 | 3.85e-51 | 182 |
Msa0959420 | MtrunA17_Chr3g0108991 | 26.708 | 483 | 316 | 10 | 54 | 500 | 13 | 493 | 1.48e-50 | 181 |
Msa0959420 | MtrunA17_Chr3g0108951 | 26.708 | 483 | 316 | 10 | 54 | 500 | 13 | 493 | 1.48e-50 | 181 |
Msa0959420 | MtrunA17_Chr6g0477111 | 26.261 | 476 | 310 | 9 | 73 | 510 | 6 | 478 | 5.54e-50 | 179 |
Msa0959420 | MtrunA17_Chr3g0108971 | 26.509 | 464 | 304 | 9 | 73 | 500 | 6 | 468 | 1.88e-49 | 177 |
Msa0959420 | MtrunA17_Chr3g0109011 | 26.180 | 466 | 303 | 9 | 73 | 500 | 6 | 468 | 1.20e-48 | 175 |
Msa0959420 | MtrunA17_Chr6g0477121 | 28.488 | 344 | 236 | 5 | 164 | 500 | 71 | 411 | 7.86e-47 | 168 |
Msa0959420 | MtrunA17_Chr7g0217361 | 32.000 | 300 | 203 | 1 | 226 | 524 | 8 | 307 | 8.10e-46 | 162 |
Msa0959420 | MtrunA17_Chr5g0445521 | 66.327 | 98 | 33 | 0 | 1 | 98 | 1 | 98 | 1.11e-40 | 142 |
Msa0959420 | MtrunA17_Chr5g0445401 | 70.213 | 94 | 26 | 1 | 137 | 228 | 1 | 94 | 1.76e-35 | 127 |
Msa0959420 | MtrunA17_Chr3g0082711 | 50.000 | 116 | 41 | 1 | 412 | 527 | 1 | 99 | 6.42e-33 | 121 |
Msa0959420 | MtrunA17_Chr8g0357231 | 28.682 | 258 | 182 | 2 | 269 | 525 | 1 | 257 | 2.50e-32 | 124 |
Msa0959420 | MtrunA17_Chr8g0357221 | 32.129 | 249 | 133 | 5 | 10 | 228 | 48 | 290 | 2.31e-28 | 114 |
Msa0959420 | MtrunA17_Chr3g0101681 | 23.892 | 519 | 320 | 16 | 69 | 525 | 275 | 780 | 2.02e-26 | 114 |
Msa0959420 | MtrunA17_Chr2g0310121 | 21.606 | 523 | 327 | 14 | 69 | 525 | 274 | 779 | 3.21e-24 | 107 |
Msa0959420 | MtrunA17_Chr2g0281651 | 24.272 | 309 | 221 | 8 | 204 | 506 | 43 | 344 | 1.61e-18 | 87.8 |
Msa0959420 | MtrunA17_Chr2g0310411 | 33.065 | 124 | 75 | 3 | 10 | 133 | 51 | 166 | 6.21e-14 | 70.1 |
Msa0959420 | MtrunA17_Chr7g0217351 | 26.977 | 215 | 123 | 5 | 46 | 229 | 62 | 273 | 1.46e-13 | 71.6 |
Msa0959420 | MtrunA17_Chr4g0008631 | 37.349 | 83 | 50 | 2 | 446 | 527 | 1 | 82 | 2.53e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0959420 | AT5G23960.2 | 34.249 | 546 | 325 | 5 | 13 | 527 | 3 | 545 | 1.85e-120 | 365 |
Msa0959420 | AT5G23960.1 | 34.244 | 549 | 323 | 7 | 13 | 527 | 3 | 547 | 2.11e-119 | 362 |
Msa0959420 | AT1G70080.1 | 33.932 | 557 | 329 | 11 | 8 | 527 | 57 | 611 | 2.09e-105 | 328 |
Msa0959420 | AT3G14490.1 | 33.516 | 546 | 324 | 8 | 17 | 527 | 60 | 601 | 6.47e-101 | 317 |
Msa0959420 | AT3G14520.1 | 33.087 | 541 | 323 | 8 | 22 | 527 | 68 | 604 | 8.11e-100 | 313 |
Msa0959420 | AT1G31950.3 | 32.664 | 548 | 317 | 8 | 22 | 527 | 70 | 607 | 1.23e-98 | 311 |
Msa0959420 | AT3G14540.1 | 33.210 | 542 | 321 | 7 | 22 | 527 | 65 | 601 | 4.31e-98 | 309 |
Msa0959420 | AT1G31950.1 | 32.902 | 541 | 324 | 7 | 22 | 527 | 70 | 606 | 6.55e-98 | 309 |
Msa0959420 | AT4G20210.1 | 31.752 | 548 | 332 | 9 | 17 | 527 | 58 | 600 | 1.54e-94 | 300 |
Msa0959420 | AT3G32030.1 | 30.556 | 540 | 338 | 6 | 22 | 527 | 68 | 604 | 2.24e-93 | 297 |
Msa0959420 | AT5G44630.1 | 31.752 | 548 | 328 | 9 | 18 | 525 | 14 | 555 | 1.16e-92 | 293 |
Msa0959420 | AT3G29410.1 | 31.123 | 543 | 339 | 6 | 17 | 527 | 64 | 603 | 8.44e-92 | 293 |
Msa0959420 | AT4G13300.1 | 31.911 | 539 | 327 | 8 | 25 | 527 | 20 | 554 | 1.58e-90 | 288 |
Msa0959420 | AT1G33750.1 | 31.354 | 539 | 327 | 9 | 24 | 527 | 73 | 603 | 5.03e-90 | 288 |
Msa0959420 | AT4G20200.1 | 31.955 | 532 | 300 | 11 | 47 | 527 | 84 | 604 | 6.03e-89 | 285 |
Msa0959420 | AT3G29410.2 | 31.493 | 489 | 302 | 4 | 70 | 527 | 12 | 498 | 2.22e-87 | 278 |
Msa0959420 | AT4G13280.2 | 31.784 | 538 | 325 | 9 | 27 | 527 | 22 | 554 | 2.92e-85 | 274 |
Msa0959420 | AT4G15870.1 | 31.054 | 541 | 318 | 10 | 25 | 527 | 75 | 598 | 4.51e-84 | 272 |
Msa0959420 | AT5G48110.1 | 37.026 | 343 | 211 | 5 | 186 | 527 | 1 | 339 | 2.11e-82 | 260 |
Msa0959420 | AT3G14540.2 | 34.081 | 446 | 258 | 5 | 22 | 434 | 65 | 507 | 5.03e-82 | 265 |
Msa0959420 | AT3G29190.1 | 30.077 | 522 | 320 | 9 | 45 | 527 | 86 | 601 | 1.22e-81 | 266 |
Msa0959420 | AT2G23230.2 | 30.952 | 546 | 333 | 10 | 16 | 522 | 55 | 595 | 2.35e-81 | 266 |
Msa0959420 | AT1G31950.2 | 33.556 | 450 | 248 | 7 | 22 | 430 | 70 | 509 | 5.99e-81 | 262 |
Msa0959420 | AT2G23230.1 | 30.769 | 546 | 329 | 11 | 16 | 522 | 55 | 590 | 5.10e-79 | 259 |
Msa0959420 | AT4G20230.1 | 29.926 | 538 | 332 | 10 | 25 | 523 | 70 | 601 | 1.34e-76 | 253 |
Msa0959420 | AT4G20230.2 | 29.740 | 538 | 333 | 10 | 25 | 523 | 82 | 613 | 1.55e-76 | 253 |
Msa0959420 | AT3G29110.1 | 30.220 | 546 | 339 | 8 | 17 | 525 | 55 | 595 | 3.53e-76 | 251 |
Msa0959420 | AT4G13280.1 | 30.669 | 538 | 301 | 10 | 27 | 527 | 22 | 524 | 4.17e-75 | 247 |
Msa0959420 | AT4G16740.1 | 29.583 | 551 | 346 | 12 | 12 | 527 | 21 | 564 | 4.57e-75 | 248 |
Msa0959420 | AT1G66020.1 | 28.755 | 546 | 351 | 7 | 17 | 527 | 56 | 598 | 8.60e-75 | 248 |
Msa0959420 | AT2G24210.1 | 29.264 | 557 | 350 | 13 | 10 | 527 | 39 | 590 | 5.40e-73 | 243 |
Msa0959420 | AT4G16730.1 | 29.344 | 518 | 315 | 11 | 52 | 525 | 27 | 537 | 8.78e-73 | 241 |
Msa0959420 | AT1G61680.2 | 29.878 | 492 | 311 | 5 | 54 | 517 | 77 | 562 | 2.43e-71 | 238 |
Msa0959420 | AT4G16730.2 | 29.259 | 499 | 303 | 10 | 73 | 527 | 1 | 493 | 4.20e-71 | 235 |
Msa0959420 | AT1G61680.1 | 29.459 | 499 | 311 | 5 | 54 | 517 | 77 | 569 | 4.84e-70 | 234 |
Msa0959420 | AT1G48800.1 | 28.388 | 546 | 346 | 10 | 17 | 523 | 63 | 602 | 1.26e-69 | 234 |
Msa0959420 | AT3G25820.1 | 28.924 | 567 | 332 | 14 | 15 | 527 | 45 | 594 | 2.50e-69 | 233 |
Msa0959420 | AT3G25830.1 | 28.924 | 567 | 332 | 14 | 15 | 527 | 45 | 594 | 2.50e-69 | 233 |
Msa0959420 | AT3G25810.1 | 28.142 | 565 | 342 | 9 | 15 | 527 | 45 | 597 | 4.08e-69 | 233 |
Msa0959420 | AT1G48820.1 | 28.794 | 514 | 337 | 9 | 17 | 520 | 63 | 557 | 4.15e-68 | 229 |
Msa0959420 | AT4G16740.2 | 31.818 | 374 | 219 | 7 | 12 | 352 | 21 | 391 | 2.73e-57 | 196 |
Msa0959420 | AT3G25820.2 | 30.964 | 394 | 208 | 10 | 15 | 360 | 45 | 422 | 2.48e-52 | 184 |
Msa0959420 | AT4G16740.4 | 32.198 | 323 | 180 | 7 | 14 | 301 | 23 | 341 | 4.92e-47 | 168 |
Msa0959420 | AT4G16740.3 | 32.198 | 323 | 180 | 7 | 14 | 301 | 23 | 341 | 4.92e-47 | 168 |
Msa0959420 | AT1G66020.2 | 29.810 | 369 | 221 | 7 | 17 | 350 | 56 | 421 | 2.32e-46 | 168 |
Msa0959420 | AT3G25820.4 | 31.437 | 334 | 167 | 8 | 15 | 301 | 45 | 363 | 5.18e-45 | 163 |
Msa0959420 | AT3G25820.3 | 31.437 | 334 | 167 | 8 | 15 | 301 | 45 | 363 | 5.18e-45 | 163 |
Msa0959420 | AT1G79460.1 | 23.359 | 518 | 327 | 19 | 69 | 527 | 273 | 779 | 9.48e-23 | 102 |
Msa0959420 | AT1G61120.1 | 21.918 | 511 | 336 | 11 | 68 | 527 | 286 | 784 | 1.62e-20 | 96.3 |
Find 80 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTCTCTTGCTGTGCTATTT+AGG | 0.103456 | 6_3:+76059200 | Msa0959420:CDS |
TCTACTTGCATTGGCAAAAT+TGG | 0.119753 | 6_3:+76060278 | Msa0959420:CDS |
TTCTCTTGCTGTGCTATTTA+GGG | 0.189824 | 6_3:+76059201 | Msa0959420:CDS |
GGTTCATGGTGAAAATATTT+TGG | 0.219650 | 6_3:+76060080 | Msa0959420:CDS |
TTTCCTTGCTTGAGAATATT+GGG | 0.241792 | 6_3:-76060563 | None:intergenic |
ATGCAAGTAGAATTTCATTA+TGG | 0.248221 | 6_3:-76060266 | None:intergenic |
AGAAGAAATTAGTCAAGTTT+TGG | 0.262222 | 6_3:+76059120 | Msa0959420:CDS |
TACAAGAGTTATGTTCAAAA+TGG | 0.269625 | 6_3:+76059151 | Msa0959420:CDS |
GTCATCAATGTATGATAAAA+TGG | 0.310334 | 6_3:-76060605 | None:intergenic |
CAGATTTCCACCCTAGCGTT+TGG | 0.311610 | 6_3:+76058744 | Msa0959420:CDS |
AGATTTCCACCCTAGCGTTT+GGG | 0.325288 | 6_3:+76058745 | Msa0959420:CDS |
TGCAAAACCGATTTCTCATT+AGG | 0.335406 | 6_3:-76058710 | None:intergenic |
TAATTGCTTGGAGGATCTTC+CGG | 0.335446 | 6_3:+76060970 | Msa0959420:CDS |
CTGCTATTCATTGCAGACTT+AGG | 0.335573 | 6_3:+76062043 | Msa0959420:CDS |
TGAGGGAATATGATATGAAT+AGG | 0.340079 | 6_3:+76062247 | Msa0959420:CDS |
TGTGCCGCAATATTCATATC+AGG | 0.348479 | 6_3:-76058980 | None:intergenic |
CTTCAATCCTAATGAGAAAT+CGG | 0.354762 | 6_3:+76058703 | Msa0959420:CDS |
TCAGTATGCTTCAGAATCTA+TGG | 0.376448 | 6_3:+76058781 | Msa0959420:CDS |
TGCAAGTAGAATTTCATTAT+GGG | 0.387262 | 6_3:-76060265 | None:intergenic |
CGTACTTGGAATGTTATATG+AGG | 0.388936 | 6_3:+76062229 | Msa0959420:CDS |
GGATGAATCTTGCTCATAGA+TGG | 0.390050 | 6_3:-76060244 | None:intergenic |
CAACAAAAGACATCTTTGAT+TGG | 0.390973 | 6_3:+76061989 | Msa0959420:CDS |
GATTGACTCGATATGTCGTT+TGG | 0.393872 | 6_3:+76059078 | Msa0959420:CDS |
AGAGCATGTTTCTTCGTACT+TGG | 0.400274 | 6_3:+76062215 | Msa0959420:CDS |
TAAAGCAACTTCGTGTAATC+CGG | 0.404734 | 6_3:-76060989 | None:intergenic |
GTTGCTTTATAAATCACTCT+TGG | 0.404999 | 6_3:+76061003 | Msa0959420:CDS |
TGCTATTCATTGCAGACTTA+GGG | 0.421274 | 6_3:+76062044 | Msa0959420:CDS |
TGCATGTACTCCGCTGTTGT+TGG | 0.426336 | 6_3:-76061898 | None:intergenic |
AACAAAAGACATCTTTGATT+GGG | 0.428042 | 6_3:+76061990 | Msa0959420:CDS |
TAGGTGGGATATTAATTGCT+TGG | 0.452782 | 6_3:+76060958 | Msa0959420:intron |
TACGACTTCTTACATTGGAA+TGG | 0.454510 | 6_3:+76061957 | Msa0959420:CDS |
TAATGAAATTCTACTTGCAT+TGG | 0.460272 | 6_3:+76060269 | Msa0959420:CDS |
ACGACTTCTTACATTGGAAT+GGG | 0.460983 | 6_3:+76061958 | Msa0959420:CDS |
GGACAAGATATGATGGTTCA+TGG | 0.466287 | 6_3:+76060066 | Msa0959420:intron |
TTCTGGTCACCTTCAGTCCA+TGG | 0.466911 | 6_3:+76060122 | Msa0959420:CDS |
GATGACACATATGATGCATA+TGG | 0.467097 | 6_3:+76060622 | Msa0959420:CDS |
GAGCAAGAAATGAAGAAAGA+AGG | 0.470516 | 6_3:+76061043 | Msa0959420:CDS |
GAGGGAATATGATATGAATA+GGG | 0.475500 | 6_3:+76062248 | Msa0959420:CDS |
AAAAGAAAATAGAAAACGCT+TGG | 0.479848 | 6_3:+76062292 | Msa0959420:CDS |
CGCTTGGAAAGATATAAATC+AGG | 0.485338 | 6_3:+76062308 | Msa0959420:CDS |
ATTGACTCGATATGTCGTTT+GGG | 0.487347 | 6_3:+76059079 | Msa0959420:CDS |
ATAGTTAGCATTCAACCATC+TGG | 0.489896 | 6_3:-76061872 | None:intergenic |
ATATTGGGGCTCAAAATATA+CGG | 0.495144 | 6_3:-76060548 | None:intergenic |
CATGGACTTTATGTTTCACC+TGG | 0.496318 | 6_3:+76059235 | Msa0959420:CDS |
TTGAGAACACACGTCAGAAT+AGG | 0.502783 | 6_3:-76062360 | None:intergenic |
ATATAGGTGGTGGAAGGAGT+TGG | 0.505587 | 6_3:+76060462 | Msa0959420:intron |
ATGACTCAATCGGGTGGCCA+TGG | 0.509233 | 6_3:-76060139 | None:intergenic |
TGCAAGAGAATGACTCAATC+GGG | 0.519865 | 6_3:-76060148 | None:intergenic |
TAACTTCTTGCCACTAGCCT+AGG | 0.521919 | 6_3:-76060216 | None:intergenic |
TAAGAAGTCGTAGCCAACAC+TGG | 0.522936 | 6_3:-76061946 | None:intergenic |
ATGATGTGCTAACCTTTCAA+TGG | 0.523871 | 6_3:-76060677 | None:intergenic |
TTGCAAGAGAATGACTCAAT+CGG | 0.526770 | 6_3:-76060149 | None:intergenic |
AATAAATGCTCAAATTTCCA+CGG | 0.527066 | 6_3:-76062481 | None:intergenic |
GTGGGATATTAATTGCTTGG+AGG | 0.529634 | 6_3:+76060961 | Msa0959420:CDS |
TGGCCTCACTCATATAAGCT+TGG | 0.531321 | 6_3:-76061852 | None:intergenic |
TTCCTTGCTTGAGAATATTG+GGG | 0.534381 | 6_3:-76060562 | None:intergenic |
AGCCCCAATATTCTCAAGCA+AGG | 0.547455 | 6_3:+76060560 | Msa0959420:CDS |
CTTATATGAGTGAGGCCAGA+TGG | 0.552296 | 6_3:+76061857 | Msa0959420:CDS |
ATAAATGCTCAAATTTCCAC+GGG | 0.561349 | 6_3:-76062480 | None:intergenic |
AATTCAAGGACAAGATATGA+TGG | 0.561510 | 6_3:+76060059 | Msa0959420:intron |
ATCGGGTGGCCATGGACTGA+AGG | 0.566605 | 6_3:-76060131 | None:intergenic |
ATAGGTAACGGAACTTCAGT+TGG | 0.566914 | 6_3:-76062342 | None:intergenic |
GTACTTGGAATGTTATATGA+GGG | 0.567173 | 6_3:+76062230 | Msa0959420:CDS |
CTTTGTATATAGGTGGTGGA+AGG | 0.567617 | 6_3:+76060456 | Msa0959420:intron |
ATCAAGTGGTTACCCAGTGT+TGG | 0.570889 | 6_3:+76061933 | Msa0959420:CDS |
TTGGCTACGACTTCTTACAT+TGG | 0.586299 | 6_3:+76061952 | Msa0959420:CDS |
ACTACTCTATCTCGTGCATA+CGG | 0.590301 | 6_3:-76060502 | None:intergenic |
CACATATCAACAATATCAAG+TGG | 0.594145 | 6_3:+76061919 | Msa0959420:CDS |
GATTTCCACCCTAGCGTTTG+GGG | 0.596026 | 6_3:+76058746 | Msa0959420:CDS |
TTTAGGGTGTTGAGACAACA+TGG | 0.599316 | 6_3:+76059217 | Msa0959420:CDS |
AATCTCCCCAAACGCTAGGG+TGG | 0.601357 | 6_3:-76058751 | None:intergenic |
TGATTTGCTTGTCAATCCCG+TGG | 0.603076 | 6_3:+76062464 | Msa0959420:CDS |
GATAACTACACACACTCTGA+CGG | 0.610210 | 6_3:+76062420 | Msa0959420:CDS |
AAGAAGTCGTAGCCAACACT+GGG | 0.613680 | 6_3:-76061945 | None:intergenic |
GGAACCTGATATGAATATTG+CGG | 0.628405 | 6_3:+76058976 | Msa0959420:intron |
AATCCAAGCTTATATGAGTG+AGG | 0.644710 | 6_3:+76061849 | Msa0959420:CDS |
GGATGAAATTGTGTCTAGCG+AGG | 0.663791 | 6_3:+76062065 | Msa0959420:CDS |
ACACACGTCAGAATAGGTAA+CGG | 0.688917 | 6_3:-76062354 | None:intergenic |
AAGAGAATGACTCAATCGGG+TGG | 0.693305 | 6_3:-76060145 | None:intergenic |
TAACTATACACCAACAACAG+CGG | 0.710034 | 6_3:+76061888 | Msa0959420:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTATATTAATTTTTAAAA+CGG | - | chr6_3:76062104-76062123 | None:intergenic | 0.0% |
!! | ATTTATAATTTATTCAACAA+TGG | + | chr6_3:76061171-76061190 | Msa0959420:intron | 10.0% |
!!! | ATTTCATTTTAAATTTTGTA+TGG | + | chr6_3:76061201-76061220 | Msa0959420:intron | 10.0% |
!!! | AAATATTTTTACATCATTTT+AGG | + | chr6_3:76061302-76061321 | Msa0959420:intron | 10.0% |
!! | ATGAGTAAATAAATAGTATA+AGG | - | chr6_3:76058934-76058953 | None:intergenic | 15.0% |
!! | ACAAATTGATAAACTAAAAA+AGG | + | chr6_3:76059000-76059019 | Msa0959420:CDS | 15.0% |
!!! | ACTTATTCTCATTTTTTTTA+AGG | + | chr6_3:76059271-76059290 | Msa0959420:intron | 15.0% |
!!! | CAGTTTTTATGTTTTTAATT+TGG | + | chr6_3:76059350-76059369 | Msa0959420:intron | 15.0% |
!! | TAATATTTGACTATATTCAT+GGG | + | chr6_3:76059463-76059482 | Msa0959420:intron | 15.0% |
!! | TAATATGAATGTCTAAAAAA+TGG | + | chr6_3:76059492-76059511 | Msa0959420:intron | 15.0% |
!!! | AATTCTTTTTTTACTAAAAG+TGG | - | chr6_3:76059522-76059541 | None:intergenic | 15.0% |
!! | GATAATAATTAAAAGAAATG+AGG | - | chr6_3:76059649-76059668 | None:intergenic | 15.0% |
!! | AATATTAATGTTATACATGT+AGG | + | chr6_3:76059816-76059835 | Msa0959420:intron | 15.0% |
!! | ATAAATTAATATGTCTCTAA+TGG | + | chr6_3:76059985-76060004 | Msa0959420:intron | 15.0% |
!!! | TATTTTTTGTCTTTGTATAT+AGG | + | chr6_3:76060446-76060465 | Msa0959420:intron | 15.0% |
!! | GATTAAAGATAAATTTCATA+TGG | - | chr6_3:76060756-76060775 | None:intergenic | 15.0% |
!!! | TCATAATGATATATTTTTCT+TGG | - | chr6_3:76061363-76061382 | None:intergenic | 15.0% |
!! | CTATCAAAGAATAAAAATTA+AGG | + | chr6_3:76061575-76061594 | Msa0959420:intron | 15.0% |
!! | TCATAAAATTAAGATTACAA+AGG | - | chr6_3:76061681-76061700 | None:intergenic | 15.0% |
!! | TTAACATCATTTAATTACAT+AGG | + | chr6_3:76061764-76061783 | Msa0959420:intron | 15.0% |
!! | AATTCTTTAAATCAACAACA+AGG | + | chr6_3:76058809-76058828 | Msa0959420:intron | 20.0% |
!! | AATTGATAAACTAAAAAAGG+AGG | + | chr6_3:76059003-76059022 | Msa0959420:CDS | 20.0% |
!! | GTAATATTTGACTATATTCA+TGG | + | chr6_3:76059462-76059481 | Msa0959420:intron | 20.0% |
!! | ATTGGATACATATTAGATAT+TGG | + | chr6_3:76059609-76059628 | Msa0959420:intron | 20.0% |
!!! | AAGATAATAATTTTTTGCCA+GGG | - | chr6_3:76059745-76059764 | None:intergenic | 20.0% |
!!! | AAAGATAATAATTTTTTGCC+AGG | - | chr6_3:76059746-76059765 | None:intergenic | 20.0% |
!! | AAGTTTCTTACTTAATAAGA+TGG | - | chr6_3:76059884-76059903 | None:intergenic | 20.0% |
!!! | ATTTTGTTTTAAATTAGGCA+GGG | - | chr6_3:76060374-76060393 | None:intergenic | 20.0% |
!!! | TATTTTGTTTTAAATTAGGC+AGG | - | chr6_3:76060375-76060394 | None:intergenic | 20.0% |
!! | ACAAAGACAAAAAATAGTAT+AGG | - | chr6_3:76060442-76060461 | None:intergenic | 20.0% |
!!! | TGAATTAGAACTTTTTACAA+AGG | + | chr6_3:76060654-76060673 | Msa0959420:CDS | 20.0% |
!!! | TTGCAATCAAAATGATTTTT+AGG | + | chr6_3:76060939-76060958 | Msa0959420:intron | 20.0% |
!!! | AATCAAAATGATTTTTAGGT+GGG | + | chr6_3:76060943-76060962 | Msa0959420:intron | 20.0% |
!!! | AATTTTGTATGGTTATCAAA+TGG | + | chr6_3:76061212-76061231 | Msa0959420:intron | 20.0% |
!! | TCATTATGAAGTTATTTGAT+TGG | + | chr6_3:76061374-76061393 | Msa0959420:intron | 20.0% |
!! | GATTAAATGCAATGTTAAAA+AGG | + | chr6_3:76061546-76061565 | Msa0959420:intron | 20.0% |
!! | TTTCTTTATACTTTAATCAG+TGG | + | chr6_3:76061707-76061726 | Msa0959420:intron | 20.0% |
!!! | TTTAATTACATAGGTCTTTT+TGG | + | chr6_3:76061773-76061792 | Msa0959420:intron | 20.0% |
!! | AGAAGAAATTAGTCAAGTTT+TGG | + | chr6_3:76059120-76059139 | Msa0959420:CDS | 25.0% |
! | TACAAGAGTTATGTTCAAAA+TGG | + | chr6_3:76059151-76059170 | Msa0959420:CDS | 25.0% |
!! | TAAGTTGAGATATATATACC+AGG | - | chr6_3:76059256-76059275 | None:intergenic | 25.0% |
!!! | ATGAGTGTCTTTTTTTTGAT+TGG | + | chr6_3:76059591-76059610 | Msa0959420:intron | 25.0% |
! | GACAATTCATAAAATATGCA+CGG | + | chr6_3:76059706-76059725 | Msa0959420:intron | 25.0% |
! | ATGGTTGTTTAATGTTATTG+TGG | + | chr6_3:76060004-76060023 | Msa0959420:intron | 25.0% |
! | TGCAAGTAGAATTTCATTAT+GGG | - | chr6_3:76060268-76060287 | None:intergenic | 25.0% |
! | ATGCAAGTAGAATTTCATTA+TGG | - | chr6_3:76060269-76060288 | None:intergenic | 25.0% |
! | TAATGAAATTCTACTTGCAT+TGG | + | chr6_3:76060269-76060288 | Msa0959420:CDS | 25.0% |
!! | TTCCAAATTCTTTTTGATGT+AGG | - | chr6_3:76060323-76060342 | None:intergenic | 25.0% |
!! | TTTTTGTCTTTGTATATAGG+TGG | + | chr6_3:76060449-76060468 | Msa0959420:intron | 25.0% |
!!! | AGTAGTAGAATGTTGTTTTT+GGG | + | chr6_3:76060519-76060538 | Msa0959420:CDS | 25.0% |
! | GTCATCAATGTATGATAAAA+TGG | - | chr6_3:76060608-76060627 | None:intergenic | 25.0% |
!!! | ATGGTTTTAACTCTAAAGTT+TGG | - | chr6_3:76060737-76060756 | None:intergenic | 25.0% |
!!! | CAATCAAAATGATTTTTAGG+TGG | + | chr6_3:76060942-76060961 | Msa0959420:intron | 25.0% |
!!! | ACTCTTACTTCTTTTAAGAA+GGG | - | chr6_3:76061088-76061107 | None:intergenic | 25.0% |
!!! | AACTCTTACTTCTTTTAAGA+AGG | - | chr6_3:76061089-76061108 | None:intergenic | 25.0% |
! | TATCCATTGTTATATGAACT+TGG | + | chr6_3:76061455-76061474 | Msa0959420:intron | 25.0% |
! | AAGAAAAATGTTTCATCATG+AGG | + | chr6_3:76061517-76061536 | Msa0959420:intron | 25.0% |
! | AACAAAAGACATCTTTGATT+GGG | + | chr6_3:76061990-76062009 | Msa0959420:CDS | 25.0% |
!! | AAGCGTTTTCTATTTTCTTT+TGG | - | chr6_3:76062293-76062312 | None:intergenic | 25.0% |
! | AAAAGAAAATAGAAAACGCT+TGG | + | chr6_3:76062292-76062311 | Msa0959420:CDS | 25.0% |
CTTCAATCCTAATGAGAAAT+CGG | + | chr6_3:76058703-76058722 | Msa0959420:CDS | 30.0% | |
! | GAATCTGGGATAATATTAAG+TGG | - | chr6_3:76058895-76058914 | None:intergenic | 30.0% |
AATGTGAGTAACTTGAATCT+GGG | - | chr6_3:76058909-76058928 | None:intergenic | 30.0% | |
AAATGTGAGTAACTTGAATC+TGG | - | chr6_3:76058910-76058929 | None:intergenic | 30.0% | |
!! | TGCATGTTTTGAATACATAC+AGG | + | chr6_3:76058955-76058974 | Msa0959420:intron | 30.0% |
TTAAAAACAGAGAAACCCTT+GGG | + | chr6_3:76059043-76059062 | Msa0959420:CDS | 30.0% | |
TAATAAGATGGCTACCATAT+GGG | - | chr6_3:76059872-76059891 | None:intergenic | 30.0% | |
TTAATAAGATGGCTACCATA+TGG | - | chr6_3:76059873-76059892 | None:intergenic | 30.0% | |
ATCATATCTTGTCCTTGAAT+TGG | - | chr6_3:76060060-76060079 | None:intergenic | 30.0% | |
AATTCAAGGACAAGATATGA+TGG | + | chr6_3:76060059-76060078 | Msa0959420:intron | 30.0% | |
! | GGTTCATGGTGAAAATATTT+TGG | + | chr6_3:76060080-76060099 | Msa0959420:CDS | 30.0% |
!! | TGGTGAAAATATTTTGGAAG+AGG | + | chr6_3:76060086-76060105 | Msa0959420:CDS | 30.0% |
!! | AAATATTTTGGAAGAGGCTT+TGG | + | chr6_3:76060092-76060111 | Msa0959420:CDS | 30.0% |
AGCCTACATCAAAAAGAATT+TGG | + | chr6_3:76060318-76060337 | Msa0959420:CDS | 30.0% | |
!!! | GAGTAGTAGAATGTTGTTTT+TGG | + | chr6_3:76060518-76060537 | Msa0959420:CDS | 30.0% |
ATATTGGGGCTCAAAATATA+CGG | - | chr6_3:76060551-76060570 | None:intergenic | 30.0% | |
TTTCCTTGCTTGAGAATATT+GGG | - | chr6_3:76060566-76060585 | None:intergenic | 30.0% | |
! | TTTTCCTTGCTTGAGAATAT+TGG | - | chr6_3:76060567-76060586 | None:intergenic | 30.0% |
! | TTTTTACAAAGGCCATTGAA+AGG | + | chr6_3:76060665-76060684 | Msa0959420:CDS | 30.0% |
CTAGTCATCAAGTTTAGATT+TGG | + | chr6_3:76060775-76060794 | Msa0959420:intron | 30.0% | |
AATTTAACCATCTCCAATCT+TGG | + | chr6_3:76060820-76060839 | Msa0959420:intron | 30.0% | |
ATTGAATTAGCAACCAAGAT+TGG | - | chr6_3:76060836-76060855 | None:intergenic | 30.0% | |
! | GTTGCTTTATAAATCACTCT+TGG | + | chr6_3:76061003-76061022 | Msa0959420:CDS | 30.0% |
!! | CTCTTACTTCTTTTAAGAAG+GGG | - | chr6_3:76061087-76061106 | None:intergenic | 30.0% |
! | TTTTCTTGGTCAAGTTATCT+AGG | - | chr6_3:76061349-76061368 | None:intergenic | 30.0% |
GAACCAAGTTCATATAACAA+TGG | - | chr6_3:76061461-76061480 | None:intergenic | 30.0% | |
AGGCAAAAACTTATTATCCA+TGG | + | chr6_3:76061595-76061614 | Msa0959420:intron | 30.0% | |
CACATATCAACAATATCAAG+TGG | + | chr6_3:76061919-76061938 | Msa0959420:CDS | 30.0% | |
CAACAAAAGACATCTTTGAT+TGG | + | chr6_3:76061989-76062008 | Msa0959420:CDS | 30.0% | |
GTACTTGGAATGTTATATGA+GGG | + | chr6_3:76062230-76062249 | Msa0959420:CDS | 30.0% | |
TGAGGGAATATGATATGAAT+AGG | + | chr6_3:76062247-76062266 | Msa0959420:CDS | 30.0% | |
GAGGGAATATGATATGAATA+GGG | + | chr6_3:76062248-76062267 | Msa0959420:CDS | 30.0% | |
! | TGCAAAACCGATTTCTCATT+AGG | - | chr6_3:76058713-76058732 | None:intergenic | 35.0% |
TCAGTATGCTTCAGAATCTA+TGG | + | chr6_3:76058781-76058800 | Msa0959420:CDS | 35.0% | |
GGAACCTGATATGAATATTG+CGG | + | chr6_3:76058976-76058995 | Msa0959420:intron | 35.0% | |
CTTAAAAACAGAGAAACCCT+TGG | + | chr6_3:76059042-76059061 | Msa0959420:CDS | 35.0% | |
!!! | ATCAAGTTGACTTTTCCCAA+GGG | - | chr6_3:76059061-76059080 | None:intergenic | 35.0% |
!!! | AATCAAGTTGACTTTTCCCA+AGG | - | chr6_3:76059062-76059081 | None:intergenic | 35.0% |
!! | ATTGACTCGATATGTCGTTT+GGG | + | chr6_3:76059079-76059098 | Msa0959420:CDS | 35.0% |
!! | ATTCTCTTGCTGTGCTATTT+AGG | + | chr6_3:76059200-76059219 | Msa0959420:CDS | 35.0% |
!! | TTCTCTTGCTGTGCTATTTA+GGG | + | chr6_3:76059201-76059220 | Msa0959420:CDS | 35.0% |
TTTCGTGAGCTTAATTCAGT+TGG | + | chr6_3:76059679-76059698 | Msa0959420:intron | 35.0% | |
TGAGCTTAATTCAGTTGGTT+TGG | + | chr6_3:76059684-76059703 | Msa0959420:intron | 35.0% | |
TTGCAAGAGAATGACTCAAT+CGG | - | chr6_3:76060152-76060171 | None:intergenic | 35.0% | |
! | TCTACTTGCATTGGCAAAAT+TGG | + | chr6_3:76060278-76060297 | Msa0959420:CDS | 35.0% |
TTGTCTTTGTATATAGGTGG+TGG | + | chr6_3:76060452-76060471 | Msa0959420:intron | 35.0% | |
TTCCTTGCTTGAGAATATTG+GGG | - | chr6_3:76060565-76060584 | None:intergenic | 35.0% | |
GATGACACATATGATGCATA+TGG | + | chr6_3:76060622-76060641 | Msa0959420:CDS | 35.0% | |
ATGATGTGCTAACCTTTCAA+TGG | - | chr6_3:76060680-76060699 | None:intergenic | 35.0% | |
TAGGTGGGATATTAATTGCT+TGG | + | chr6_3:76060958-76060977 | Msa0959420:intron | 35.0% | |
TAAAGCAACTTCGTGTAATC+CGG | - | chr6_3:76060992-76061011 | None:intergenic | 35.0% | |
GAGCAAGAAATGAAGAAAGA+AGG | + | chr6_3:76061043-76061062 | Msa0959420:CDS | 35.0% | |
!! | TTCTTTTAAGAAGGGGTCAA+GGG | - | chr6_3:76061080-76061099 | None:intergenic | 35.0% |
TGGTTATCAAATGGACGTTT+AGG | + | chr6_3:76061221-76061240 | Msa0959420:intron | 35.0% | |
GAACTGAGTTCATATAACCA+TGG | - | chr6_3:76061615-76061634 | None:intergenic | 35.0% | |
AATCCAAGCTTATATGAGTG+AGG | + | chr6_3:76061849-76061868 | Msa0959420:CDS | 35.0% | |
ATAGTTAGCATTCAACCATC+TGG | - | chr6_3:76061875-76061894 | None:intergenic | 35.0% | |
TAACTATACACCAACAACAG+CGG | + | chr6_3:76061888-76061907 | Msa0959420:CDS | 35.0% | |
TACGACTTCTTACATTGGAA+TGG | + | chr6_3:76061957-76061976 | Msa0959420:CDS | 35.0% | |
ACGACTTCTTACATTGGAAT+GGG | + | chr6_3:76061958-76061977 | Msa0959420:CDS | 35.0% | |
! | GCAGCAGCATTAACAATTTT+TGG | - | chr6_3:76062027-76062046 | None:intergenic | 35.0% |
TGCTATTCATTGCAGACTTA+GGG | + | chr6_3:76062044-76062063 | Msa0959420:CDS | 35.0% | |
CGTACTTGGAATGTTATATG+AGG | + | chr6_3:76062229-76062248 | Msa0959420:CDS | 35.0% | |
CGCTTGGAAAGATATAAATC+AGG | + | chr6_3:76062308-76062327 | Msa0959420:CDS | 35.0% | |
AAAAATCTCCCCAAACGCTA+GGG | - | chr6_3:76058757-76058776 | None:intergenic | 40.0% | |
AAAAAATCTCCCCAAACGCT+AGG | - | chr6_3:76058758-76058777 | None:intergenic | 40.0% | |
TGTGCCGCAATATTCATATC+AGG | - | chr6_3:76058983-76059002 | None:intergenic | 40.0% | |
!! | GATTGACTCGATATGTCGTT+TGG | + | chr6_3:76059078-76059097 | Msa0959420:CDS | 40.0% |
!! | TTTAGGGTGTTGAGACAACA+TGG | + | chr6_3:76059217-76059236 | Msa0959420:CDS | 40.0% |
CATGGACTTTATGTTTCACC+TGG | + | chr6_3:76059235-76059254 | Msa0959420:CDS | 40.0% | |
TCATAAAATATGCACGGTCC+AGG | + | chr6_3:76059712-76059731 | Msa0959420:intron | 40.0% | |
CATAAAATATGCACGGTCCA+GGG | + | chr6_3:76059713-76059732 | Msa0959420:intron | 40.0% | |
CTTAGACCAGTTTACCCATA+TGG | + | chr6_3:76059855-76059874 | Msa0959420:intron | 40.0% | |
AGACGTGTTCAACCAATTCA+AGG | + | chr6_3:76060045-76060064 | Msa0959420:intron | 40.0% | |
GGACAAGATATGATGGTTCA+TGG | + | chr6_3:76060066-76060085 | Msa0959420:intron | 40.0% | |
TGCAAGAGAATGACTCAATC+GGG | - | chr6_3:76060151-76060170 | None:intergenic | 40.0% | |
GGATGAATCTTGCTCATAGA+TGG | - | chr6_3:76060247-76060266 | None:intergenic | 40.0% | |
!! | CTTTGTATATAGGTGGTGGA+AGG | + | chr6_3:76060456-76060475 | Msa0959420:intron | 40.0% |
ACTACTCTATCTCGTGCATA+CGG | - | chr6_3:76060505-76060524 | None:intergenic | 40.0% | |
TTAGCAACCAAGATTGGAGA+TGG | - | chr6_3:76060830-76060849 | None:intergenic | 40.0% | |
GTGGGATATTAATTGCTTGG+AGG | + | chr6_3:76060961-76060980 | Msa0959420:CDS | 40.0% | |
TAATTGCTTGGAGGATCTTC+CGG | + | chr6_3:76060970-76060989 | Msa0959420:CDS | 40.0% | |
!! | CTTCTTTTAAGAAGGGGTCA+AGG | - | chr6_3:76061081-76061100 | None:intergenic | 40.0% |
TTGGCTACGACTTCTTACAT+TGG | + | chr6_3:76061952-76061971 | Msa0959420:CDS | 40.0% | |
CTGCTATTCATTGCAGACTT+AGG | + | chr6_3:76062043-76062062 | Msa0959420:CDS | 40.0% | |
AGAGCATGTTTCTTCGTACT+TGG | + | chr6_3:76062215-76062234 | Msa0959420:CDS | 40.0% | |
!! | ATAGGTAACGGAACTTCAGT+TGG | - | chr6_3:76062345-76062364 | None:intergenic | 40.0% |
ACACACGTCAGAATAGGTAA+CGG | - | chr6_3:76062357-76062376 | None:intergenic | 40.0% | |
TTGAGAACACACGTCAGAAT+AGG | - | chr6_3:76062363-76062382 | None:intergenic | 40.0% | |
!! | CAATCTCTCGCGTTTTATTG+AGG | + | chr6_3:76062380-76062399 | Msa0959420:CDS | 40.0% |
GATAACTACACACACTCTGA+CGG | + | chr6_3:76062420-76062439 | Msa0959420:CDS | 40.0% | |
AGATTTCCACCCTAGCGTTT+GGG | + | chr6_3:76058745-76058764 | Msa0959420:CDS | 45.0% | |
TGGCTACCATATGGGTAAAC+TGG | - | chr6_3:76059864-76059883 | None:intergenic | 45.0% | |
!!! | GAGGCTTTGGCTTTTACTTC+TGG | + | chr6_3:76060105-76060124 | Msa0959420:CDS | 45.0% |
AAGAGAATGACTCAATCGGG+TGG | - | chr6_3:76060148-76060167 | None:intergenic | 45.0% | |
CAAAAACTTGCCTAGGCTAG+TGG | + | chr6_3:76060206-76060225 | Msa0959420:CDS | 45.0% | |
! | TAACTTCTTGCCACTAGCCT+AGG | - | chr6_3:76060219-76060238 | None:intergenic | 45.0% |
!! | GTTTTAAATTAGGCAGGGCG+TGG | - | chr6_3:76060369-76060388 | None:intergenic | 45.0% |
!! | ATATAGGTGGTGGAAGGAGT+TGG | + | chr6_3:76060462-76060481 | Msa0959420:intron | 45.0% |
AGCCCCAATATTCTCAAGCA+AGG | + | chr6_3:76060560-76060579 | Msa0959420:CDS | 45.0% | |
TGGCCTCACTCATATAAGCT+TGG | - | chr6_3:76061855-76061874 | None:intergenic | 45.0% | |
CTTATATGAGTGAGGCCAGA+TGG | + | chr6_3:76061857-76061876 | Msa0959420:CDS | 45.0% | |
ATCAAGTGGTTACCCAGTGT+TGG | + | chr6_3:76061933-76061952 | Msa0959420:CDS | 45.0% | |
AAGAAGTCGTAGCCAACACT+GGG | - | chr6_3:76061948-76061967 | None:intergenic | 45.0% | |
TAAGAAGTCGTAGCCAACAC+TGG | - | chr6_3:76061949-76061968 | None:intergenic | 45.0% | |
GGATGAAATTGTGTCTAGCG+AGG | + | chr6_3:76062065-76062084 | Msa0959420:CDS | 45.0% | |
!! | TGATTTGCTTGTCAATCCCG+TGG | + | chr6_3:76062464-76062483 | Msa0959420:CDS | 45.0% |
!!! | TTTATATTTTGTTTTAAATT+AGG | - | chr6_3:76060379-76060398 | None:intergenic | 5.0% |
CAGATTTCCACCCTAGCGTT+TGG | + | chr6_3:76058744-76058763 | Msa0959420:CDS | 50.0% | |
GATTTCCACCCTAGCGTTTG+GGG | + | chr6_3:76058746-76058765 | Msa0959420:CDS | 50.0% | |
! | TTTTGCCAGGGTTTGAACCC+TGG | - | chr6_3:76059733-76059752 | None:intergenic | 50.0% |
TTCTGGTCACCTTCAGTCCA+TGG | + | chr6_3:76060122-76060141 | Msa0959420:CDS | 50.0% | |
CTCTGCGCAAAAACTTGCCT+AGG | + | chr6_3:76060199-76060218 | Msa0959420:CDS | 50.0% | |
TGCATGTACTCCGCTGTTGT+TGG | - | chr6_3:76061901-76061920 | None:intergenic | 50.0% | |
AATCTCCCCAAACGCTAGGG+TGG | - | chr6_3:76058754-76058773 | None:intergenic | 55.0% | |
ATGACTCAATCGGGTGGCCA+TGG | - | chr6_3:76060142-76060161 | None:intergenic | 55.0% | |
ACGGTCCAGGGTTCAAACCC+TGG | + | chr6_3:76059725-76059744 | Msa0959420:intron | 60.0% | |
! | ATCGGGTGGCCATGGACTGA+AGG | - | chr6_3:76060134-76060153 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_3 | gene | 76058686 | 76062494 | 76058686 | ID=Msa0959420;Name=Msa0959420 |
chr6_3 | mRNA | 76058686 | 76062494 | 76058686 | ID=Msa0959420-mRNA-1;Parent=Msa0959420;Name=Msa0959420-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|7|0|527 |
chr6_3 | exon | 76058686 | 76058802 | 76058686 | ID=Msa0959420-mRNA-1:exon:13657;Parent=Msa0959420-mRNA-1 |
chr6_3 | exon | 76058977 | 76059256 | 76058977 | ID=Msa0959420-mRNA-1:exon:13658;Parent=Msa0959420-mRNA-1 |
chr6_3 | exon | 76060067 | 76060352 | 76060067 | ID=Msa0959420-mRNA-1:exon:13659;Parent=Msa0959420-mRNA-1 |
chr6_3 | exon | 76060468 | 76060686 | 76060468 | ID=Msa0959420-mRNA-1:exon:13660;Parent=Msa0959420-mRNA-1 |
chr6_3 | exon | 76060961 | 76061099 | 76060961 | ID=Msa0959420-mRNA-1:exon:13661;Parent=Msa0959420-mRNA-1 |
chr6_3 | exon | 76061838 | 76062086 | 76061838 | ID=Msa0959420-mRNA-1:exon:13662;Parent=Msa0959420-mRNA-1 |
chr6_3 | exon | 76062201 | 76062494 | 76062201 | ID=Msa0959420-mRNA-1:exon:13663;Parent=Msa0959420-mRNA-1 |
chr6_3 | CDS | 76058686 | 76058802 | 76058686 | ID=Msa0959420-mRNA-1:cds;Parent=Msa0959420-mRNA-1 |
chr6_3 | CDS | 76058977 | 76059256 | 76058977 | ID=Msa0959420-mRNA-1:cds;Parent=Msa0959420-mRNA-1 |
chr6_3 | CDS | 76060067 | 76060352 | 76060067 | ID=Msa0959420-mRNA-1:cds;Parent=Msa0959420-mRNA-1 |
chr6_3 | CDS | 76060468 | 76060686 | 76060468 | ID=Msa0959420-mRNA-1:cds;Parent=Msa0959420-mRNA-1 |
chr6_3 | CDS | 76060961 | 76061099 | 76060961 | ID=Msa0959420-mRNA-1:cds;Parent=Msa0959420-mRNA-1 |
chr6_3 | CDS | 76061838 | 76062086 | 76061838 | ID=Msa0959420-mRNA-1:cds;Parent=Msa0959420-mRNA-1 |
chr6_3 | CDS | 76062201 | 76062494 | 76062201 | ID=Msa0959420-mRNA-1:cds;Parent=Msa0959420-mRNA-1 |
Gene Sequence |
Protein sequence |