AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0920900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0920900 MtrunA17_Chr7g0236991 68.750 480 146 1 29 504 74 553 0.0 707
Msa0920900 MtrunA17_Chr7g0236961 68.542 480 147 1 29 504 19 498 0.0 707
Msa0920900 MtrunA17_Chr7g0237001 68.542 480 147 1 29 504 74 553 0.0 706
Msa0920900 MtrunA17_Chr7g0237041 68.542 480 147 1 29 504 74 553 0.0 706
Msa0920900 MtrunA17_Chr7g0237081 68.542 480 147 1 29 504 74 553 0.0 706
Msa0920900 MtrunA17_Chr7g0237051 68.542 480 147 1 29 504 74 553 0.0 706
Msa0920900 MtrunA17_Chr7g0237011 68.542 480 147 1 29 504 19 498 0.0 705
Msa0920900 MtrunA17_Chr6g0466051 69.167 480 144 1 29 504 74 553 0.0 703
Msa0920900 MtrunA17_Chr6g0465911 68.958 480 145 1 29 504 74 553 0.0 701
Msa0920900 MtrunA17_Chr6g0465851 68.958 480 145 1 29 504 39 518 0.0 701
Msa0920900 MtrunA17_Chr5g0425371 67.708 480 151 1 29 504 74 553 0.0 687
Msa0920900 MtrunA17_Chr6g0465441 67.292 480 153 1 29 504 74 553 0.0 684
Msa0920900 MtrunA17_Chr3g0082691 66.320 481 157 2 29 504 73 553 0.0 676
Msa0920900 MtrunA17_Chr6g0451711 63.095 504 182 1 5 504 54 557 0.0 670
Msa0920900 MtrunA17_Chr3g0105071 64.865 481 164 2 29 504 77 557 0.0 662
Msa0920900 MtrunA17_Chr4g0024691 65.625 480 161 1 29 504 82 561 0.0 662
Msa0920900 MtrunA17_Chr5g0431571 65.696 481 160 2 29 504 69 549 0.0 655
Msa0920900 MtrunA17_Chr5g0431651 64.657 481 165 2 29 504 72 552 0.0 654
Msa0920900 MtrunA17_Chr4g0042111 58.368 478 195 1 31 504 85 562 0.0 597
Msa0920900 MtrunA17_Chr7g0236971 67.830 401 125 1 108 504 1 401 0.0 584
Msa0920900 MtrunA17_Chr6g0465931 72.667 300 78 1 29 324 39 338 4.67e-159 455
Msa0920900 MtrunA17_Chr6g0466111 72.667 300 78 1 29 324 39 338 9.91e-159 454
Msa0920900 MtrunA17_Chr6g0465981 72.667 300 78 1 29 324 74 373 2.16e-158 454
Msa0920900 MtrunA17_Chr6g0465871 72.667 300 78 1 29 324 74 373 2.16e-158 454
Msa0920900 MtrunA17_Chr6g0466081 72.667 300 78 1 29 324 74 373 2.16e-158 454
Msa0920900 MtrunA17_Chr7g0236951 70.508 295 83 1 29 319 19 313 3.77e-155 444
Msa0920900 MtrunA17_Chr7g0237031 70.508 295 83 1 29 319 19 313 1.34e-154 443
Msa0920900 MtrunA17_Chr8g0336181 45.155 485 255 5 29 504 74 556 1.33e-152 447
Msa0920900 MtrunA17_Chr2g0319051 43.595 484 263 6 29 504 33 514 3.60e-151 441
Msa0920900 MtrunA17_Chr2g0319041 44.856 486 256 8 29 504 74 557 1.70e-148 436
Msa0920900 MtrunA17_Chr6g0466031 63.846 260 94 0 245 504 1 260 1.33e-119 351
Msa0920900 MtrunA17_Chr5g0445511 64.435 239 81 1 103 337 1 239 2.68e-109 324
Msa0920900 MtrunA17_Chr7g0237061 60.769 260 79 2 245 504 1 237 2.04e-107 319
Msa0920900 MtrunA17_Chr2g0319071 36.722 482 251 10 29 502 52 487 2.17e-105 323
Msa0920900 MtrunA17_Chr4g0023911 35.849 477 301 2 31 502 103 579 8.09e-104 322
Msa0920900 MtrunA17_Chr4g0008621 45.401 337 177 3 29 358 82 418 3.11e-102 313
Msa0920900 MtrunA17_Chr2g0310331 36.100 482 294 6 28 502 110 584 4.51e-94 297
Msa0920900 MtrunA17_Chr2g0323151 34.858 459 280 5 32 482 13 460 1.02e-92 290
Msa0920900 MtrunA17_Chr2g0323131 34.490 461 282 6 31 482 96 545 5.08e-90 286
Msa0920900 MtrunA17_Chr8g0357411 34.096 481 306 5 28 502 112 587 4.85e-84 271
Msa0920900 MtrunA17_Chr7g0237021 67.442 172 56 0 333 504 1 172 1.23e-83 256
Msa0920900 MtrunA17_Chr7g0236941 67.442 172 56 0 333 504 1 172 1.23e-83 256
Msa0920900 MtrunA17_Chr7g0237071 66.848 184 57 1 29 208 19 202 9.61e-82 253
Msa0920900 MtrunA17_Chr4g0048921 33.403 479 308 5 31 502 95 569 4.70e-81 263
Msa0920900 MtrunA17_Chr4g0048911 30.146 481 311 6 31 496 86 556 5.92e-78 254
Msa0920900 MtrunA17_Chr6g0465941 62.791 172 64 0 333 504 1 172 1.62e-76 238
Msa0920900 MtrunA17_Chr6g0466121 62.791 172 64 0 333 504 1 172 1.62e-76 238
Msa0920900 MtrunA17_Chr6g0465991 62.791 172 64 0 333 504 1 172 1.62e-76 238
Msa0920900 MtrunA17_Chr6g0466091 62.791 172 64 0 333 504 1 172 1.62e-76 238
Msa0920900 MtrunA17_Chr5g0445501 62.209 172 65 0 333 504 1 172 5.39e-76 236
Msa0920900 MtrunA17_Chr6g0465881 62.209 172 65 0 333 504 1 172 8.74e-76 236
Msa0920900 MtrunA17_Chr2g0319081 38.532 327 179 8 181 504 120 427 8.73e-74 239
Msa0920900 MtrunA17_Chr7g0236921 63.291 158 54 1 351 504 1 158 1.31e-69 219
Msa0920900 MtrunA17_Chr2g0310401 32.243 428 281 5 82 502 5 430 7.67e-69 226
Msa0920900 MtrunA17_Chr2g0280581 29.132 484 324 8 28 495 38 518 3.01e-65 219
Msa0920900 MtrunA17_Chr7g0236931 60.390 154 58 1 351 504 1 151 4.92e-64 204
Msa0920900 MtrunA17_Chr3g0108941 28.157 483 332 9 28 498 34 513 1.44e-61 210
Msa0920900 MtrunA17_Chr3g0105691 28.755 466 320 7 28 482 67 531 3.49e-61 209
Msa0920900 MtrunA17_Chr3g0109031 28.510 463 315 8 28 477 34 493 1.80e-60 207
Msa0920900 MtrunA17_Chr3g0108981 28.726 463 315 6 28 477 9 469 1.92e-60 206
Msa0920900 MtrunA17_Chr3g0108961 28.726 463 315 6 28 477 9 469 1.92e-60 206
Msa0920900 MtrunA17_Chr6g0477111 28.118 473 324 8 28 487 9 478 3.74e-60 205
Msa0920900 MtrunA17_Chr3g0109021 28.726 463 314 8 28 477 34 493 8.22e-60 205
Msa0920900 MtrunA17_Chr3g0109001 28.233 464 316 8 28 477 34 494 1.07e-58 202
Msa0920900 MtrunA17_Chr3g0108971 27.983 461 320 8 28 477 9 468 4.77e-58 200
Msa0920900 MtrunA17_Chr3g0108991 27.983 461 320 8 28 477 34 493 8.38e-58 200
Msa0920900 MtrunA17_Chr3g0108951 27.983 461 320 8 28 477 34 493 8.38e-58 200
Msa0920900 MtrunA17_Chr3g0109011 28.078 463 317 8 28 477 9 468 1.39e-57 199
Msa0920900 MtrunA17_Chr6g0466021 71.875 128 32 1 29 152 74 201 3.00e-57 189
Msa0920900 MtrunA17_Chr3g0099031 28.216 482 332 8 28 498 34 512 9.26e-57 197
Msa0920900 MtrunA17_Chr7g0233861 65.185 135 38 1 144 278 33 158 1.16e-53 179
Msa0920900 MtrunA17_Chr6g0477121 28.395 405 275 7 85 477 10 411 6.15e-53 184
Msa0920900 MtrunA17_Chr7g0217361 32.000 300 203 1 203 501 8 307 3.33e-46 163
Msa0920900 MtrunA17_Chr3g0082711 49.138 116 42 1 389 504 1 99 1.13e-32 120
Msa0920900 MtrunA17_Chr8g0357231 28.682 258 182 2 246 502 1 257 1.37e-32 125
Msa0920900 MtrunA17_Chr3g0101681 24.466 515 331 15 29 502 283 780 1.74e-32 132
Msa0920900 MtrunA17_Chr5g0445401 65.957 94 26 1 118 205 1 94 9.68e-32 117
Msa0920900 MtrunA17_Chr8g0357221 39.891 183 101 3 28 205 112 290 4.46e-31 122
Msa0920900 MtrunA17_Chr2g0310121 26.273 373 236 10 29 369 282 647 3.54e-30 125
Msa0920900 MtrunA17_Chr7g0259881 26.894 264 161 5 29 261 236 498 1.39e-21 98.6
Msa0920900 MtrunA17_Chr7g0218001 29.434 265 151 6 29 258 353 616 3.18e-21 97.4
Msa0920900 MtrunA17_Chr7g0236981 66.102 59 20 0 29 87 74 132 4.25e-21 89.7
Msa0920900 MtrunA17_Chr2g0281651 24.272 309 221 8 181 483 43 344 2.76e-18 87.0
Msa0920900 MtrunA17_Chr7g0217351 31.522 184 114 5 31 206 94 273 6.01e-17 81.6
Msa0920900 MtrunA17_Chr7g0218041 28.692 237 140 5 72 280 3 238 8.85e-13 70.1
Msa0920900 MtrunA17_Chr4g0008631 36.145 83 51 2 423 504 1 82 6.52e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0920900 AT5G23960.2 39.419 482 284 4 29 504 66 545 5.61e-128 384
Msa0920900 AT5G23960.1 39.381 485 282 6 29 504 66 547 6.28e-127 381
Msa0920900 AT1G70080.1 37.988 487 290 6 29 504 126 611 1.89e-118 361
Msa0920900 AT3G14490.1 37.449 486 292 4 28 504 119 601 1.69e-113 348
Msa0920900 AT3G14520.1 36.128 501 306 6 15 504 107 604 4.66e-111 342
Msa0920900 AT1G31950.3 35.529 501 309 5 15 504 110 607 1.44e-108 335
Msa0920900 AT1G31950.1 35.529 501 309 5 15 504 109 606 1.66e-108 335
Msa0920900 AT3G14540.1 36.200 500 307 4 15 504 104 601 2.82e-108 335
Msa0920900 AT3G29410.2 34.314 510 315 4 1 504 3 498 5.47e-107 328
Msa0920900 AT3G29410.1 34.314 510 315 4 1 504 108 603 1.29e-105 328
Msa0920900 AT4G20210.1 33.858 508 317 6 12 504 97 600 1.47e-105 328
Msa0920900 AT4G20200.1 35.451 488 299 7 28 504 122 604 2.68e-105 327
Msa0920900 AT5G44630.1 35.282 479 300 3 32 502 79 555 3.30e-105 325
Msa0920900 AT1G33750.1 33.594 512 315 6 1 504 109 603 9.32e-101 315
Msa0920900 AT4G13300.1 34.021 485 308 5 29 504 73 554 1.18e-99 311
Msa0920900 AT3G32030.1 33.196 485 314 4 28 504 122 604 9.35e-99 310
Msa0920900 AT3G29190.1 33.129 489 309 6 28 504 119 601 1.69e-98 309
Msa0920900 AT4G13280.2 33.403 479 307 5 35 504 79 554 3.45e-98 307
Msa0920900 AT4G15870.1 33.745 486 298 6 28 504 128 598 2.51e-97 306
Msa0920900 AT4G20230.1 32.613 509 323 7 8 500 97 601 5.46e-96 303
Msa0920900 AT4G20230.2 32.613 509 323 7 8 500 109 613 1.10e-95 303
Msa0920900 AT3G14540.2 37.931 406 241 3 15 411 104 507 7.18e-92 289
Msa0920900 AT3G29110.1 34.161 483 308 5 28 502 115 595 1.18e-91 291
Msa0920900 AT1G66020.1 32.990 485 315 4 28 504 116 598 5.24e-91 290
Msa0920900 AT1G31950.2 37.221 403 240 4 15 407 110 509 1.15e-90 287
Msa0920900 AT2G23230.2 34.091 484 303 7 28 499 116 595 8.32e-90 287
Msa0920900 AT4G13280.1 32.150 479 283 6 35 504 79 524 9.37e-88 279
Msa0920900 AT2G23230.1 33.884 484 299 8 28 499 116 590 1.74e-87 281
Msa0920900 AT1G48800.1 31.546 485 315 7 28 500 123 602 3.56e-85 275
Msa0920900 AT4G16730.2 32.129 498 307 9 29 504 5 493 5.62e-85 271
Msa0920900 AT4G16730.1 32.129 498 307 9 29 504 51 539 1.64e-84 271
Msa0920900 AT5G48110.1 37.318 343 210 5 163 504 1 339 1.69e-82 259
Msa0920900 AT1G61680.1 32.285 477 307 5 28 494 99 569 2.85e-79 258
Msa0920900 AT4G16740.1 31.911 492 308 10 29 504 84 564 1.44e-76 251
Msa0920900 AT2G24210.1 31.440 493 314 10 29 504 105 590 3.31e-76 251
Msa0920900 AT1G61680.2 31.866 477 302 6 28 494 99 562 8.33e-76 249
Msa0920900 AT3G25810.1 30.181 497 320 8 29 504 107 597 7.97e-73 242
Msa0920900 AT1G48820.1 30.417 480 282 9 28 497 120 557 3.93e-72 239
Msa0920900 AT3G25820.1 30.162 494 322 12 29 504 106 594 1.22e-68 231
Msa0920900 AT3G25830.1 30.162 494 322 12 29 504 106 594 1.22e-68 231
Msa0920900 AT1G66020.2 35.435 333 200 5 8 327 91 421 2.70e-62 210
Msa0920900 AT4G16740.2 35.061 328 192 5 16 329 71 391 8.79e-59 199
Msa0920900 AT3G25820.2 33.333 321 198 8 29 337 106 422 8.06e-52 182
Msa0920900 AT4G16740.4 36.364 264 148 4 29 278 84 341 3.39e-48 171
Msa0920900 AT4G16740.3 36.364 264 148 4 29 278 84 341 3.39e-48 171
Msa0920900 AT3G25820.4 34.483 261 157 6 29 278 106 363 3.00e-44 160
Msa0920900 AT3G25820.3 34.483 261 157 6 29 278 106 363 3.00e-44 160
Msa0920900 AT1G79460.1 24.715 526 338 21 21 504 270 779 1.24e-29 123
Msa0920900 AT1G61120.1 22.846 499 348 10 33 504 296 784 6.42e-24 106
Msa0920900 AT4G02780.1 29.084 251 146 5 29 248 338 587 4.81e-20 94.4

Find 96 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCTTGCTGTGCTATTT+AGG 0.103456 6_2:-56655004 Msa0920900:CDS
TCTACTTGCATTGGCAAAAT+TGG 0.119753 6_2:-56653880 Msa0920900:CDS
TTCTCTTGCTGTGCTATTTA+GGG 0.189824 6_2:-56655003 Msa0920900:CDS
GGTTCATGGTGAAAATATTT+TGG 0.219650 6_2:-56654077 Msa0920900:CDS
TTTCCTTGCTTGAGAATATT+GGG 0.241792 6_2:+56653595 None:intergenic
ATGCAAGTAGAATTTCATTA+TGG 0.248221 6_2:+56653892 None:intergenic
AGAAGAAATTAGTCAAGTTT+TGG 0.262222 6_2:-56655084 Msa0920900:CDS
TACAAGAGTTATGTTCAAAA+TGG 0.269625 6_2:-56655053 Msa0920900:CDS
ACAAATCAGATCGCAATAAA+AGG 0.298756 6_2:-56656456 Msa0920900:CDS
GTCATCAATGTATGATAAAA+TGG 0.310334 6_2:+56653553 None:intergenic
TAATTGCTTGGAGGATCTTC+CGG 0.335446 6_2:-56653189 Msa0920900:CDS
CTGCTATTCATTGCAGACTT+AGG 0.335573 6_2:-56652116 Msa0920900:CDS
TGAGGGAATATGATATGAAT+AGG 0.340079 6_2:-56651914 Msa0920900:CDS
TTCCTTGCTCGTCCTTGAAT+TGG 0.345782 6_2:+56654167 None:intergenic
GAGTAGTAGAATGTTGCTTT+TGG 0.347068 6_2:-56653640 Msa0920900:CDS
AAAGCATGTTTCTTCGTACT+TGG 0.368969 6_2:-56651946 Msa0920900:CDS
TGCAAGTAGAATTTCATTAT+GGG 0.387262 6_2:+56653893 None:intergenic
CGTACTTGGAATGTTATATG+AGG 0.388936 6_2:-56651932 Msa0920900:CDS
GGATGAATCTTGCTCATAGA+TGG 0.390050 6_2:+56653914 None:intergenic
CAACAAAAGACATCTTTGAT+TGG 0.390973 6_2:-56652170 Msa0920900:CDS
CAGATCTGGTGGTGGGGTGG+AGG 0.390999 6_2:-56656515 Msa0920900:five_prime_UTR
GGCGACTCAGGCTGCGGGAG+AGG 0.401312 6_2:-56656425 Msa0920900:CDS
AGATTTCCACCCTAGCGTTT+GGG 0.404466 6_2:-56655125 Msa0920900:intron
TAAAGCAACTTCGTGTAATC+CGG 0.404734 6_2:+56653170 None:intergenic
GTTGCTTTATAAATCACTCT+TGG 0.404999 6_2:-56653156 Msa0920900:CDS
CTCTCCTCACCGTCTGTCTC+AGG 0.417238 6_2:+56656491 None:intergenic
TGCTATTCATTGCAGACTTA+GGG 0.421274 6_2:-56652115 Msa0920900:CDS
TGCATGTACTCCGCTGTTGT+TGG 0.426336 6_2:+56652261 None:intergenic
AACAAAAGACATCTTTGATT+GGG 0.428042 6_2:-56652169 Msa0920900:CDS
GGAGAGGCGACTCAGGCTGC+GGG 0.436820 6_2:-56656430 Msa0920900:CDS
TAGGTGGGATATTAATTGCT+TGG 0.452782 6_2:-56653201 Msa0920900:CDS
TACGACTTCTTACATTGGAA+TGG 0.454510 6_2:-56652202 Msa0920900:CDS
TAATGAAATTCTACTTGCAT+TGG 0.460272 6_2:-56653889 Msa0920900:CDS
ACGACTTCTTACATTGGAAT+GGG 0.460983 6_2:-56652201 Msa0920900:CDS
GATGACACATATGATGCATA+TGG 0.467097 6_2:-56653536 Msa0920900:CDS
GAGCAAGAAATGAAGAAAGA+AGG 0.470516 6_2:-56653116 Msa0920900:CDS
GAGGGAATATGATATGAATA+GGG 0.475500 6_2:-56651913 Msa0920900:CDS
AAAAGAAAATAGACAACGCT+TGG 0.476977 6_2:-56651869 Msa0920900:CDS
AAGGACTCAATGGGTGGCCA+TGG 0.483836 6_2:+56654018 None:intergenic
GTTGCAAGAGAAGGACTCAA+TGG 0.487583 6_2:+56654008 None:intergenic
ATAGTTAGCATTCAACCATC+TGG 0.489896 6_2:+56652287 None:intergenic
CGCTTGGAAAGATATAAATC+AGG 0.490061 6_2:-56651853 Msa0920900:CDS
ATATTGGGGCTCAAAATATA+CGG 0.495144 6_2:+56653610 None:intergenic
TTGAGAACACACGTCAGAAT+AGG 0.502783 6_2:+56651801 None:intergenic
ATATAGGTGGTGGAAGGAGT+TGG 0.505587 6_2:-56653696 Msa0920900:intron
CATGGGCTTTATGTTTCACC+TGG 0.509798 6_2:-56654969 Msa0920900:intron
AGACGTGTTCAACCAATTCA+AGG 0.513816 6_2:-56654179 Msa0920900:CDS
AAGGAGGGGAGAGGCGACTC+AGG 0.519636 6_2:-56656437 Msa0920900:CDS
TAACTTCTTGCCACTAGCCT+AGG 0.521919 6_2:+56653942 None:intergenic
AGGAAATTTCAGTGAAACAT+TGG 0.522145 6_2:-56654149 Msa0920900:CDS
GCCTCACATATGATGGTTCA+TGG 0.522278 6_2:-56654091 Msa0920900:CDS
TAAGAAGTCGTAGCCAACAC+TGG 0.522936 6_2:+56652213 None:intergenic
ATGATGTGCTAACCTTTCAA+TGG 0.523871 6_2:+56653481 None:intergenic
GTGGGATATTAATTGCTTGG+AGG 0.529634 6_2:-56653198 Msa0920900:CDS
TGGCCTCACTCATATAAGCT+TGG 0.531321 6_2:+56652307 None:intergenic
TTCCTTGCTTGAGAATATTG+GGG 0.534381 6_2:+56653596 None:intergenic
TTGCAGATCTGGTGGTGGGG+TGG 0.536415 6_2:-56656518 None:intergenic
TTGCAAGAGAAGGACTCAAT+GGG 0.540415 6_2:+56654009 None:intergenic
AACATTGGTCGTAGATGTTG+AGG 0.541350 6_2:-56654134 Msa0920900:CDS
TTTAGGGTGTTGAGACAACA+TGG 0.541649 6_2:-56654987 Msa0920900:CDS
ATAAATGCTCAAATTTCCAC+AGG 0.543971 6_2:+56651681 None:intergenic
AGCCCCAATATTCTCAAGCA+AGG 0.547455 6_2:-56653598 Msa0920900:CDS
CTTATATGAGTGAGGCCAGA+TGG 0.552296 6_2:-56652302 Msa0920900:CDS
ATCAGATCGCAATAAAAGGA+GGG 0.566525 6_2:-56656452 Msa0920900:CDS
ATAGGTAACGGAACTTCAGT+TGG 0.566914 6_2:+56651819 None:intergenic
GTACTTGGAATGTTATATGA+GGG 0.567173 6_2:-56651931 Msa0920900:CDS
CTTTGTATATAGGTGGTGGA+AGG 0.567617 6_2:-56653702 Msa0920900:intron
GTATGAAGCCTCACATATGA+TGG 0.567934 6_2:-56654098 Msa0920900:CDS
GAAAGTTGCAGATCTGGTGG+TGG 0.568804 6_2:-56656523 None:intergenic
ATCAAGTGGTTACCCAGTGT+TGG 0.570889 6_2:-56652226 Msa0920900:CDS
TTGGCTACGACTTCTTACAT+TGG 0.586299 6_2:-56652207 Msa0920900:CDS
ACTACTCTATCTCGTGCATA+CGG 0.590301 6_2:+56653656 None:intergenic
CACATATCAACAATATCAAG+TGG 0.594145 6_2:-56652240 Msa0920900:CDS
TCGCAATAAAAGGAGGGGAG+AGG 0.605952 6_2:-56656446 Msa0920900:CDS
TGATTTGCTTGTCAATCCTG+TGG 0.608701 6_2:-56651697 Msa0920900:CDS
GATAACTACACACACTCTGA+CGG 0.610210 6_2:-56651741 Msa0920900:CDS
AAGAAGTCGTAGCCAACACT+GGG 0.613680 6_2:+56652214 None:intergenic
AACCAATTCAAGGACGAGCA+AGG 0.615624 6_2:-56654169 Msa0920900:CDS
TCAGATCGCAATAAAAGGAG+GGG 0.620089 6_2:-56656451 Msa0920900:CDS
AATCAGATCGCAATAAAAGG+AGG 0.624449 6_2:-56656453 Msa0920900:CDS
AAAGTTGCAGATCTGGTGGT+GGG 0.626879 6_2:-56656522 None:intergenic
ACATTGGTCGTAGATGTTGA+GGG 0.633793 6_2:-56654133 Msa0920900:CDS
ACCATGAACCATCATATGTG+AGG 0.634158 6_2:+56654090 None:intergenic
AGAGGAAACAACAAGGTGGT+CGG 0.641524 6_2:-56656407 Msa0920900:intron
AATCCAAGCTTATATGAGTG+AGG 0.644710 6_2:-56652310 Msa0920900:CDS
TTAGGGTGTTGAGACAACAT+GGG 0.650604 6_2:-56654986 Msa0920900:CDS
ATAGAAAGTTGCAGATCTGG+TGG 0.657467 6_2:-56656526 None:intergenic
CAAGAGAAGGACTCAATGGG+TGG 0.675293 6_2:+56654012 None:intergenic
GGATGAAGTTGTGTCTAGCG+AGG 0.679610 6_2:-56652094 Msa0920900:intron
GGTGGAGGACCTGAGACAGA+CGG 0.681469 6_2:-56656500 Msa0920900:five_prime_UTR
CTGCGGGAGAGGAAACAACA+AGG 0.688011 6_2:-56656414 Msa0920900:CDS
ACACACGTCAGAATAGGTAA+CGG 0.688917 6_2:+56651807 None:intergenic
AAGTTGCAGATCTGGTGGTG+GGG 0.696007 6_2:-56656521 None:intergenic
TAACTATACACCAACAACAG+CGG 0.710034 6_2:-56652271 Msa0920900:CDS
AGGACCTGAGACAGACGGTG+AGG 0.721224 6_2:-56656495 Msa0920900:five_prime_UTR
CGGGAGAGGAAACAACAAGG+TGG 0.758183 6_2:-56656411 Msa0920900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATATTAATTTTTAAAA+TGG + chr6_2:56656149-56656168 None:intergenic 0.0%
!! TTCATAGTTTATATATTATT+CGG + chr6_2:56652005-56652024 None:intergenic 10.0%
!!! TAGTTTGTTTTTTTATTTTT+TGG - chr6_2:56652498-56652517 Msa0920900:intron 10.0%
!!! CATTTTTTATGTTTTTAATT+TGG - chr6_2:56653322-56653341 Msa0920900:intron 10.0%
!!! AGATAATAATTTTTTTTTTG+TGG + chr6_2:56653728-56653747 None:intergenic 10.0%
!! ATTTATAATTTATTCAACAA+TGG - chr6_2:56655216-56655235 Msa0920900:intron 10.0%
!!! ATTTCATTTTAAATTTTGTA+TGG - chr6_2:56655246-56655265 Msa0920900:intron 10.0%
!!! AAATATTTTTACATCATTTT+AGG - chr6_2:56655347-56655366 Msa0920900:intron 10.0%
!!! TCATAATAATATATTTTTCT+TGG + chr6_2:56655408-56655427 None:intergenic 10.0%
!! ATATTTCTTTATAGTTTAAT+CGG - chr6_2:56655749-56655768 Msa0920900:intron 10.0%
!!! AGTACATATTTTTATGTTAA+TGG + chr6_2:56652433-56652452 None:intergenic 15.0%
!! ATAAAATAGTTAGTCAAAAA+AGG - chr6_2:56652748-56652767 Msa0920900:intron 15.0%
!! TAAAATAGTTAGTCAAAAAA+GGG - chr6_2:56652749-56652768 Msa0920900:intron 15.0%
!! ACTTAAATATTCAAATGAAT+GGG + chr6_2:56653000-56653019 None:intergenic 15.0%
!! TACTTAAATATTCAAATGAA+TGG + chr6_2:56653001-56653020 None:intergenic 15.0%
!!! CTTATTCACATTTTTTTTTA+AGG - chr6_2:56653272-56653291 Msa0920900:intron 15.0%
!! TAATATTTGACTATATTCAT+GGG - chr6_2:56653428-56653447 Msa0920900:intron 15.0%
!! TAATATGAATGTCTAAAAAA+TGG - chr6_2:56653457-56653476 Msa0920900:intron 15.0%
!! GATAATAATTAAAAGAAATG+AGG + chr6_2:56653614-56653633 None:intergenic 15.0%
!!! TAATAATTTTTTTTTTGTGG+TGG + chr6_2:56653725-56653744 None:intergenic 15.0%
!! AATATTAATGTTATACATGT+AGG - chr6_2:56653800-56653819 Msa0920900:intron 15.0%
!! TATAAATAAGAAACTAATAC+AGG + chr6_2:56653944-56653963 None:intergenic 15.0%
!! ATAAATTAATATGTCTCTAA+TGG - chr6_2:56653965-56653984 Msa0920900:CDS 15.0%
!!! TATTTTTTGTCTTTGTATAT+AGG - chr6_2:56654492-56654511 Msa0920900:intron 15.0%
!! GATTAAAGATAAATTTCATA+TGG + chr6_2:56654802-56654821 None:intergenic 15.0%
!! TTATTATGAAGTTATTTGAT+TGG - chr6_2:56655419-56655438 Msa0920900:intron 15.0%
!! CTATCAAAGAATAAAAATTA+AGG - chr6_2:56655620-56655639 Msa0920900:intron 15.0%
!! TCATAAAATTAAGATTACAA+AGG + chr6_2:56655726-56655745 None:intergenic 15.0%
!! TTAACATCATTTAATTACAT+AGG - chr6_2:56655809-56655828 Msa0920900:intron 15.0%
!!! TTTAATTACATAGGTTTTTT+TGG - chr6_2:56655818-56655837 Msa0920900:intron 15.0%
!!! TTTTTACCTGTAATTTCAAA+CGG + chr6_2:56652086-56652105 None:intergenic 20.0%
!! TTGAAATTACAGGTAAAAAT+AGG - chr6_2:56652087-56652106 Msa0920900:intron 20.0%
!! GAAATTATAATGAATACCTA+TGG + chr6_2:56652405-56652424 None:intergenic 20.0%
!!! ATTTTAATTAAGCATGTGTA+TGG - chr6_2:56652619-56652638 Msa0920900:intron 20.0%
!! TATAACATGTGCAATAAATT+CGG - chr6_2:56652723-56652742 Msa0920900:intron 20.0%
!! GTAATATTTGACTATATTCA+TGG - chr6_2:56653427-56653446 Msa0920900:intron 20.0%
!!! AATCCTTTTTTTACTAAAAG+TGG + chr6_2:56653487-56653506 None:intergenic 20.0%
!! GAAAAAGTTTCTTAATAAGA+TGG + chr6_2:56653868-56653887 None:intergenic 20.0%
!! ATGGTTGTTTAATATTATTG+TGG - chr6_2:56653984-56654003 Msa0920900:CDS 20.0%
!!! ATTTTGTTTTAAATTAGGCA+GGG + chr6_2:56654420-56654439 None:intergenic 20.0%
!!! TATTTTGTTTTAAATTAGGC+AGG + chr6_2:56654421-56654440 None:intergenic 20.0%
!! ACAAAGACAAAAAATAGTAT+AGG + chr6_2:56654488-56654507 None:intergenic 20.0%
!!! TGAATTAGAACTTTTTACAA+AGG - chr6_2:56654700-56654719 Msa0920900:intron 20.0%
!!! TTGCAATCAAAATGATTTTT+AGG - chr6_2:56654984-56655003 Msa0920900:CDS 20.0%
!!! AATCAAAATGATTTTTAGGT+GGG - chr6_2:56654988-56655007 Msa0920900:CDS 20.0%
!!! AATTTTGTATGGTTATCAAA+TGG - chr6_2:56655257-56655276 Msa0920900:intron 20.0%
! ATGTTGATGTTTGTAATTGA+TGG - chr6_2:56652025-56652044 Msa0920900:intron 25.0%
!!! TTTTTTTTTACTGGTGTGAA+CGG - chr6_2:56652148-56652167 Msa0920900:CDS 25.0%
! AAAAAACTCCTAATAACACA+TGG + chr6_2:56652237-56652256 None:intergenic 25.0%
! GAAAAAAAATCCAGTTGAAA+GGG - chr6_2:56652302-56652321 Msa0920900:CDS 25.0%
! TCCAAGAAAAATATATCCAT+AGG - chr6_2:56652386-56652405 Msa0920900:intron 25.0%
!! ACCTATGGATATATTTTTCT+TGG + chr6_2:56652390-56652409 None:intergenic 25.0%
! GGTATTCATTATAATTTCCA+AGG - chr6_2:56652407-56652426 Msa0920900:intron 25.0%
!!! TATTTTTATGTTAATGGCCT+TGG + chr6_2:56652427-56652446 None:intergenic 25.0%
! ACATGCTTAATTAAAATTGC+TGG + chr6_2:56652616-56652635 None:intergenic 25.0%
! GTCTAGATCAATATTTATAG+TGG + chr6_2:56652919-56652938 None:intergenic 25.0%
!! AGAAGAAATTAGTCAAGTTT+TGG - chr6_2:56653120-56653139 Msa0920900:CDS 25.0%
! TACAAGAGTTATGTTCAAAA+TGG - chr6_2:56653151-56653170 Msa0920900:CDS 25.0%
!! TAAGTTGAGATATATATACC+AGG + chr6_2:56653256-56653275 None:intergenic 25.0%
!!! AGACCACTTTTAGTAAAAAA+AGG - chr6_2:56653481-56653500 Msa0920900:intron 25.0%
! TAAGTTTAACTCAATTGGTT+TGG - chr6_2:56653648-56653667 Msa0920900:CDS 25.0%
! CATAAATCATAAAATATGCG+CGG - chr6_2:56653677-56653696 Msa0920900:CDS 25.0%
! TGCAAGTAGAATTTCATTAT+GGG + chr6_2:56654314-56654333 None:intergenic 25.0%
! ATGCAAGTAGAATTTCATTA+TGG + chr6_2:56654315-56654334 None:intergenic 25.0%
! TAATGAAATTCTACTTGCAT+TGG - chr6_2:56654315-56654334 Msa0920900:intron 25.0%
!! TTCCAAATTCTTTTTGATGT+AGG + chr6_2:56654369-56654388 None:intergenic 25.0%
!! TTTTTGTCTTTGTATATAGG+TGG - chr6_2:56654495-56654514 Msa0920900:intron 25.0%
! GTCATCAATGTATGATAAAA+TGG + chr6_2:56654654-56654673 None:intergenic 25.0%
!!! ATGGTTTTAACTCTAAAGTT+TGG + chr6_2:56654783-56654802 None:intergenic 25.0%
!!! CAATCAAAATGATTTTTAGG+TGG - chr6_2:56654987-56655006 Msa0920900:CDS 25.0%
!!! ACTCTTACTTCTTTTAAGAA+GGG + chr6_2:56655133-56655152 None:intergenic 25.0%
!!! AACTCTTACTTCTTTTAAGA+AGG + chr6_2:56655134-56655153 None:intergenic 25.0%
! TATCCATTGTTATATGAACT+TGG - chr6_2:56655500-56655519 Msa0920900:intron 25.0%
! AAGAAAAATGTTTCATCATG+AGG - chr6_2:56655562-56655581 Msa0920900:intron 25.0%
! AGGTAAAAACTTATTATCCA+TGG - chr6_2:56655640-56655659 Msa0920900:intron 25.0%
! TTTCTTTATAGTTTAATCGG+TGG - chr6_2:56655752-56655771 Msa0920900:intron 25.0%
! AACAAAAGACATCTTTGATT+GGG - chr6_2:56656035-56656054 Msa0920900:intron 25.0%
!! TTTTATTGCGATCTGATTTG+TGG + chr6_2:56651749-56651768 None:intergenic 30.0%
ACAAATCAGATCGCAATAAA+AGG - chr6_2:56651748-56651767 Msa0920900:CDS 30.0%
GTTGCATAATGTGGAAAATT+TGG - chr6_2:56651925-56651944 Msa0920900:CDS 30.0%
!! ATTGATGGATGTTGTTGTTT+CGG - chr6_2:56652040-56652059 Msa0920900:intron 30.0%
!!! TGCACTGGTTTTTTTTTTAC+TGG - chr6_2:56652139-56652158 Msa0920900:CDS 30.0%
! CGAAATTTCCATGTGTTATT+AGG - chr6_2:56652226-56652245 Msa0920900:CDS 30.0%
GGAAAAAAAATCCAGTTGAA+AGG - chr6_2:56652301-56652320 Msa0920900:CDS 30.0%
! ATGTATATTGATAGCACATG+TGG - chr6_2:56652469-56652488 Msa0920900:intron 30.0%
TGGGATGCTTAATTAATCAA+TGG + chr6_2:56652981-56653000 None:intergenic 30.0%
CTTCAATCCTAATGAGAAAT+CGG - chr6_2:56653037-56653056 Msa0920900:intron 30.0%
!! ATGAGTGTCTTTTGTTTGAT+CGG - chr6_2:56653556-56653575 Msa0920900:CDS 30.0%
ATCGGATACATATTAGACAT+CGG - chr6_2:56653574-56653593 Msa0920900:CDS 30.0%
TAATAAGATGGCTACCATAT+GGG + chr6_2:56653856-56653875 None:intergenic 30.0%
TTAATAAGATGGCTACCATA+TGG + chr6_2:56653857-56653876 None:intergenic 30.0%
AGGAAATTTCAGTGAAACAT+TGG - chr6_2:56654055-56654074 Msa0920900:CDS 30.0%
! GGTTCATGGTGAAAATATTT+TGG - chr6_2:56654127-56654146 Msa0920900:CDS 30.0%
!! TGGTGAAAATATTTTGGAAG+AGG - chr6_2:56654133-56654152 Msa0920900:CDS 30.0%
!! AAATATTTTGGAAGAGGCTT+TGG - chr6_2:56654139-56654158 Msa0920900:CDS 30.0%
!! TTTACTTTTGTTGCAAGAGA+AGG + chr6_2:56654208-56654227 None:intergenic 30.0%
! ATTCTTTTTGATGTAGGCTT+TGG + chr6_2:56654363-56654382 None:intergenic 30.0%
AGCCTACATCAAAAAGAATT+TGG - chr6_2:56654364-56654383 Msa0920900:intron 30.0%
!!! AGTAGTAGAATGTTGCTTTT+GGG - chr6_2:56654565-56654584 Msa0920900:intron 30.0%
ATATTGGGGCTCAAAATATA+CGG + chr6_2:56654597-56654616 None:intergenic 30.0%
TTTCCTTGCTTGAGAATATT+GGG + chr6_2:56654612-56654631 None:intergenic 30.0%
! TTTTCCTTGCTTGAGAATAT+TGG + chr6_2:56654613-56654632 None:intergenic 30.0%
! TTTTTACAAAGGCCATTGAA+AGG - chr6_2:56654711-56654730 Msa0920900:intron 30.0%
CTAGTCATCAAGTTTAGATT+TGG - chr6_2:56654821-56654840 Msa0920900:intron 30.0%
AATTTATCCATCTCCAATCT+TGG - chr6_2:56654865-56654884 Msa0920900:intron 30.0%
ATTGAATTAGCAACCAAGAT+TGG + chr6_2:56654881-56654900 None:intergenic 30.0%
! GTTGCTTTATAAATCACTCT+TGG - chr6_2:56655048-56655067 Msa0920900:CDS 30.0%
!! CTCTTACTTCTTTTAAGAAG+GGG + chr6_2:56655132-56655151 None:intergenic 30.0%
! TTTTCTTGGTCAAGTTATCT+AGG + chr6_2:56655394-56655413 None:intergenic 30.0%
GAACCAAGTTCATATAACAA+TGG + chr6_2:56655506-56655525 None:intergenic 30.0%
CACATATCAACAATATCAAG+TGG - chr6_2:56655964-56655983 Msa0920900:intron 30.0%
CAACAAAAGACATCTTTGAT+TGG - chr6_2:56656034-56656053 Msa0920900:intron 30.0%
GTACTTGGAATGTTATATGA+GGG - chr6_2:56656273-56656292 Msa0920900:intron 30.0%
TGAGGGAATATGATATGAAT+AGG - chr6_2:56656290-56656309 Msa0920900:intron 30.0%
GAGGGAATATGATATGAATA+GGG - chr6_2:56656291-56656310 Msa0920900:intron 30.0%
!! AAGCGTTGTCTATTTTCTTT+TGG + chr6_2:56656336-56656355 None:intergenic 30.0%
AAAAGAAAATAGACAACGCT+TGG - chr6_2:56656335-56656354 Msa0920900:intron 30.0%
AATCAGATCGCAATAAAAGG+AGG - chr6_2:56651751-56651770 Msa0920900:CDS 35.0%
ATCAGATCGCAATAAAAGGA+GGG - chr6_2:56651752-56651771 Msa0920900:CDS 35.0%
GTGTAATGTGTTGCATAATG+TGG - chr6_2:56651916-56651935 Msa0920900:CDS 35.0%
! TGTTTCGGTTTGATTTCATG+AGG - chr6_2:56652055-56652074 Msa0920900:intron 35.0%
! GAATTGCCGTTTGAAATTAC+AGG - chr6_2:56652077-56652096 Msa0920900:intron 35.0%
CAGGTAAAAATAGGCCAAAA+TGG - chr6_2:56652096-56652115 Msa0920900:CDS 35.0%
TAAAAATAGGCCAAAATGGC+TGG - chr6_2:56652100-56652119 Msa0920900:CDS 35.0%
ATAAGTCTAACTGACACTGT+TGG + chr6_2:56652667-56652686 None:intergenic 35.0%
!! TTCAACTCTATGGTTTGGTT+GGG + chr6_2:56652952-56652971 None:intergenic 35.0%
TCTTCTTCAACTCTATGGTT+TGG + chr6_2:56652957-56652976 None:intergenic 35.0%
! TGCAAAACCGATTTCTCATT+AGG + chr6_2:56653047-56653066 None:intergenic 35.0%
!! ATTCTCTTGCTGTGCTATTT+AGG - chr6_2:56653200-56653219 Msa0920900:CDS 35.0%
!! TTCTCTTGCTGTGCTATTTA+GGG - chr6_2:56653201-56653220 Msa0920900:CDS 35.0%
CCAATTGAGTTAAACTTACG+AGG + chr6_2:56653646-56653665 None:intergenic 35.0%
CCTCGTAAGTTTAACTCAAT+TGG - chr6_2:56653643-56653662 Msa0920900:CDS 35.0%
!!! ATTTTTTTTTTGTGGTGGCC+AGG + chr6_2:56653720-56653739 None:intergenic 35.0%
CTTAGATCAGTTTACCCATA+TGG - chr6_2:56653839-56653858 Msa0920900:CDS 35.0%
! TCTACTTGCATTGGCAAAAT+TGG - chr6_2:56654324-56654343 Msa0920900:intron 35.0%
TTGTCTTTGTATATAGGTGG+TGG - chr6_2:56654498-56654517 Msa0920900:intron 35.0%
!!! GAGTAGTAGAATGTTGCTTT+TGG - chr6_2:56654564-56654583 Msa0920900:intron 35.0%
TTCCTTGCTTGAGAATATTG+GGG + chr6_2:56654611-56654630 None:intergenic 35.0%
GATGACACATATGATGCATA+TGG - chr6_2:56654668-56654687 Msa0920900:intron 35.0%
ATGATGTGCTAACCTTTCAA+TGG + chr6_2:56654726-56654745 None:intergenic 35.0%
TAGGTGGGATATTAATTGCT+TGG - chr6_2:56655003-56655022 Msa0920900:CDS 35.0%
TAAAGCAACTTCGTGTAATC+CGG + chr6_2:56655037-56655056 None:intergenic 35.0%
GAGCAAGAAATGAAGAAAGA+AGG - chr6_2:56655088-56655107 Msa0920900:CDS 35.0%
!! TTCTTTTAAGAAGGGGTCAA+GGG + chr6_2:56655125-56655144 None:intergenic 35.0%
TGGTTATCAAATGGACGTTT+AGG - chr6_2:56655266-56655285 Msa0920900:intron 35.0%
ATCCATGGTTATATGAACTC+AGG - chr6_2:56655655-56655674 Msa0920900:intron 35.0%
AATCCAAGCTTATATGAGTG+AGG - chr6_2:56655894-56655913 Msa0920900:intron 35.0%
ATAGTTAGCATTCAACCATC+TGG + chr6_2:56655920-56655939 None:intergenic 35.0%
TAACTATACACCAACAACAG+CGG - chr6_2:56655933-56655952 Msa0920900:intron 35.0%
TACGACTTCTTACATTGGAA+TGG - chr6_2:56656002-56656021 Msa0920900:intron 35.0%
ACGACTTCTTACATTGGAAT+GGG - chr6_2:56656003-56656022 Msa0920900:intron 35.0%
! GCAGCAGCATTAACAATTTT+TGG + chr6_2:56656072-56656091 None:intergenic 35.0%
TGCTATTCATTGCAGACTTA+GGG - chr6_2:56656089-56656108 Msa0920900:intron 35.0%
AAAGCATGTTTCTTCGTACT+TGG - chr6_2:56656258-56656277 Msa0920900:intron 35.0%
CGTACTTGGAATGTTATATG+AGG - chr6_2:56656272-56656291 Msa0920900:intron 35.0%
CGCTTGGAAAGATATAAATC+AGG - chr6_2:56656351-56656370 Msa0920900:intron 35.0%
TCAGATCGCAATAAAAGGAG+GGG - chr6_2:56651753-56651772 Msa0920900:CDS 40.0%
! ACTGTGATTTCCAGCCATTT+TGG + chr6_2:56652113-56652132 None:intergenic 40.0%
AATTTCGAAAAAGCTCCCAG+CGG + chr6_2:56652213-56652232 None:intergenic 40.0%
TCCTCGTTCATACATACTGA+AGG - chr6_2:56652280-56652299 Msa0920900:CDS 40.0%
TCCTTCAGTATGTATGAACG+AGG + chr6_2:56652284-56652303 None:intergenic 40.0%
!! TCAACTCTATGGTTTGGTTG+GGG + chr6_2:56652951-56652970 None:intergenic 40.0%
!! CTTCAACTCTATGGTTTGGT+TGG + chr6_2:56652953-56652972 None:intergenic 40.0%
ATGGCTCTTCTTCAACTCTA+TGG + chr6_2:56652962-56652981 None:intergenic 40.0%
!! TTTAGGGTGTTGAGACAACA+TGG - chr6_2:56653217-56653236 Msa0920900:intron 40.0%
!! TTAGGGTGTTGAGACAACAT+GGG - chr6_2:56653218-56653237 Msa0920900:intron 40.0%
AGACGTGTTCAACCAATTCA+AGG - chr6_2:56654025-56654044 Msa0920900:intron 40.0%
AACATTGGTCGTAGATGTTG+AGG - chr6_2:56654070-56654089 Msa0920900:CDS 40.0%
ACATTGGTCGTAGATGTTGA+GGG - chr6_2:56654071-56654090 Msa0920900:CDS 40.0%
GTATGAAGCCTCACATATGA+TGG - chr6_2:56654106-56654125 Msa0920900:CDS 40.0%
ACCATGAACCATCATATGTG+AGG + chr6_2:56654117-56654136 None:intergenic 40.0%
TTGCAAGAGAAGGACTCAAT+GGG + chr6_2:56654198-56654217 None:intergenic 40.0%
GGATGAATCTTGCTCATAGA+TGG + chr6_2:56654293-56654312 None:intergenic 40.0%
!! CTTTGTATATAGGTGGTGGA+AGG - chr6_2:56654502-56654521 Msa0920900:intron 40.0%
ACTACTCTATCTCGTGCATA+CGG + chr6_2:56654551-56654570 None:intergenic 40.0%
TTAGCAACCAAGATTGGAGA+TGG + chr6_2:56654875-56654894 None:intergenic 40.0%
GTGGGATATTAATTGCTTGG+AGG - chr6_2:56655006-56655025 Msa0920900:CDS 40.0%
TAATTGCTTGGAGGATCTTC+CGG - chr6_2:56655015-56655034 Msa0920900:CDS 40.0%
!! CTTCTTTTAAGAAGGGGTCA+AGG + chr6_2:56655126-56655145 None:intergenic 40.0%
GACCTGAGTTCATATAACCA+TGG + chr6_2:56655660-56655679 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG - chr6_2:56655997-56656016 Msa0920900:intron 40.0%
CTGCTATTCATTGCAGACTT+AGG - chr6_2:56656088-56656107 Msa0920900:intron 40.0%
!! ATAGGTAACGGAACTTCAGT+TGG + chr6_2:56656388-56656407 None:intergenic 40.0%
ACACACGTCAGAATAGGTAA+CGG + chr6_2:56656400-56656419 None:intergenic 40.0%
TTGAGAACACACGTCAGAAT+AGG + chr6_2:56656406-56656425 None:intergenic 40.0%
!! CAATCTCTCGCGTTTTATTG+AGG - chr6_2:56656423-56656442 Msa0920900:CDS 40.0%
GATAACTACACACACTCTGA+CGG - chr6_2:56656463-56656482 Msa0920900:CDS 40.0%
!! TGATTTGCTTGTCAATCCTG+TGG - chr6_2:56656507-56656526 Msa0920900:five_prime_UTR 40.0%
AGAGGAAACAACAAGGTGGT+CGG - chr6_2:56651797-56651816 Msa0920900:CDS 45.0%
CAGAGCAAAGAGAAGGAAGA+GGG - chr6_2:56651860-56651879 Msa0920900:CDS 45.0%
! TTAACTGCCGCTTAGGTAAC+CGG + chr6_2:56652187-56652206 None:intergenic 45.0%
GTGGAAACTTCCCTTTCAAC+TGG + chr6_2:56652315-56652334 None:intergenic 45.0%
GAAACCTGTGGAACACACAA+AGG + chr6_2:56652337-56652356 None:intergenic 45.0%
AATATCCGTCGAGAAACCTG+TGG + chr6_2:56652349-56652368 None:intergenic 45.0%
! ATATTGAGAGCACATCGCTG+TGG - chr6_2:56652556-56652575 Msa0920900:intron 45.0%
AGTCTAACTGACACTGTTGG+TGG + chr6_2:56652664-56652683 None:intergenic 45.0%
AGATTTCCACCCTAGCGTTT+GGG - chr6_2:56653079-56653098 Msa0920900:intron 45.0%
! CATGGGCTTTATGTTTCACC+TGG - chr6_2:56653235-56653254 Msa0920900:intron 45.0%
TCATAAAATATGCGCGGTCC+AGG - chr6_2:56653683-56653702 Msa0920900:CDS 45.0%
CATAAAATATGCGCGGTCCA+GGG - chr6_2:56653684-56653703 Msa0920900:CDS 45.0%
!!! TTTTTTTGTGGTGGCCAGGA+GGG + chr6_2:56653716-56653735 None:intergenic 45.0%
!!! TTTTTTTTGTGGTGGCCAGG+AGG + chr6_2:56653717-56653736 None:intergenic 45.0%
AACCAATTCAAGGACGAGCA+AGG - chr6_2:56654035-56654054 Msa0920900:intron 45.0%
TTCCTTGCTCGTCCTTGAAT+TGG + chr6_2:56654040-56654059 None:intergenic 45.0%
GCCTCACATATGATGGTTCA+TGG - chr6_2:56654113-56654132 Msa0920900:CDS 45.0%
!!! GAGGCTTTGGCTTTTACTTC+TGG - chr6_2:56654152-56654171 Msa0920900:CDS 45.0%
GTTGCAAGAGAAGGACTCAA+TGG + chr6_2:56654199-56654218 None:intergenic 45.0%
CAAAAACTTGCCTAGGCTAG+TGG - chr6_2:56654252-56654271 Msa0920900:intron 45.0%
! TAACTTCTTGCCACTAGCCT+AGG + chr6_2:56654265-56654284 None:intergenic 45.0%
!! GTTTTAAATTAGGCAGGGCG+TGG + chr6_2:56654415-56654434 None:intergenic 45.0%
!! ATATAGGTGGTGGAAGGAGT+TGG - chr6_2:56654508-56654527 Msa0920900:intron 45.0%
AGCCCCAATATTCTCAAGCA+AGG - chr6_2:56654606-56654625 Msa0920900:intron 45.0%
TGGCCTCACTCATATAAGCT+TGG + chr6_2:56655900-56655919 None:intergenic 45.0%
CTTATATGAGTGAGGCCAGA+TGG - chr6_2:56655902-56655921 Msa0920900:intron 45.0%
ATCAAGTGGTTACCCAGTGT+TGG - chr6_2:56655978-56655997 Msa0920900:intron 45.0%
AAGAAGTCGTAGCCAACACT+GGG + chr6_2:56655993-56656012 None:intergenic 45.0%
TAAGAAGTCGTAGCCAACAC+TGG + chr6_2:56655994-56656013 None:intergenic 45.0%
!!! TTTATATTTTGTTTTAAATT+AGG + chr6_2:56654425-56654444 None:intergenic 5.0%
TCGCAATAAAAGGAGGGGAG+AGG - chr6_2:56651758-56651777 Msa0920900:CDS 50.0%
! CCTCTTTTCTCTCTCGTCAC+TGG + chr6_2:56651831-56651850 None:intergenic 50.0%
CCAGTGACGAGAGAGAAAAG+AGG - chr6_2:56651828-56651847 Msa0920900:CDS 50.0%
AAACGCGCAGAGCAAAGAGA+AGG - chr6_2:56651853-56651872 Msa0920900:CDS 50.0%
GCAGAGCAAAGAGAAGGAAG+AGG - chr6_2:56651859-56651878 Msa0920900:CDS 50.0%
AATCACAGTGCAGACTGCAC+TGG - chr6_2:56652124-56652143 Msa0920900:CDS 50.0%
GAACGGTAGTTAACTGCTGC+CGG - chr6_2:56652165-56652184 Msa0920900:CDS 50.0%
TCCACCTTTGTGTGTTCCAC+AGG - chr6_2:56652330-56652349 Msa0920900:intron 50.0%
ACCTGTGGAACACACAAAGG+TGG + chr6_2:56652334-56652353 None:intergenic 50.0%
GTGTTCCACAGGTTTCTCGA+CGG - chr6_2:56652341-56652360 Msa0920900:intron 50.0%
! GGTTTGGTTGGGGAAAGAAG+AGG + chr6_2:56652941-56652960 None:intergenic 50.0%
CAGATTTCCACCCTAGCGTT+TGG - chr6_2:56653078-56653097 Msa0920900:intron 50.0%
TAGCTCACACCCAAACGCTA+GGG + chr6_2:56653091-56653110 None:intergenic 50.0%
ATAGCTCACACCCAAACGCT+AGG + chr6_2:56653092-56653111 None:intergenic 50.0%
TTCTGGTCACCTTCAGTCCA+TGG - chr6_2:56654169-56654188 Msa0920900:CDS 50.0%
CAAGAGAAGGACTCAATGGG+TGG + chr6_2:56654195-56654214 None:intergenic 50.0%
CTCTGCGCAAAAACTTGCCT+AGG - chr6_2:56654245-56654264 Msa0920900:intron 50.0%
TGCATGTACTCCGCTGTTGT+TGG + chr6_2:56655946-56655965 None:intergenic 50.0%
GGATGAAGTTGTGTCTAGCG+AGG - chr6_2:56656110-56656129 Msa0920900:intron 50.0%
CTGCGGGAGAGGAAACAACA+AGG - chr6_2:56651790-56651809 Msa0920900:CDS 55.0%
CGGGAGAGGAAACAACAAGG+TGG - chr6_2:56651793-56651812 Msa0920900:CDS 55.0%
! ACTGCTGCCGGTTACCTAAG+CGG - chr6_2:56652177-56652196 Msa0920900:CDS 55.0%
! GCGGTAGTTAACTGCCGCTT+AGG + chr6_2:56652194-56652213 None:intergenic 55.0%
AAGCGGCAGTTAACTACCGC+TGG - chr6_2:56652194-56652213 Msa0920900:CDS 55.0%
AGCGGCAGTTAACTACCGCT+GGG - chr6_2:56652195-56652214 Msa0920900:CDS 55.0%
! AATGGGTGGCCATGGACTGA+AGG + chr6_2:56654181-56654200 None:intergenic 55.0%
AAGGACTCAATGGGTGGCCA+TGG + chr6_2:56654189-56654208 None:intergenic 55.0%
GGTGGAGGACCTGAGACAGA+CGG - chr6_2:56651704-56651723 Msa0920900:CDS 60.0%
AGGACCTGAGACAGACGGTG+AGG - chr6_2:56651709-56651728 Msa0920900:CDS 60.0%
CTCTCCTCACCGTCTGTCTC+AGG + chr6_2:56651716-56651735 None:intergenic 60.0%
! TGAGAGCACATCGCTGTGGC+TGG - chr6_2:56652560-56652579 Msa0920900:intron 60.0%
! GAGAGCACATCGCTGTGGCT+GGG - chr6_2:56652561-56652580 Msa0920900:intron 60.0%
CTCACACCCAAACGCTAGGG+TGG + chr6_2:56653088-56653107 None:intergenic 60.0%
GTCCAGGGTTCAAACCCTCC+TGG - chr6_2:56653699-56653718 Msa0920900:intron 60.0%
AAGGAGGGGAGAGGCGACTC+AGG - chr6_2:56651767-56651786 Msa0920900:CDS 65.0%
GGCCAGGAGGGTTTGAACCC+TGG + chr6_2:56653704-56653723 None:intergenic 65.0%
GGGAGAGGCGACTCAGGCTG+CGG - chr6_2:56651773-56651792 Msa0920900:CDS 70.0%
GGAGAGGCGACTCAGGCTGC+GGG - chr6_2:56651774-56651793 Msa0920900:CDS 70.0%
GGCGACTCAGGCTGCGGGAG+AGG - chr6_2:56651779-56651798 Msa0920900:CDS 75.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 56651692 56656534 56651692 ID=Msa0920900;Name=Msa0920900
chr6_2 mRNA 56651692 56656534 56651692 ID=Msa0920900-mRNA-1;Parent=Msa0920900;Name=Msa0920900-mRNA-1;_AED=0.13;_eAED=0.13;_QI=46|0|0|0.77|0.5|0.66|9|0|504
chr6_2 exon 56656408 56656534 56656408 ID=Msa0920900-mRNA-1:exon:8511;Parent=Msa0920900-mRNA-1
chr6_2 exon 56655693 56655701 56655693 ID=Msa0920900-mRNA-1:exon:8510;Parent=Msa0920900-mRNA-1
chr6_2 exon 56654970 56655132 56654970 ID=Msa0920900-mRNA-1:exon:8509;Parent=Msa0920900-mRNA-1
chr6_2 exon 56654053 56654199 56654053 ID=Msa0920900-mRNA-1:exon:8508;Parent=Msa0920900-mRNA-1
chr6_2 exon 56653828 56654041 56653828 ID=Msa0920900-mRNA-1:exon:8507;Parent=Msa0920900-mRNA-1
chr6_2 exon 56653494 56653712 56653494 ID=Msa0920900-mRNA-1:exon:8506;Parent=Msa0920900-mRNA-1
chr6_2 exon 56653082 56653220 56653082 ID=Msa0920900-mRNA-1:exon:8505;Parent=Msa0920900-mRNA-1
chr6_2 exon 56652095 56652343 56652095 ID=Msa0920900-mRNA-1:exon:8504;Parent=Msa0920900-mRNA-1
chr6_2 exon 56651692 56651982 56651692 ID=Msa0920900-mRNA-1:exon:8503;Parent=Msa0920900-mRNA-1
chr6_2 five_prime_UTR 56656489 56656534 56656489 ID=Msa0920900-mRNA-1:five_prime_utr;Parent=Msa0920900-mRNA-1
chr6_2 CDS 56656408 56656488 56656408 ID=Msa0920900-mRNA-1:cds;Parent=Msa0920900-mRNA-1
chr6_2 CDS 56655693 56655701 56655693 ID=Msa0920900-mRNA-1:cds;Parent=Msa0920900-mRNA-1
chr6_2 CDS 56654970 56655132 56654970 ID=Msa0920900-mRNA-1:cds;Parent=Msa0920900-mRNA-1
chr6_2 CDS 56654053 56654199 56654053 ID=Msa0920900-mRNA-1:cds;Parent=Msa0920900-mRNA-1
chr6_2 CDS 56653828 56654041 56653828 ID=Msa0920900-mRNA-1:cds;Parent=Msa0920900-mRNA-1
chr6_2 CDS 56653494 56653712 56653494 ID=Msa0920900-mRNA-1:cds;Parent=Msa0920900-mRNA-1
chr6_2 CDS 56653082 56653220 56653082 ID=Msa0920900-mRNA-1:cds;Parent=Msa0920900-mRNA-1
chr6_2 CDS 56652095 56652343 56652095 ID=Msa0920900-mRNA-1:cds;Parent=Msa0920900-mRNA-1
chr6_2 CDS 56651692 56651982 56651692 ID=Msa0920900-mRNA-1:cds;Parent=Msa0920900-mRNA-1
Gene Sequence

>Msa0920900

ATGACAGACCACAAATCAGATCGCAATAAAAGGAGGGGAGAGGCGACTCAGGCTGCGGGAGAGGAAACAACAAGGTGGTCGATACTACTACGTTTGGGTGTGAGCTATCACTTTGAAGAAGAAATTAGTCAAGTTTTGGAACATATTTACAAGAGTTATGTTCAAAATGGAGAAATAACTCTCAAAGACAATCTTCATTCTCTTGCTGTGCTATTTAGGGTGTTGAGACAACATGGGCTTTATGTTTCACCTGACGTGTTCAACCAATTCAAGGACGAGCAAGGAAATTTCAGTGAAACATTGGTCGTAGATGTTGAGGGCATGTTAAACTTGTATGAAGCCTCACATATGATGGTTCATGGTGAAAATATTTTGGAAGAGGCTTTGGCTTTTACTTCTGTCCATGGCCACCCATTGAGTCCTTCTCTTGCAACAAAAGTAAAACAAAGCTTAAGACAATCTCTGCGCAAAAACTTGCCTAGGCTAGTGGCAAGAAGTTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTACTTGCATTGGCAAAATTGGATTTTAATATGCTCCAAAGCCTACATCAAAAAGAATTTGGAAATATTAGCAAGTGGTGGAAGGAGTTGGATATTGCACAAAAACTACCGTATGCACGAGATAGAGTAGTAGAATGTTGCTTTTGGGTTATGACCGTATATTTTGAGCCCCAATATTCTCAAGCAAGGAAAATGATGTCAAAATTTATCTCCATTTTATCATACATTGATGACACATATGATGCATATGGAACTATTGATGAATTAGAACTTTTTACAAAGGCCATTGAAAGGTGGGATATTAATTGCTTGGAGGATCTTCCGGATTACACGAAGTTGCTTTATAAATCACTCTTGGATGTTTATGAAGAAATAGAGCAAGAAATGAAGAAAGAAGGAAGAGAATACACCCTTGACCCCTTCTTAAAAGAATTCAAAAATATAATCCAAGCTTATATGAGTGAGGCCAGATGGTTGAATGCTAACTATACACCAACAACAGCGGAGTACATGCACATATCAACAATATCAAGTGGTTACCCAGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCAACAAAAGACATCTTTGATTGGGTAACTAACAATCCAAAAATTGTTAATGCTGCTGCTATTCATTGCAGACTTAGGGATGAAGTTGTGTCTAGCGAGTTTGAGCAGAAAAGAAAGCATGTTTCTTCGTACTTGGAATGTTATATGAGGGAATATGATATGAATAGGGAAGCTGCTATTCAAGAATGCCAAAAGAAAATAGACAACGCTTGGAAAGATATAAATCAGGAATGTCTAAAACCAACTGAAGTTCCGTTACCTATTCTGACGTGTGTTCTCAATCTCTCGCGTTTTATTGAGGTTTTTTACAAAGATACAGATAACTACACACACTCTGACGGACTAATGAAGACATATATTAATGATTTGCTTGTCAATCCTGTGGAAATT
Protein sequence

>Msa0920900

MTDHKSDRNKRRGEATQAAGEETTRWSILLRLGVSYHFEEEISQVLEHIYKSYVQNGEITLKDNLHSLAVLFRVLRQHGLYVSPDVFNQFKDEQGNFSETLVVDVEGMLNLYEASHMMVHGENILEEALAFTSVHGHPLSPSLATKVKQSLRQSLRKNLPRLVARSYISIYEQDSSHNEILLALAKLDFNMLQSLHQKEFGNISKWWKELDIAQKLPYARDRVVECCFWVMTVYFEPQYSQARKMMSKFISILSYIDDTYDAYGTIDELELFTKAIERWDINCLEDLPDYTKLLYKSLLDVYEEIEQEMKKEGREYTLDPFLKEFKNIIQAYMSEARWLNANYTPTTAEYMHISTISSGYPVLATTSYIGMGNIATKDIFDWVTNNPKIVNAAAIHCRLRDEVVSSEFEQKRKHVSSYLECYMREYDMNREAAIQECQKKIDNAWKDINQECLKPTEVPLPILTCVLNLSRFIEVFYKDTDNYTHSDGLMKTYINDLLVNPVEI