AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0894140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0894140 MtrunA17_Chr7g0236991 69.424 556 167 1 1 556 1 553 0.0 820
Msa0894140 MtrunA17_Chr7g0237001 69.245 556 168 1 1 556 1 553 0.0 818
Msa0894140 MtrunA17_Chr7g0237041 69.245 556 168 1 1 556 1 553 0.0 818
Msa0894140 MtrunA17_Chr7g0237081 69.245 556 168 1 1 556 1 553 0.0 818
Msa0894140 MtrunA17_Chr7g0237051 69.245 556 168 1 1 556 1 553 0.0 818
Msa0894140 MtrunA17_Chr6g0466051 69.245 556 168 1 1 556 1 553 0.0 812
Msa0894140 MtrunA17_Chr6g0465911 69.065 556 169 1 1 556 1 553 0.0 810
Msa0894140 MtrunA17_Chr5g0425371 69.065 556 169 1 1 556 1 553 0.0 808
Msa0894140 MtrunA17_Chr6g0465441 67.446 556 178 1 1 556 1 553 0.0 793
Msa0894140 MtrunA17_Chr6g0451711 66.607 557 185 1 1 556 1 557 0.0 786
Msa0894140 MtrunA17_Chr3g0105071 66.607 557 185 1 1 556 1 557 0.0 781
Msa0894140 MtrunA17_Chr4g0024691 66.545 550 184 0 7 556 12 561 0.0 772
Msa0894140 MtrunA17_Chr3g0082691 66.484 546 182 1 12 556 8 553 0.0 770
Msa0894140 MtrunA17_Chr6g0465851 69.884 518 156 0 39 556 1 518 0.0 764
Msa0894140 MtrunA17_Chr5g0431571 67.279 544 177 1 12 554 4 547 0.0 755
Msa0894140 MtrunA17_Chr5g0431651 65.934 546 184 2 13 556 7 552 0.0 752
Msa0894140 MtrunA17_Chr7g0236961 70.080 498 149 0 59 556 1 498 0.0 747
Msa0894140 MtrunA17_Chr7g0237011 70.080 498 149 0 59 556 1 498 0.0 746
Msa0894140 MtrunA17_Chr4g0042111 57.630 557 233 2 2 556 7 562 0.0 670
Msa0894140 MtrunA17_Chr7g0236971 68.828 401 125 0 156 556 1 401 0.0 595
Msa0894140 MtrunA17_Chr6g0465981 71.809 376 103 1 1 376 1 373 0.0 565
Msa0894140 MtrunA17_Chr6g0465871 71.809 376 103 1 1 376 1 373 0.0 565
Msa0894140 MtrunA17_Chr6g0466081 71.809 376 103 1 1 376 1 373 0.0 565
Msa0894140 MtrunA17_Chr6g0466111 73.373 338 90 0 39 376 1 338 0.0 518
Msa0894140 MtrunA17_Chr6g0465931 73.077 338 91 0 39 376 1 338 0.0 514
Msa0894140 MtrunA17_Chr2g0319041 45.073 548 293 8 15 556 12 557 1.37e-171 497
Msa0894140 MtrunA17_Chr7g0236951 72.524 313 86 0 59 371 1 313 6.02e-171 486
Msa0894140 MtrunA17_Chr7g0237031 72.524 313 86 0 59 371 1 313 2.68e-170 484
Msa0894140 MtrunA17_Chr8g0336181 44.727 550 296 6 13 556 9 556 4.53e-169 491
Msa0894140 MtrunA17_Chr2g0319051 43.665 513 283 6 48 556 4 514 1.13e-158 462
Msa0894140 MtrunA17_Chr4g0008621 44.750 400 217 4 15 410 19 418 6.56e-120 361
Msa0894140 MtrunA17_Chr6g0466031 64.231 260 93 0 297 556 1 260 5.59e-119 352
Msa0894140 MtrunA17_Chr5g0445511 65.690 239 82 0 151 389 1 239 2.28e-113 337
Msa0894140 MtrunA17_Chr4g0023911 34.615 546 346 4 13 554 41 579 9.05e-113 347
Msa0894140 MtrunA17_Chr2g0319071 36.364 506 272 10 53 554 28 487 2.17e-111 340
Msa0894140 MtrunA17_Chr7g0237061 61.154 260 78 2 297 556 1 237 1.59e-106 319
Msa0894140 MtrunA17_Chr2g0310331 36.599 541 331 8 17 554 53 584 2.26e-105 328
Msa0894140 MtrunA17_Chr6g0466021 70.588 204 57 1 1 204 1 201 8.60e-100 300
Msa0894140 MtrunA17_Chr7g0237071 70.297 202 60 0 59 260 1 202 2.26e-97 295
Msa0894140 MtrunA17_Chr2g0323151 35.256 468 288 4 71 534 4 460 3.19e-97 304
Msa0894140 MtrunA17_Chr2g0323131 34.216 491 306 6 49 534 67 545 6.67e-97 305
Msa0894140 MtrunA17_Chr8g0357411 33.272 547 356 5 10 554 48 587 4.18e-95 301
Msa0894140 MtrunA17_Chr4g0048921 32.816 515 333 6 44 554 64 569 4.40e-86 277
Msa0894140 MtrunA17_Chr7g0237021 68.023 172 55 0 385 556 1 172 1.15e-82 255
Msa0894140 MtrunA17_Chr7g0236941 68.023 172 55 0 385 556 1 172 1.15e-82 255
Msa0894140 MtrunA17_Chr4g0048911 30.478 502 335 7 55 548 61 556 2.71e-79 259
Msa0894140 MtrunA17_Chr6g0465941 63.372 172 63 0 385 556 1 172 4.14e-76 238
Msa0894140 MtrunA17_Chr6g0466121 63.372 172 63 0 385 556 1 172 4.14e-76 238
Msa0894140 MtrunA17_Chr6g0465991 63.372 172 63 0 385 556 1 172 4.14e-76 238
Msa0894140 MtrunA17_Chr6g0466091 63.372 172 63 0 385 556 1 172 4.14e-76 238
Msa0894140 MtrunA17_Chr5g0445501 63.372 172 63 0 385 556 1 172 6.70e-76 238
Msa0894140 MtrunA17_Chr6g0465881 62.791 172 64 0 385 556 1 172 2.44e-75 236
Msa0894140 MtrunA17_Chr2g0319081 39.144 327 177 8 233 556 120 427 6.30e-74 241
Msa0894140 MtrunA17_Chr2g0319081 40.984 122 71 1 15 135 19 140 1.58e-23 103
Msa0894140 MtrunA17_Chr2g0280581 28.958 518 343 8 47 547 9 518 7.50e-70 233
Msa0894140 MtrunA17_Chr2g0310401 32.477 428 284 4 130 554 5 430 9.78e-70 230
Msa0894140 MtrunA17_Chr7g0236921 63.924 158 53 1 403 556 1 158 4.76e-69 219
Msa0894140 MtrunA17_Chr3g0108941 28.713 505 348 9 54 550 13 513 1.26e-65 222
Msa0894140 MtrunA17_Chr3g0105691 29.363 487 337 6 54 534 46 531 7.67e-65 221
Msa0894140 MtrunA17_Chr3g0109031 29.072 485 331 8 54 529 13 493 5.92e-64 218
Msa0894140 MtrunA17_Chr3g0109021 29.278 485 330 8 54 529 13 493 1.36e-63 217
Msa0894140 MtrunA17_Chr3g0109001 29.012 486 331 8 54 529 13 494 2.76e-63 216
Msa0894140 MtrunA17_Chr7g0236931 61.039 154 57 1 403 556 1 151 3.24e-63 204
Msa0894140 MtrunA17_Chr3g0108981 28.970 466 320 5 73 529 6 469 1.89e-62 213
Msa0894140 MtrunA17_Chr3g0108961 28.970 466 320 5 73 529 6 469 1.89e-62 213
Msa0894140 MtrunA17_Chr6g0477111 28.571 476 328 7 73 539 6 478 2.91e-62 213
Msa0894140 MtrunA17_Chr3g0099031 29.167 504 346 9 54 550 13 512 5.38e-62 212
Msa0894140 MtrunA17_Chr3g0108991 28.571 483 336 8 54 529 13 493 3.05e-61 210
Msa0894140 MtrunA17_Chr3g0108951 28.571 483 336 8 54 529 13 493 3.05e-61 210
Msa0894140 MtrunA17_Chr3g0108971 28.448 464 324 7 73 529 6 468 2.74e-60 207
Msa0894140 MtrunA17_Chr3g0109011 28.326 466 322 7 73 529 6 468 5.90e-60 206
Msa0894140 MtrunA17_Chr7g0236981 67.407 135 41 1 1 135 1 132 1.31e-58 191
Msa0894140 MtrunA17_Chr7g0233861 65.185 135 38 1 196 330 33 158 2.58e-53 179
Msa0894140 MtrunA17_Chr6g0477121 28.395 405 279 6 133 529 10 411 6.67e-53 186
Msa0894140 MtrunA17_Chr7g0217361 32.000 300 203 1 255 553 8 307 9.16e-46 163
Msa0894140 MtrunA17_Chr8g0357221 36.546 249 151 3 10 257 48 290 2.63e-41 150
Msa0894140 MtrunA17_Chr5g0445521 66.327 98 33 0 1 98 1 98 1.70e-40 142
Msa0894140 MtrunA17_Chr3g0101681 26.012 519 338 16 69 554 275 780 1.03e-35 142
Msa0894140 MtrunA17_Chr5g0445401 68.421 95 26 2 166 257 1 94 1.21e-33 123
Msa0894140 MtrunA17_Chr2g0310121 27.446 368 233 10 69 409 274 634 7.40e-33 134
Msa0894140 MtrunA17_Chr3g0082711 50.000 116 41 1 441 556 1 99 2.53e-32 119
Msa0894140 MtrunA17_Chr8g0357231 28.682 258 182 2 298 554 1 257 4.61e-32 124
Msa0894140 MtrunA17_Chr7g0259881 27.407 270 164 6 73 313 232 498 1.26e-23 105
Msa0894140 MtrunA17_Chr7g0218001 29.740 269 157 6 73 310 349 616 6.39e-23 103
Msa0894140 MtrunA17_Chr7g0217351 29.954 217 143 5 46 258 62 273 1.19e-20 92.8
Msa0894140 MtrunA17_Chr2g0281651 23.948 309 222 8 233 535 43 344 5.89e-18 86.3
Msa0894140 MtrunA17_Chr7g0218041 30.380 237 140 6 120 332 3 238 8.10e-14 73.6
Msa0894140 MtrunA17_Chr2g0310411 32.787 122 74 3 10 131 51 164 4.94e-13 67.4
Msa0894140 MtrunA17_Chr4g0008631 37.349 83 50 2 475 556 1 82 2.02e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0894140 AT5G23960.2 37.912 546 334 4 13 556 3 545 8.94e-143 423
Msa0894140 AT5G23960.1 37.887 549 332 6 13 556 3 547 1.89e-141 420
Msa0894140 AT1G70080.1 36.445 557 344 7 8 556 57 611 3.75e-127 385
Msa0894140 AT3G14490.1 36.929 547 333 7 17 556 60 601 1.18e-121 371
Msa0894140 AT3G14520.1 35.675 541 338 5 22 556 68 604 2.58e-120 368
Msa0894140 AT1G31950.3 35.219 548 332 6 22 556 70 607 2.08e-118 363
Msa0894140 AT1G31950.1 35.490 541 339 5 22 556 70 606 1.16e-117 361
Msa0894140 AT3G14540.1 35.741 540 339 4 22 556 65 601 2.07e-117 360
Msa0894140 AT5G44630.1 34.854 548 340 7 18 554 14 555 7.53e-114 349
Msa0894140 AT3G29410.1 34.622 543 349 5 17 556 64 603 2.63e-112 347
Msa0894140 AT4G20210.1 33.759 548 350 7 17 556 58 600 7.14e-112 346
Msa0894140 AT3G32030.1 33.704 540 350 6 22 556 68 604 2.36e-111 345
Msa0894140 AT1G33750.1 33.645 535 349 4 24 556 73 603 4.85e-110 341
Msa0894140 AT4G13300.1 34.508 539 342 7 25 556 20 554 8.49e-109 336
Msa0894140 AT3G29410.2 35.378 489 312 3 70 556 12 498 4.61e-108 333
Msa0894140 AT4G20200.1 34.774 532 314 10 47 556 84 604 8.03e-108 335
Msa0894140 AT4G15870.1 34.011 541 331 9 25 556 75 598 4.01e-104 326
Msa0894140 AT4G13280.2 33.892 537 344 7 27 556 22 554 2.35e-103 322
Msa0894140 AT3G29190.1 32.759 522 335 7 45 556 86 601 7.77e-102 320
Msa0894140 AT3G14540.2 37.220 446 273 3 22 463 65 507 3.23e-101 315
Msa0894140 AT1G31950.2 36.667 450 263 5 22 459 70 509 8.24e-101 315
Msa0894140 AT3G29110.1 33.700 546 349 8 17 554 55 595 5.35e-98 310
Msa0894140 AT4G20230.1 32.588 537 348 8 25 552 70 601 6.24e-98 310
Msa0894140 AT4G20230.2 32.588 537 348 8 25 552 82 613 1.09e-97 310
Msa0894140 AT2G23230.2 33.516 546 348 9 16 551 55 595 1.32e-97 309
Msa0894140 AT1G66020.1 31.868 546 363 6 17 556 56 598 3.21e-95 302
Msa0894140 AT2G23230.1 33.333 546 344 10 16 551 55 590 4.21e-95 302
Msa0894140 AT4G13280.1 32.775 537 320 8 27 556 22 524 3.82e-93 295
Msa0894140 AT1G48800.1 31.502 546 358 9 17 552 63 602 1.58e-91 293
Msa0894140 AT4G16730.1 32.239 518 329 9 52 554 27 537 6.62e-91 290
Msa0894140 AT4G16730.2 32.265 499 317 8 73 556 1 493 2.79e-89 284
Msa0894140 AT4G16740.1 31.418 557 357 12 12 556 21 564 1.22e-85 276
Msa0894140 AT2G24210.1 30.714 560 367 11 10 556 39 590 3.75e-84 273
Msa0894140 AT1G61680.1 32.000 500 326 5 54 546 77 569 1.07e-83 271
Msa0894140 AT5G48110.1 37.026 343 211 5 215 556 1 339 1.83e-81 258
Msa0894140 AT1G61680.2 31.600 500 321 6 54 546 77 562 2.57e-80 262
Msa0894140 AT1G48820.1 30.241 539 326 11 17 549 63 557 1.88e-78 258
Msa0894140 AT3G25820.1 29.590 561 365 13 15 556 45 594 9.32e-77 254
Msa0894140 AT3G25830.1 29.590 561 365 13 15 556 45 594 9.32e-77 254
Msa0894140 AT3G25810.1 28.801 559 375 9 15 556 45 597 1.25e-76 254
Msa0894140 AT4G16740.2 34.474 380 230 7 12 381 21 391 1.01e-67 224
Msa0894140 AT1G66020.2 34.417 369 233 6 17 379 56 421 1.66e-66 222
Msa0894140 AT3G25820.2 31.959 388 241 9 15 389 45 422 4.19e-60 206
Msa0894140 AT4G16740.4 34.862 327 195 6 14 330 23 341 1.65e-57 197
Msa0894140 AT4G16740.3 34.862 327 195 6 14 330 23 341 1.65e-57 197
Msa0894140 AT3G25820.4 32.622 328 200 7 15 330 45 363 1.40e-52 184
Msa0894140 AT3G25820.3 32.622 328 200 7 15 330 45 363 1.40e-52 184
Msa0894140 AT1G79460.1 24.478 527 339 20 69 556 273 779 5.19e-30 125
Msa0894140 AT1G61120.1 23.438 512 356 10 68 556 286 784 6.69e-26 113
Msa0894140 AT4G02780.1 29.412 255 152 5 73 300 334 587 1.92e-22 102

Find 93 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCTTGCTGTGCTATTT+AGG 0.103456 6_1:+79398003 Msa0894140:CDS
TCTACTTGCATTGGCAAAAT+TGG 0.119753 6_1:+79399124 Msa0894140:CDS
TTCTCTTGCTGTGCTATTTA+GGG 0.189824 6_1:+79398004 Msa0894140:CDS
GGTTCATGGTGAAAATATTT+TGG 0.219650 6_1:+79398926 Msa0894140:CDS
TTTCCTTGCTTGAGAATATT+GGG 0.241792 6_1:-79399408 None:intergenic
ATGCAAGTAGAATTTCATTA+TGG 0.248221 6_1:-79399112 None:intergenic
AGAAGAAATTAGTCAAGTTT+TGG 0.262222 6_1:+79397923 Msa0894140:CDS
AAGCATTGTCTATTTCCTTT+TGG 0.266631 6_1:-79401140 None:intergenic
TACAAGAGTTATGTTCAAAA+TGG 0.269625 6_1:+79397954 Msa0894140:CDS
GTCATCAATGTATGATAAAA+TGG 0.310334 6_1:-79399450 None:intergenic
CAGATTTCCACCCTAGCGTT+TGG 0.311610 6_1:+79397548 Msa0894140:CDS
AGATTTCCACCCTAGCGTTT+GGG 0.325288 6_1:+79397549 Msa0894140:CDS
TGCAAAACCGATTTCTCATT+AGG 0.335406 6_1:-79397514 None:intergenic
TAATTGCTTGGAGGATCTTC+CGG 0.335446 6_1:+79399814 Msa0894140:CDS
TGAGGGAATATGATATGAAT+AGG 0.340079 6_1:+79401097 Msa0894140:CDS
CTGCAATTCATTGCAGACTT+AGG 0.343009 6_1:+79400887 Msa0894140:CDS
TTCCTTGCTCGTCCTTGAAT+TGG 0.345782 6_1:-79398836 None:intergenic
GAGTAGTAGAATGTTGCTTT+TGG 0.347068 6_1:+79399363 Msa0894140:CDS
TGTGCCGCAATATTCATATC+AGG 0.348479 6_1:-79397783 None:intergenic
CTTCAATCCTAATGAGAAAT+CGG 0.354762 6_1:+79397507 Msa0894140:CDS
TCAGTATGCTTCAGAATCTA+TGG 0.376448 6_1:+79397585 Msa0894140:CDS
TGCAAGTAGAATTTCATTAT+GGG 0.387262 6_1:-79399111 None:intergenic
CGTACTTGGAATGTTATATG+AGG 0.388936 6_1:+79401079 Msa0894140:CDS
GGATGAATCTTGCTCATAGA+TGG 0.390050 6_1:-79399090 None:intergenic
CAACAAAAGACATCTTTGAT+TGG 0.390973 6_1:+79400833 Msa0894140:CDS
GATTGACTCGATATGTCGTT+TGG 0.393872 6_1:+79397881 Msa0894140:CDS
AGAGCATGTTTCTTCGTACT+TGG 0.400274 6_1:+79401065 Msa0894140:CDS
TAAAGCAACTTCGTGTAATC+CGG 0.404734 6_1:-79399833 None:intergenic
GTTGCTTTATAAATCACTCT+TGG 0.404999 6_1:+79399847 Msa0894140:CDS
TGCATGTACTCCGCTGTTGT+TGG 0.426336 6_1:-79400742 None:intergenic
AACAAAAGACATCTTTGATT+GGG 0.428042 6_1:+79400834 Msa0894140:CDS
TGCAATTCATTGCAGACTTA+GGG 0.432890 6_1:+79400888 Msa0894140:CDS
TGAATATTTAAGTATGTCTT+CGG 0.446316 6_1:+79397477 None:intergenic
AAAAGGAAATAGACAATGCT+TGG 0.452552 6_1:+79401142 Msa0894140:CDS
TAGGTGGGATATTAATTGCT+TGG 0.452782 6_1:+79399802 Msa0894140:intron
TACGACTTCTTACATTGGAA+TGG 0.454510 6_1:+79400801 Msa0894140:CDS
TAATGAAATTCTACTTGCAT+TGG 0.460272 6_1:+79399115 Msa0894140:CDS
ACGACTTCTTACATTGGAAT+GGG 0.460983 6_1:+79400802 Msa0894140:CDS
TTGCAAGAGAAGGACTCAAT+CGG 0.462800 6_1:-79398995 None:intergenic
TTCTGGTCACCTTCAGTCCA+TGG 0.466911 6_1:+79398968 Msa0894140:CDS
GATGACACATATGATGCATA+TGG 0.467097 6_1:+79399467 Msa0894140:CDS
GAGCAAGAAATGAAGAAAGA+AGG 0.470516 6_1:+79399887 Msa0894140:CDS
GAGGGAATATGATATGAATA+GGG 0.475500 6_1:+79401098 Msa0894140:CDS
ATTGACTCGATATGTCGTTT+GGG 0.487347 6_1:+79397882 Msa0894140:CDS
ATAGTTAGCATTCAACCATC+TGG 0.489896 6_1:-79400716 None:intergenic
ACTACTCTATCTCGTGCATA+AGG 0.492838 6_1:-79399347 None:intergenic
ATATTGGGGCTCAAAATATA+CGG 0.495144 6_1:-79399393 None:intergenic
TGCTTGGAAAGATATAAATC+AGG 0.496605 6_1:+79401158 Msa0894140:CDS
CTGTGCTATTTAGGGTGTTG+AGG 0.502767 6_1:+79398012 Msa0894140:CDS
TTGAGAACACACGTCAGAAT+AGG 0.502783 6_1:-79401210 None:intergenic
ATATAGGTGGTGGAAGGAGT+TGG 0.505587 6_1:+79399307 Msa0894140:intron
CATGGACTTTACGTTTCACC+TGG 0.512238 6_1:+79398038 Msa0894140:CDS
AGGACTCAATCGGGTGGCCA+TGG 0.512884 6_1:-79398985 None:intergenic
AGACGTGTTCAACCAATTCA+AGG 0.513816 6_1:+79398824 Msa0894140:intron
TAACTTCTTGCCACTAGCCT+AGG 0.521919 6_1:-79399062 None:intergenic
AGGAAATTTCAGTGAAACAT+TGG 0.522145 6_1:+79398854 Msa0894140:CDS
GCCTCACATATGATGGTTCA+TGG 0.522278 6_1:+79398912 Msa0894140:CDS
TAAGAAGTCGTAGCCAACAC+TGG 0.522936 6_1:-79400790 None:intergenic
ATGATGTGCTAACCTTTCAA+TGG 0.523871 6_1:-79399522 None:intergenic
AATAAATGCTCAAATTTCCA+CGG 0.527066 6_1:-79401331 None:intergenic
GTGGGATATTAATTGCTTGG+AGG 0.529634 6_1:+79399805 Msa0894140:CDS
TGGCCTCACTCATATAAGCT+TGG 0.531321 6_1:-79400696 None:intergenic
TTCCTTGCTTGAGAATATTG+GGG 0.534381 6_1:-79399407 None:intergenic
TGCTATTCAAGAATGCCAAA+AGG 0.535707 6_1:+79401125 Msa0894140:CDS
AACATTGGTCGTAGATGTTG+AGG 0.541350 6_1:+79398869 Msa0894140:CDS
TGCAAGAGAAGGACTCAATC+GGG 0.546913 6_1:-79398994 None:intergenic
AGCCCCAATATTCTCAAGCA+AGG 0.547455 6_1:+79399405 Msa0894140:CDS
TTTAGGGTGTTGAGGCAACA+TGG 0.552007 6_1:+79398020 Msa0894140:CDS
CTTATATGAGTGAGGCCAGA+TGG 0.552296 6_1:+79400701 Msa0894140:CDS
ATAAATGCTCAAATTTCCAC+GGG 0.561349 6_1:-79401330 None:intergenic
ATCGGGTGGCCATGGACTGA+AGG 0.566605 6_1:-79398977 None:intergenic
ATAGGTAACGGAACTTCAGT+TGG 0.566914 6_1:-79401192 None:intergenic
GTACTTGGAATGTTATATGA+GGG 0.567173 6_1:+79401080 Msa0894140:CDS
CTTTGTATATAGGTGGTGGA+AGG 0.567617 6_1:+79399301 Msa0894140:intron
GTATGAAGCCTCACATATGA+TGG 0.567934 6_1:+79398905 Msa0894140:CDS
ATCAAGTGGTTACCCAGTGT+TGG 0.570889 6_1:+79400777 Msa0894140:CDS
ATAGCACAGCAAGAGAATGA+AGG 0.572946 6_1:-79397998 None:intergenic
TTGGCTACGACTTCTTACAT+TGG 0.586299 6_1:+79400796 Msa0894140:CDS
CACATATCAACAATATCAAG+TGG 0.594145 6_1:+79400763 Msa0894140:CDS
GATTTCCACCCTAGCGTTTG+GGG 0.596026 6_1:+79397550 Msa0894140:CDS
AATCTCCCCAAACGCTAGGG+TGG 0.601357 6_1:-79397555 None:intergenic
TGATTTGCTTGTCAATCCCG+TGG 0.603076 6_1:+79401314 Msa0894140:CDS
GATAACTACACACACTCTGA+CGG 0.610210 6_1:+79401270 Msa0894140:CDS
AAGAAGTCGTAGCCAACACT+GGG 0.613680 6_1:-79400789 None:intergenic
AACCAATTCAAGGACGAGCA+AGG 0.615624 6_1:+79398834 Msa0894140:CDS
GGAACCTGATATGAATATTG+CGG 0.628405 6_1:+79397779 Msa0894140:intron
ACATTGGTCGTAGATGTTGA+GGG 0.633793 6_1:+79398870 Msa0894140:CDS
ACCATGAACCATCATATGTG+AGG 0.634158 6_1:-79398913 None:intergenic
AATCCAAGCTTATATGAGTG+AGG 0.644710 6_1:+79400693 Msa0894140:CDS
GGATGAAATTGTGTCTAGCG+AGG 0.663791 6_1:+79400909 Msa0894140:CDS
ACACACGTCAGAATAGGTAA+CGG 0.688917 6_1:-79401204 None:intergenic
AAGAGAAGGACTCAATCGGG+TGG 0.695745 6_1:-79398991 None:intergenic
TAACTATACACCAACAACAG+CGG 0.710034 6_1:+79400732 Msa0894140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATTTTTTTTAAATT+AGG - chr6_1:79399225-79399244 None:intergenic 0.0%
!!! TATTATATTAATTTTTAAAA+CGG - chr6_1:79400948-79400967 None:intergenic 0.0%
!!! CATTTTTTATGTTTTTAATT+TGG + chr6_1:79398125-79398144 Msa0894140:intron 10.0%
!!! AAGATAATAATTTTTTTTTG+TGG - chr6_1:79398522-79398541 None:intergenic 10.0%
!! ATTTATAATTTATTCAACAA+TGG + chr6_1:79400015-79400034 Msa0894140:intron 10.0%
!!! ATTTCATTTTAAATTTTGTA+TGG + chr6_1:79400045-79400064 Msa0894140:intron 10.0%
!!! AAATATTTTTACATCATTTT+AGG + chr6_1:79400146-79400165 Msa0894140:intron 10.0%
!! ATGAGTAAATAAATAGTATA+AGG - chr6_1:79397738-79397757 None:intergenic 15.0%
!! ACAAATTGATAAACTAAAAA+AGG + chr6_1:79397803-79397822 Msa0894140:CDS 15.0%
!! TAATATTTGACTATATTCAT+GGG + chr6_1:79398232-79398251 Msa0894140:intron 15.0%
!! TAATATGAATGTCTAAAAAA+TGG + chr6_1:79398261-79398280 Msa0894140:intron 15.0%
!! GATAATAATTAAAACAAATG+AGG - chr6_1:79398418-79398437 None:intergenic 15.0%
!!! ATAATAATTTTTTTTTGTGG+TGG - chr6_1:79398519-79398538 None:intergenic 15.0%
!! AATATTAATGTTATACATGT+AGG + chr6_1:79398595-79398614 Msa0894140:intron 15.0%
!! TATAAATAAGAAACTAATAC+AGG - chr6_1:79398743-79398762 None:intergenic 15.0%
!! ATAAATTAATATGTCTCTAA+TGG + chr6_1:79398764-79398783 Msa0894140:intron 15.0%
!!! TATTTTTTTTAAATTAGGCA+GGG - chr6_1:79399220-79399239 None:intergenic 15.0%
!!! ATATTTTTTTTAAATTAGGC+AGG - chr6_1:79399221-79399240 None:intergenic 15.0%
!!! TATTTTTTGTCTTTGTATAT+AGG + chr6_1:79399291-79399310 Msa0894140:intron 15.0%
!! GATTAAAGATAAATTTCATA+TGG - chr6_1:79399601-79399620 None:intergenic 15.0%
!!! TCATAATGATATATTTTTCT+TGG - chr6_1:79400207-79400226 None:intergenic 15.0%
!! CTATCAAAGAATAAAAATTA+AGG + chr6_1:79400419-79400438 Msa0894140:intron 15.0%
!! TCATAAAATTAAGATTACAA+AGG - chr6_1:79400525-79400544 None:intergenic 15.0%
!! TTAACATCATTTAATTACAT+AGG + chr6_1:79400608-79400627 Msa0894140:intron 15.0%
!! AATTCTTTAAATCAACAACA+AGG + chr6_1:79397613-79397632 Msa0894140:intron 20.0%
!! AATTGATAAACTAAAAAAGG+AGG + chr6_1:79397806-79397825 Msa0894140:CDS 20.0%
!!! CTTGTTCACATTTTTTTTTA+AGG + chr6_1:79398075-79398094 Msa0894140:intron 20.0%
!! GTAATATTTGACTATATTCA+TGG + chr6_1:79398231-79398250 Msa0894140:intron 20.0%
!!! AATCCTTTTTTTACTAAAAG+TGG - chr6_1:79398291-79398310 None:intergenic 20.0%
!! GACAATTCATAAAATATGTA+CGG + chr6_1:79398474-79398493 Msa0894140:intron 20.0%
!! AAGTTTCTTACTTAATAAGA+TGG - chr6_1:79398663-79398682 None:intergenic 20.0%
!! ATGGTTGTTTAATATTATTG+TGG + chr6_1:79398783-79398802 Msa0894140:intron 20.0%
!! ACAAAGACAAAAAATAGTAT+AGG - chr6_1:79399287-79399306 None:intergenic 20.0%
!!! TGAATTAGAACTTTTTACAA+AGG + chr6_1:79399499-79399518 Msa0894140:CDS 20.0%
!!! TTGCAATCAAAATGATTTTT+AGG + chr6_1:79399783-79399802 Msa0894140:intron 20.0%
!!! AATCAAAATGATTTTTAGGT+GGG + chr6_1:79399787-79399806 Msa0894140:intron 20.0%
!!! AATTTTGTATGGTTATCAAA+TGG + chr6_1:79400056-79400075 Msa0894140:intron 20.0%
!! TCATTATGAAGTTATTTGAT+TGG + chr6_1:79400218-79400237 Msa0894140:intron 20.0%
!! GATTAAATGCAATGTTAAAA+AGG + chr6_1:79400390-79400409 Msa0894140:intron 20.0%
!! TTTCTTTATACTTTAATCAG+TGG + chr6_1:79400551-79400570 Msa0894140:intron 20.0%
!!! TTTAATTACATAGGTCTTTT+TGG + chr6_1:79400617-79400636 Msa0894140:intron 20.0%
!! AGAAGAAATTAGTCAAGTTT+TGG + chr6_1:79397923-79397942 Msa0894140:CDS 25.0%
! TACAAGAGTTATGTTCAAAA+TGG + chr6_1:79397954-79397973 Msa0894140:CDS 25.0%
!!! AGACCACTTTTAGTAAAAAA+AGG + chr6_1:79398285-79398304 Msa0894140:intron 25.0%
! TGCAAGTAGAATTTCATTAT+GGG - chr6_1:79399114-79399133 None:intergenic 25.0%
! ATGCAAGTAGAATTTCATTA+TGG - chr6_1:79399115-79399134 None:intergenic 25.0%
! TAATGAAATTCTACTTGCAT+TGG + chr6_1:79399115-79399134 Msa0894140:CDS 25.0%
!! TTCCAAATTCTTTTTGATGT+AGG - chr6_1:79399169-79399188 None:intergenic 25.0%
!! TTTTTGTCTTTGTATATAGG+TGG + chr6_1:79399294-79399313 Msa0894140:intron 25.0%
! GTCATCAATGTATGATAAAA+TGG - chr6_1:79399453-79399472 None:intergenic 25.0%
!!! ATGGTTTTAACTCTAAAGTT+TGG - chr6_1:79399582-79399601 None:intergenic 25.0%
!!! CAATCAAAATGATTTTTAGG+TGG + chr6_1:79399786-79399805 Msa0894140:intron 25.0%
!!! ACTCTTACTTCTTTTAAGAA+GGG - chr6_1:79399932-79399951 None:intergenic 25.0%
!!! AACTCTTACTTCTTTTAAGA+AGG - chr6_1:79399933-79399952 None:intergenic 25.0%
! TATCCATTGTTATATGAACT+TGG + chr6_1:79400299-79400318 Msa0894140:intron 25.0%
! AACAAAAGACATCTTTGATT+GGG + chr6_1:79400834-79400853 Msa0894140:CDS 25.0%
CTTCAATCCTAATGAGAAAT+CGG + chr6_1:79397507-79397526 Msa0894140:CDS 30.0%
! GAATCTGGGATAATATTAAG+TGG - chr6_1:79397699-79397718 None:intergenic 30.0%
AATGTGAGTAACTTGAATCT+GGG - chr6_1:79397713-79397732 None:intergenic 30.0%
AAATGTGAGTAACTTGAATC+TGG - chr6_1:79397714-79397733 None:intergenic 30.0%
TTAAAAACAGAGAAACCCTT+GGG + chr6_1:79397846-79397865 Msa0894140:CDS 30.0%
! CAAGTTGAGATATATATACC+AGG - chr6_1:79398059-79398078 None:intergenic 30.0%
!! ATGAGTGTCTTTTGTTTGAT+CGG + chr6_1:79398360-79398379 Msa0894140:intron 30.0%
ATCGGATACATATTAGACAT+CGG + chr6_1:79398378-79398397 Msa0894140:intron 30.0%
TCATAAAATATGTACGGTCT+AGG + chr6_1:79398480-79398499 Msa0894140:intron 30.0%
CATAAAATATGTACGGTCTA+GGG + chr6_1:79398481-79398500 Msa0894140:intron 30.0%
TAATAAGATGGCTACCATAT+GGG - chr6_1:79398651-79398670 None:intergenic 30.0%
TTAATAAGATGGCTACCATA+TGG - chr6_1:79398652-79398671 None:intergenic 30.0%
AGGAAATTTCAGTGAAACAT+TGG + chr6_1:79398854-79398873 Msa0894140:CDS 30.0%
! GGTTCATGGTGAAAATATTT+TGG + chr6_1:79398926-79398945 Msa0894140:CDS 30.0%
!! TGGTGAAAATATTTTGGAAG+AGG + chr6_1:79398932-79398951 Msa0894140:CDS 30.0%
!! AAATATTTTGGAAGAGGCTT+TGG + chr6_1:79398938-79398957 Msa0894140:CDS 30.0%
!! TTTACTTTTGTTGCAAGAGA+AGG - chr6_1:79399008-79399027 None:intergenic 30.0%
! ATTCTTTTTGATGTAGGCTT+TGG - chr6_1:79399163-79399182 None:intergenic 30.0%
AGCCTACATCAAAAAGAATT+TGG + chr6_1:79399164-79399183 Msa0894140:CDS 30.0%
!!! AGTAGTAGAATGTTGCTTTT+GGG + chr6_1:79399364-79399383 Msa0894140:CDS 30.0%
ATATTGGGGCTCAAAATATA+CGG - chr6_1:79399396-79399415 None:intergenic 30.0%
TTTCCTTGCTTGAGAATATT+GGG - chr6_1:79399411-79399430 None:intergenic 30.0%
! TTTTCCTTGCTTGAGAATAT+TGG - chr6_1:79399412-79399431 None:intergenic 30.0%
! TTTTTACAAAGGCCATTGAA+AGG + chr6_1:79399510-79399529 Msa0894140:CDS 30.0%
CTAGTCATCAAGTTTAGATT+TGG + chr6_1:79399620-79399639 Msa0894140:intron 30.0%
AATTTATCCATCTCCAATCT+TGG + chr6_1:79399664-79399683 Msa0894140:intron 30.0%
ATTGAATTAGCAACCAAGAT+TGG - chr6_1:79399680-79399699 None:intergenic 30.0%
! GTTGCTTTATAAATCACTCT+TGG + chr6_1:79399847-79399866 Msa0894140:CDS 30.0%
!! CTCTTACTTCTTTTAAGAAG+GGG - chr6_1:79399931-79399950 None:intergenic 30.0%
! TTTTCTTGGTCAAGTTATCT+AGG - chr6_1:79400193-79400212 None:intergenic 30.0%
GAACCAAGTTCATATAACAA+TGG - chr6_1:79400305-79400324 None:intergenic 30.0%
AAGAAAAATGTTTCATCACG+AGG + chr6_1:79400361-79400380 Msa0894140:intron 30.0%
AGGCAAAAACTTATTATCCA+TGG + chr6_1:79400439-79400458 Msa0894140:intron 30.0%
CACATATCAACAATATCAAG+TGG + chr6_1:79400763-79400782 Msa0894140:CDS 30.0%
CAACAAAAGACATCTTTGAT+TGG + chr6_1:79400833-79400852 Msa0894140:CDS 30.0%
GTACTTGGAATGTTATATGA+GGG + chr6_1:79401080-79401099 Msa0894140:CDS 30.0%
TGAGGGAATATGATATGAAT+AGG + chr6_1:79401097-79401116 Msa0894140:CDS 30.0%
GAGGGAATATGATATGAATA+GGG + chr6_1:79401098-79401117 Msa0894140:CDS 30.0%
!! AAGCATTGTCTATTTCCTTT+TGG - chr6_1:79401143-79401162 None:intergenic 30.0%
AAAAGGAAATAGACAATGCT+TGG + chr6_1:79401142-79401161 Msa0894140:CDS 30.0%
TGCTTGGAAAGATATAAATC+AGG + chr6_1:79401158-79401177 Msa0894140:CDS 30.0%
! TGCAAAACCGATTTCTCATT+AGG - chr6_1:79397517-79397536 None:intergenic 35.0%
TCAGTATGCTTCAGAATCTA+TGG + chr6_1:79397585-79397604 Msa0894140:CDS 35.0%
ATGCATGTTCGAATACATAC+AGG + chr6_1:79397758-79397777 Msa0894140:intron 35.0%
GGAACCTGATATGAATATTG+CGG + chr6_1:79397779-79397798 Msa0894140:intron 35.0%
CTTAAAAACAGAGAAACCCT+TGG + chr6_1:79397845-79397864 Msa0894140:CDS 35.0%
!!! ATCAAGTTGACTTTTCCCAA+GGG - chr6_1:79397864-79397883 None:intergenic 35.0%
!!! AATCAAGTTGACTTTTCCCA+AGG - chr6_1:79397865-79397884 None:intergenic 35.0%
!! ATTGACTCGATATGTCGTTT+GGG + chr6_1:79397882-79397901 Msa0894140:CDS 35.0%
!! ATTCTCTTGCTGTGCTATTT+AGG + chr6_1:79398003-79398022 Msa0894140:CDS 35.0%
!! TTCTCTTGCTGTGCTATTTA+GGG + chr6_1:79398004-79398023 Msa0894140:CDS 35.0%
TAAGCTTAACTCAGTTGGTT+TGG + chr6_1:79398452-79398471 Msa0894140:intron 35.0%
!!! ATTTTTTTTTGTGGTGGCCA+GGG - chr6_1:79398513-79398532 None:intergenic 35.0%
!!! AATTTTTTTTTGTGGTGGCC+AGG - chr6_1:79398514-79398533 None:intergenic 35.0%
! TCTACTTGCATTGGCAAAAT+TGG + chr6_1:79399124-79399143 Msa0894140:CDS 35.0%
TTGTCTTTGTATATAGGTGG+TGG + chr6_1:79399297-79399316 Msa0894140:intron 35.0%
!!! GAGTAGTAGAATGTTGCTTT+TGG + chr6_1:79399363-79399382 Msa0894140:CDS 35.0%
TTCCTTGCTTGAGAATATTG+GGG - chr6_1:79399410-79399429 None:intergenic 35.0%
GATGACACATATGATGCATA+TGG + chr6_1:79399467-79399486 Msa0894140:CDS 35.0%
ATGATGTGCTAACCTTTCAA+TGG - chr6_1:79399525-79399544 None:intergenic 35.0%
TAGGTGGGATATTAATTGCT+TGG + chr6_1:79399802-79399821 Msa0894140:intron 35.0%
TAAAGCAACTTCGTGTAATC+CGG - chr6_1:79399836-79399855 None:intergenic 35.0%
GAGCAAGAAATGAAGAAAGA+AGG + chr6_1:79399887-79399906 Msa0894140:CDS 35.0%
!! TTCTTTTAAGAAGGGGTCAA+GGG - chr6_1:79399924-79399943 None:intergenic 35.0%
TGGTTATCAAATGGACGTTT+AGG + chr6_1:79400065-79400084 Msa0894140:intron 35.0%
GAACTGAGTTCATATAACCA+TGG - chr6_1:79400459-79400478 None:intergenic 35.0%
AATCCAAGCTTATATGAGTG+AGG + chr6_1:79400693-79400712 Msa0894140:CDS 35.0%
ATAGTTAGCATTCAACCATC+TGG - chr6_1:79400719-79400738 None:intergenic 35.0%
TAACTATACACCAACAACAG+CGG + chr6_1:79400732-79400751 Msa0894140:CDS 35.0%
TACGACTTCTTACATTGGAA+TGG + chr6_1:79400801-79400820 Msa0894140:CDS 35.0%
ACGACTTCTTACATTGGAAT+GGG + chr6_1:79400802-79400821 Msa0894140:CDS 35.0%
! GCAGCAGCATTAACAATTTT+TGG - chr6_1:79400871-79400890 None:intergenic 35.0%
TGCAATTCATTGCAGACTTA+GGG + chr6_1:79400888-79400907 Msa0894140:CDS 35.0%
CGTACTTGGAATGTTATATG+AGG + chr6_1:79401079-79401098 Msa0894140:CDS 35.0%
TGCTATTCAAGAATGCCAAA+AGG + chr6_1:79401125-79401144 Msa0894140:CDS 35.0%
AAAAATCTCCCCAAACGCTA+GGG - chr6_1:79397561-79397580 None:intergenic 40.0%
AAAAAATCTCCCCAAACGCT+AGG - chr6_1:79397562-79397581 None:intergenic 40.0%
TGTGCCGCAATATTCATATC+AGG - chr6_1:79397786-79397805 None:intergenic 40.0%
!! GATTGACTCGATATGTCGTT+TGG + chr6_1:79397881-79397900 Msa0894140:CDS 40.0%
ATAGCACAGCAAGAGAATGA+AGG - chr6_1:79398001-79398020 None:intergenic 40.0%
CTTAGACCAGTTTACCCATA+TGG + chr6_1:79398634-79398653 Msa0894140:intron 40.0%
AGACGTGTTCAACCAATTCA+AGG + chr6_1:79398824-79398843 Msa0894140:intron 40.0%
AACATTGGTCGTAGATGTTG+AGG + chr6_1:79398869-79398888 Msa0894140:CDS 40.0%
ACATTGGTCGTAGATGTTGA+GGG + chr6_1:79398870-79398889 Msa0894140:CDS 40.0%
GTATGAAGCCTCACATATGA+TGG + chr6_1:79398905-79398924 Msa0894140:CDS 40.0%
ACCATGAACCATCATATGTG+AGG - chr6_1:79398916-79398935 None:intergenic 40.0%
TTGCAAGAGAAGGACTCAAT+CGG - chr6_1:79398998-79399017 None:intergenic 40.0%
GGATGAATCTTGCTCATAGA+TGG - chr6_1:79399093-79399112 None:intergenic 40.0%
! TTTTTAAATTAGGCAGGGCG+TGG - chr6_1:79399215-79399234 None:intergenic 40.0%
!! CTTTGTATATAGGTGGTGGA+AGG + chr6_1:79399301-79399320 Msa0894140:intron 40.0%
ACTACTCTATCTCGTGCATA+AGG - chr6_1:79399350-79399369 None:intergenic 40.0%
TTAGCAACCAAGATTGGAGA+TGG - chr6_1:79399674-79399693 None:intergenic 40.0%
GTGGGATATTAATTGCTTGG+AGG + chr6_1:79399805-79399824 Msa0894140:CDS 40.0%
TAATTGCTTGGAGGATCTTC+CGG + chr6_1:79399814-79399833 Msa0894140:CDS 40.0%
!! CTTCTTTTAAGAAGGGGTCA+AGG - chr6_1:79399925-79399944 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG + chr6_1:79400796-79400815 Msa0894140:CDS 40.0%
CTGCAATTCATTGCAGACTT+AGG + chr6_1:79400887-79400906 Msa0894140:CDS 40.0%
AGAGCATGTTTCTTCGTACT+TGG + chr6_1:79401065-79401084 Msa0894140:CDS 40.0%
!! ATAGGTAACGGAACTTCAGT+TGG - chr6_1:79401195-79401214 None:intergenic 40.0%
ACACACGTCAGAATAGGTAA+CGG - chr6_1:79401207-79401226 None:intergenic 40.0%
TTGAGAACACACGTCAGAAT+AGG - chr6_1:79401213-79401232 None:intergenic 40.0%
!! CAATCTCTCGCGTTTTATTG+AGG + chr6_1:79401230-79401249 Msa0894140:CDS 40.0%
GATAACTACACACACTCTGA+CGG + chr6_1:79401270-79401289 Msa0894140:CDS 40.0%
AGATTTCCACCCTAGCGTTT+GGG + chr6_1:79397549-79397568 Msa0894140:CDS 45.0%
!! CTGTGCTATTTAGGGTGTTG+AGG + chr6_1:79398012-79398031 Msa0894140:CDS 45.0%
!! TTTAGGGTGTTGAGGCAACA+TGG + chr6_1:79398020-79398039 Msa0894140:CDS 45.0%
CATGGACTTTACGTTTCACC+TGG + chr6_1:79398038-79398057 Msa0894140:CDS 45.0%
CCAACTGAGTTAAGCTTACG+AGG - chr6_1:79398450-79398469 None:intergenic 45.0%
CCTCGTAAGCTTAACTCAGT+TGG + chr6_1:79398447-79398466 Msa0894140:intron 45.0%
TGGCTACCATATGGGTAAAC+TGG - chr6_1:79398643-79398662 None:intergenic 45.0%
AACCAATTCAAGGACGAGCA+AGG + chr6_1:79398834-79398853 Msa0894140:CDS 45.0%
TTCCTTGCTCGTCCTTGAAT+TGG - chr6_1:79398839-79398858 None:intergenic 45.0%
GCCTCACATATGATGGTTCA+TGG + chr6_1:79398912-79398931 Msa0894140:CDS 45.0%
!!! GAGGCTTTGGCTTTTACTTC+TGG + chr6_1:79398951-79398970 Msa0894140:CDS 45.0%
TGCAAGAGAAGGACTCAATC+GGG - chr6_1:79398997-79399016 None:intergenic 45.0%
CAAAAACTTGCCTAGGCTAG+TGG + chr6_1:79399052-79399071 Msa0894140:CDS 45.0%
! TAACTTCTTGCCACTAGCCT+AGG - chr6_1:79399065-79399084 None:intergenic 45.0%
!! ATATAGGTGGTGGAAGGAGT+TGG + chr6_1:79399307-79399326 Msa0894140:intron 45.0%
AGCCCCAATATTCTCAAGCA+AGG + chr6_1:79399405-79399424 Msa0894140:CDS 45.0%
TGGCCTCACTCATATAAGCT+TGG - chr6_1:79400699-79400718 None:intergenic 45.0%
CTTATATGAGTGAGGCCAGA+TGG + chr6_1:79400701-79400720 Msa0894140:CDS 45.0%
ATCAAGTGGTTACCCAGTGT+TGG + chr6_1:79400777-79400796 Msa0894140:CDS 45.0%
AAGAAGTCGTAGCCAACACT+GGG - chr6_1:79400792-79400811 None:intergenic 45.0%
TAAGAAGTCGTAGCCAACAC+TGG - chr6_1:79400793-79400812 None:intergenic 45.0%
GGATGAAATTGTGTCTAGCG+AGG + chr6_1:79400909-79400928 Msa0894140:CDS 45.0%
!! TGATTTGCTTGTCAATCCCG+TGG + chr6_1:79401314-79401333 Msa0894140:CDS 45.0%
CAGATTTCCACCCTAGCGTT+TGG + chr6_1:79397548-79397567 Msa0894140:CDS 50.0%
GATTTCCACCCTAGCGTTTG+GGG + chr6_1:79397550-79397569 Msa0894140:CDS 50.0%
TTCTGGTCACCTTCAGTCCA+TGG + chr6_1:79398968-79398987 Msa0894140:CDS 50.0%
AAGAGAAGGACTCAATCGGG+TGG - chr6_1:79398994-79399013 None:intergenic 50.0%
CTCTGCGCAAAAACTTGCCT+AGG + chr6_1:79399045-79399064 Msa0894140:CDS 50.0%
TGCATGTACTCCGCTGTTGT+TGG - chr6_1:79400745-79400764 None:intergenic 50.0%
AATCTCCCCAAACGCTAGGG+TGG - chr6_1:79397558-79397577 None:intergenic 55.0%
! ACGGTCTAGGGTTCAAACCC+TGG + chr6_1:79398493-79398512 Msa0894140:intron 55.0%
! ATCGGGTGGCCATGGACTGA+AGG - chr6_1:79398980-79398999 None:intergenic 60.0%
AGGACTCAATCGGGTGGCCA+TGG - chr6_1:79398988-79399007 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 79397490 79401344 79397490 ID=Msa0894140;Name=Msa0894140
chr6_1 mRNA 79397490 79401344 79397490 ID=Msa0894140-mRNA-1;Parent=Msa0894140;Name=Msa0894140-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|1|1|7|0|556
chr6_1 exon 79397490 79397606 79397490 ID=Msa0894140-mRNA-1:exon:13301;Parent=Msa0894140-mRNA-1
chr6_1 exon 79397780 79398059 79397780 ID=Msa0894140-mRNA-1:exon:13302;Parent=Msa0894140-mRNA-1
chr6_1 exon 79398826 79399198 79398826 ID=Msa0894140-mRNA-1:exon:13303;Parent=Msa0894140-mRNA-1
chr6_1 exon 79399313 79399531 79399313 ID=Msa0894140-mRNA-1:exon:13304;Parent=Msa0894140-mRNA-1
chr6_1 exon 79399805 79399943 79399805 ID=Msa0894140-mRNA-1:exon:13305;Parent=Msa0894140-mRNA-1
chr6_1 exon 79400682 79400930 79400682 ID=Msa0894140-mRNA-1:exon:13306;Parent=Msa0894140-mRNA-1
chr6_1 exon 79401051 79401344 79401051 ID=Msa0894140-mRNA-1:exon:13307;Parent=Msa0894140-mRNA-1
chr6_1 CDS 79397490 79397606 79397490 ID=Msa0894140-mRNA-1:cds;Parent=Msa0894140-mRNA-1
chr6_1 CDS 79397780 79398059 79397780 ID=Msa0894140-mRNA-1:cds;Parent=Msa0894140-mRNA-1
chr6_1 CDS 79398826 79399198 79398826 ID=Msa0894140-mRNA-1:cds;Parent=Msa0894140-mRNA-1
chr6_1 CDS 79399313 79399531 79399313 ID=Msa0894140-mRNA-1:cds;Parent=Msa0894140-mRNA-1
chr6_1 CDS 79399805 79399943 79399805 ID=Msa0894140-mRNA-1:cds;Parent=Msa0894140-mRNA-1
chr6_1 CDS 79400682 79400930 79400682 ID=Msa0894140-mRNA-1:cds;Parent=Msa0894140-mRNA-1
chr6_1 CDS 79401051 79401344 79401051 ID=Msa0894140-mRNA-1:cds;Parent=Msa0894140-mRNA-1
Gene Sequence

>Msa0894140

ATGTCTTCGGTAGATTACTTCAATCCTAATGAGAAATCGGTTTTGCAAAGAAATGTTGCAGATTTCCACCCTAGCGTTTGGGGAGATTTTTTCATTCAGTATGCTTCAGAATCTATGGAACCTGATATGAATATTGCGGCACAAATTGATAAACTAAAAAAGGAGGTTAGACAAATGCTTGTCTTAAAAACAGAGAAACCCTTGGGAAAAGTCAACTTGATTGACTCGATATGTCGTTTGGGTGTGAGCTATCACTTTGAAGAAGAAATTAGTCAAGTTTTGGAACATATTTACAAGAGTTATGTTCAAAATGGAGAAATAACTCTCAAAGACAACCTTCATTCTCTTGCTGTGCTATTTAGGGTGTTGAGGCAACATGGACTTTACGTTTCACCTGACGTGTTCAACCAATTCAAGGACGAGCAAGGAAATTTCAGTGAAACATTGGTCGTAGATGTTGAGGGCATGTTAAACTTGTATGAAGCCTCACATATGATGGTTCATGGTGAAAATATTTTGGAAGAGGCTTTGGCTTTTACTTCTGGTCACCTTCAGTCCATGGCCACCCGATTGAGTCCTTCTCTTGCAACAAAAGTAAAACAAAGCTTAAGACAATCTCTGCGCAAAAACTTGCCTAGGCTAGTGGCAAGAAGTTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTACTTGCATTGGCAAAATTGGATTTTAATATGCTCCAAAGCCTACATCAAAAAGAATTTGGAAATATTAGCAAGTGGTGGAAGGAGTTGGATATTGCACAAAAACTACCTTATGCACGAGATAGAGTAGTAGAATGTTGCTTTTGGGTTATGACCGTATATTTTGAGCCCCAATATTCTCAAGCAAGGAAAATGATGTCAAAATTTATCTCCATTTTATCATACATTGATGACACATATGATGCATATGGAACTATTGATGAATTAGAACTTTTTACAAAGGCCATTGAAAGGTGGGATATTAATTGCTTGGAGGATCTTCCGGATTACACGAAGTTGCTTTATAAATCACTCTTGGATGTTTATGAAGAAATAGAGCAAGAAATGAAGAAAGAAGGAAGAGAATACACCCTTGACCCCTTCTTAAAAGAATTCAAAAATATAATCCAAGCTTATATGAGTGAGGCCAGATGGTTGAATGCTAACTATACACCAACAACAGCGGAGTACATGCACATATCAACAATATCAAGTGGTTACCCAGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCAACAAAAGACATCTTTGATTGGGTAACTAACAATCCAAAAATTGTTAATGCTGCTGCAATTCATTGCAGACTTAGGGATGAAATTGTGTCTAGCGAGTTTGAGCAGAAAAGAGAGCATGTTTCTTCGTACTTGGAATGTTATATGAGGGAATATGATATGAATAGGGAAGCTGCTATTCAAGAATGCCAAAAGGAAATAGACAATGCTTGGAAAGATATAAATCAGGAATGTCTAAAACCAACTGAAGTTCCGTTACCTATTCTGACGTGTGTTCTCAATCTCTCGCGTTTTATTGAGGTTTTTTACAAAGATACAGATAACTACACACACTCTGACGGACTAATGAAGACATATATTAATGATTTGCTTGTCAATCCCGTGGAAATTTGA
Protein sequence

>Msa0894140

MSSVDYFNPNEKSVLQRNVADFHPSVWGDFFIQYASESMEPDMNIAAQIDKLKKEVRQMLVLKTEKPLGKVNLIDSICRLGVSYHFEEEISQVLEHIYKSYVQNGEITLKDNLHSLAVLFRVLRQHGLYVSPDVFNQFKDEQGNFSETLVVDVEGMLNLYEASHMMVHGENILEEALAFTSGHLQSMATRLSPSLATKVKQSLRQSLRKNLPRLVARSYISIYEQDSSHNEILLALAKLDFNMLQSLHQKEFGNISKWWKELDIAQKLPYARDRVVECCFWVMTVYFEPQYSQARKMMSKFISILSYIDDTYDAYGTIDELELFTKAIERWDINCLEDLPDYTKLLYKSLLDVYEEIEQEMKKEGREYTLDPFLKEFKNIIQAYMSEARWLNANYTPTTAEYMHISTISSGYPVLATTSYIGMGNIATKDIFDWVTNNPKIVNAAAIHCRLRDEIVSSEFEQKREHVSSYLECYMREYDMNREAAIQECQKEIDNAWKDINQECLKPTEVPLPILTCVLNLSRFIEVFYKDTDNYTHSDGLMKTYINDLLVNPVEI*