AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0894130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0894130 MtrunA17_Chr7g0237001 68.579 401 126 0 1 401 153 553 0.0 592
Msa0894130 MtrunA17_Chr7g0237041 68.579 401 126 0 1 401 153 553 0.0 592
Msa0894130 MtrunA17_Chr7g0237011 68.579 401 126 0 1 401 98 498 0.0 592
Msa0894130 MtrunA17_Chr7g0236991 68.579 401 126 0 1 401 153 553 0.0 592
Msa0894130 MtrunA17_Chr7g0237081 68.579 401 126 0 1 401 153 553 0.0 592
Msa0894130 MtrunA17_Chr7g0237051 68.579 401 126 0 1 401 153 553 0.0 592
Msa0894130 MtrunA17_Chr7g0236961 68.579 401 126 0 1 401 98 498 0.0 591
Msa0894130 MtrunA17_Chr7g0236971 68.329 401 127 0 1 401 1 401 0.0 590
Msa0894130 MtrunA17_Chr5g0425371 68.579 401 126 0 1 401 153 553 0.0 586
Msa0894130 MtrunA17_Chr6g0465911 68.329 401 127 0 1 401 153 553 0.0 582
Msa0894130 MtrunA17_Chr6g0465851 68.329 401 127 0 1 401 118 518 0.0 582
Msa0894130 MtrunA17_Chr6g0466051 68.329 401 127 0 1 401 153 553 0.0 581
Msa0894130 MtrunA17_Chr6g0465441 68.080 401 128 0 1 401 153 553 0.0 580
Msa0894130 MtrunA17_Chr3g0082691 66.584 401 134 0 1 401 153 553 0.0 579
Msa0894130 MtrunA17_Chr4g0024691 68.329 401 127 0 1 401 161 561 0.0 572
Msa0894130 MtrunA17_Chr3g0105071 65.835 401 137 0 1 401 157 557 0.0 567
Msa0894130 MtrunA17_Chr6g0451711 65.337 401 139 0 1 401 157 557 0.0 559
Msa0894130 MtrunA17_Chr5g0431651 65.337 401 139 0 1 401 152 552 0.0 556
Msa0894130 MtrunA17_Chr5g0431571 65.835 401 137 0 1 401 149 549 0.0 550
Msa0894130 MtrunA17_Chr4g0042111 58.853 401 165 0 1 401 162 562 9.02e-179 509
Msa0894130 MtrunA17_Chr8g0336181 45.320 406 215 5 1 401 153 556 7.56e-128 379
Msa0894130 MtrunA17_Chr2g0319051 43.564 404 223 5 1 401 113 514 2.52e-125 372
Msa0894130 MtrunA17_Chr2g0319041 45.432 405 215 6 1 401 155 557 1.04e-124 371
Msa0894130 MtrunA17_Chr6g0466031 63.846 260 94 0 142 401 1 260 2.82e-120 349
Msa0894130 MtrunA17_Chr6g0465931 72.851 221 60 0 1 221 118 338 1.81e-114 337
Msa0894130 MtrunA17_Chr6g0466111 72.851 221 60 0 1 221 118 338 2.54e-114 337
Msa0894130 MtrunA17_Chr7g0237031 71.759 216 61 0 1 216 98 313 3.65e-114 336
Msa0894130 MtrunA17_Chr7g0236951 71.759 216 61 0 1 216 98 313 3.94e-114 336
Msa0894130 MtrunA17_Chr6g0465981 72.851 221 60 0 1 221 153 373 1.17e-113 337
Msa0894130 MtrunA17_Chr6g0465871 72.851 221 60 0 1 221 153 373 1.17e-113 337
Msa0894130 MtrunA17_Chr6g0466081 72.851 221 60 0 1 221 153 373 1.17e-113 337
Msa0894130 MtrunA17_Chr5g0445511 65.385 234 81 0 1 234 6 239 4.69e-112 328
Msa0894130 MtrunA17_Chr7g0237061 60.769 260 79 2 142 401 1 237 1.56e-107 316
Msa0894130 MtrunA17_Chr7g0237021 66.860 172 57 0 230 401 1 172 7.41e-83 251
Msa0894130 MtrunA17_Chr7g0236941 66.860 172 57 0 230 401 1 172 7.41e-83 251
Msa0894130 MtrunA17_Chr2g0319071 34.577 402 220 8 1 399 126 487 2.66e-82 260
Msa0894130 MtrunA17_Chr4g0023911 34.500 400 261 1 1 399 180 579 1.32e-80 258
Msa0894130 MtrunA17_Chr2g0323151 35.000 380 245 2 1 379 82 460 3.02e-79 252
Msa0894130 MtrunA17_Chr4g0008621 46.304 257 136 2 1 255 162 418 3.14e-79 251
Msa0894130 MtrunA17_Chr6g0465941 62.791 172 64 0 230 401 1 172 3.95e-77 236
Msa0894130 MtrunA17_Chr6g0466121 62.791 172 64 0 230 401 1 172 3.95e-77 236
Msa0894130 MtrunA17_Chr6g0465991 62.791 172 64 0 230 401 1 172 3.95e-77 236
Msa0894130 MtrunA17_Chr6g0466091 62.791 172 64 0 230 401 1 172 3.95e-77 236
Msa0894130 MtrunA17_Chr5g0445501 62.209 172 65 0 230 401 1 172 7.02e-77 235
Msa0894130 MtrunA17_Chr6g0465881 62.209 172 65 0 230 401 1 172 2.21e-76 234
Msa0894130 MtrunA17_Chr2g0319081 39.450 327 176 8 78 401 120 427 5.54e-76 242
Msa0894130 MtrunA17_Chr2g0323131 34.031 382 247 4 1 379 166 545 5.41e-75 243
Msa0894130 MtrunA17_Chr2g0310331 33.582 402 261 5 1 399 186 584 1.33e-69 229
Msa0894130 MtrunA17_Chr7g0236921 62.025 158 56 1 248 401 1 158 6.13e-68 212
Msa0894130 MtrunA17_Chr4g0048921 33.251 403 262 4 1 399 170 569 7.09e-66 219
Msa0894130 MtrunA17_Chr2g0310401 32.754 403 264 6 1 399 31 430 3.43e-64 211
Msa0894130 MtrunA17_Chr8g0357411 31.671 401 271 3 1 399 188 587 6.13e-63 212
Msa0894130 MtrunA17_Chr7g0236931 59.091 154 60 1 248 401 1 151 2.73e-62 197
Msa0894130 MtrunA17_Chr4g0048911 28.321 399 274 5 1 393 164 556 1.64e-55 192
Msa0894130 MtrunA17_Chr7g0233861 63.704 135 40 1 41 175 33 158 1.16e-53 176
Msa0894130 MtrunA17_Chr6g0477121 28.272 382 263 6 1 374 33 411 1.98e-50 175
Msa0894130 MtrunA17_Chr3g0108941 26.933 401 284 7 1 395 116 513 4.29e-48 171
Msa0894130 MtrunA17_Chr6g0477111 27.551 392 273 6 1 384 90 478 5.29e-48 170
Msa0894130 MtrunA17_Chr3g0105691 27.344 384 274 4 1 379 148 531 2.11e-47 169
Msa0894130 MtrunA17_Chr3g0109031 27.749 382 265 6 1 374 115 493 3.16e-47 169
Msa0894130 MtrunA17_Chr3g0109021 27.749 382 265 6 1 374 115 493 5.39e-47 168
Msa0894130 MtrunA17_Chr3g0099031 28.180 401 279 7 1 395 115 512 1.54e-46 167
Msa0894130 MtrunA17_Chr3g0108971 27.368 380 269 6 1 374 90 468 2.94e-46 166
Msa0894130 MtrunA17_Chr3g0108991 27.368 380 269 6 1 374 115 493 4.23e-46 166
Msa0894130 MtrunA17_Chr3g0108951 27.368 380 269 6 1 374 115 493 4.23e-46 166
Msa0894130 MtrunA17_Chr2g0280581 26.420 405 280 6 1 392 119 518 5.43e-46 165
Msa0894130 MtrunA17_Chr3g0108981 27.034 381 269 4 1 374 91 469 5.48e-46 165
Msa0894130 MtrunA17_Chr3g0108961 27.034 381 269 4 1 374 91 469 5.48e-46 165
Msa0894130 MtrunA17_Chr3g0109001 26.963 382 268 6 1 374 116 494 2.10e-45 164
Msa0894130 MtrunA17_Chr3g0109011 26.963 382 268 6 1 374 90 468 2.41e-45 163
Msa0894130 MtrunA17_Chr7g0217361 31.333 300 205 1 100 398 8 307 2.68e-45 158
Msa0894130 MtrunA17_Chr7g0237071 66.667 105 35 0 1 105 98 202 9.05e-42 147
Msa0894130 MtrunA17_Chr5g0445401 68.421 95 26 2 11 102 1 94 1.67e-34 123
Msa0894130 MtrunA17_Chr8g0357231 29.457 258 180 2 143 399 1 257 2.89e-34 127
Msa0894130 MtrunA17_Chr3g0082711 50.000 116 41 1 286 401 1 99 2.26e-33 120
Msa0894130 MtrunA17_Chr3g0101681 22.989 435 283 14 1 399 362 780 3.28e-20 93.2
Msa0894130 MtrunA17_Chr2g0281651 23.948 309 222 8 78 380 43 344 2.33e-19 89.4
Msa0894130 MtrunA17_Chr2g0310121 21.789 436 287 14 1 399 361 779 3.49e-18 86.7
Msa0894130 MtrunA17_Chr6g0466021 71.429 49 14 0 1 49 153 201 3.14e-14 71.2
Msa0894130 MtrunA17_Chr4g0008631 37.349 83 50 2 320 401 1 82 1.62e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0894130 AT5G23960.2 40.399 401 238 1 1 401 146 545 3.99e-113 342
Msa0894130 AT5G23960.1 40.347 404 236 3 1 401 146 547 4.60e-112 339
Msa0894130 AT1G70080.1 37.592 407 248 3 1 401 205 611 2.65e-96 300
Msa0894130 AT3G14490.1 38.177 406 245 3 1 401 197 601 4.25e-95 297
Msa0894130 AT1G31950.3 36.700 406 252 2 1 401 202 607 3.04e-91 287
Msa0894130 AT1G31950.1 36.700 406 252 2 1 401 201 606 3.52e-91 287
Msa0894130 AT3G14520.1 35.714 406 256 2 1 401 199 604 2.47e-90 285
Msa0894130 AT4G20210.1 35.062 405 259 3 1 401 196 600 8.85e-89 280
Msa0894130 AT3G14540.1 36.453 406 253 2 1 401 196 601 2.38e-88 279
Msa0894130 AT3G29410.2 35.484 403 258 2 1 401 96 498 5.14e-88 275
Msa0894130 AT3G29410.1 35.484 403 258 2 1 401 201 603 1.30e-86 275
Msa0894130 AT4G20200.1 34.815 405 260 3 1 401 200 604 5.77e-86 273
Msa0894130 AT1G33750.1 34.243 403 262 2 1 401 202 603 7.02e-85 270
Msa0894130 AT5G44630.1 35.236 403 257 3 1 399 153 555 7.90e-85 269
Msa0894130 AT3G32030.1 33.333 405 266 3 1 401 200 604 1.41e-84 270
Msa0894130 AT4G13300.1 34.568 405 261 3 1 401 150 554 4.36e-84 267
Msa0894130 AT4G13280.2 34.074 405 263 3 1 401 150 554 8.18e-84 266
Msa0894130 AT5G48110.1 37.026 343 211 5 60 401 1 339 2.97e-83 258
Msa0894130 AT3G29190.1 33.333 405 266 3 1 401 197 601 2.07e-82 264
Msa0894130 AT4G15870.1 33.498 406 252 5 1 401 206 598 2.51e-78 253
Msa0894130 AT2G23230.2 34.500 400 258 4 1 396 196 595 2.87e-77 251
Msa0894130 AT4G20230.2 33.085 402 264 4 1 397 212 613 1.18e-75 246
Msa0894130 AT4G20230.1 33.085 402 264 4 1 397 200 601 1.37e-75 246
Msa0894130 AT3G29110.1 34.491 403 260 4 1 399 193 595 1.95e-75 245
Msa0894130 AT1G66020.1 33.333 405 266 3 1 401 194 598 5.00e-75 244
Msa0894130 AT2G23230.1 34.250 400 254 5 1 396 196 590 1.16e-74 244
Msa0894130 AT1G31950.2 39.286 308 183 1 1 304 202 509 4.31e-74 240
Msa0894130 AT3G14540.2 38.782 312 187 1 1 308 196 507 1.77e-72 235
Msa0894130 AT4G13280.1 32.346 405 240 4 1 401 150 524 2.26e-72 236
Msa0894130 AT1G48800.1 31.762 403 268 5 1 397 201 602 4.21e-69 229
Msa0894130 AT1G48820.1 31.250 400 252 6 1 394 175 557 3.93e-65 218
Msa0894130 AT4G16730.2 29.639 415 275 6 1 401 82 493 5.02e-64 213
Msa0894130 AT4G16730.1 29.639 415 275 6 1 401 128 539 1.51e-63 213
Msa0894130 AT1G61680.2 30.982 397 267 3 1 391 167 562 5.55e-62 209
Msa0894130 AT1G61680.1 30.982 397 267 3 1 391 174 569 6.43e-62 209
Msa0894130 AT4G16740.1 30.882 408 270 7 1 401 162 564 2.93e-60 205
Msa0894130 AT3G25810.1 28.641 412 283 5 1 401 186 597 7.16e-57 196
Msa0894130 AT2G24210.1 29.469 414 278 8 1 401 178 590 1.22e-55 193
Msa0894130 AT3G25820.1 28.883 412 280 8 1 401 185 594 8.36e-54 188
Msa0894130 AT3G25830.1 28.883 412 280 8 1 401 185 594 8.36e-54 188
Msa0894130 AT1G66020.2 38.158 228 137 3 1 224 194 421 4.77e-46 164
Msa0894130 AT4G16740.2 35.498 231 143 2 1 226 162 391 3.23e-43 155
Msa0894130 AT3G25820.2 31.381 239 158 4 1 234 185 422 7.09e-37 139
Msa0894130 AT4G16740.4 36.111 180 110 1 1 175 162 341 4.68e-33 127
Msa0894130 AT4G16740.3 36.111 180 110 1 1 175 162 341 4.68e-33 127
Msa0894130 AT3G25820.4 32.402 179 117 2 1 175 185 363 1.03e-29 119
Msa0894130 AT3G25820.3 32.402 179 117 2 1 175 185 363 1.03e-29 119
Msa0894130 AT1G79460.1 24.776 335 230 12 78 401 456 779 1.07e-20 94.7
Msa0894130 AT1G61120.1 20.874 412 309 6 1 401 379 784 5.78e-16 80.5

Find 65 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCTTGCATTGGCAAAAT+TGG 0.128709 6_1:-79393293 Msa0894130:CDS
GGTTCATGGTGAAAATATTT+TGG 0.219650 6_1:-79393491 Msa0894130:CDS
TTTCCTTGCTTGAGAATATT+GGG 0.241792 6_1:+79393008 None:intergenic
ATGCAAGCAGAATTTCATTA+TGG 0.262272 6_1:+79393305 None:intergenic
GTCATCAATGTATGATAAAA+TGG 0.310334 6_1:+79392966 None:intergenic
TAATTGCTTGGAGGATCTTC+CGG 0.335446 6_1:-79392602 Msa0894130:CDS
CTGCTATTCATTGCAGACTT+AGG 0.335573 6_1:-79391543 Msa0894130:CDS
TGAGGGAATATGATATGAAT+AGG 0.340079 6_1:-79391341 Msa0894130:CDS
AGAACATGTTTCTTCGTACT+TGG 0.367446 6_1:-79391373 Msa0894130:CDS
TGCATGTACTCCTCTGTTGT+TGG 0.387478 6_1:+79391688 None:intergenic
CGTACTTGGAATGTTATATG+AGG 0.388936 6_1:-79391359 Msa0894130:CDS
GGATGAATCTTGCTCATAGA+TGG 0.390050 6_1:+79393327 None:intergenic
CAACAAAAGACATCTTTGAT+TGG 0.390973 6_1:-79391597 Msa0894130:CDS
TGCAAGCAGAATTTCATTAT+GGG 0.402529 6_1:+79393306 None:intergenic
TAAAGCAACTTCGTGTAATC+CGG 0.404734 6_1:+79392583 None:intergenic
GTTGCTTTATAAATCACTCT+TGG 0.404999 6_1:-79392569 Msa0894130:CDS
TGCTATTCATTGCAGACTTA+GGG 0.421274 6_1:-79391542 Msa0894130:CDS
AACAAAAGACATCTTTGATT+GGG 0.428042 6_1:-79391596 Msa0894130:CDS
AAAAGAAAATTGACAACGCT+TGG 0.444020 6_1:-79391296 Msa0894130:CDS
TAGGTGGGATATTAATTGCT+TGG 0.452782 6_1:-79392614 Msa0894130:CDS
TACGACTTCTTACATTGGAA+TGG 0.454510 6_1:-79391629 Msa0894130:CDS
ACGACTTCTTACATTGGAAT+GGG 0.460983 6_1:-79391628 Msa0894130:CDS
ATAGTTAGCATTCAGCCATC+TGG 0.462183 6_1:+79391714 None:intergenic
CGCTTGGAAAGATATGAATC+AGG 0.464886 6_1:-79391280 Msa0894130:CDS
TTCTGGTCACCTTCAGTCCA+TGG 0.466911 6_1:-79393449 Msa0894130:CDS
GATGACACATATGATGCATA+TGG 0.467097 6_1:-79392949 Msa0894130:CDS
GAGCAAGAAATGAAGAAAGA+AGG 0.470516 6_1:-79392529 Msa0894130:CDS
GAGGGAATATGATATGAATA+GGG 0.475500 6_1:-79391340 Msa0894130:CDS
AACAATATCAAGTGGTTACC+TGG 0.478034 6_1:-79391659 Msa0894130:CDS
TTGCAAGAGAAGGACTCAAT+CGG 0.484754 6_1:+79393422 None:intergenic
ATATTGGGGCTCAAAATATA+CGG 0.495144 6_1:+79393023 None:intergenic
TAATGAAATTCTGCTTGCAT+TGG 0.496026 6_1:-79393302 Msa0894130:CDS
TTGAGAACACACGTCAGAAT+AGG 0.502783 6_1:+79391228 None:intergenic
ATATAGGTGGTGGAAGGAGT+TGG 0.505587 6_1:-79393109 Msa0894130:intron
AATAAATACTCAAATTTCCA+CGG 0.507679 6_1:+79391107 None:intergenic
AGGACTCAATCGGGTGGCCA+TGG 0.512884 6_1:+79393432 None:intergenic
TAACTTCTTGCCACTAGCCT+AGG 0.521919 6_1:+79393355 None:intergenic
GCCTCACATATGATGGTTCA+TGG 0.522278 6_1:-79393505 Msa0894130:CDS
ATGATGTGCTAACCTTTCAA+TGG 0.523871 6_1:+79392894 None:intergenic
GTGGGATATTAATTGCTTGG+AGG 0.529634 6_1:-79392611 Msa0894130:CDS
TGGCCTCACTCATATAAGCT+TGG 0.531321 6_1:+79391734 None:intergenic
TTCCTTGCTTGAGAATATTG+GGG 0.534381 6_1:+79393009 None:intergenic
TGCAAGAGAAGGACTCAATC+GGG 0.546913 6_1:+79393423 None:intergenic
AGCCCCAATATTCTCAAGCA+AGG 0.547455 6_1:-79393011 Msa0894130:CDS
CTTATATGAGTGAGGCCAGA+TGG 0.549142 6_1:-79391729 Msa0894130:CDS
ATCAAGTGGTTACCTGGTGT+TGG 0.550978 6_1:-79391653 Msa0894130:CDS
ATAAATACTCAAATTTCCAC+GGG 0.552703 6_1:+79391108 None:intergenic
TTTACTTGTGTTGCAAGAGA+AGG 0.558925 6_1:+79393412 None:intergenic
ATCGGGTGGCCATGGACTGA+AGG 0.566605 6_1:+79393440 None:intergenic
ATAGGTAACGGAACTTCAGT+TGG 0.566914 6_1:+79391246 None:intergenic
GTACTTGGAATGTTATATGA+GGG 0.567173 6_1:-79391358 Msa0894130:CDS
CTTTGTATATAGGTGGTGGA+AGG 0.567617 6_1:-79393115 Msa0894130:intron
GTATGAAGCCTCACATATGA+TGG 0.567934 6_1:-79393512 Msa0894130:CDS
TTGGCTACGACTTCTTACAT+TGG 0.575246 6_1:-79391634 Msa0894130:CDS
GGATGAAATTGTTTCTAGCG+AGG 0.588764 6_1:-79391521 Msa0894130:intron
ACTACTCTATCTCGTGCATA+CGG 0.590301 6_1:+79393069 None:intergenic
CACATATCAACAATATCAAG+TGG 0.594145 6_1:-79391667 Msa0894130:CDS
AAGAAGTCGTAGCCAACACC+AGG 0.598589 6_1:+79391641 None:intergenic
TGATTTGCTTGTCAATCCCG+TGG 0.603076 6_1:-79391124 Msa0894130:CDS
GATAACTACACACACTCTGA+CGG 0.610210 6_1:-79391168 Msa0894130:CDS
ACCATGAACCATCATATGTG+AGG 0.634158 6_1:+79393504 None:intergenic
AATCCAAGCTTATATGAGTG+AGG 0.644710 6_1:-79391737 Msa0894130:CDS
ACACACGTCAGAATAGGTAA+CGG 0.688917 6_1:+79391234 None:intergenic
AAGAGAAGGACTCAATCGGG+TGG 0.695745 6_1:+79393426 None:intergenic
TAACTATACACCAACAACAG+AGG 0.707977 6_1:-79391698 Msa0894130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATAATTTATTCAACAA+TGG - chr6_1:79392221-79392240 Msa0894130:intron 10.0%
!!! ATTTCATTTTAAATTTTGTA+TGG - chr6_1:79392251-79392270 Msa0894130:intron 10.0%
!!! AAATATTTTTACATCATTTT+AGG - chr6_1:79392352-79392371 Msa0894130:intron 10.0%
!!! TTATAATGATATATTTTTCT+TGG + chr6_1:79392413-79392432 None:intergenic 10.0%
!!! TATTTTTTGTCTTTGTATAT+AGG - chr6_1:79391514-79391533 Msa0894130:intron 15.0%
!! GATTAAAGATAAATTTCATA+TGG + chr6_1:79391824-79391843 None:intergenic 15.0%
!! TCATTATAAAGTTATTTGAT+TGG - chr6_1:79392424-79392443 Msa0894130:intron 15.0%
!! CTATCAAAGAATAAAAATTA+AGG - chr6_1:79392625-79392644 Msa0894130:intron 15.0%
!! TTAACATCATTTAATTACAT+AGG - chr6_1:79392814-79392833 Msa0894130:intron 15.0%
!!! TTTAATTACATAGGTTTTTT+TGG - chr6_1:79392823-79392842 Msa0894130:intron 15.0%
!!! ATTTTGTTTTAAATTAGGCA+GGG + chr6_1:79391442-79391461 None:intergenic 20.0%
!!! TATTTTGTTTTAAATTAGGC+AGG + chr6_1:79391443-79391462 None:intergenic 20.0%
!! ACAAAGACAAAAAATAGTAT+AGG + chr6_1:79391510-79391529 None:intergenic 20.0%
!!! TGAATTAGAACTTTTTACAA+AGG - chr6_1:79391722-79391741 Msa0894130:CDS 20.0%
!!! TTGCAATCAAAATGATTTTT+AGG - chr6_1:79392006-79392025 Msa0894130:intron 20.0%
!!! AATCAAAATGATTTTTAGGT+GGG - chr6_1:79392010-79392029 Msa0894130:intron 20.0%
!!! AATTTTGTATGGTTATCAAA+TGG - chr6_1:79392262-79392281 Msa0894130:intron 20.0%
!! TCGTAAAATTAAGATTACAA+AGG + chr6_1:79392731-79392750 None:intergenic 20.0%
!! ATTCTTTTTGATGTAGGTTT+TGG + chr6_1:79391385-79391404 None:intergenic 25.0%
! AACCTACATCAAAAAGAATT+TGG - chr6_1:79391386-79391405 Msa0894130:CDS 25.0%
!! TTCCAAATTCTTTTTGATGT+AGG + chr6_1:79391391-79391410 None:intergenic 25.0%
!! TTTTTGTCTTTGTATATAGG+TGG - chr6_1:79391517-79391536 Msa0894130:intron 25.0%
!!! AGTAGTAGAATGTTGTTTTT+GGG - chr6_1:79391587-79391606 Msa0894130:CDS 25.0%
! GTCATCAATGTATGATAAAA+TGG + chr6_1:79391676-79391695 None:intergenic 25.0%
!!! ATGGTTTTAACTCTAAAGTT+TGG + chr6_1:79391805-79391824 None:intergenic 25.0%
!!! CAATCAAAATGATTTTTAGG+TGG - chr6_1:79392009-79392028 Msa0894130:intron 25.0%
!!! ACTCTTACTTCTTTTAAGAA+GGG + chr6_1:79392155-79392174 None:intergenic 25.0%
!!! AACTCTTACTTCTTTTAAGA+AGG + chr6_1:79392156-79392175 None:intergenic 25.0%
! TATCCATTGTTATATGAACT+TGG - chr6_1:79392505-79392524 Msa0894130:CDS 25.0%
! AAGAAAAATGTATCATCATG+AGG - chr6_1:79392567-79392586 Msa0894130:CDS 25.0%
! AGGTAAAAACTTAATATCCT+TGG - chr6_1:79392645-79392664 Msa0894130:intron 25.0%
!! TTTCTTGATAGTTTAATCAG+TGG - chr6_1:79392757-79392776 Msa0894130:intron 25.0%
! AACAAAAGACATCTTTGATT+GGG - chr6_1:79393043-79393062 Msa0894130:CDS 25.0%
! GGTTCATGGTGAAAATATTT+TGG - chr6_1:79391148-79391167 Msa0894130:CDS 30.0%
!! TGGTGAAAATATTTTGGAAG+AGG - chr6_1:79391154-79391173 Msa0894130:CDS 30.0%
!! AAATATTTTGGAAGAGGCTT+TGG - chr6_1:79391160-79391179 Msa0894130:CDS 30.0%
TGCAAGCAGAATTTCATTAT+GGG + chr6_1:79391336-79391355 None:intergenic 30.0%
ATGCAAGCAGAATTTCATTA+TGG + chr6_1:79391337-79391356 None:intergenic 30.0%
TAATGAAATTCTGCTTGCAT+TGG - chr6_1:79391337-79391356 Msa0894130:CDS 30.0%
!!! GAGTAGTAGAATGTTGTTTT+TGG - chr6_1:79391586-79391605 Msa0894130:CDS 30.0%
ATATTGGGGCTCAAAATATA+CGG + chr6_1:79391619-79391638 None:intergenic 30.0%
TTTCCTTGCTTGAGAATATT+GGG + chr6_1:79391634-79391653 None:intergenic 30.0%
! TTTTCCTTGCTTGAGAATAT+TGG + chr6_1:79391635-79391654 None:intergenic 30.0%
! TTTTTACAAAGGCCATTGAA+AGG - chr6_1:79391733-79391752 Msa0894130:CDS 30.0%
CTAGTCATCAAGTTTAGATT+TGG - chr6_1:79391843-79391862 Msa0894130:intron 30.0%
AATTTATCCATCTCCAATCT+TGG - chr6_1:79391887-79391906 Msa0894130:intron 30.0%
ATTGAATTAGCAACCAAGAT+TGG + chr6_1:79391903-79391922 None:intergenic 30.0%
! GTTGCTTTATAAATCACTCT+TGG - chr6_1:79392070-79392089 Msa0894130:intron 30.0%
!! CTCTTACTTCTTTTAAGAAG+GGG + chr6_1:79392154-79392173 None:intergenic 30.0%
GAACCAAGTTCATATAACAA+TGG + chr6_1:79392511-79392530 None:intergenic 30.0%
CACATATCAACAATATCAAG+TGG - chr6_1:79392972-79392991 Msa0894130:CDS 30.0%
CAACAAAAGACATCTTTGAT+TGG - chr6_1:79393042-79393061 Msa0894130:CDS 30.0%
GTACTTGGAATGTTATATGA+GGG - chr6_1:79393281-79393300 Msa0894130:CDS 30.0%
TGAGGGAATATGATATGAAT+AGG - chr6_1:79393298-79393317 Msa0894130:CDS 30.0%
GAGGGAATATGATATGAATA+GGG - chr6_1:79393299-79393318 Msa0894130:CDS 30.0%
!! AAGCGTTGTCAATTTTCTTT+TGG + chr6_1:79393344-79393363 None:intergenic 30.0%
AAAAGAAAATTGACAACGCT+TGG - chr6_1:79393343-79393362 Msa0894130:CDS 30.0%
TTTACTTGTGTTGCAAGAGA+AGG + chr6_1:79391230-79391249 None:intergenic 35.0%
TTGTCTTTGTATATAGGTGG+TGG - chr6_1:79391520-79391539 Msa0894130:intron 35.0%
TTCCTTGCTTGAGAATATTG+GGG + chr6_1:79391633-79391652 None:intergenic 35.0%
GATGACACATATGATGCATA+TGG - chr6_1:79391690-79391709 Msa0894130:CDS 35.0%
ATGATGTGCTAACCTTTCAA+TGG + chr6_1:79391748-79391767 None:intergenic 35.0%
TAGGTGGGATATTAATTGCT+TGG - chr6_1:79392025-79392044 Msa0894130:intron 35.0%
TAAAGCAACTTCGTGTAATC+CGG + chr6_1:79392059-79392078 None:intergenic 35.0%
GAGCAAGAAATGAAGAAAGA+AGG - chr6_1:79392110-79392129 Msa0894130:intron 35.0%
!! TTCTTTTAAGAAGGGGTCAA+GGG + chr6_1:79392147-79392166 None:intergenic 35.0%
TGGTTATCAAATGGACGTTT+AGG - chr6_1:79392271-79392290 Msa0894130:intron 35.0%
! TTTTCTTGGTCAAGTTATCG+TGG + chr6_1:79392399-79392418 None:intergenic 35.0%
GAACTGAGTTCATATAACCA+AGG + chr6_1:79392665-79392684 None:intergenic 35.0%
AATCCAAGCTTATATGAGTG+AGG - chr6_1:79392902-79392921 Msa0894130:intron 35.0%
TAACTATACACCAACAACAG+AGG - chr6_1:79392941-79392960 Msa0894130:CDS 35.0%
AACAATATCAAGTGGTTACC+TGG - chr6_1:79392980-79392999 Msa0894130:CDS 35.0%
TACGACTTCTTACATTGGAA+TGG - chr6_1:79393010-79393029 Msa0894130:CDS 35.0%
ACGACTTCTTACATTGGAAT+GGG - chr6_1:79393011-79393030 Msa0894130:CDS 35.0%
! GCAGCAGCATTAACAATTTT+TGG + chr6_1:79393080-79393099 None:intergenic 35.0%
TGCTATTCATTGCAGACTTA+GGG - chr6_1:79393097-79393116 Msa0894130:CDS 35.0%
AGAACATGTTTCTTCGTACT+TGG - chr6_1:79393266-79393285 Msa0894130:CDS 35.0%
CGTACTTGGAATGTTATATG+AGG - chr6_1:79393280-79393299 Msa0894130:CDS 35.0%
GTATGAAGCCTCACATATGA+TGG - chr6_1:79391127-79391146 Msa0894130:CDS 40.0%
ACCATGAACCATCATATGTG+AGG + chr6_1:79391138-79391157 None:intergenic 40.0%
TTGCAAGAGAAGGACTCAAT+CGG + chr6_1:79391220-79391239 None:intergenic 40.0%
GGATGAATCTTGCTCATAGA+TGG + chr6_1:79391315-79391334 None:intergenic 40.0%
! TCTGCTTGCATTGGCAAAAT+TGG - chr6_1:79391346-79391365 Msa0894130:CDS 40.0%
!! CTTTGTATATAGGTGGTGGA+AGG - chr6_1:79391524-79391543 Msa0894130:CDS 40.0%
ACTACTCTATCTCGTGCATA+CGG + chr6_1:79391573-79391592 None:intergenic 40.0%
TTAGCAACCAAGATTGGAGA+TGG + chr6_1:79391897-79391916 None:intergenic 40.0%
GTGGGATATTAATTGCTTGG+AGG - chr6_1:79392028-79392047 Msa0894130:intron 40.0%
TAATTGCTTGGAGGATCTTC+CGG - chr6_1:79392037-79392056 Msa0894130:intron 40.0%
!! CTTCTTTTAAGAAGGGGTCA+AGG + chr6_1:79392148-79392167 None:intergenic 40.0%
ATAGTTAGCATTCAGCCATC+TGG + chr6_1:79392928-79392947 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG - chr6_1:79393005-79393024 Msa0894130:CDS 40.0%
CTGCTATTCATTGCAGACTT+AGG - chr6_1:79393096-79393115 Msa0894130:CDS 40.0%
!! GGATGAAATTGTTTCTAGCG+AGG - chr6_1:79393118-79393137 Msa0894130:intron 40.0%
CGCTTGGAAAGATATGAATC+AGG - chr6_1:79393359-79393378 Msa0894130:CDS 40.0%
!! ATAGGTAACGGAACTTCAGT+TGG + chr6_1:79393396-79393415 None:intergenic 40.0%
ACACACGTCAGAATAGGTAA+CGG + chr6_1:79393408-79393427 None:intergenic 40.0%
TTGAGAACACACGTCAGAAT+AGG + chr6_1:79393414-79393433 None:intergenic 40.0%
!! CAATCTCTCGCGTTTTATTG+AGG - chr6_1:79393431-79393450 Msa0894130:CDS 40.0%
GATAACTACACACACTCTGA+CGG - chr6_1:79393471-79393490 Msa0894130:CDS 40.0%
GCCTCACATATGATGGTTCA+TGG - chr6_1:79391134-79391153 Msa0894130:CDS 45.0%
!!! GAGGCTTTGGCTTTTACTTC+TGG - chr6_1:79391173-79391192 Msa0894130:CDS 45.0%
TGCAAGAGAAGGACTCAATC+GGG + chr6_1:79391219-79391238 None:intergenic 45.0%
CAAAAACTTGCCTAGGCTAG+TGG - chr6_1:79391274-79391293 Msa0894130:CDS 45.0%
! TAACTTCTTGCCACTAGCCT+AGG + chr6_1:79391287-79391306 None:intergenic 45.0%
!! GTTTTAAATTAGGCAGGGCG+TGG + chr6_1:79391437-79391456 None:intergenic 45.0%
!! ATATAGGTGGTGGAAGGAGT+TGG - chr6_1:79391530-79391549 Msa0894130:CDS 45.0%
AGCCCCAATATTCTCAAGCA+AGG - chr6_1:79391628-79391647 Msa0894130:CDS 45.0%
TGGCCTCACTCATATAAGCT+TGG + chr6_1:79392908-79392927 None:intergenic 45.0%
CTTATATGAGTGAGGCCAGA+TGG - chr6_1:79392910-79392929 Msa0894130:CDS 45.0%
TGCATGTACTCCTCTGTTGT+TGG + chr6_1:79392954-79392973 None:intergenic 45.0%
ATCAAGTGGTTACCTGGTGT+TGG - chr6_1:79392986-79393005 Msa0894130:CDS 45.0%
!! TGATTTGCTTGTCAATCCCG+TGG - chr6_1:79393515-79393534 Msa0894130:CDS 45.0%
!!! TTTATATTTTGTTTTAAATT+AGG + chr6_1:79391447-79391466 None:intergenic 5.0%
!! AATATAAAATAAATGTTAAT+AGG + chr6_1:79392856-79392875 None:intergenic 5.0%
TTCTGGTCACCTTCAGTCCA+TGG - chr6_1:79391190-79391209 Msa0894130:CDS 50.0%
AAGAGAAGGACTCAATCGGG+TGG + chr6_1:79391216-79391235 None:intergenic 50.0%
CTCTGCGCAAAAACTTGCCT+AGG - chr6_1:79391267-79391286 Msa0894130:CDS 50.0%
AAGAAGTCGTAGCCAACACC+AGG + chr6_1:79393001-79393020 None:intergenic 50.0%
! ATCGGGTGGCCATGGACTGA+AGG + chr6_1:79391202-79391221 None:intergenic 60.0%
AGGACTCAATCGGGTGGCCA+TGG + chr6_1:79391210-79391229 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 79391116 79393545 79391116 ID=Msa0894130;Name=Msa0894130
chr6_1 mRNA 79391116 79393545 79391116 ID=Msa0894130-mRNA-1;Parent=Msa0894130;Name=Msa0894130-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|5|0|401
chr6_1 exon 79393241 79393545 79393241 ID=Msa0894130-mRNA-1:exon:13314;Parent=Msa0894130-mRNA-1
chr6_1 exon 79392907 79393125 79392907 ID=Msa0894130-mRNA-1:exon:13313;Parent=Msa0894130-mRNA-1
chr6_1 exon 79392495 79392633 79392495 ID=Msa0894130-mRNA-1:exon:13312;Parent=Msa0894130-mRNA-1
chr6_1 exon 79391522 79391770 79391522 ID=Msa0894130-mRNA-1:exon:13311;Parent=Msa0894130-mRNA-1
chr6_1 exon 79391116 79391409 79391116 ID=Msa0894130-mRNA-1:exon:13310;Parent=Msa0894130-mRNA-1
chr6_1 CDS 79393241 79393545 79393241 ID=Msa0894130-mRNA-1:cds;Parent=Msa0894130-mRNA-1
chr6_1 CDS 79392907 79393125 79392907 ID=Msa0894130-mRNA-1:cds;Parent=Msa0894130-mRNA-1
chr6_1 CDS 79392495 79392633 79392495 ID=Msa0894130-mRNA-1:cds;Parent=Msa0894130-mRNA-1
chr6_1 CDS 79391522 79391770 79391522 ID=Msa0894130-mRNA-1:cds;Parent=Msa0894130-mRNA-1
chr6_1 CDS 79391116 79391409 79391116 ID=Msa0894130-mRNA-1:cds;Parent=Msa0894130-mRNA-1
Gene Sequence

>Msa0894130

ATGTTAAACTTGTATGAAGCCTCACATATGATGGTTCATGGTGAAAATATTTTGGAAGAGGCTTTGGCTTTTACTTCTGGTCACCTTCAGTCCATGGCCACCCGATTGAGTCCTTCTCTTGCAACACAAGTAAAACAAAGCTTAAGACAATCTCTGCGCAAAAACTTGCCTAGGCTAGTGGCAAGAAGTTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTGCTTGCATTGGCAAAATTGGATTTTAATATGCTCCAAAACCTACATCAAAAAGAATTTGGAAATATTAGCAAGTGGTGGAAGGAGTTGGATATTGCTCAAAAACTACCGTATGCACGAGATAGAGTAGTAGAATGTTGTTTTTGGGTTATGACCGTATATTTTGAGCCCCAATATTCTCAAGCAAGGAAAATGATGTCAAAATTTATCTCCATTTTATCATACATTGATGACACATATGATGCATATGGAACTATTGATGAATTAGAACTTTTTACAAAGGCCATTGAAAGGTGGGATATTAATTGCTTGGAGGATCTTCCGGATTACACGAAGTTGCTTTATAAATCACTCTTGGATGTTTATGAAGAAATAGAGCAAGAAATGAAGAAAGAAGGAAGAGAATACACCCTTGACCCCTTCTTAAAAGAATTCAAAAATATAATCCAAGCTTATATGAGTGAGGCCAGATGGCTGAATGCTAACTATACACCAACAACAGAGGAGTACATGCACATATCAACAATATCAAGTGGTTACCTGGTGTTGGCTACGACTTCTTACATTGGAATGGGAAATATAGCAACAAAAGACATCTTTGATTGGGTAACTAACAATCCAAAAATTGTTAATGCTGCTGCTATTCATTGCAGACTTAGGGATGAAATTGTTTCTAGCGAGTTTGAGCAGAAAAGAGAACATGTTTCTTCGTACTTGGAATGTTATATGAGGGAATATGATATGAATAGGGAAGCTGCTATTCACGAATGCCAAAAGAAAATTGACAACGCTTGGAAAGATATGAATCAGGAATGTCTAAAACCAACTGAAGTTCCGTTACCTATTCTGACGTGTGTTCTCAATCTCTCGCGTTTTATTGAGGTTTTTTACAAAGATACAGATAACTACACACACTCTGACGGACTAATGAAGACATATATTAATGATTTGCTTGTCAATCCCGTGGAAATTTGA
Protein sequence

>Msa0894130

MLNLYEASHMMVHGENILEEALAFTSGHLQSMATRLSPSLATQVKQSLRQSLRKNLPRLVARSYISIYEQDSSHNEILLALAKLDFNMLQNLHQKEFGNISKWWKELDIAQKLPYARDRVVECCFWVMTVYFEPQYSQARKMMSKFISILSYIDDTYDAYGTIDELELFTKAIERWDINCLEDLPDYTKLLYKSLLDVYEEIEQEMKKEGREYTLDPFLKEFKNIIQAYMSEARWLNANYTPTTEEYMHISTISSGYLVLATTSYIGMGNIATKDIFDWVTNNPKIVNAAAIHCRLRDEIVSSEFEQKREHVSSYLECYMREYDMNREAAIHECQKKIDNAWKDMNQECLKPTEVPLPILTCVLNLSRFIEVFYKDTDNYTHSDGLMKTYINDLLVNPVEI*