Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002460 | Msa0960660 | 0.804876 | 1.750099e-49 | -8.615850e-47 |
| Msa0661650 | Msa0960660 | 0.805563 | 1.256853e-49 | -8.615850e-47 |
| Msa0903990 | Msa0960660 | 0.805633 | 1.215010e-49 | -8.615850e-47 |
| Msa0927310 | Msa0960660 | 0.800490 | 1.406793e-48 | -8.615850e-47 |
| Msa0936530 | Msa0960660 | 0.803075 | 4.144428e-49 | -8.615850e-47 |
| Msa0960640 | Msa0960660 | 0.845787 | 3.266157e-59 | -8.615850e-47 |
| Msa0960660 | Msa1392240 | 0.804532 | 2.064505e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 19 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAAGTCTGGTAAAAGTT+TGG | 0.288633 | 6_3:+80393090 | Msa0960660:CDS |
| TCCTTTGGTGTTGCCACGTT+TGG | 0.366318 | 6_3:+80393449 | Msa0960660:CDS |
| ATCAAGTCTGGTAAAAGTTT+GGG | 0.375878 | 6_3:+80393091 | Msa0960660:CDS |
| TTTGCAGCTCAGTTGTCCTT+TGG | 0.413477 | 6_3:+80393434 | Msa0960660:CDS |
| TTGTTGATGAATGCATGATT+TGG | 0.442539 | 6_3:+80395104 | Msa0960660:CDS |
| GGGTTGCTCGAAAGGGAATC+AGG | 0.442661 | 6_3:+80393400 | Msa0960660:CDS |
| AAATCCGTGGGTTGCTCGAA+AGG | 0.492503 | 6_3:+80393392 | Msa0960660:CDS |
| GGACTAGAGGCCGCGAGAGA+TGG | 0.499289 | 6_3:-80393117 | None:intergenic |
| GTATCAGAAGCAATCAAGTC+TGG | 0.502835 | 6_3:+80393079 | Msa0960660:CDS |
| AATCCGTGGGTTGCTCGAAA+GGG | 0.539199 | 6_3:+80393393 | Msa0960660:CDS |
| GTTACAGAGGGATGATTCAG+AGG | 0.567492 | 6_3:+80393057 | None:intergenic |
| ATTCCCTTTCGAGCAACCCA+CGG | 0.588631 | 6_3:-80393396 | None:intergenic |
| ACCAAACGTGGCAACACCAA+AGG | 0.612240 | 6_3:-80393450 | None:intergenic |
| GGTTCACACCACAAAATCCG+TGG | 0.628471 | 6_3:+80393379 | Msa0960660:CDS |
| TTGTCATACGAGATGTCTAG+AGG | 0.649299 | 6_3:+80393355 | Msa0960660:CDS |
| GTTTGGGAATCCATCTCTCG+CGG | 0.655388 | 6_3:+80393107 | Msa0960660:CDS |
| GTTCACACCACAAAATCCGT+GGG | 0.668254 | 6_3:+80393380 | Msa0960660:CDS |
| TGTTCAATTCATACCAAACG+TGG | 0.671046 | 6_3:-80393462 | None:intergenic |
| TCATACGAGATGTCTAGAGG+TGG | 0.691785 | 6_3:+80393358 | Msa0960660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTACACTATGAATTT+GGG | - | chr6_3:80394179-80394198 | None:intergenic | 15.0% |
| !! | AAATATAATATACATTCTTG+AGG | - | chr6_3:80394816-80394835 | None:intergenic | 15.0% |
| !! | AAATATTACACTATGAATTT+GGG | - | chr6_3:80394179-80394198 | None:intergenic | 15.0% |
| !! | AAATATAATATACATTCTTG+AGG | - | chr6_3:80394816-80394835 | None:intergenic | 15.0% |
| !! | AATGTAGAAATGTATTACTT+TGG | - | chr6_3:80393298-80393317 | None:intergenic | 20.0% |
| !!! | ATTTACATGTACTTCTAAAA+TGG | - | chr6_3:80393998-80394017 | None:intergenic | 20.0% |
| !!! | TTAGAAGTACATGTAAATTA+TGG | + | chr6_3:80394000-80394019 | Msa0960660:intron | 20.0% |
| !! | TATGTAAATATGTACTGAAA+AGG | + | chr6_3:80394055-80394074 | Msa0960660:intron | 20.0% |
| !!! | CATTTAAAACTAACAATCAT+TGG | - | chr6_3:80394119-80394138 | None:intergenic | 20.0% |
| !! | AATATTACACTATGAATTTG+GGG | - | chr6_3:80394178-80394197 | None:intergenic | 20.0% |
| !! | GAAATATTACACTATGAATT+TGG | - | chr6_3:80394180-80394199 | None:intergenic | 20.0% |
| !!! | ATCAATATTTGTTTTCCAAT+AGG | + | chr6_3:80394238-80394257 | Msa0960660:intron | 20.0% |
| !! | ATAATAACACAAGTTATAGA+AGG | - | chr6_3:80394338-80394357 | None:intergenic | 20.0% |
| !!! | GGAAAAGTTATTTTAAAACA+AGG | + | chr6_3:80394449-80394468 | Msa0960660:intron | 20.0% |
| !!! | TTATTTTAAAACAAGGAATG+AGG | + | chr6_3:80394456-80394475 | Msa0960660:intron | 20.0% |
| !!! | CTTTTAAATAAGCATATACT+TGG | + | chr6_3:80394549-80394568 | Msa0960660:intron | 20.0% |
| !! | AAAAATGTGAAATAGGAATT+TGG | - | chr6_3:80394644-80394663 | None:intergenic | 20.0% |
| !! | TCTTAATGAAAACATATTGA+GGG | + | chr6_3:80394722-80394741 | Msa0960660:intron | 20.0% |
| !! | TTCATATGTCTATTAATAGT+TGG | + | chr6_3:80394834-80394853 | Msa0960660:intron | 20.0% |
| !! | TCTATTAATAGTTGGATAAT+GGG | + | chr6_3:80394842-80394861 | Msa0960660:intron | 20.0% |
| !! | AATGTAGAAATGTATTACTT+TGG | - | chr6_3:80393298-80393317 | None:intergenic | 20.0% |
| !!! | ATTTACATGTACTTCTAAAA+TGG | - | chr6_3:80393998-80394017 | None:intergenic | 20.0% |
| !!! | TTAGAAGTACATGTAAATTA+TGG | + | chr6_3:80394000-80394019 | Msa0960660:intron | 20.0% |
| !! | TATGTAAATATGTACTGAAA+AGG | + | chr6_3:80394055-80394074 | Msa0960660:intron | 20.0% |
| !!! | CATTTAAAACTAACAATCAT+TGG | - | chr6_3:80394119-80394138 | None:intergenic | 20.0% |
| !! | AATATTACACTATGAATTTG+GGG | - | chr6_3:80394178-80394197 | None:intergenic | 20.0% |
| !! | GAAATATTACACTATGAATT+TGG | - | chr6_3:80394180-80394199 | None:intergenic | 20.0% |
| !!! | ATCAATATTTGTTTTCCAAT+AGG | + | chr6_3:80394238-80394257 | Msa0960660:intron | 20.0% |
| !! | ATAATAACACAAGTTATAGA+AGG | - | chr6_3:80394338-80394357 | None:intergenic | 20.0% |
| !!! | GGAAAAGTTATTTTAAAACA+AGG | + | chr6_3:80394449-80394468 | Msa0960660:intron | 20.0% |
| !!! | TTATTTTAAAACAAGGAATG+AGG | + | chr6_3:80394456-80394475 | Msa0960660:intron | 20.0% |
| !!! | CTTTTAAATAAGCATATACT+TGG | + | chr6_3:80394549-80394568 | Msa0960660:intron | 20.0% |
| !! | AAAAATGTGAAATAGGAATT+TGG | - | chr6_3:80394644-80394663 | None:intergenic | 20.0% |
| !! | TCTTAATGAAAACATATTGA+GGG | + | chr6_3:80394722-80394741 | Msa0960660:intron | 20.0% |
| !! | TTCATATGTCTATTAATAGT+TGG | + | chr6_3:80394834-80394853 | Msa0960660:intron | 20.0% |
| !! | TCTATTAATAGTTGGATAAT+GGG | + | chr6_3:80394842-80394861 | Msa0960660:intron | 20.0% |
| !!! | TTTTAAAATTTCTGGACTAG+AGG | - | chr6_3:80393133-80393152 | None:intergenic | 25.0% |
| !! | TCTAGTCCAGAAATTTTAAA+AGG | + | chr6_3:80393132-80393151 | Msa0960660:intron | 25.0% |
| ! | ACAACATCTAAGAAATTGAA+CGG | + | chr6_3:80393180-80393199 | Msa0960660:intron | 25.0% |
| ! | ACTTGTAACAACATTAATCT+TGG | - | chr6_3:80393208-80393227 | None:intergenic | 25.0% |
| ! | AATACATTTCTACATTTGTC+AGG | + | chr6_3:80393302-80393321 | Msa0960660:intron | 25.0% |
| ! | ATATCTGCAAGAAATTATGT+GGG | + | chr6_3:80393734-80393753 | Msa0960660:intron | 25.0% |
| ! | ACATTAAAATACATTATCCG+AGG | - | chr6_3:80394033-80394052 | None:intergenic | 25.0% |
| !! | TTGTGTTATTATTCTCTTTC+TGG | + | chr6_3:80394346-80394365 | Msa0960660:intron | 25.0% |
| ! | TTCAGATCACATCATTTAAT+CGG | - | chr6_3:80394378-80394397 | None:intergenic | 25.0% |
| !!! | TCCTATTTCACATTTTTTGA+AGG | + | chr6_3:80394647-80394666 | Msa0960660:intron | 25.0% |
| ! | ACCTTCAAAAAATGTGAAAT+AGG | - | chr6_3:80394651-80394670 | None:intergenic | 25.0% |
| ! | GTCTTAATGAAAACATATTG+AGG | + | chr6_3:80394721-80394740 | Msa0960660:intron | 25.0% |
| ! | CTTAATGAAAACATATTGAG+GGG | + | chr6_3:80394723-80394742 | Msa0960660:intron | 25.0% |
| ! | TTAATGAAAACATATTGAGG+GGG | + | chr6_3:80394724-80394743 | Msa0960660:intron | 25.0% |
| !!! | TCTATGTATTAACTTGTAGA+GGG | - | chr6_3:80394789-80394808 | None:intergenic | 25.0% |
| !!! | TTCTATGTATTAACTTGTAG+AGG | - | chr6_3:80394790-80394809 | None:intergenic | 25.0% |
| ! | GTCTATTAATAGTTGGATAA+TGG | + | chr6_3:80394841-80394860 | Msa0960660:intron | 25.0% |
| !! | TGTTTGGATCATATTTTACA+TGG | + | chr6_3:80395049-80395068 | Msa0960660:intron | 25.0% |
| !!! | TTTTAAAATTTCTGGACTAG+AGG | - | chr6_3:80393133-80393152 | None:intergenic | 25.0% |
| !! | TCTAGTCCAGAAATTTTAAA+AGG | + | chr6_3:80393132-80393151 | Msa0960660:intron | 25.0% |
| ! | ACAACATCTAAGAAATTGAA+CGG | + | chr6_3:80393180-80393199 | Msa0960660:intron | 25.0% |
| ! | ACTTGTAACAACATTAATCT+TGG | - | chr6_3:80393208-80393227 | None:intergenic | 25.0% |
| ! | AATACATTTCTACATTTGTC+AGG | + | chr6_3:80393302-80393321 | Msa0960660:intron | 25.0% |
| ! | ATATCTGCAAGAAATTATGT+GGG | + | chr6_3:80393734-80393753 | Msa0960660:intron | 25.0% |
| ! | ACATTAAAATACATTATCCG+AGG | - | chr6_3:80394033-80394052 | None:intergenic | 25.0% |
| !! | TTGTGTTATTATTCTCTTTC+TGG | + | chr6_3:80394346-80394365 | Msa0960660:intron | 25.0% |
| ! | TTCAGATCACATCATTTAAT+CGG | - | chr6_3:80394378-80394397 | None:intergenic | 25.0% |
| !!! | TCCTATTTCACATTTTTTGA+AGG | + | chr6_3:80394647-80394666 | Msa0960660:intron | 25.0% |
| ! | ACCTTCAAAAAATGTGAAAT+AGG | - | chr6_3:80394651-80394670 | None:intergenic | 25.0% |
| ! | GTCTTAATGAAAACATATTG+AGG | + | chr6_3:80394721-80394740 | Msa0960660:intron | 25.0% |
| ! | CTTAATGAAAACATATTGAG+GGG | + | chr6_3:80394723-80394742 | Msa0960660:intron | 25.0% |
| ! | TTAATGAAAACATATTGAGG+GGG | + | chr6_3:80394724-80394743 | Msa0960660:intron | 25.0% |
| !!! | TCTATGTATTAACTTGTAGA+GGG | - | chr6_3:80394789-80394808 | None:intergenic | 25.0% |
| !!! | TTCTATGTATTAACTTGTAG+AGG | - | chr6_3:80394790-80394809 | None:intergenic | 25.0% |
| ! | GTCTATTAATAGTTGGATAA+TGG | + | chr6_3:80394841-80394860 | Msa0960660:intron | 25.0% |
| !! | TGTTTGGATCATATTTTACA+TGG | + | chr6_3:80395049-80395068 | Msa0960660:intron | 25.0% |
| AATCAAGTCTGGTAAAAGTT+TGG | + | chr6_3:80393090-80393109 | Msa0960660:CDS | 30.0% | |
| ATCAAGTCTGGTAAAAGTTT+GGG | + | chr6_3:80393091-80393110 | Msa0960660:CDS | 30.0% | |
| !! | TCCAGAAATTTTAAAAGGTG+TGG | + | chr6_3:80393137-80393156 | Msa0960660:intron | 30.0% |
| !!! | ACCACACCTTTTAAAATTTC+TGG | - | chr6_3:80393141-80393160 | None:intergenic | 30.0% |
| GTATGACAATGCAAAAAGAA+AGG | - | chr6_3:80393344-80393363 | None:intergenic | 30.0% | |
| TTTATGTAAATGTGCATACC+AGG | + | chr6_3:80393646-80393665 | Msa0960660:intron | 30.0% | |
| AAACTAAACTATGTCCTTAC+TGG | + | chr6_3:80393699-80393718 | Msa0960660:intron | 30.0% | |
| CATATCTGCAAGAAATTATG+TGG | + | chr6_3:80393733-80393752 | Msa0960660:intron | 30.0% | |
| CAAAAGGATCTCATAAATGT+CGG | - | chr6_3:80393781-80393800 | None:intergenic | 30.0% | |
| !!! | AAGAATGCTGATTTGGATTT+TGG | - | chr6_3:80393826-80393845 | None:intergenic | 30.0% |
| ! | AGACCTGGTGTAAATTTTTA+TGG | + | chr6_3:80393886-80393905 | Msa0960660:intron | 30.0% |
| GAAGTACATGTAAATTATGG+AGG | + | chr6_3:80394003-80394022 | Msa0960660:intron | 30.0% | |
| TAAAATACATTATCCGAGGT+TGG | - | chr6_3:80394029-80394048 | None:intergenic | 30.0% | |
| ! | AACATGTATCTAAGAGCTTT+TGG | + | chr6_3:80394492-80394511 | Msa0960660:intron | 30.0% |
| !!! | TTCAGTTTTAGACTTTTAGC+TGG | + | chr6_3:80394515-80394534 | Msa0960660:intron | 30.0% |
| !! | TTTTAGACTTTTAGCTGGTA+GGG | + | chr6_3:80394520-80394539 | Msa0960660:intron | 30.0% |
| CAGTTATAGACTAATTGCAA+CGG | + | chr6_3:80394687-80394706 | Msa0960660:intron | 30.0% | |
| TTCTGAATTTCAACAGCATA+TGG | + | chr6_3:80394975-80394994 | Msa0960660:intron | 30.0% | |
| ! | TTGTTGATGAATGCATGATT+TGG | + | chr6_3:80395104-80395123 | Msa0960660:CDS | 30.0% |
| AATCAAGTCTGGTAAAAGTT+TGG | + | chr6_3:80393090-80393109 | Msa0960660:CDS | 30.0% | |
| ATCAAGTCTGGTAAAAGTTT+GGG | + | chr6_3:80393091-80393110 | Msa0960660:CDS | 30.0% | |
| !! | TCCAGAAATTTTAAAAGGTG+TGG | + | chr6_3:80393137-80393156 | Msa0960660:intron | 30.0% |
| !!! | ACCACACCTTTTAAAATTTC+TGG | - | chr6_3:80393141-80393160 | None:intergenic | 30.0% |
| GTATGACAATGCAAAAAGAA+AGG | - | chr6_3:80393344-80393363 | None:intergenic | 30.0% | |
| TTTATGTAAATGTGCATACC+AGG | + | chr6_3:80393646-80393665 | Msa0960660:intron | 30.0% | |
| AAACTAAACTATGTCCTTAC+TGG | + | chr6_3:80393699-80393718 | Msa0960660:intron | 30.0% | |
| CATATCTGCAAGAAATTATG+TGG | + | chr6_3:80393733-80393752 | Msa0960660:intron | 30.0% | |
| CAAAAGGATCTCATAAATGT+CGG | - | chr6_3:80393781-80393800 | None:intergenic | 30.0% | |
| !!! | AAGAATGCTGATTTGGATTT+TGG | - | chr6_3:80393826-80393845 | None:intergenic | 30.0% |
| ! | AGACCTGGTGTAAATTTTTA+TGG | + | chr6_3:80393886-80393905 | Msa0960660:intron | 30.0% |
| GAAGTACATGTAAATTATGG+AGG | + | chr6_3:80394003-80394022 | Msa0960660:intron | 30.0% | |
| TAAAATACATTATCCGAGGT+TGG | - | chr6_3:80394029-80394048 | None:intergenic | 30.0% | |
| ! | AACATGTATCTAAGAGCTTT+TGG | + | chr6_3:80394492-80394511 | Msa0960660:intron | 30.0% |
| !!! | TTCAGTTTTAGACTTTTAGC+TGG | + | chr6_3:80394515-80394534 | Msa0960660:intron | 30.0% |
| !! | TTTTAGACTTTTAGCTGGTA+GGG | + | chr6_3:80394520-80394539 | Msa0960660:intron | 30.0% |
| CAGTTATAGACTAATTGCAA+CGG | + | chr6_3:80394687-80394706 | Msa0960660:intron | 30.0% | |
| TTCTGAATTTCAACAGCATA+TGG | + | chr6_3:80394975-80394994 | Msa0960660:intron | 30.0% | |
| ! | TTGTTGATGAATGCATGATT+TGG | + | chr6_3:80395104-80395123 | Msa0960660:CDS | 30.0% |
| ! | TTAAAAGGTGTGGTTGAAGT+TGG | + | chr6_3:80393147-80393166 | Msa0960660:intron | 35.0% |
| TCTTAGATGTTGTGTGAAAG+TGG | - | chr6_3:80393173-80393192 | None:intergenic | 35.0% | |
| TGTTCAATTCATACCAAACG+TGG | - | chr6_3:80393465-80393484 | None:intergenic | 35.0% | |
| !! | AACAAGTCTTCCCATTTTTG+GGG | - | chr6_3:80393540-80393559 | None:intergenic | 35.0% |
| !! | GAACAAGTCTTCCCATTTTT+GGG | - | chr6_3:80393541-80393560 | None:intergenic | 35.0% |
| ! | AGAACAAGTCTTCCCATTTT+TGG | - | chr6_3:80393542-80393561 | None:intergenic | 35.0% |
| AAACTATGTCCTTACTGGAA+AGG | + | chr6_3:80393704-80393723 | Msa0960660:intron | 35.0% | |
| ATGAAATCTCCTTTCCAGTA+AGG | - | chr6_3:80393716-80393735 | None:intergenic | 35.0% | |
| ! | CTACATCAAGAATGCTGATT+TGG | - | chr6_3:80393833-80393852 | None:intergenic | 35.0% |
| TCACAATATCAAAACCAGAG+CGG | - | chr6_3:80393867-80393886 | None:intergenic | 35.0% | |
| CCTCCATAAAAATTTACACC+AGG | - | chr6_3:80393892-80393911 | None:intergenic | 35.0% | |
| ! | CCTGGTGTAAATTTTTATGG+AGG | + | chr6_3:80393889-80393908 | Msa0960660:intron | 35.0% |
| TTTCATTCCTGTACGTTTAG+AGG | + | chr6_3:80393947-80393966 | Msa0960660:intron | 35.0% | |
| GTACTGAAAAGGCAAATATC+AGG | + | chr6_3:80394066-80394085 | Msa0960660:intron | 35.0% | |
| ! | TTGTTTTCCAATAGGAACAG+AGG | + | chr6_3:80394246-80394265 | Msa0960660:intron | 35.0% |
| ! | TGTTTTCCAATAGGAACAGA+GGG | + | chr6_3:80394247-80394266 | Msa0960660:intron | 35.0% |
| !! | ATTTGGTGCTTTAACCAATC+TGG | - | chr6_3:80394277-80394296 | None:intergenic | 35.0% |
| ! | TTGGTTAAAGCACCAAATCA+CGG | + | chr6_3:80394279-80394298 | Msa0960660:intron | 35.0% |
| GATCACATCATTTAATCGGA+CGG | - | chr6_3:80394374-80394393 | None:intergenic | 35.0% | |
| !! | GTTTTAGACTTTTAGCTGGT+AGG | + | chr6_3:80394519-80394538 | Msa0960660:intron | 35.0% |
| TGATATTTGTGAGGGAACAT+AGG | + | chr6_3:80394898-80394917 | Msa0960660:intron | 35.0% | |
| GATATTTGTGAGGGAACATA+GGG | + | chr6_3:80394899-80394918 | Msa0960660:intron | 35.0% | |
| GGGATGTGAAAAGATTGTAA+CGG | + | chr6_3:80394919-80394938 | Msa0960660:intron | 35.0% | |
| TAGTTGTCACATGCATTGTT+TGG | + | chr6_3:80395033-80395052 | Msa0960660:intron | 35.0% | |
| !! | ATGAATGCATGATTTGGTGA+AGG | + | chr6_3:80395110-80395129 | Msa0960660:CDS | 35.0% |
| ! | TTAAAAGGTGTGGTTGAAGT+TGG | + | chr6_3:80393147-80393166 | Msa0960660:intron | 35.0% |
| TCTTAGATGTTGTGTGAAAG+TGG | - | chr6_3:80393173-80393192 | None:intergenic | 35.0% | |
| TGTTCAATTCATACCAAACG+TGG | - | chr6_3:80393465-80393484 | None:intergenic | 35.0% | |
| !! | AACAAGTCTTCCCATTTTTG+GGG | - | chr6_3:80393540-80393559 | None:intergenic | 35.0% |
| !! | GAACAAGTCTTCCCATTTTT+GGG | - | chr6_3:80393541-80393560 | None:intergenic | 35.0% |
| ! | AGAACAAGTCTTCCCATTTT+TGG | - | chr6_3:80393542-80393561 | None:intergenic | 35.0% |
| AAACTATGTCCTTACTGGAA+AGG | + | chr6_3:80393704-80393723 | Msa0960660:intron | 35.0% | |
| ATGAAATCTCCTTTCCAGTA+AGG | - | chr6_3:80393716-80393735 | None:intergenic | 35.0% | |
| ! | CTACATCAAGAATGCTGATT+TGG | - | chr6_3:80393833-80393852 | None:intergenic | 35.0% |
| TCACAATATCAAAACCAGAG+CGG | - | chr6_3:80393867-80393886 | None:intergenic | 35.0% | |
| CCTCCATAAAAATTTACACC+AGG | - | chr6_3:80393892-80393911 | None:intergenic | 35.0% | |
| ! | CCTGGTGTAAATTTTTATGG+AGG | + | chr6_3:80393889-80393908 | Msa0960660:intron | 35.0% |
| TTTCATTCCTGTACGTTTAG+AGG | + | chr6_3:80393947-80393966 | Msa0960660:intron | 35.0% | |
| GTACTGAAAAGGCAAATATC+AGG | + | chr6_3:80394066-80394085 | Msa0960660:intron | 35.0% | |
| ! | TTGTTTTCCAATAGGAACAG+AGG | + | chr6_3:80394246-80394265 | Msa0960660:intron | 35.0% |
| ! | TGTTTTCCAATAGGAACAGA+GGG | + | chr6_3:80394247-80394266 | Msa0960660:intron | 35.0% |
| !! | ATTTGGTGCTTTAACCAATC+TGG | - | chr6_3:80394277-80394296 | None:intergenic | 35.0% |
| ! | TTGGTTAAAGCACCAAATCA+CGG | + | chr6_3:80394279-80394298 | Msa0960660:intron | 35.0% |
| GATCACATCATTTAATCGGA+CGG | - | chr6_3:80394374-80394393 | None:intergenic | 35.0% | |
| !! | GTTTTAGACTTTTAGCTGGT+AGG | + | chr6_3:80394519-80394538 | Msa0960660:intron | 35.0% |
| TGATATTTGTGAGGGAACAT+AGG | + | chr6_3:80394898-80394917 | Msa0960660:intron | 35.0% | |
| GATATTTGTGAGGGAACATA+GGG | + | chr6_3:80394899-80394918 | Msa0960660:intron | 35.0% | |
| GGGATGTGAAAAGATTGTAA+CGG | + | chr6_3:80394919-80394938 | Msa0960660:intron | 35.0% | |
| TAGTTGTCACATGCATTGTT+TGG | + | chr6_3:80395033-80395052 | Msa0960660:intron | 35.0% | |
| GTATCAGAAGCAATCAAGTC+TGG | + | chr6_3:80393079-80393098 | Msa0960660:CDS | 40.0% | |
| TGTCAGGAAACCATTTGTAG+CGG | + | chr6_3:80393318-80393337 | Msa0960660:intron | 40.0% | |
| AAAAGAAAGGCCGCTACAAA+TGG | - | chr6_3:80393331-80393350 | None:intergenic | 40.0% | |
| TTGTCATACGAGATGTCTAG+AGG | + | chr6_3:80393355-80393374 | Msa0960660:CDS | 40.0% | |
| TCGAAACGACTATGATGTGA+TGG | + | chr6_3:80393669-80393688 | Msa0960660:intron | 40.0% | |
| CGAAACGACTATGATGTGAT+GGG | + | chr6_3:80393670-80393689 | Msa0960660:intron | 40.0% | |
| AAAGTCACGACTCTTGCAAA+AGG | - | chr6_3:80393797-80393816 | None:intergenic | 40.0% | |
| !! | GGTTTTGATATTGTGAGACC+TGG | + | chr6_3:80393871-80393890 | Msa0960660:intron | 40.0% |
| TAAATTATGGAGGCCAACCT+CGG | + | chr6_3:80394013-80394032 | Msa0960660:intron | 40.0% | |
| GAACTGACAGAAACTACATG+AGG | + | chr6_3:80394207-80394226 | Msa0960660:intron | 40.0% | |
| ! | GTTTTCCAATAGGAACAGAG+GGG | + | chr6_3:80394248-80394267 | Msa0960660:intron | 40.0% |
| ! | TGGTTAAAGCACCAAATCAC+GGG | + | chr6_3:80394280-80394299 | Msa0960660:intron | 40.0% |
| AGAAATTGTGTCCCGTGATT+TGG | - | chr6_3:80394294-80394313 | None:intergenic | 40.0% | |
| ACAAGGAATGAGGACTTCAA+TGG | + | chr6_3:80394466-80394485 | Msa0960660:intron | 40.0% | |
| !! | AATTGCAACGGTGTTACAAG+AGG | + | chr6_3:80394699-80394718 | Msa0960660:intron | 40.0% |
| AGTGTGGGTGATATTTGTGA+GGG | + | chr6_3:80394890-80394909 | Msa0960660:intron | 40.0% | |
| CATATGGATTTGTCCAGCTT+TGG | + | chr6_3:80394991-80395010 | Msa0960660:intron | 40.0% | |
| TTGACTACAATAGCCAAAGC+TGG | - | chr6_3:80395007-80395026 | None:intergenic | 40.0% | |
| GTATCAGAAGCAATCAAGTC+TGG | + | chr6_3:80393079-80393098 | Msa0960660:CDS | 40.0% | |
| TGTCAGGAAACCATTTGTAG+CGG | + | chr6_3:80393318-80393337 | Msa0960660:intron | 40.0% | |
| AAAAGAAAGGCCGCTACAAA+TGG | - | chr6_3:80393331-80393350 | None:intergenic | 40.0% | |
| TTGTCATACGAGATGTCTAG+AGG | + | chr6_3:80393355-80393374 | Msa0960660:CDS | 40.0% | |
| TCGAAACGACTATGATGTGA+TGG | + | chr6_3:80393669-80393688 | Msa0960660:intron | 40.0% | |
| CGAAACGACTATGATGTGAT+GGG | + | chr6_3:80393670-80393689 | Msa0960660:intron | 40.0% | |
| AAAGTCACGACTCTTGCAAA+AGG | - | chr6_3:80393797-80393816 | None:intergenic | 40.0% | |
| !! | GGTTTTGATATTGTGAGACC+TGG | + | chr6_3:80393871-80393890 | Msa0960660:intron | 40.0% |
| TAAATTATGGAGGCCAACCT+CGG | + | chr6_3:80394013-80394032 | Msa0960660:intron | 40.0% | |
| GAACTGACAGAAACTACATG+AGG | + | chr6_3:80394207-80394226 | Msa0960660:intron | 40.0% | |
| ! | GTTTTCCAATAGGAACAGAG+GGG | + | chr6_3:80394248-80394267 | Msa0960660:intron | 40.0% |
| ! | TGGTTAAAGCACCAAATCAC+GGG | + | chr6_3:80394280-80394299 | Msa0960660:intron | 40.0% |
| AGAAATTGTGTCCCGTGATT+TGG | - | chr6_3:80394294-80394313 | None:intergenic | 40.0% | |
| ACAAGGAATGAGGACTTCAA+TGG | + | chr6_3:80394466-80394485 | Msa0960660:intron | 40.0% | |
| !! | AATTGCAACGGTGTTACAAG+AGG | + | chr6_3:80394699-80394718 | Msa0960660:intron | 40.0% |
| AGTGTGGGTGATATTTGTGA+GGG | + | chr6_3:80394890-80394909 | Msa0960660:intron | 40.0% | |
| CATATGGATTTGTCCAGCTT+TGG | + | chr6_3:80394991-80395010 | Msa0960660:intron | 40.0% | |
| TTGACTACAATAGCCAAAGC+TGG | - | chr6_3:80395007-80395026 | None:intergenic | 40.0% | |
| TCATACGAGATGTCTAGAGG+TGG | + | chr6_3:80393358-80393377 | Msa0960660:CDS | 45.0% | |
| GTTCACACCACAAAATCCGT+GGG | + | chr6_3:80393380-80393399 | Msa0960660:CDS | 45.0% | |
| TTTGCAGCTCAGTTGTCCTT+TGG | + | chr6_3:80393434-80393453 | Msa0960660:CDS | 45.0% | |
| ATGTTCCCTCTCCCCAAAAA+TGG | + | chr6_3:80393526-80393545 | Msa0960660:intron | 45.0% | |
| TGTTCCCTCTCCCCAAAAAT+GGG | + | chr6_3:80393527-80393546 | Msa0960660:intron | 45.0% | |
| !! | TCTTCCCATTTTTGGGGAGA+GGG | - | chr6_3:80393534-80393553 | None:intergenic | 45.0% |
| ACATCATAGTCGTTTCGACC+TGG | - | chr6_3:80393667-80393686 | None:intergenic | 45.0% | |
| TAGTACTCAATGTACCGCTC+TGG | + | chr6_3:80393850-80393869 | Msa0960660:intron | 45.0% | |
| ATGCATGCCTCTAAACGTAC+AGG | - | chr6_3:80393957-80393976 | None:intergenic | 45.0% | |
| CACGGGACACAATTTCTTTC+TGG | + | chr6_3:80394297-80394316 | Msa0960660:intron | 45.0% | |
| ACTAGAAGAGAGAGGAGTCA+AGG | + | chr6_3:80394428-80394447 | Msa0960660:intron | 45.0% | |
| AAACAGGCAAACTGCTATGG+AGG | - | chr6_3:80394578-80394597 | None:intergenic | 45.0% | |
| TCCATAGCAGTTTGCCTGTT+TGG | + | chr6_3:80394577-80394596 | Msa0960660:intron | 45.0% | |
| ACCAAACAGGCAAACTGCTA+TGG | - | chr6_3:80394581-80394600 | None:intergenic | 45.0% | |
| ATAGCAGTTTGCCTGTTTGG+TGG | + | chr6_3:80394580-80394599 | Msa0960660:intron | 45.0% | |
| TAGCAGTTTGCCTGTTTGGT+GGG | + | chr6_3:80394581-80394600 | Msa0960660:intron | 45.0% | |
| GCAGTTGTGAAGAATCACAG+CGG | + | chr6_3:80394866-80394885 | Msa0960660:intron | 45.0% | |
| CAGTGTGGGTGATATTTGTG+AGG | + | chr6_3:80394889-80394908 | Msa0960660:intron | 45.0% | |
| CATGGAGCTTATGTTGCAGT+TGG | + | chr6_3:80395067-80395086 | Msa0960660:intron | 45.0% | |
| TCATACGAGATGTCTAGAGG+TGG | + | chr6_3:80393358-80393377 | Msa0960660:CDS | 45.0% | |
| GTTCACACCACAAAATCCGT+GGG | + | chr6_3:80393380-80393399 | Msa0960660:CDS | 45.0% | |
| TTTGCAGCTCAGTTGTCCTT+TGG | + | chr6_3:80393434-80393453 | Msa0960660:CDS | 45.0% | |
| ATGTTCCCTCTCCCCAAAAA+TGG | + | chr6_3:80393526-80393545 | Msa0960660:intron | 45.0% | |
| TGTTCCCTCTCCCCAAAAAT+GGG | + | chr6_3:80393527-80393546 | Msa0960660:intron | 45.0% | |
| !! | TCTTCCCATTTTTGGGGAGA+GGG | - | chr6_3:80393534-80393553 | None:intergenic | 45.0% |
| ACATCATAGTCGTTTCGACC+TGG | - | chr6_3:80393667-80393686 | None:intergenic | 45.0% | |
| TAGTACTCAATGTACCGCTC+TGG | + | chr6_3:80393850-80393869 | Msa0960660:intron | 45.0% | |
| ATGCATGCCTCTAAACGTAC+AGG | - | chr6_3:80393957-80393976 | None:intergenic | 45.0% | |
| CACGGGACACAATTTCTTTC+TGG | + | chr6_3:80394297-80394316 | Msa0960660:intron | 45.0% | |
| ACTAGAAGAGAGAGGAGTCA+AGG | + | chr6_3:80394428-80394447 | Msa0960660:intron | 45.0% | |
| AAACAGGCAAACTGCTATGG+AGG | - | chr6_3:80394578-80394597 | None:intergenic | 45.0% | |
| TCCATAGCAGTTTGCCTGTT+TGG | + | chr6_3:80394577-80394596 | Msa0960660:intron | 45.0% | |
| ACCAAACAGGCAAACTGCTA+TGG | - | chr6_3:80394581-80394600 | None:intergenic | 45.0% | |
| ATAGCAGTTTGCCTGTTTGG+TGG | + | chr6_3:80394580-80394599 | Msa0960660:intron | 45.0% | |
| TAGCAGTTTGCCTGTTTGGT+GGG | + | chr6_3:80394581-80394600 | Msa0960660:intron | 45.0% | |
| GCAGTTGTGAAGAATCACAG+CGG | + | chr6_3:80394866-80394885 | Msa0960660:intron | 45.0% | |
| CAGTGTGGGTGATATTTGTG+AGG | + | chr6_3:80394889-80394908 | Msa0960660:intron | 45.0% | |
| CATGGAGCTTATGTTGCAGT+TGG | + | chr6_3:80395067-80395086 | Msa0960660:intron | 45.0% | |
| GTTTGGGAATCCATCTCTCG+CGG | + | chr6_3:80393107-80393126 | Msa0960660:CDS | 50.0% | |
| GGTTCACACCACAAAATCCG+TGG | + | chr6_3:80393379-80393398 | Msa0960660:CDS | 50.0% | |
| ! | AAATCCGTGGGTTGCTCGAA+AGG | + | chr6_3:80393392-80393411 | Msa0960660:CDS | 50.0% |
| ! | AATCCGTGGGTTGCTCGAAA+GGG | + | chr6_3:80393393-80393412 | Msa0960660:CDS | 50.0% |
| ATTCCCTTTCGAGCAACCCA+CGG | - | chr6_3:80393399-80393418 | None:intergenic | 50.0% | |
| !! | TCCTTTGGTGTTGCCACGTT+TGG | + | chr6_3:80393449-80393468 | Msa0960660:CDS | 50.0% |
| ACCAAACGTGGCAACACCAA+AGG | - | chr6_3:80393453-80393472 | None:intergenic | 50.0% | |
| !! | GTCTTCCCATTTTTGGGGAG+AGG | - | chr6_3:80393535-80393554 | None:intergenic | 50.0% |
| GGAATCCCCTCTGTTCCTAT+TGG | - | chr6_3:80394256-80394275 | None:intergenic | 50.0% | |
| GAACAGAGGGGATTCCAGAT+TGG | + | chr6_3:80394260-80394279 | Msa0960660:intron | 50.0% | |
| GTGGCATGACTAGAAGAGAG+AGG | + | chr6_3:80394420-80394439 | Msa0960660:intron | 50.0% | |
| TAACAGTGCTCCCACCAAAC+AGG | - | chr6_3:80394594-80394613 | None:intergenic | 50.0% | |
| AAGAATCACAGCGGCAGTGT+GGG | + | chr6_3:80394875-80394894 | Msa0960660:intron | 50.0% | |
| GTTTGGGAATCCATCTCTCG+CGG | + | chr6_3:80393107-80393126 | Msa0960660:CDS | 50.0% | |
| GGTTCACACCACAAAATCCG+TGG | + | chr6_3:80393379-80393398 | Msa0960660:CDS | 50.0% | |
| ! | AAATCCGTGGGTTGCTCGAA+AGG | + | chr6_3:80393392-80393411 | Msa0960660:CDS | 50.0% |
| ! | AATCCGTGGGTTGCTCGAAA+GGG | + | chr6_3:80393393-80393412 | Msa0960660:CDS | 50.0% |
| ATTCCCTTTCGAGCAACCCA+CGG | - | chr6_3:80393399-80393418 | None:intergenic | 50.0% | |
| !! | TCCTTTGGTGTTGCCACGTT+TGG | + | chr6_3:80393449-80393468 | Msa0960660:CDS | 50.0% |
| ACCAAACGTGGCAACACCAA+AGG | - | chr6_3:80393453-80393472 | None:intergenic | 50.0% | |
| !! | GTCTTCCCATTTTTGGGGAG+AGG | - | chr6_3:80393535-80393554 | None:intergenic | 50.0% |
| GGAATCCCCTCTGTTCCTAT+TGG | - | chr6_3:80394256-80394275 | None:intergenic | 50.0% | |
| GAACAGAGGGGATTCCAGAT+TGG | + | chr6_3:80394260-80394279 | Msa0960660:intron | 50.0% | |
| GTGGCATGACTAGAAGAGAG+AGG | + | chr6_3:80394420-80394439 | Msa0960660:intron | 50.0% | |
| TAACAGTGCTCCCACCAAAC+AGG | - | chr6_3:80394594-80394613 | None:intergenic | 50.0% | |
| AAGAATCACAGCGGCAGTGT+GGG | + | chr6_3:80394875-80394894 | Msa0960660:intron | 50.0% | |
| ! | CGAGCAACCCACGGATTTTG+TGG | - | chr6_3:80393390-80393409 | None:intergenic | 55.0% |
| GGGTTGCTCGAAAGGGAATC+AGG | + | chr6_3:80393400-80393419 | Msa0960660:CDS | 55.0% | |
| ATCGCTAGCAGAGTGCAGTG+TGG | + | chr6_3:80394401-80394420 | Msa0960660:intron | 55.0% | |
| !! | GGTGGGAGCACTGTTATCTG+CGG | + | chr6_3:80394598-80394617 | Msa0960660:intron | 55.0% |
| GAAGAATCACAGCGGCAGTG+TGG | + | chr6_3:80394874-80394893 | Msa0960660:intron | 55.0% | |
| ! | CGAGCAACCCACGGATTTTG+TGG | - | chr6_3:80393390-80393409 | None:intergenic | 55.0% |
| GGGTTGCTCGAAAGGGAATC+AGG | + | chr6_3:80393400-80393419 | Msa0960660:CDS | 55.0% | |
| ATCGCTAGCAGAGTGCAGTG+TGG | + | chr6_3:80394401-80394420 | Msa0960660:intron | 55.0% | |
| !! | GGTGGGAGCACTGTTATCTG+CGG | + | chr6_3:80394598-80394617 | Msa0960660:intron | 55.0% |
| GAAGAATCACAGCGGCAGTG+TGG | + | chr6_3:80394874-80394893 | Msa0960660:intron | 55.0% | |
| GGACTAGAGGCCGCGAGAGA+TGG | - | chr6_3:80393120-80393139 | None:intergenic | 65.0% | |
| GGACTAGAGGCCGCGAGAGA+TGG | - | chr6_3:80393120-80393139 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 80393064 | 80395129 | 80393064 | ID=Msa0960660;Name=Msa0960660 |
| chr6_3 | mRNA | 80393064 | 80395129 | 80393064 | ID=Msa0960660-mRNA-1;Parent=Msa0960660;Name=Msa0960660-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0|0|0.66|0|0|3|0|82 |
| chr6_3 | exon | 80393064 | 80393135 | 80393064 | ID=Msa0960660-mRNA-1:exon:14463;Parent=Msa0960660-mRNA-1 |
| chr6_3 | exon | 80393338 | 80393470 | 80393338 | ID=Msa0960660-mRNA-1:exon:14464;Parent=Msa0960660-mRNA-1 |
| chr6_3 | exon | 80395086 | 80395129 | 80395086 | ID=Msa0960660-mRNA-1:exon:14465;Parent=Msa0960660-mRNA-1 |
| chr6_3 | CDS | 80393064 | 80393135 | 80393064 | ID=Msa0960660-mRNA-1:cds;Parent=Msa0960660-mRNA-1 |
| chr6_3 | CDS | 80393338 | 80393470 | 80393338 | ID=Msa0960660-mRNA-1:cds;Parent=Msa0960660-mRNA-1 |
| chr6_3 | CDS | 80395086 | 80395129 | 80395086 | ID=Msa0960660-mRNA-1:cds;Parent=Msa0960660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
