AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1392240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1392240 MtrunA17_Chr3g0144021 94.009 217 11 1 1 217 1 215 2.02e-154 426
Msa1392240 MtrunA17_Chr1g0212511 67.456 169 50 4 1 169 5 168 3.36e-75 228
Msa1392240 MtrunA17_Chr7g0222981 45.226 199 83 4 1 196 1 176 1.59e-47 154
Msa1392240 MtrunA17_Chr2g0283141 37.363 91 56 1 54 143 24 114 3.25e-15 73.6
Msa1392240 MtrunA17_Chr4g0043891 44.262 61 34 0 84 144 8 68 1.71e-13 67.4
Msa1392240 MtrunA17_Chr7g0223471 44.444 63 35 0 82 144 45 107 2.41e-13 68.2
Msa1392240 MtrunA17_Chr1g0153171 40.789 76 45 0 84 159 90 165 1.27e-12 64.7
Msa1392240 MtrunA17_Chr8g0392991 44.262 61 34 0 84 144 96 156 3.38e-12 64.7
Msa1392240 MtrunA17_Chr4g0031341 42.623 61 35 0 84 144 25 85 2.28e-11 61.6
Msa1392240 MtrunA17_Chr7g0238431 45.000 60 33 0 84 143 8 67 5.34e-11 59.7
Msa1392240 MtrunA17_Chr5g0436661 38.462 65 40 0 84 148 33 97 5.76e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1392240 AT4G35550.1 53.333 225 76 4 19 215 35 258 2.46e-69 213
Msa1392240 AT1G20700.1 49.738 191 83 4 15 203 24 203 2.62e-60 188
Msa1392240 AT1G20700.3 48.925 186 82 4 15 198 24 198 5.60e-57 179
Msa1392240 AT1G20700.2 49.275 138 59 2 66 203 15 141 5.90e-43 142
Msa1392240 AT1G20710.1 46.632 193 93 5 15 205 8 192 1.52e-42 142
Msa1392240 AT5G45980.1 46.774 62 33 0 82 143 53 114 1.42e-14 71.6
Msa1392240 AT2G33880.2 45.161 62 34 0 82 143 53 114 3.38e-14 70.9
Msa1392240 AT2G33880.1 45.161 62 34 0 82 143 53 114 3.78e-14 70.9
Msa1392240 AT1G46480.2 47.541 61 32 0 84 144 90 150 4.12e-13 65.9
Msa1392240 AT3G18010.1 40.845 71 42 0 84 154 76 146 5.55e-13 67.4
Msa1392240 AT3G11260.1 36.458 96 56 2 84 176 24 117 1.11e-12 64.3
Msa1392240 AT1G46480.1 47.541 61 32 0 84 144 90 150 1.31e-12 65.5
Msa1392240 AT5G05770.1 33.333 84 55 1 84 167 29 111 6.68e-12 60.8
Msa1392240 AT2G28610.1 46.667 60 32 0 84 143 8 67 7.80e-12 63.2
Msa1392240 AT5G59340.1 43.077 65 37 0 80 144 10 74 2.27e-11 62.0
Msa1392240 AT2G01500.1 35.577 104 57 2 70 163 37 140 8.16e-11 60.5

Find 55 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGAGACTAATGTTTATAAT+TGG 0.232522 tig0021477:-60473 Msa1392240:CDS
TTGAACGAGCTCTTCTGTTC+TGG 0.269547 tig0021477:+60448 None:intergenic
TGTTATAATACTATCTTATC+AGG 0.298547 tig0021477:-59634 Msa1392240:three_prime_UTR
ATAGAATGTAATATCTTATC+AGG 0.334179 tig0021477:-59593 Msa1392240:three_prime_UTR
TGATAAGATATTACATTCTA+TGG 0.339373 tig0021477:+59595 None:intergenic
TATGTCTTTGATCTTCTGTT+TGG 0.364760 tig0021477:+60527 None:intergenic
TACTTTCTTTGATAACTGAT+TGG 0.368334 tig0021477:-59821 Msa1392240:exon
TTGGTTGATGACAGAATTCT+AGG 0.371445 tig0021477:-59802 Msa1392240:three_prime_UTR
GCTATTACTGTGATTTGATC+AGG 0.372619 tig0021477:-59663 Msa1392240:three_prime_UTR
AAGAGTGAAGGAGGAGGAGG+AGG 0.394048 tig0021477:-62098 Msa1392240:CDS
TCAACTTCTGTGTCTGCCTC+TGG 0.402663 tig0021477:+60384 None:intergenic
TATATATGCCACTTCATTTG+TGG 0.403737 tig0021477:+59739 None:intergenic
GTCTTTGATCTTCTGTTTGG+TGG 0.403902 tig0021477:+60530 None:intergenic
GTTTAGACTAAGTATACATT+TGG 0.408425 tig0021477:-59525 Msa1392240:three_prime_UTR
CGTTGGAGTCCAACGCTGCC+TGG 0.416225 tig0021477:+60605 None:intergenic
CTGGACACAAGATAACTTCC+AGG 0.432136 tig0021477:-60623 Msa1392240:CDS
AATTCTAGGAGTGATCTATT+AGG 0.433239 tig0021477:-59788 Msa1392240:three_prime_UTR
TGCAGGATTTGAGCACTTGT+TGG 0.434550 tig0021477:-59876 Msa1392240:intron
CTCAACAAGCTGATCAGAAA+TGG 0.436221 tig0021477:+62001 None:intergenic
GAGAAGAGTGAAGGAGGAGG+AGG 0.439930 tig0021477:-62101 Msa1392240:CDS
TGAGAGTTTATCACCTCATC+GGG 0.446050 tig0021477:-60310 Msa1392240:CDS
CCACTGATGATGGCTTGCTC+TGG 0.448763 tig0021477:-60642 Msa1392240:CDS
GCAGGATTTGAGCACTTGTT+GGG 0.456755 tig0021477:-59875 Msa1392240:intron
TCTTTGATCTTCTGTTTGGT+GGG 0.460764 tig0021477:+60531 None:intergenic
TTGAGAGTTTATCACCTCAT+CGG 0.471970 tig0021477:-60311 Msa1392240:CDS
AGTTATGACCGATGAACAAA+TGG 0.474281 tig0021477:-62057 Msa1392240:CDS
ACCGTGTTGCCCTAGTTCAA+TGG 0.479896 tig0021477:+60503 None:intergenic
TAAAAGTTCCATTTGTTCAT+CGG 0.487682 tig0021477:+62049 None:intergenic
AGGAAGAATGGCGGGATTAG+CGG 0.497878 tig0021477:-62255 Msa1392240:five_prime_UTR
TTAAGCTTAATACCTATGTC+AGG 0.509678 tig0021477:+60264 None:intergenic
TACGCTCAAGTATTTGAAGC+TGG 0.512249 tig0021477:+60577 None:intergenic
CATGAGAAGAGTGAAGGAGG+AGG 0.514829 tig0021477:-62104 Msa1392240:CDS
ATTTGAAGCTGGATAGGCGT+TGG 0.517894 tig0021477:+60588 None:intergenic
GTACTGTGATCCACTGATGA+TGG 0.540609 tig0021477:-60652 Msa1392240:CDS
TCAAGTATTTGAAGCTGGAT+AGG 0.541162 tig0021477:+60582 None:intergenic
AAGCAATCATCTGTTACTGC+AGG 0.542364 tig0021477:-60420 Msa1392240:CDS
GAATGTTCAGGACTGAGACT+TGG 0.551998 tig0021477:-60681 Msa1392240:intron
ACCTGCGAGGTCGTGTTGAG+TGG 0.570461 tig0021477:+61962 None:intergenic
AAAGACATAACCATTGAACT+AGG 0.570662 tig0021477:-60513 Msa1392240:CDS
ACCACTCAACACGACCTCGC+AGG 0.579613 tig0021477:-61963 Msa1392240:intron
CCAATTATAAACATTAGTCT+CGG 0.584869 tig0021477:+60473 None:intergenic
TTTATCACCTCATCGGGTCA+AGG 0.591799 tig0021477:-60304 Msa1392240:CDS
GAGCATGAGAAGAGTGAAGG+AGG 0.602160 tig0021477:-62107 Msa1392240:CDS
AAGACATAACCATTGAACTA+GGG 0.603476 tig0021477:-60512 Msa1392240:CDS
GCAGAGCATGAGAAGAGTGA+AGG 0.604376 tig0021477:-62110 Msa1392240:CDS
CCAGAGCAAGCCATCATCAG+TGG 0.606100 tig0021477:+60642 None:intergenic
AGATAACTTCCAGGCAGCGT+TGG 0.612319 tig0021477:-60614 Msa1392240:CDS
TATTACATTCTATGGTAACA+TGG 0.618469 tig0021477:+59603 None:intergenic
TACATATCCTTGACCCGATG+AGG 0.618531 tig0021477:+60297 None:intergenic
AGGAAATCATGCAGAGCCAG+AGG 0.631315 tig0021477:-60400 Msa1392240:CDS
ACCATTGAACTAGGGCAACA+CGG 0.634091 tig0021477:-60504 Msa1392240:CDS
TTGATGAACCACAAATGAAG+TGG 0.636166 tig0021477:-59747 Msa1392240:three_prime_UTR
TACATTCAGAGTCCTGACAT+AGG 0.642781 tig0021477:-60276 Msa1392240:intron
ATGGCGGGATTAGCGGAGAG+AGG 0.651628 tig0021477:-62248 Msa1392240:five_prime_UTR
ATAGTAGTAGTTTACCTGCG+AGG 0.718032 tig0021477:+61949 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATGAAAATAGTTTAA+CGG + tig0021477:60528-60547 None:intergenic 10.0%
!!! TTTAATTCTCTATTTTTTTA+AGG + tig0021477:60968-60987 None:intergenic 10.0%
!! CTGTAATATAACATTTATAT+AGG + tig0021477:60175-60194 None:intergenic 15.0%
!!! AATAATGTACGATAATTTTT+CGG + tig0021477:60832-60851 None:intergenic 15.0%
!! TCTATAAAAAAAAACACTAA+AGG + tig0021477:60890-60909 None:intergenic 15.0%
!!! AAAACTAGTTTAATACAAAA+GGG + tig0021477:61609-61628 None:intergenic 15.0%
!!! AAAAACTAGTTTAATACAAA+AGG + tig0021477:61610-61629 None:intergenic 15.0%
!! TAAATTTATATGACATTAAG+TGG - tig0021477:61910-61929 Msa1392240:intron 15.0%
!! TATAAAGAAAAGAAAAAGAG+AGG - tig0021477:59542-59561 Msa1392240:three_prime_UTR 20.0%
!! ATATAGGCAAATTTGTATAA+GGG + tig0021477:60159-60178 None:intergenic 20.0%
!! TATATAGGCAAATTTGTATA+AGG + tig0021477:60160-60179 None:intergenic 20.0%
!!! AAAACATTCATTTTTGTAAG+AGG - tig0021477:60433-60452 Msa1392240:CDS 20.0%
!!! GAACAGAAAAATTGATTTTT+TGG + tig0021477:60755-60774 None:intergenic 20.0%
!! AAAAACACTAAAGGTTTAAT+TGG + tig0021477:60881-60900 None:intergenic 20.0%
!!! TTTTTATAGGTGAATATTAG+TGG - tig0021477:61001-61020 Msa1392240:intron 20.0%
!! ATTCAATTGTAAACAACAAA+TGG + tig0021477:61804-61823 None:intergenic 20.0%
!! TGTTATAATACTATCTTATC+AGG - tig0021477:62183-62202 Msa1392240:five_prime_UTR 20.0%
!! TGATAAGATATTACATTCTA+TGG + tig0021477:62225-62244 None:intergenic 20.0%
!! ATAGAATGTAATATCTTATC+AGG - tig0021477:62224-62243 Msa1392240:five_prime_UTR 20.0%
! AAGAAAAAGAAGAAGAGAAA+TGG - tig0021477:59682-59701 Msa1392240:three_prime_UTR 25.0%
! TAAAAGTTCCATTTGTTCAT+CGG + tig0021477:59771-59790 None:intergenic 25.0%
!! AGAAAGAGAATACATGATTT+TGG - tig0021477:60108-60127 Msa1392240:intron 25.0%
! AGAACTCACAAAATTAAATG+TGG + tig0021477:60389-60408 None:intergenic 25.0%
! ACTAATGGAAACAACTTATT+TGG + tig0021477:60618-60637 None:intergenic 25.0%
!!! ACACTTTTTGGAATTACTAA+TGG + tig0021477:60633-60652 None:intergenic 25.0%
! TTCAAATAAGTCTATCCAAA+CGG - tig0021477:60679-60698 Msa1392240:intron 25.0%
! CCTATAAAAAAAAACACTCA+AGG + tig0021477:60991-61010 None:intergenic 25.0%
!!! CCTTGAGTGTTTTTTTTTAT+AGG - tig0021477:60988-61007 Msa1392240:intron 25.0%
!! CCAATTATAAACATTAGTCT+CGG + tig0021477:61347-61366 None:intergenic 25.0%
! GTTGTTTACAATTGAATGAT+TGG - tig0021477:61807-61826 Msa1392240:intron 25.0%
! AATTACTTAGCTATAAAACC+TGG - tig0021477:61855-61874 Msa1392240:intron 25.0%
!! TACTTTCTTTGATAACTGAT+TGG - tig0021477:61996-62015 Msa1392240:CDS 25.0%
! TATTACATTCTATGGTAACA+TGG + tig0021477:62217-62236 None:intergenic 25.0%
!! CAATTTTCATCAAAATCTTG+TGG - tig0021477:62250-62269 Msa1392240:five_prime_UTR 25.0%
! GTTTAGACTAAGTATACATT+TGG - tig0021477:62292-62311 Msa1392240:five_prime_UTR 25.0%
AAAGAAAAAGAGAGGAAGAA+TGG - tig0021477:59550-59569 Msa1392240:three_prime_UTR 30.0%
TTTGGCAACAAGAAAAAGAA+AGG + tig0021477:59623-59642 None:intergenic 30.0%
TGTTGCCAAAAACAAAAGAT+AGG - tig0021477:59633-59652 Msa1392240:three_prime_UTR 30.0%
!!! CACTTCCTATCTTTTGTTTT+TGG + tig0021477:59641-59660 None:intergenic 30.0%
AAAAAGAAGAAGAGAAATGG+AGG - tig0021477:59685-59704 Msa1392240:three_prime_UTR 30.0%
!! AATTTCATTTTTGTTGTCCC+TGG - tig0021477:60282-60301 Msa1392240:CDS 30.0%
GACATTGCATAATTTATGCA+GGG - tig0021477:60332-60351 Msa1392240:CDS 30.0%
AAATTAAATGTGGAGAAGTG+AGG + tig0021477:60379-60398 None:intergenic 30.0%
! TAAACACTTGTGACACTTTT+TGG + tig0021477:60645-60664 None:intergenic 30.0%
TCAAATAAGTCTATCCAAAC+GGG - tig0021477:60680-60699 Msa1392240:intron 30.0%
!!! ATTGATTTTTTGGAATCGAG+AGG + tig0021477:60745-60764 None:intergenic 30.0%
GTCAATGTTATTGAATGTTC+AGG - tig0021477:61124-61143 Msa1392240:intron 30.0%
TATGTCTTTGATCTTCTGTT+TGG + tig0021477:61293-61312 None:intergenic 30.0%
AAAGACATAACCATTGAACT+AGG - tig0021477:61304-61323 Msa1392240:intron 30.0%
AAGACATAACCATTGAACTA+GGG - tig0021477:61305-61324 Msa1392240:intron 30.0%
CCGAGACTAATGTTTATAAT+TGG - tig0021477:61344-61363 Msa1392240:intron 30.0%
!! TCACATGTTTTGTTCTCTTT+TGG + tig0021477:61463-61482 None:intergenic 30.0%
TTAAGCTTAATACCTATGTC+AGG + tig0021477:61556-61575 None:intergenic 30.0%
TCTATGAATACTCACTAACT+AGG - tig0021477:61578-61597 Msa1392240:intron 30.0%
TTAATGCCTAAAACGAAGTA+TGG + tig0021477:61893-61912 None:intergenic 30.0%
!! ATTAAGTGGTTTGTTTATGC+AGG - tig0021477:61924-61943 Msa1392240:intron 30.0%
! AATTCTAGGAGTGATCTATT+AGG - tig0021477:62029-62048 Msa1392240:CDS 30.0%
! TTGTGGTTCATCAACATTTT+TGG + tig0021477:62064-62083 None:intergenic 30.0%
! TATATATGCCACTTCATTTG+TGG + tig0021477:62081-62100 None:intergenic 30.0%
AGTTATGACCGATGAACAAA+TGG - tig0021477:59760-59779 Msa1392240:three_prime_UTR 35.0%
GGACATTGCATAATTTATGC+AGG - tig0021477:60331-60350 Msa1392240:CDS 35.0%
!!! TTTTTTGTCTAGTAGCCTAG+TGG + tig0021477:60414-60433 None:intergenic 35.0%
CTTATTTCCATAAGCTCTCT+AGG + tig0021477:60574-60593 None:intergenic 35.0%
AGAGAGCTTATGGAAATAAG+CGG - tig0021477:60574-60593 Msa1392240:CDS 35.0%
AGTGTCACAAGTGTTTATGT+CGG - tig0021477:60648-60667 Msa1392240:CDS 35.0%
! AGTGAGTGCAGGATATATTT+TGG + tig0021477:60707-60726 None:intergenic 35.0%
CTAGTCCTAAATAAGTAGCT+CGG + tig0021477:61083-61102 None:intergenic 35.0%
! TCAAGTATTTGAAGCTGGAT+AGG + tig0021477:61238-61257 None:intergenic 35.0%
TCTTTGATCTTCTGTTTGGT+GGG + tig0021477:61289-61308 None:intergenic 35.0%
TTGAGAGTTTATCACCTCAT+CGG - tig0021477:61506-61525 Msa1392240:intron 35.0%
CACATGAAGAAATTCGTGTA+AGG - tig0021477:61646-61665 Msa1392240:intron 35.0%
ATTGTCAATCGTATCGAACA+TGG + tig0021477:61675-61694 None:intergenic 35.0%
ACAATTCTCTGTGTTCAGTT+AGG - tig0021477:61690-61709 Msa1392240:intron 35.0%
CAATTCTCTGTGTTCAGTTA+GGG - tig0021477:61691-61710 Msa1392240:intron 35.0%
AATTCTCTGTGTTCAGTTAG+GGG - tig0021477:61692-61711 Msa1392240:intron 35.0%
GTATGGCTGTTTATTTAACC+AGG + tig0021477:61876-61895 None:intergenic 35.0%
! AAACAGCCATACTTCGTTTT+AGG - tig0021477:61884-61903 Msa1392240:intron 35.0%
TTGGGAAAAATTGAAGTTGC+AGG - tig0021477:61960-61979 Msa1392240:intron 35.0%
!! TTGGTTGATGACAGAATTCT+AGG - tig0021477:62015-62034 Msa1392240:CDS 35.0%
!! GGTTCATCAACATTTTTGGA+TGG + tig0021477:62060-62079 None:intergenic 35.0%
TTGATGAACCACAAATGAAG+TGG - tig0021477:62070-62089 Msa1392240:CDS 35.0%
GCTATTACTGTGATTTGATC+AGG - tig0021477:62154-62173 Msa1392240:five_prime_UTR 35.0%
GAAAAAGAGAGGAAGAATGG+CGG - tig0021477:59553-59572 Msa1392240:three_prime_UTR 40.0%
AAAAAGAGAGGAAGAATGGC+GGG - tig0021477:59554-59573 Msa1392240:three_prime_UTR 40.0%
CTCAACAAGCTGATCAGAAA+TGG + tig0021477:59819-59838 None:intergenic 40.0%
ATAGTAGTAGTTTACCTGCG+AGG + tig0021477:59871-59890 None:intergenic 40.0%
!! TTTTGTGAGTTCTAGCCACT+AGG - tig0021477:60396-60415 Msa1392240:CDS 40.0%
TAGCTATCCTAGAGAGCTTA+TGG - tig0021477:60564-60583 Msa1392240:CDS 40.0%
!! GGATATATTTTGGACCCGTT+TGG + tig0021477:60697-60716 None:intergenic 40.0%
AAATTGGTTACAGTGAGTGC+AGG + tig0021477:60718-60737 None:intergenic 40.0%
GGAATCGAGAGGACAAAAAT+TGG + tig0021477:60734-60753 None:intergenic 40.0%
ACCAACCGAGCTACTTATTT+AGG - tig0021477:61075-61094 Msa1392240:intron 40.0%
TCCTAAATAAGTAGCTCGGT+TGG + tig0021477:61079-61098 None:intergenic 40.0%
GACAAGCGCTAAATCAATCA+AGG + tig0021477:61107-61126 None:intergenic 40.0%
! TACGCTCAAGTATTTGAAGC+TGG + tig0021477:61243-61262 None:intergenic 40.0%
! CTTGAGCGTATTTTCGATGA+AGG - tig0021477:61253-61272 Msa1392240:intron 40.0%
! CGTATTTTCGATGAAGGCAA+TGG - tig0021477:61259-61278 Msa1392240:intron 40.0%
GTCTTTGATCTTCTGTTTGG+TGG + tig0021477:61290-61309 None:intergenic 40.0%
AAGCAATCATCTGTTACTGC+AGG - tig0021477:61397-61416 Msa1392240:intron 40.0%
TGAGAGTTTATCACCTCATC+GGG - tig0021477:61507-61526 Msa1392240:intron 40.0%
TACATTCAGAGTCCTGACAT+AGG - tig0021477:61541-61560 Msa1392240:intron 40.0%
GAATGTTCAGGACTGAGACT+TGG - tig0021477:61136-61155 Msa1392240:intron 45.0%
GTACTGTGATCCACTGATGA+TGG - tig0021477:61165-61184 Msa1392240:intron 45.0%
CTGGACACAAGATAACTTCC+AGG - tig0021477:61194-61213 Msa1392240:intron 45.0%
! ATTTGAAGCTGGATAGGCGT+TGG + tig0021477:61232-61251 None:intergenic 45.0%
ACCATTGAACTAGGGCAACA+CGG - tig0021477:61313-61332 Msa1392240:intron 45.0%
TTGAACGAGCTCTTCTGTTC+TGG + tig0021477:61372-61391 None:intergenic 45.0%
TTTATCACCTCATCGGGTCA+AGG - tig0021477:61513-61532 Msa1392240:intron 45.0%
TACATATCCTTGACCCGATG+AGG + tig0021477:61523-61542 None:intergenic 45.0%
TGCAGGATTTGAGCACTTGT+TGG - tig0021477:61941-61960 Msa1392240:intron 45.0%
GCAGGATTTGAGCACTTGTT+GGG - tig0021477:61942-61961 Msa1392240:intron 45.0%
! AGGAAGAATGGCGGGATTAG+CGG - tig0021477:59562-59581 Msa1392240:three_prime_UTR 50.0%
GCAGAGCATGAGAAGAGTGA+AGG - tig0021477:59707-59726 Msa1392240:three_prime_UTR 50.0%
GAGCATGAGAAGAGTGAAGG+AGG - tig0021477:59710-59729 Msa1392240:three_prime_UTR 50.0%
CATGAGAAGAGTGAAGGAGG+AGG - tig0021477:59713-59732 Msa1392240:three_prime_UTR 50.0%
! ATGTGGAGAAGTGAGGTGTC+CGG + tig0021477:60372-60391 None:intergenic 50.0%
!! CAAGGGACACTGAAGGTACT+AGG + tig0021477:61051-61070 None:intergenic 50.0%
CTAGTACCTTCAGTGTCCCT+TGG - tig0021477:61049-61068 Msa1392240:intron 50.0%
AGATAACTTCCAGGCAGCGT+TGG - tig0021477:61203-61222 Msa1392240:intron 50.0%
ACCGTGTTGCCCTAGTTCAA+TGG + tig0021477:61317-61336 None:intergenic 50.0%
AGGAAATCATGCAGAGCCAG+AGG - tig0021477:61417-61436 Msa1392240:intron 50.0%
TCAACTTCTGTGTCTGCCTC+TGG + tig0021477:61436-61455 None:intergenic 50.0%
GAGAAGAGTGAAGGAGGAGG+AGG - tig0021477:59716-59735 Msa1392240:three_prime_UTR 55.0%
AAGAGTGAAGGAGGAGGAGG+AGG - tig0021477:59719-59738 Msa1392240:three_prime_UTR 55.0%
TCCCTGGAGCTTAGCTCAGT+TGG - tig0021477:60298-60317 Msa1392240:CDS 55.0%
GCCAACTGAGCTAAGCTCCA+GGG + tig0021477:60302-60321 None:intergenic 55.0%
CTGGAGCTTAGCTCAGTTGG+CGG - tig0021477:60301-60320 Msa1392240:CDS 55.0%
AGCTTAGCTCAGTTGGCGGT+TGG - tig0021477:60305-60324 Msa1392240:CDS 55.0%
! TGTGGAGAAGTGAGGTGTCC+GGG + tig0021477:60371-60390 None:intergenic 55.0%
!! TAGCTCGGTTGGTGAGCCAA+GGG + tig0021477:61068-61087 None:intergenic 55.0%
CCAGAGCAAGCCATCATCAG+TGG + tig0021477:61178-61197 None:intergenic 55.0%
!! CCACTGATGATGGCTTGCTC+TGG - tig0021477:61175-61194 Msa1392240:intron 55.0%
! ATGGCGGGATTAGCGGAGAG+AGG - tig0021477:59569-59588 Msa1392240:three_prime_UTR 60.0%
AGTGAAGGAGGAGGAGGAGG+AGG - tig0021477:59722-59741 Msa1392240:three_prime_UTR 60.0%
ACCACTCAACACGACCTCGC+AGG - tig0021477:59854-59873 Msa1392240:CDS 60.0%
ACCTGCGAGGTCGTGTTGAG+TGG + tig0021477:59858-59877 None:intergenic 60.0%
CGCCAACTGAGCTAAGCTCC+AGG + tig0021477:60303-60322 None:intergenic 60.0%
TAGCTCAGTTGGCGGTTGGC+AGG - tig0021477:60309-60328 Msa1392240:CDS 60.0%
AGCTCAGTTGGCGGTTGGCA+GGG - tig0021477:60310-60329 Msa1392240:CDS 60.0%
CAGGGCTGAGTTTCGAACCC+CGG - tig0021477:60350-60369 Msa1392240:CDS 60.0%
! GTGGAGAAGTGAGGTGTCCG+GGG + tig0021477:60370-60389 None:intergenic 60.0%
GGTGAGCCAAGGGACACTGA+AGG + tig0021477:61058-61077 None:intergenic 60.0%
!! GTAGCTCGGTTGGTGAGCCA+AGG + tig0021477:61069-61088 None:intergenic 60.0%
CGTTGGAGTCCAACGCTGCC+TGG + tig0021477:61215-61234 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0021477 gene 59524 62315 59524 ID=Msa1392240;Name=Msa1392240
tig0021477 mRNA 59524 62315 59524 ID=Msa1392240-mRNA-1;Parent=Msa1392240;Name=Msa1392240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=177|1|1|1|0.5|0.33|3|308|217
tig0021477 exon 59524 59893 59524 ID=Msa1392240-mRNA-1:exon:13048;Parent=Msa1392240-mRNA-1
tig0021477 exon 60277 60693 60277 ID=Msa1392240-mRNA-1:exon:13047;Parent=Msa1392240-mRNA-1
tig0021477 exon 61964 62315 61964 ID=Msa1392240-mRNA-1:exon:13046;Parent=Msa1392240-mRNA-1
tig0021477 five_prime_UTR 62139 62315 62139 ID=Msa1392240-mRNA-1:five_prime_utr;Parent=Msa1392240-mRNA-1
tig0021477 CDS 61964 62138 61964 ID=Msa1392240-mRNA-1:cds;Parent=Msa1392240-mRNA-1
tig0021477 CDS 60277 60693 60277 ID=Msa1392240-mRNA-1:cds;Parent=Msa1392240-mRNA-1
tig0021477 CDS 59832 59893 59832 ID=Msa1392240-mRNA-1:cds;Parent=Msa1392240-mRNA-1
tig0021477 three_prime_UTR 59524 59831 59524 ID=Msa1392240-mRNA-1:three_prime_utr;Parent=Msa1392240-mRNA-1
Gene Sequence

>Msa1392240

ATGGAGGCAGAGCATGAGAAGAGTGAAGGAGGAGGAGGAGGAGGACTTTATAGCGTGAAAGTTATGACCGATGAACAAATGGAACTTTTAAGACAACAGATATCTGTTTACATCACCATTTCTGATCAGCTTGTTGAGATGCATAAATCTGTTACCACTCAACACGACCTCGCAGGACTGAGACTTGGTAATTTGTACTGTGATCCACTGATGATGGCTTGCTCTGGACACAAGATAACTTCCAGGCAGCGTTGGACTCCAACGCCTATCCAGCTTCAAATACTTGAGCGTATTTTCGATGAAGGCAATGGCACTCCCACCAAACAGAAGATCAAAGACATAACCATTGAACTAGGGCAACACGGTCAAATATCCGAGACTAATGTTTATAATTGGTTCCAGAACAGAAGAGCTCGTTCAAAGCGCAAGCAATCATCTGTTACTGCAGGAAATCATGCAGAGCCAGAGGCAGACACAGAAGTTGAGTCTCCAAAAGAGAACAAAACATGTGAAGAAAGCGATCTAGTTCAGTTCTTTGAGAGTTTATCACCTCATCGGGTCAAGGATATGTACATTCAGAGTCCTGACATAGGATTTGAGCACTTGTTGGGAAAAATTGAAGTTGCAGGCTGCTATAATTCTTACTTTCTTTGA

Protein sequence

>Msa1392240

MEAEHEKSEGGGGGGLYSVKVMTDEQMELLRQQISVYITISDQLVEMHKSVTTQHDLAGLRLGNLYCDPLMMACSGHKITSRQRWTPTPIQLQILERIFDEGNGTPTKQKIKDITIELGQHGQISETNVYNWFQNRRARSKRKQSSVTAGNHAEPEADTEVESPKENKTCEESDLVQFFESLSPHRVKDMYIQSPDIGFEHLLGKIEVAGCYNSYFL*