Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903990 | XP_003618437.1 | 94.231 | 520 | 29 | 1 | 1 | 520 | 1 | 519 | 0.0 | 933 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903990 | sp|Q9FLD5|ASD_ARATH | 62.391 | 460 | 163 | 5 | 5 | 457 | 4 | 460 | 0.0 | 587 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002460 | Msa0903990 | 0.822657 | 2.107017e-53 | -8.615850e-47 |
| Msa0042550 | Msa0903990 | 0.801836 | 7.460253e-49 | -8.615850e-47 |
| Msa0622170 | Msa0903990 | -0.817927 | 2.558008e-52 | -8.615850e-47 |
| Msa0661650 | Msa0903990 | 0.803477 | 3.421017e-49 | -8.615850e-47 |
| Msa0662560 | Msa0903990 | 0.805694 | 1.179530e-49 | -8.615850e-47 |
| Msa0662570 | Msa0903990 | 0.820297 | 7.390302e-53 | -8.615850e-47 |
| Msa0688070 | Msa0903990 | 0.821734 | 3.448500e-53 | -8.615850e-47 |
| Msa0717020 | Msa0903990 | 0.806274 | 8.908436e-50 | -8.615850e-47 |
| Msa0779320 | Msa0903990 | 0.804619 | 1.980698e-49 | -8.615850e-47 |
| Msa0814710 | Msa0903990 | 0.823384 | 1.426238e-53 | -8.615850e-47 |
| Msa0840380 | Msa0903990 | 0.804055 | 2.595605e-49 | -8.615850e-47 |
| Msa0147510 | Msa0903990 | 0.805862 | 1.087502e-49 | -8.615850e-47 |
| Msa0198640 | Msa0903990 | 0.804045 | 2.607473e-49 | -8.615850e-47 |
| Msa0229590 | Msa0903990 | 0.813748 | 2.187573e-51 | -8.615850e-47 |
| Msa0414650 | Msa0903990 | 0.815567 | 8.654087e-52 | -8.615850e-47 |
| Msa0428080 | Msa0903990 | 0.802249 | 6.135714e-49 | -8.615850e-47 |
| Msa0431060 | Msa0903990 | 0.802205 | 6.265580e-49 | -8.615850e-47 |
| Msa0436760 | Msa0903990 | 0.807696 | 4.456494e-50 | -8.615850e-47 |
| Msa0464100 | Msa0903990 | 0.801416 | 9.099270e-49 | -8.615850e-47 |
| Msa0464120 | Msa0903990 | 0.802397 | 5.720593e-49 | -8.615850e-47 |
| Msa0267370 | Msa0903990 | 0.805471 | 1.314049e-49 | -8.615850e-47 |
| Msa0321080 | Msa0903990 | 0.806089 | 9.741492e-50 | -8.615850e-47 |
| Msa0340450 | Msa0903990 | 0.800977 | 1.118899e-48 | -8.615850e-47 |
| Msa0363790 | Msa0903990 | 0.803081 | 4.132049e-49 | -8.615850e-47 |
| Msa0486690 | Msa0903990 | 0.809225 | 2.102136e-50 | -8.615850e-47 |
| Msa0490380 | Msa0903990 | 0.812856 | 3.435392e-51 | -8.615850e-47 |
| Msa0526070 | Msa0903990 | -0.826922 | 2.079203e-54 | -8.615850e-47 |
| Msa0555720 | Msa0903990 | 0.801771 | 7.692900e-49 | -8.615850e-47 |
| Msa0559160 | Msa0903990 | 0.805042 | 1.615935e-49 | -8.615850e-47 |
| Msa0870830 | Msa0903990 | 0.892389 | 1.661289e-74 | -8.615850e-47 |
| Msa0870840 | Msa0903990 | 0.802787 | 4.752450e-49 | -8.615850e-47 |
| Msa0903990 | Msa0904000 | 0.844992 | 5.361756e-59 | -8.615850e-47 |
| Msa0903990 | Msa0904010 | 0.805692 | 1.180988e-49 | -8.615850e-47 |
| Msa0903990 | Msa0926890 | 0.803544 | 3.313651e-49 | -8.615850e-47 |
| Msa0903990 | Msa0926900 | 0.805417 | 1.348394e-49 | -8.615850e-47 |
| Msa0903990 | Msa0936530 | 0.890329 | 1.087188e-73 | -8.615850e-47 |
| Msa0903990 | Msa0936550 | 0.808661 | 2.775859e-50 | -8.615850e-47 |
| Msa0903990 | Msa0936560 | 0.813380 | 2.635841e-51 | -8.615850e-47 |
| Msa0903990 | Msa0960660 | 0.805633 | 1.215010e-49 | -8.615850e-47 |
| Msa0903990 | Msa0973520 | 0.879286 | 1.410277e-69 | -8.615850e-47 |
| Msa0903990 | Msa0973600 | 0.868756 | 5.155068e-66 | -8.615850e-47 |
| Msa0903990 | Msa1000230 | 0.821794 | 3.341219e-53 | -8.615850e-47 |
| Msa0903990 | Msa1039710 | -0.826091 | 3.280837e-54 | -8.615850e-47 |
| Msa0903990 | Msa1084120 | 0.809230 | 2.097154e-50 | -8.615850e-47 |
| Msa0903990 | Msa1163090 | 0.802937 | 4.425134e-49 | -8.615850e-47 |
| Msa0903990 | Msa1198770 | 0.807644 | 4.571026e-50 | -8.615850e-47 |
| Msa0903990 | Msa1201200 | 0.818272 | 2.137939e-52 | -8.615850e-47 |
| Msa0903990 | Msa1207220 | 0.818672 | 1.734305e-52 | -8.615850e-47 |
| Msa0903990 | Msa1224480 | 0.822418 | 2.394838e-53 | -8.615850e-47 |
| Msa0903990 | Msa1246700 | 0.808918 | 2.445611e-50 | -8.615850e-47 |
| Msa0903990 | Msa1252260 | 0.810300 | 1.234579e-50 | -8.615850e-47 |
| Msa0903990 | Msa1304890 | -0.830656 | 2.597005e-55 | -8.615850e-47 |
| Msa0903990 | Msa1341520 | 0.802348 | 5.855787e-49 | -8.615850e-47 |
| Msa0903990 | Msa1365270 | 0.810401 | 1.174034e-50 | -8.615850e-47 |
| Msa0903990 | Msa1374470 | 0.802211 | 6.246863e-49 | -8.615850e-47 |
| Msa0903990 | Msa1381530 | 0.801705 | 7.935885e-49 | -8.615850e-47 |
| Msa0903990 | Msa1383100 | 0.807653 | 4.550494e-50 | -8.615850e-47 |
| Msa0903990 | Msa1394380 | 0.808086 | 3.680924e-50 | -8.615850e-47 |
| Msa0903990 | Msa1398880 | 0.805110 | 1.563339e-49 | -8.615850e-47 |
| Msa0903990 | Msa1398890 | 0.816723 | 4.773844e-52 | -8.615850e-47 |
| Msa0903990 | Msa1424750 | 0.807171 | 5.758140e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903990 | MtrunA17_Chr6g0452371 | 94.231 | 520 | 29 | 1 | 1 | 520 | 1 | 519 | 0.0 | 933 |
| Msa0903990 | MtrunA17_Chr6g0452391 | 86.100 | 518 | 71 | 1 | 3 | 520 | 1 | 517 | 0.0 | 849 |
| Msa0903990 | MtrunA17_Chr6g0452451 | 71.236 | 518 | 129 | 5 | 1 | 505 | 1 | 511 | 0.0 | 710 |
| Msa0903990 | MtrunA17_Chr6g0452401 | 75.000 | 452 | 94 | 3 | 25 | 461 | 1 | 448 | 0.0 | 685 |
| Msa0903990 | MtrunA17_Chr7g0215951 | 66.955 | 463 | 144 | 4 | 5 | 461 | 1 | 460 | 0.0 | 639 |
| Msa0903990 | MtrunA17_Chr6g0466811 | 67.134 | 499 | 140 | 5 | 12 | 509 | 21 | 496 | 0.0 | 638 |
| Msa0903990 | MtrunA17_Chr4g0059811 | 57.738 | 504 | 195 | 8 | 7 | 495 | 8 | 508 | 0.0 | 585 |
| Msa0903990 | MtrunA17_Chr1g0155131 | 59.205 | 478 | 178 | 5 | 3 | 477 | 1 | 464 | 0.0 | 572 |
| Msa0903990 | MtrunA17_Chr6g0452411 | 72.464 | 414 | 95 | 4 | 105 | 505 | 1 | 408 | 0.0 | 565 |
| Msa0903990 | MtrunA17_Chr2g0292561 | 57.872 | 470 | 181 | 5 | 7 | 472 | 8 | 464 | 0.0 | 551 |
| Msa0903990 | MtrunA17_Chr1g0155121 | 52.155 | 464 | 206 | 5 | 7 | 460 | 3 | 460 | 1.04e-170 | 491 |
| Msa0903990 | MtrunA17_Chr6g0452361 | 81.356 | 295 | 33 | 2 | 215 | 509 | 1 | 273 | 2.05e-150 | 431 |
| Msa0903990 | MtrunA17_Chr6g0452481 | 69.811 | 318 | 79 | 3 | 194 | 511 | 2 | 302 | 3.82e-141 | 409 |
| Msa0903990 | MtrunA17_Chr4g0072491 | 44.470 | 443 | 234 | 5 | 7 | 441 | 3 | 441 | 4.66e-126 | 378 |
| Msa0903990 | MtrunA17_Chr5g0404651 | 38.990 | 495 | 260 | 8 | 8 | 490 | 13 | 477 | 1.23e-117 | 356 |
| Msa0903990 | MtrunA17_Chr2g0315991 | 39.406 | 505 | 247 | 13 | 12 | 508 | 13 | 466 | 6.97e-109 | 332 |
| Msa0903990 | MtrunA17_Chr2g0315921 | 40.426 | 470 | 229 | 12 | 14 | 469 | 14 | 446 | 7.10e-109 | 332 |
| Msa0903990 | MtrunA17_Chr2g0315911 | 40.041 | 482 | 235 | 13 | 14 | 482 | 16 | 456 | 4.68e-107 | 327 |
| Msa0903990 | MtrunA17_Chr2g0308991 | 40.181 | 443 | 239 | 9 | 5 | 441 | 4 | 426 | 6.89e-107 | 329 |
| Msa0903990 | MtrunA17_Chr8g0372701 | 38.075 | 478 | 265 | 9 | 8 | 481 | 23 | 473 | 7.79e-107 | 328 |
| Msa0903990 | MtrunA17_Chr2g0315971 | 40.821 | 463 | 234 | 9 | 12 | 469 | 7 | 434 | 2.18e-105 | 331 |
| Msa0903990 | MtrunA17_Chr2g0315971 | 48.936 | 282 | 116 | 5 | 180 | 461 | 450 | 703 | 7.71e-84 | 275 |
| Msa0903990 | MtrunA17_Chr2g0315981 | 39.167 | 480 | 257 | 9 | 12 | 485 | 7 | 457 | 3.29e-105 | 322 |
| Msa0903990 | MtrunA17_Chr2g0316041 | 41.565 | 409 | 207 | 8 | 65 | 469 | 1 | 381 | 7.81e-100 | 308 |
| Msa0903990 | MtrunA17_Chr5g0404661 | 37.603 | 484 | 267 | 12 | 3 | 472 | 19 | 481 | 2.66e-95 | 298 |
| Msa0903990 | MtrunA17_Chr2g0316021 | 35.833 | 480 | 238 | 9 | 12 | 487 | 7 | 420 | 2.54e-89 | 281 |
| Msa0903990 | MtrunA17_Chr3g0134831 | 45.364 | 302 | 147 | 5 | 162 | 462 | 4 | 288 | 8.36e-85 | 264 |
| Msa0903990 | MtrunA17_Chr3g0127381 | 30.556 | 468 | 256 | 12 | 8 | 461 | 2 | 414 | 3.39e-65 | 219 |
| Msa0903990 | MtrunA17_Chr7g0276031 | 33.168 | 404 | 208 | 11 | 63 | 461 | 59 | 405 | 5.35e-64 | 215 |
| Msa0903990 | MtrunA17_Chr8g0346371 | 32.010 | 403 | 226 | 10 | 40 | 438 | 35 | 393 | 1.60e-61 | 209 |
| Msa0903990 | MtrunA17_Chr6g0452351 | 58.678 | 121 | 49 | 1 | 11 | 130 | 20 | 140 | 6.13e-44 | 152 |
| Msa0903990 | MtrunA17_Chr1g0148871 | 60.741 | 135 | 48 | 3 | 328 | 460 | 2 | 133 | 9.00e-42 | 147 |
| Msa0903990 | MtrunA17_Chr5g0404671 | 54.128 | 109 | 46 | 2 | 355 | 462 | 1 | 106 | 3.48e-32 | 121 |
| Msa0903990 | MtrunA17_Chr5g0404681 | 41.935 | 124 | 62 | 1 | 146 | 269 | 39 | 152 | 1.27e-29 | 114 |
| Msa0903990 | MtrunA17_Chr5g0404691 | 38.286 | 175 | 81 | 4 | 289 | 462 | 2 | 150 | 7.00e-24 | 98.2 |
| Msa0903990 | MtrunA17_Chr1g0211521 | 50.926 | 108 | 51 | 2 | 388 | 494 | 5 | 111 | 1.56e-21 | 90.1 |
| Msa0903990 | MtrunA17_Chr1g0192151 | 32.105 | 190 | 96 | 6 | 221 | 401 | 180 | 345 | 3.18e-13 | 71.6 |
| Msa0903990 | MtrunA17_Chr4g0014731 | 32.105 | 190 | 96 | 6 | 221 | 401 | 181 | 346 | 3.37e-13 | 71.6 |
| Msa0903990 | MtrunA17_Chr8g0362771 | 26.019 | 319 | 175 | 11 | 189 | 480 | 218 | 502 | 2.72e-12 | 69.3 |
| Msa0903990 | MtrunA17_Chr6g0476861 | 27.302 | 315 | 183 | 14 | 188 | 480 | 177 | 467 | 5.23e-12 | 68.6 |
| Msa0903990 | MtrunA17_Chr7g0262801 | 31.138 | 167 | 84 | 6 | 235 | 393 | 214 | 357 | 5.10e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903990 | AT5G40010.1 | 62.391 | 460 | 163 | 5 | 5 | 457 | 4 | 460 | 0.0 | 587 |
| Msa0903990 | AT3G28580.1 | 60.521 | 461 | 165 | 8 | 5 | 457 | 4 | 455 | 0.0 | 547 |
| Msa0903990 | AT3G28510.1 | 59.219 | 461 | 186 | 2 | 6 | 466 | 5 | 463 | 0.0 | 531 |
| Msa0903990 | AT3G28580.2 | 57.205 | 458 | 163 | 7 | 5 | 457 | 4 | 433 | 3.95e-175 | 502 |
| Msa0903990 | AT3G28540.2 | 53.996 | 513 | 214 | 8 | 6 | 513 | 5 | 500 | 4.89e-166 | 480 |
| Msa0903990 | AT3G28540.1 | 53.996 | 513 | 214 | 8 | 6 | 513 | 5 | 500 | 6.50e-166 | 480 |
| Msa0903990 | AT3G28610.1 | 50.728 | 481 | 178 | 10 | 10 | 465 | 4 | 450 | 8.53e-164 | 473 |
| Msa0903990 | AT3G28600.1 | 50.939 | 479 | 192 | 8 | 1 | 465 | 1 | 450 | 5.19e-162 | 469 |
| Msa0903990 | AT5G40000.1 | 48.361 | 488 | 209 | 9 | 3 | 474 | 2 | 462 | 1.57e-154 | 449 |
| Msa0903990 | AT3G28520.1 | 55.679 | 449 | 185 | 6 | 17 | 460 | 2 | 441 | 1.33e-152 | 445 |
| Msa0903990 | AT3G28600.2 | 48.017 | 479 | 167 | 8 | 1 | 465 | 1 | 411 | 1.30e-143 | 420 |
| Msa0903990 | AT3G28570.1 | 47.009 | 468 | 197 | 8 | 10 | 464 | 7 | 436 | 6.93e-143 | 419 |
| Msa0903990 | AT3G28570.2 | 47.009 | 468 | 197 | 8 | 10 | 464 | 14 | 443 | 7.68e-143 | 419 |
| Msa0903990 | AT5G57480.1 | 39.216 | 510 | 282 | 8 | 7 | 503 | 3 | 497 | 3.83e-125 | 376 |
| Msa0903990 | AT4G25835.1 | 41.053 | 475 | 267 | 7 | 7 | 477 | 3 | 468 | 1.63e-123 | 371 |
| Msa0903990 | AT4G30250.2 | 39.916 | 476 | 264 | 8 | 3 | 466 | 1 | 466 | 8.53e-114 | 347 |
| Msa0903990 | AT4G30250.1 | 39.873 | 474 | 263 | 8 | 5 | 466 | 1 | 464 | 3.75e-113 | 345 |
| Msa0903990 | AT3G50940.1 | 40.089 | 449 | 224 | 9 | 28 | 471 | 43 | 451 | 3.85e-110 | 335 |
| Msa0903990 | AT3G50930.1 | 38.340 | 506 | 273 | 10 | 20 | 519 | 73 | 545 | 5.87e-109 | 336 |
| Msa0903990 | AT2G18193.1 | 39.583 | 480 | 253 | 9 | 13 | 489 | 19 | 464 | 2.58e-107 | 329 |
| Msa0903990 | AT4G05380.1 | 39.278 | 471 | 253 | 10 | 4 | 468 | 11 | 454 | 6.00e-103 | 317 |
| Msa0903990 | AT5G17740.1 | 36.452 | 513 | 278 | 12 | 6 | 495 | 11 | 498 | 1.09e-102 | 319 |
| Msa0903990 | AT5G17730.1 | 36.382 | 492 | 266 | 12 | 5 | 482 | 10 | 468 | 3.23e-101 | 313 |
| Msa0903990 | AT5G17760.1 | 40.225 | 445 | 212 | 9 | 68 | 487 | 72 | 487 | 1.24e-100 | 312 |
| Msa0903990 | AT2G18190.1 | 38.478 | 460 | 252 | 9 | 8 | 464 | 15 | 446 | 8.79e-100 | 310 |
| Msa0903990 | AT1G43910.1 | 38.901 | 473 | 259 | 10 | 4 | 471 | 10 | 457 | 5.27e-98 | 305 |
| Msa0903990 | AT5G17750.1 | 33.643 | 431 | 225 | 8 | 6 | 426 | 11 | 390 | 3.20e-82 | 261 |
| Msa0903990 | AT2G46620.1 | 31.828 | 443 | 253 | 7 | 5 | 442 | 1 | 399 | 1.50e-70 | 234 |
| Msa0903990 | AT5G17760.2 | 37.405 | 262 | 138 | 4 | 68 | 314 | 72 | 322 | 1.51e-51 | 179 |
| Msa0903990 | AT3G28560.1 | 42.661 | 218 | 115 | 4 | 6 | 221 | 5 | 214 | 3.11e-48 | 167 |
| Msa0903990 | AT3G29800.1 | 30.481 | 374 | 205 | 9 | 143 | 508 | 104 | 430 | 3.83e-46 | 167 |
| Msa0903990 | AT4G05340.1 | 51.042 | 96 | 41 | 1 | 317 | 412 | 4 | 93 | 1.88e-23 | 95.1 |
| Msa0903990 | AT1G09100.1 | 32.632 | 190 | 95 | 6 | 221 | 401 | 180 | 345 | 8.14e-14 | 73.9 |
| Msa0903990 | AT3G05530.1 | 32.105 | 190 | 96 | 6 | 221 | 401 | 181 | 346 | 3.17e-13 | 72.0 |
| Msa0903990 | AT2G20140.1 | 31.737 | 167 | 83 | 6 | 235 | 393 | 212 | 355 | 2.77e-11 | 66.2 |
| Msa0903990 | AT4G29040.1 | 31.737 | 167 | 83 | 6 | 235 | 393 | 212 | 355 | 5.76e-11 | 65.1 |
Find 69 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGCAAGGTAACTCTTTC+GGG | 0.182477 | 6_2:-1414910 | Msa0903990:CDS |
| AAACGTGGTTATCTACTTTA+TGG | 0.185533 | 6_2:-1415204 | Msa0903990:CDS |
| TTTGAGCATCCTGCAAGATT+TGG | 0.271233 | 6_2:-1415327 | Msa0903990:CDS |
| CAAAGTATGAAGATGGGAAT+TGG | 0.285135 | 6_2:-1415942 | None:intergenic |
| ATAATTCATGAAACTTTATA+TGG | 0.285949 | 6_2:+1415778 | None:intergenic |
| TGAAAGCAAGGTAACTCTTT+CGG | 0.316114 | 6_2:-1414911 | Msa0903990:CDS |
| CAAATAACCCTAGTAGTAAT+TGG | 0.316335 | 6_2:-1415386 | Msa0903990:CDS |
| AAAGTATGAAGATGGGAATT+GGG | 0.332092 | 6_2:-1415941 | None:intergenic |
| TGAGGAGGAAGCAAAGAAAA+AGG | 0.337182 | 6_2:-1414536 | Msa0903990:CDS |
| AGAAAATATCTACGAAGGTT+AGG | 0.368317 | 6_2:+1415843 | None:intergenic |
| GCTAGGTTTCCAAATCTTGC+AGG | 0.369566 | 6_2:+1415318 | None:intergenic |
| TCCAATTATTGAAAAGTTGT+TGG | 0.390561 | 6_2:-1414680 | Msa0903990:CDS |
| TGAAACTTTATATGGATGTA+TGG | 0.395728 | 6_2:+1415786 | None:intergenic |
| AAAGAATATTATGCTAAAGT+TGG | 0.397678 | 6_2:-1415237 | Msa0903990:CDS |
| CCAATTATTGAAAAGTTGTT+GGG | 0.400795 | 6_2:-1414679 | Msa0903990:CDS |
| AGTTCAATGGAGTCAAAGTT+TGG | 0.406209 | 6_2:-1415596 | Msa0903990:CDS |
| TCTTGAATTAACAACTGTTA+AGG | 0.414016 | 6_2:-1415112 | Msa0903990:CDS |
| CTTTATGGTCCACCAGGAAC+TGG | 0.417256 | 6_2:-1415189 | Msa0903990:CDS |
| TGGGCAAAGGAAGAAGAAAA+AGG | 0.419447 | 6_2:-1415001 | Msa0903990:CDS |
| AACATTTCAAAGTATGAAGA+TGG | 0.422358 | 6_2:-1415949 | None:intergenic |
| ATTGATTCAAGAGGAAGAAA+AGG | 0.424121 | 6_2:-1414467 | Msa0903990:CDS |
| CAACACATGTTGAATGTAAG+AGG | 0.425064 | 6_2:+1415458 | None:intergenic |
| CTCTTACATTCAACATGTGT+TGG | 0.428090 | 6_2:-1415457 | Msa0903990:CDS |
| AAATCTTCAGAGATTGACTT+TGG | 0.428448 | 6_2:+1414613 | None:intergenic |
| GATTGTTCTCTCGATCTCAC+TGG | 0.438810 | 6_2:-1415021 | Msa0903990:CDS |
| AGTTTGCACTAAGATATGTT+TGG | 0.446804 | 6_2:+1415715 | None:intergenic |
| ATTCAACATGTGTTGGATGA+AGG | 0.454671 | 6_2:-1415450 | Msa0903990:CDS |
| GGAAGAAAAGGTTAAGGTTG+AGG | 0.454899 | 6_2:-1414455 | Msa0903990:CDS |
| GATCTTCTTAAGTTCAAGAA+AGG | 0.458025 | 6_2:-1415261 | Msa0903990:CDS |
| ATAAAGTTTCATGAATTATC+CGG | 0.459020 | 6_2:-1415774 | Msa0903990:CDS |
| AGATGGGAATTGGGGAACTA+TGG | 0.460698 | 6_2:-1415932 | Msa0903990:CDS |
| TCAAGAGGAAGAAAAGGTTA+AGG | 0.472275 | 6_2:-1414461 | Msa0903990:CDS |
| AACTTGATCCTGCTCTCATA+AGG | 0.478108 | 6_2:-1414807 | Msa0903990:CDS |
| CTTCCTCTCCTTATGAGAGC+AGG | 0.479636 | 6_2:+1414799 | None:intergenic |
| ATGCTAAAGTTGGAAAAGCT+TGG | 0.482796 | 6_2:-1415227 | Msa0903990:CDS |
| ACTTTGTTTGAGACGTTCAC+CGG | 0.494101 | 6_2:+1415755 | None:intergenic |
| AAGCTATTATGAGCAAGAAT+AGG | 0.495148 | 6_2:-1415425 | Msa0903990:CDS |
| AGAAGAGAAGAATGAAAGCA+AGG | 0.502797 | 6_2:-1414923 | Msa0903990:CDS |
| ATTTGCTATAGCTGAAATCA+TGG | 0.514927 | 6_2:+1415158 | None:intergenic |
| GAGAATGGTGTCGAAGAGAA+TGG | 0.523523 | 6_2:-1414421 | Msa0903990:CDS |
| AAATTCTCAGCAACATCAGC+AGG | 0.526229 | 6_2:+1414640 | None:intergenic |
| GAAACAAGAATTGATTCAAG+AGG | 0.527978 | 6_2:-1414476 | Msa0903990:CDS |
| GAAATCATAGATGAGTTCAA+TGG | 0.530945 | 6_2:-1415609 | Msa0903990:CDS |
| CTCTCGATCTCACTGGGCAA+AGG | 0.533851 | 6_2:-1415014 | Msa0903990:CDS |
| TCTCATAAGGAGAGGAAGAA+TGG | 0.534399 | 6_2:-1414794 | Msa0903990:CDS |
| AAATATCTACGAAGGTTAGG+TGG | 0.536970 | 6_2:+1415846 | None:intergenic |
| GACTTTGATTCAATTTCTTG+AGG | 0.542494 | 6_2:-1414575 | Msa0903990:CDS |
| TAACCCTAGTAGTAATTGGT+GGG | 0.547641 | 6_2:-1415382 | Msa0903990:CDS |
| ATTGTTCTCTCGATCTCACT+GGG | 0.548831 | 6_2:-1415020 | Msa0903990:CDS |
| GATGGAATTTGGTCAGCTTG+TGG | 0.549571 | 6_2:-1414871 | Msa0903990:CDS |
| AAAACCACTTGTTCTTAGCA+TGG | 0.557204 | 6_2:-1415643 | Msa0903990:CDS |
| GTTGGAAAAGCTTGGAAACG+TGG | 0.566291 | 6_2:-1415219 | Msa0903990:CDS |
| TGATGAGAATGATGAAAAGA+AGG | 0.571153 | 6_2:-1414968 | Msa0903990:CDS |
| AACCCTAGTAGTAATTGGTG+GGG | 0.572012 | 6_2:-1415381 | Msa0903990:CDS |
| TCATCCATGCTAAGAACAAG+TGG | 0.573558 | 6_2:+1415639 | None:intergenic |
| AATATCTACGAAGGTTAGGT+GGG | 0.582041 | 6_2:+1415847 | None:intergenic |
| AAGTATGAAGATGGGAATTG+GGG | 0.585836 | 6_2:-1415940 | None:intergenic |
| GAGAATGGTGTGAAAGAGAA+TGG | 0.590653 | 6_2:-1414406 | Msa0903990:CDS |
| TCAATGGAGTCAAAGTTTGG+TGG | 0.596166 | 6_2:-1415593 | Msa0903990:CDS |
| ACATTTCAAAGTATGAAGAT+GGG | 0.598757 | 6_2:-1415948 | None:intergenic |
| AAGATTTGGAAACCTAGCTA+TGG | 0.607202 | 6_2:-1415313 | Msa0903990:CDS |
| GGATGAGGAAGCAAAGCTCA+AGG | 0.616773 | 6_2:-1414509 | Msa0903990:CDS |
| TATCTACTTTATGGTCCACC+AGG | 0.617929 | 6_2:-1415195 | Msa0903990:CDS |
| ACCCTAGTAGTAATTGGTGG+GGG | 0.617964 | 6_2:-1415380 | Msa0903990:CDS |
| GGGGAACTATGGTCACAACT+AGG | 0.620126 | 6_2:-1415921 | Msa0903990:CDS |
| ATAACCCTAGTAGTAATTGG+TGG | 0.620183 | 6_2:-1415383 | Msa0903990:CDS |
| GTCACAACTAGGTTCAATCA+CGG | 0.654145 | 6_2:-1415910 | Msa0903990:CDS |
| GATCCTGCTCTCATAAGGAG+AGG | 0.663048 | 6_2:-1414802 | Msa0903990:CDS |
| GGTCAGCTTGTGGATCAGAG+AGG | 0.714357 | 6_2:-1414861 | Msa0903990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTCATGAAACTTTATA+TGG | + | chr6_2:1414554-1414573 | None:intergenic | 15.0% |
| !! | ATAATTCATGAAACTTTATA+TGG | + | chr6_2:1414554-1414573 | None:intergenic | 15.0% |
| !!! | ATTTTAGAAAATATCTACGA+AGG | + | chr6_2:1414494-1414513 | None:intergenic | 20.0% |
| !! | ATAAAGTTTCATGAATTATC+CGG | - | chr6_2:1414555-1414574 | Msa0903990:CDS | 20.0% |
| !! | AAAGAATATTATGCTAAAGT+TGG | - | chr6_2:1415092-1415111 | Msa0903990:CDS | 20.0% |
| !!! | TGAATTTTATTGATGGAATT+TGG | - | chr6_2:1415447-1415466 | Msa0903990:CDS | 20.0% |
| !!! | AATTTTCACAACAAATTTTG+TGG | - | chr6_2:1415496-1415515 | Msa0903990:CDS | 20.0% |
| !!! | ATTTTAGAAAATATCTACGA+AGG | + | chr6_2:1414494-1414513 | None:intergenic | 20.0% |
| !! | ATAAAGTTTCATGAATTATC+CGG | - | chr6_2:1414555-1414574 | Msa0903990:CDS | 20.0% |
| !! | AAAGAATATTATGCTAAAGT+TGG | - | chr6_2:1415092-1415111 | Msa0903990:CDS | 20.0% |
| !!! | TGAATTTTATTGATGGAATT+TGG | - | chr6_2:1415447-1415466 | Msa0903990:CDS | 20.0% |
| !!! | AATTTTCACAACAAATTTTG+TGG | - | chr6_2:1415496-1415515 | Msa0903990:CDS | 20.0% |
| ! | TGGGAAAAATTTATCAAACA+TGG | + | chr6_2:1414466-1414485 | None:intergenic | 25.0% |
| ! | TGAAACTTTATATGGATGTA+TGG | + | chr6_2:1414546-1414565 | None:intergenic | 25.0% |
| !! | AGAAAATGATTGTGATTTTG+AGG | + | chr6_2:1414778-1414797 | None:intergenic | 25.0% |
| !!! | AATCTTTTTTCATCTGAAGT+AGG | + | chr6_2:1414807-1414826 | None:intergenic | 25.0% |
| !!! | AAAATCTCTTGTTTCTTTTC+TGG | + | chr6_2:1415044-1415063 | None:intergenic | 25.0% |
| ! | TCTTGAATTAACAACTGTTA+AGG | - | chr6_2:1415217-1415236 | Msa0903990:CDS | 25.0% |
| !!! | TCTTTTTCAGCTTTCTTAAT+AGG | + | chr6_2:1415389-1415408 | None:intergenic | 25.0% |
| !!! | GGTTTGTTGAATTTTATTGA+TGG | - | chr6_2:1415440-1415459 | Msa0903990:CDS | 25.0% |
| ! | TCCAATTATTGAAAAGTTGT+TGG | - | chr6_2:1415649-1415668 | Msa0903990:CDS | 25.0% |
| ! | CCAATTATTGAAAAGTTGTT+GGG | - | chr6_2:1415650-1415669 | Msa0903990:CDS | 25.0% |
| ! | TCTTGAGGAAAAAAAGAAAA+AGG | - | chr6_2:1415769-1415788 | Msa0903990:CDS | 25.0% |
| ! | TGGGAAAAATTTATCAAACA+TGG | + | chr6_2:1414466-1414485 | None:intergenic | 25.0% |
| ! | TGAAACTTTATATGGATGTA+TGG | + | chr6_2:1414546-1414565 | None:intergenic | 25.0% |
| !! | AGAAAATGATTGTGATTTTG+AGG | + | chr6_2:1414778-1414797 | None:intergenic | 25.0% |
| !!! | AATCTTTTTTCATCTGAAGT+AGG | + | chr6_2:1414807-1414826 | None:intergenic | 25.0% |
| !!! | AAAATCTCTTGTTTCTTTTC+TGG | + | chr6_2:1415044-1415063 | None:intergenic | 25.0% |
| ! | TCTTGAATTAACAACTGTTA+AGG | - | chr6_2:1415217-1415236 | Msa0903990:CDS | 25.0% |
| !!! | TCTTTTTCAGCTTTCTTAAT+AGG | + | chr6_2:1415389-1415408 | None:intergenic | 25.0% |
| !!! | GGTTTGTTGAATTTTATTGA+TGG | - | chr6_2:1415440-1415459 | Msa0903990:CDS | 25.0% |
| ! | TCCAATTATTGAAAAGTTGT+TGG | - | chr6_2:1415649-1415668 | Msa0903990:CDS | 25.0% |
| ! | CCAATTATTGAAAAGTTGTT+GGG | - | chr6_2:1415650-1415669 | Msa0903990:CDS | 25.0% |
| ! | TCTTGAGGAAAAAAAGAAAA+AGG | - | chr6_2:1415769-1415788 | Msa0903990:CDS | 25.0% |
| AGAAAATATCTACGAAGGTT+AGG | + | chr6_2:1414489-1414508 | None:intergenic | 30.0% | |
| AGTTTGCACTAAGATATGTT+TGG | + | chr6_2:1414617-1414636 | None:intergenic | 30.0% | |
| GAAATCATAGATGAGTTCAA+TGG | - | chr6_2:1414720-1414739 | Msa0903990:CDS | 30.0% | |
| !! | AAATGATTGTGATTTTGAGG+TGG | + | chr6_2:1414775-1414794 | None:intergenic | 30.0% |
| AAGCTATTATGAGCAAGAAT+AGG | - | chr6_2:1414904-1414923 | Msa0903990:CDS | 30.0% | |
| CAAATAACCCTAGTAGTAAT+TGG | - | chr6_2:1414943-1414962 | Msa0903990:CDS | 30.0% | |
| GATCTTCTTAAGTTCAAGAA+AGG | - | chr6_2:1415068-1415087 | Msa0903990:CDS | 30.0% | |
| AAACGTGGTTATCTACTTTA+TGG | - | chr6_2:1415125-1415144 | Msa0903990:CDS | 30.0% | |
| !! | ATTTGCTATAGCTGAAATCA+TGG | + | chr6_2:1415174-1415193 | None:intergenic | 30.0% |
| TGATGAGAATGATGAAAAGA+AGG | - | chr6_2:1415361-1415380 | Msa0903990:CDS | 30.0% | |
| ! | TTGTAGCTATCAAGCTTTTA+AGG | - | chr6_2:1415580-1415599 | Msa0903990:CDS | 30.0% |
| ! | CCCAACAACTTTTCAATAAT+TGG | + | chr6_2:1415653-1415672 | None:intergenic | 30.0% |
| ! | AAATCTTCAGAGATTGACTT+TGG | + | chr6_2:1415719-1415738 | None:intergenic | 30.0% |
| GACTTTGATTCAATTTCTTG+AGG | - | chr6_2:1415754-1415773 | Msa0903990:CDS | 30.0% | |
| GGAAAAAAAGAAAAAGGATG+AGG | - | chr6_2:1415775-1415794 | Msa0903990:CDS | 30.0% | |
| AAAAAAGAAAAAGGATGAGG+AGG | - | chr6_2:1415778-1415797 | Msa0903990:CDS | 30.0% | |
| ! | GAAACAAGAATTGATTCAAG+AGG | - | chr6_2:1415853-1415872 | Msa0903990:CDS | 30.0% |
| ! | ATTGATTCAAGAGGAAGAAA+AGG | - | chr6_2:1415862-1415881 | Msa0903990:CDS | 30.0% |
| AGAAAATATCTACGAAGGTT+AGG | + | chr6_2:1414489-1414508 | None:intergenic | 30.0% | |
| AGTTTGCACTAAGATATGTT+TGG | + | chr6_2:1414617-1414636 | None:intergenic | 30.0% | |
| GAAATCATAGATGAGTTCAA+TGG | - | chr6_2:1414720-1414739 | Msa0903990:CDS | 30.0% | |
| !! | AAATGATTGTGATTTTGAGG+TGG | + | chr6_2:1414775-1414794 | None:intergenic | 30.0% |
| AAGCTATTATGAGCAAGAAT+AGG | - | chr6_2:1414904-1414923 | Msa0903990:CDS | 30.0% | |
| CAAATAACCCTAGTAGTAAT+TGG | - | chr6_2:1414943-1414962 | Msa0903990:CDS | 30.0% | |
| GATCTTCTTAAGTTCAAGAA+AGG | - | chr6_2:1415068-1415087 | Msa0903990:CDS | 30.0% | |
| AAACGTGGTTATCTACTTTA+TGG | - | chr6_2:1415125-1415144 | Msa0903990:CDS | 30.0% | |
| !! | ATTTGCTATAGCTGAAATCA+TGG | + | chr6_2:1415174-1415193 | None:intergenic | 30.0% |
| TGATGAGAATGATGAAAAGA+AGG | - | chr6_2:1415361-1415380 | Msa0903990:CDS | 30.0% | |
| ! | TTGTAGCTATCAAGCTTTTA+AGG | - | chr6_2:1415580-1415599 | Msa0903990:CDS | 30.0% |
| ! | CCCAACAACTTTTCAATAAT+TGG | + | chr6_2:1415653-1415672 | None:intergenic | 30.0% |
| ! | AAATCTTCAGAGATTGACTT+TGG | + | chr6_2:1415719-1415738 | None:intergenic | 30.0% |
| GACTTTGATTCAATTTCTTG+AGG | - | chr6_2:1415754-1415773 | Msa0903990:CDS | 30.0% | |
| GGAAAAAAAGAAAAAGGATG+AGG | - | chr6_2:1415775-1415794 | Msa0903990:CDS | 30.0% | |
| AAAAAAGAAAAAGGATGAGG+AGG | - | chr6_2:1415778-1415797 | Msa0903990:CDS | 30.0% | |
| ! | GAAACAAGAATTGATTCAAG+AGG | - | chr6_2:1415853-1415872 | Msa0903990:CDS | 30.0% |
| ! | ATTGATTCAAGAGGAAGAAA+AGG | - | chr6_2:1415862-1415881 | Msa0903990:CDS | 30.0% |
| AATATCTACGAAGGTTAGGT+GGG | + | chr6_2:1414485-1414504 | None:intergenic | 35.0% | |
| AAATATCTACGAAGGTTAGG+TGG | + | chr6_2:1414486-1414505 | None:intergenic | 35.0% | |
| ! | TGCTAAGAACAAGTGGTTTT+TGG | + | chr6_2:1414686-1414705 | None:intergenic | 35.0% |
| AAAACCACTTGTTCTTAGCA+TGG | - | chr6_2:1414686-1414705 | Msa0903990:CDS | 35.0% | |
| AGTTCAATGGAGTCAAAGTT+TGG | - | chr6_2:1414733-1414752 | Msa0903990:CDS | 35.0% | |
| !! | ATGCTTTTTGTGGAAGGTTA+GGG | + | chr6_2:1414835-1414854 | None:intergenic | 35.0% |
| CAACACATGTTGAATGTAAG+AGG | + | chr6_2:1414874-1414893 | None:intergenic | 35.0% | |
| CTCTTACATTCAACATGTGT+TGG | - | chr6_2:1414872-1414891 | Msa0903990:CDS | 35.0% | |
| ATTCAACATGTGTTGGATGA+AGG | - | chr6_2:1414879-1414898 | Msa0903990:CDS | 35.0% | |
| ATAACCCTAGTAGTAATTGG+TGG | - | chr6_2:1414946-1414965 | Msa0903990:CDS | 35.0% | |
| TAACCCTAGTAGTAATTGGT+GGG | - | chr6_2:1414947-1414966 | Msa0903990:CDS | 35.0% | |
| AAGATTTGGAAACCTAGCTA+TGG | - | chr6_2:1415016-1415035 | Msa0903990:CDS | 35.0% | |
| ATGCTAAAGTTGGAAAAGCT+TGG | - | chr6_2:1415102-1415121 | Msa0903990:CDS | 35.0% | |
| AGAAGAGAAGAATGAAAGCA+AGG | - | chr6_2:1415406-1415425 | Msa0903990:CDS | 35.0% | |
| TGAAAGCAAGGTAACTCTTT+CGG | - | chr6_2:1415418-1415437 | Msa0903990:CDS | 35.0% | |
| AAAGAAAAAGGTAGAGGATG+AGG | - | chr6_2:1415805-1415824 | Msa0903990:CDS | 35.0% | |
| TCAAGAGGAAGAAAAGGTTA+AGG | - | chr6_2:1415868-1415887 | Msa0903990:CDS | 35.0% | |
| TAAGGTTGAGGAAAAAGTGA+AGG | - | chr6_2:1415886-1415905 | Msa0903990:CDS | 35.0% | |
| AATATCTACGAAGGTTAGGT+GGG | + | chr6_2:1414485-1414504 | None:intergenic | 35.0% | |
| AAATATCTACGAAGGTTAGG+TGG | + | chr6_2:1414486-1414505 | None:intergenic | 35.0% | |
| ! | TGCTAAGAACAAGTGGTTTT+TGG | + | chr6_2:1414686-1414705 | None:intergenic | 35.0% |
| AAAACCACTTGTTCTTAGCA+TGG | - | chr6_2:1414686-1414705 | Msa0903990:CDS | 35.0% | |
| AGTTCAATGGAGTCAAAGTT+TGG | - | chr6_2:1414733-1414752 | Msa0903990:CDS | 35.0% | |
| !! | ATGCTTTTTGTGGAAGGTTA+GGG | + | chr6_2:1414835-1414854 | None:intergenic | 35.0% |
| CAACACATGTTGAATGTAAG+AGG | + | chr6_2:1414874-1414893 | None:intergenic | 35.0% | |
| CTCTTACATTCAACATGTGT+TGG | - | chr6_2:1414872-1414891 | Msa0903990:CDS | 35.0% | |
| ATTCAACATGTGTTGGATGA+AGG | - | chr6_2:1414879-1414898 | Msa0903990:CDS | 35.0% | |
| ATAACCCTAGTAGTAATTGG+TGG | - | chr6_2:1414946-1414965 | Msa0903990:CDS | 35.0% | |
| TAACCCTAGTAGTAATTGGT+GGG | - | chr6_2:1414947-1414966 | Msa0903990:CDS | 35.0% | |
| AAGATTTGGAAACCTAGCTA+TGG | - | chr6_2:1415016-1415035 | Msa0903990:CDS | 35.0% | |
| ATGCTAAAGTTGGAAAAGCT+TGG | - | chr6_2:1415102-1415121 | Msa0903990:CDS | 35.0% | |
| AGAAGAGAAGAATGAAAGCA+AGG | - | chr6_2:1415406-1415425 | Msa0903990:CDS | 35.0% | |
| TGAAAGCAAGGTAACTCTTT+CGG | - | chr6_2:1415418-1415437 | Msa0903990:CDS | 35.0% | |
| AAAGAAAAAGGTAGAGGATG+AGG | - | chr6_2:1415805-1415824 | Msa0903990:CDS | 35.0% | |
| TCAAGAGGAAGAAAAGGTTA+AGG | - | chr6_2:1415868-1415887 | Msa0903990:CDS | 35.0% | |
| TAAGGTTGAGGAAAAAGTGA+AGG | - | chr6_2:1415886-1415905 | Msa0903990:CDS | 35.0% | |
| GTCACAACTAGGTTCAATCA+CGG | - | chr6_2:1414419-1414438 | Msa0903990:CDS | 40.0% | |
| ! | ACTTTGTTTGAGACGTTCAC+CGG | + | chr6_2:1414577-1414596 | None:intergenic | 40.0% |
| TCATCCATGCTAAGAACAAG+TGG | + | chr6_2:1414693-1414712 | None:intergenic | 40.0% | |
| TCAATGGAGTCAAAGTTTGG+TGG | - | chr6_2:1414736-1414755 | Msa0903990:CDS | 40.0% | |
| !! | GATGCTTTTTGTGGAAGGTT+AGG | + | chr6_2:1414836-1414855 | None:intergenic | 40.0% |
| !! | TTCACGATGCTTTTTGTGGA+AGG | + | chr6_2:1414841-1414860 | None:intergenic | 40.0% |
| !! | TGAGTTCACGATGCTTTTTG+TGG | + | chr6_2:1414845-1414864 | None:intergenic | 40.0% |
| AACCCTAGTAGTAATTGGTG+GGG | - | chr6_2:1414948-1414967 | Msa0903990:CDS | 40.0% | |
| TTTGAGCATCCTGCAAGATT+TGG | - | chr6_2:1415002-1415021 | Msa0903990:CDS | 40.0% | |
| !!! | TCTTTTCTGGTTCCATAGCT+AGG | + | chr6_2:1415031-1415050 | None:intergenic | 40.0% |
| TATCTACTTTATGGTCCACC+AGG | - | chr6_2:1415134-1415153 | Msa0903990:CDS | 40.0% | |
| ! | ATGGTAGATTTTCCAGTTCC+TGG | + | chr6_2:1415155-1415174 | None:intergenic | 40.0% |
| ATTGTTCTCTCGATCTCACT+GGG | - | chr6_2:1415309-1415328 | Msa0903990:CDS | 40.0% | |
| TGGGCAAAGGAAGAAGAAAA+AGG | - | chr6_2:1415328-1415347 | Msa0903990:CDS | 40.0% | |
| GAAAGCAAGGTAACTCTTTC+GGG | - | chr6_2:1415419-1415438 | Msa0903990:CDS | 40.0% | |
| AACTTGATCCTGCTCTCATA+AGG | - | chr6_2:1415522-1415541 | Msa0903990:CDS | 40.0% | |
| TCTCATAAGGAGAGGAAGAA+TGG | - | chr6_2:1415535-1415554 | Msa0903990:CDS | 40.0% | |
| AAATTCTCAGCAACATCAGC+AGG | + | chr6_2:1415692-1415711 | None:intergenic | 40.0% | |
| TGAGGAGGAAGCAAAGAAAA+AGG | - | chr6_2:1415793-1415812 | Msa0903990:CDS | 40.0% | |
| GGAAGCAAAGAAAAAGGTAG+AGG | - | chr6_2:1415799-1415818 | Msa0903990:CDS | 40.0% | |
| GGAAGAAAAGGTTAAGGTTG+AGG | - | chr6_2:1415874-1415893 | Msa0903990:CDS | 40.0% | |
| GAGGAAAAAGTGAAGGAGAA+TGG | - | chr6_2:1415893-1415912 | Msa0903990:CDS | 40.0% | |
| GAGAATGGTGTGAAAGAGAA+TGG | - | chr6_2:1415923-1415942 | Msa0903990:CDS | 40.0% | |
| GTCACAACTAGGTTCAATCA+CGG | - | chr6_2:1414419-1414438 | Msa0903990:CDS | 40.0% | |
| ! | ACTTTGTTTGAGACGTTCAC+CGG | + | chr6_2:1414577-1414596 | None:intergenic | 40.0% |
| TCATCCATGCTAAGAACAAG+TGG | + | chr6_2:1414693-1414712 | None:intergenic | 40.0% | |
| TCAATGGAGTCAAAGTTTGG+TGG | - | chr6_2:1414736-1414755 | Msa0903990:CDS | 40.0% | |
| !! | GATGCTTTTTGTGGAAGGTT+AGG | + | chr6_2:1414836-1414855 | None:intergenic | 40.0% |
| !! | TTCACGATGCTTTTTGTGGA+AGG | + | chr6_2:1414841-1414860 | None:intergenic | 40.0% |
| !! | TGAGTTCACGATGCTTTTTG+TGG | + | chr6_2:1414845-1414864 | None:intergenic | 40.0% |
| AACCCTAGTAGTAATTGGTG+GGG | - | chr6_2:1414948-1414967 | Msa0903990:CDS | 40.0% | |
| TTTGAGCATCCTGCAAGATT+TGG | - | chr6_2:1415002-1415021 | Msa0903990:CDS | 40.0% | |
| !!! | TCTTTTCTGGTTCCATAGCT+AGG | + | chr6_2:1415031-1415050 | None:intergenic | 40.0% |
| TATCTACTTTATGGTCCACC+AGG | - | chr6_2:1415134-1415153 | Msa0903990:CDS | 40.0% | |
| ! | ATGGTAGATTTTCCAGTTCC+TGG | + | chr6_2:1415155-1415174 | None:intergenic | 40.0% |
| ATTGTTCTCTCGATCTCACT+GGG | - | chr6_2:1415309-1415328 | Msa0903990:CDS | 40.0% | |
| TGGGCAAAGGAAGAAGAAAA+AGG | - | chr6_2:1415328-1415347 | Msa0903990:CDS | 40.0% | |
| GAAAGCAAGGTAACTCTTTC+GGG | - | chr6_2:1415419-1415438 | Msa0903990:CDS | 40.0% | |
| AACTTGATCCTGCTCTCATA+AGG | - | chr6_2:1415522-1415541 | Msa0903990:CDS | 40.0% | |
| TCTCATAAGGAGAGGAAGAA+TGG | - | chr6_2:1415535-1415554 | Msa0903990:CDS | 40.0% | |
| AAATTCTCAGCAACATCAGC+AGG | + | chr6_2:1415692-1415711 | None:intergenic | 40.0% | |
| TGAGGAGGAAGCAAAGAAAA+AGG | - | chr6_2:1415793-1415812 | Msa0903990:CDS | 40.0% | |
| GGAAGCAAAGAAAAAGGTAG+AGG | - | chr6_2:1415799-1415818 | Msa0903990:CDS | 40.0% | |
| GGAAGAAAAGGTTAAGGTTG+AGG | - | chr6_2:1415874-1415893 | Msa0903990:CDS | 40.0% | |
| GAGGAAAAAGTGAAGGAGAA+TGG | - | chr6_2:1415893-1415912 | Msa0903990:CDS | 40.0% | |
| GAGAATGGTGTGAAAGAGAA+TGG | - | chr6_2:1415923-1415942 | Msa0903990:CDS | 40.0% | |
| AGATGGGAATTGGGGAACTA+TGG | - | chr6_2:1414397-1414416 | Msa0903990:CDS | 45.0% | |
| ACCCTAGTAGTAATTGGTGG+GGG | - | chr6_2:1414949-1414968 | Msa0903990:CDS | 45.0% | |
| ACCCCCACCAATTACTACTA+GGG | + | chr6_2:1414953-1414972 | None:intergenic | 45.0% | |
| TACCCCCACCAATTACTACT+AGG | + | chr6_2:1414954-1414973 | None:intergenic | 45.0% | |
| ! | GGGGGTATAAAAGCACAAAG+TGG | - | chr6_2:1414967-1414986 | Msa0903990:CDS | 45.0% |
| GCTAGGTTTCCAAATCTTGC+AGG | + | chr6_2:1415014-1415033 | None:intergenic | 45.0% | |
| GTTGGAAAAGCTTGGAAACG+TGG | - | chr6_2:1415110-1415129 | Msa0903990:CDS | 45.0% | |
| ! | GTAGATTTTCCAGTTCCTGG+TGG | + | chr6_2:1415152-1415171 | None:intergenic | 45.0% |
| GATTGTTCTCTCGATCTCAC+TGG | - | chr6_2:1415308-1415327 | Msa0903990:CDS | 45.0% | |
| GATGGAATTTGGTCAGCTTG+TGG | - | chr6_2:1415458-1415477 | Msa0903990:CDS | 45.0% | |
| ! | GAGAATGGTGTCGAAGAGAA+TGG | - | chr6_2:1415908-1415927 | Msa0903990:CDS | 45.0% |
| AGATGGGAATTGGGGAACTA+TGG | - | chr6_2:1414397-1414416 | Msa0903990:CDS | 45.0% | |
| ACCCTAGTAGTAATTGGTGG+GGG | - | chr6_2:1414949-1414968 | Msa0903990:CDS | 45.0% | |
| ACCCCCACCAATTACTACTA+GGG | + | chr6_2:1414953-1414972 | None:intergenic | 45.0% | |
| TACCCCCACCAATTACTACT+AGG | + | chr6_2:1414954-1414973 | None:intergenic | 45.0% | |
| ! | GGGGGTATAAAAGCACAAAG+TGG | - | chr6_2:1414967-1414986 | Msa0903990:CDS | 45.0% |
| GCTAGGTTTCCAAATCTTGC+AGG | + | chr6_2:1415014-1415033 | None:intergenic | 45.0% | |
| GTTGGAAAAGCTTGGAAACG+TGG | - | chr6_2:1415110-1415129 | Msa0903990:CDS | 45.0% | |
| ! | GTAGATTTTCCAGTTCCTGG+TGG | + | chr6_2:1415152-1415171 | None:intergenic | 45.0% |
| GATTGTTCTCTCGATCTCAC+TGG | - | chr6_2:1415308-1415327 | Msa0903990:CDS | 45.0% | |
| GATGGAATTTGGTCAGCTTG+TGG | - | chr6_2:1415458-1415477 | Msa0903990:CDS | 45.0% | |
| ! | GAGAATGGTGTCGAAGAGAA+TGG | - | chr6_2:1415908-1415927 | Msa0903990:CDS | 45.0% |
| GGGGAACTATGGTCACAACT+AGG | - | chr6_2:1414408-1414427 | Msa0903990:CDS | 50.0% | |
| CTTTATGGTCCACCAGGAAC+TGG | - | chr6_2:1415140-1415159 | Msa0903990:CDS | 50.0% | |
| GATCCTGCTCTCATAAGGAG+AGG | - | chr6_2:1415527-1415546 | Msa0903990:CDS | 50.0% | |
| CTTCCTCTCCTTATGAGAGC+AGG | + | chr6_2:1415533-1415552 | None:intergenic | 50.0% | |
| GGATGAGGAAGCAAAGCTCA+AGG | - | chr6_2:1415820-1415839 | Msa0903990:CDS | 50.0% | |
| GGGGAACTATGGTCACAACT+AGG | - | chr6_2:1414408-1414427 | Msa0903990:CDS | 50.0% | |
| CTTTATGGTCCACCAGGAAC+TGG | - | chr6_2:1415140-1415159 | Msa0903990:CDS | 50.0% | |
| GATCCTGCTCTCATAAGGAG+AGG | - | chr6_2:1415527-1415546 | Msa0903990:CDS | 50.0% | |
| CTTCCTCTCCTTATGAGAGC+AGG | + | chr6_2:1415533-1415552 | None:intergenic | 50.0% | |
| GGATGAGGAAGCAAAGCTCA+AGG | - | chr6_2:1415820-1415839 | Msa0903990:CDS | 50.0% | |
| CTCTCGATCTCACTGGGCAA+AGG | - | chr6_2:1415315-1415334 | Msa0903990:CDS | 55.0% | |
| GGTCAGCTTGTGGATCAGAG+AGG | - | chr6_2:1415468-1415487 | Msa0903990:CDS | 55.0% | |
| CTCTCGATCTCACTGGGCAA+AGG | - | chr6_2:1415315-1415334 | Msa0903990:CDS | 55.0% | |
| GGTCAGCTTGTGGATCAGAG+AGG | - | chr6_2:1415468-1415487 | Msa0903990:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 1414393 | 1415958 | 1414393 | ID=Msa0903990;Name=Msa0903990 |
| chr6_2 | mRNA | 1414393 | 1415958 | 1414393 | ID=Msa0903990-mRNA-1;Parent=Msa0903990;Name=Msa0903990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|521 |
| chr6_2 | exon | 1414393 | 1415958 | 1414393 | ID=Msa0903990-mRNA-1:exon:556;Parent=Msa0903990-mRNA-1 |
| chr6_2 | CDS | 1414393 | 1415958 | 1414393 | ID=Msa0903990-mRNA-1:cds;Parent=Msa0903990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
