AlfalfaGEDB | Msa0903990

M. sativa cultivar zhongmu-4 / Msa0903990

KEGG: K01772|K08900
GO: GO:0000003 GO:0000302 GO:0000304 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005783 GO:0005911 GO:0006810 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0007584 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009506 GO:0009605 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010154 GO:0010431 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0021700 GO:0022414 GO:0022607 GO:0022857 GO:0022884 GO:0030054 GO:0031667 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0033993 GO:0034622 GO:0042221 GO:0042493 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051131 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0061458 GO:0065003 GO:0071695 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0097305 GO:1901700 GO:1904680
PFAM: PF14363.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903990	XP_003618437.1	94.231	520	29	1	1	520	1	519	0.0	933

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903990	sp\|Q9FLD5\|ASD_ARATH	62.391	460	163	5	5	457	4	460	0.0	587

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002460	Msa0903990	0.822657	2.107017e-53	-8.615850e-47
Msa0042550	Msa0903990	0.801836	7.460253e-49	-8.615850e-47
Msa0147510	Msa0903990	0.805862	1.087502e-49	-8.615850e-47
Msa0198640	Msa0903990	0.804045	2.607473e-49	-8.615850e-47
Msa0229590	Msa0903990	0.813748	2.187573e-51	-8.615850e-47
Msa0267370	Msa0903990	0.805471	1.314049e-49	-8.615850e-47
Msa0321080	Msa0903990	0.806089	9.741492e-50	-8.615850e-47
Msa0340450	Msa0903990	0.800977	1.118899e-48	-8.615850e-47
Msa0363790	Msa0903990	0.803081	4.132049e-49	-8.615850e-47
Msa0414650	Msa0903990	0.815567	8.654087e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0903990	MtrunA17_Chr6g0452371	94.231	520	29	1	1	520	1	519	933
Msa0903990	MtrunA17_Chr6g0452391	86.100	518	71	1	3	520	1	517	849
Msa0903990	MtrunA17_Chr6g0452451	71.236	518	129	5	1	505	1	511	710
Msa0903990	MtrunA17_Chr6g0452401	75.000	452	94	3	25	461	1	448	685
Msa0903990	MtrunA17_Chr7g0215951	66.955	463	144	4	5	461	1	460	639
Msa0903990	MtrunA17_Chr6g0466811	67.134	499	140	5	12	509	21	496	638
Msa0903990	MtrunA17_Chr4g0059811	57.738	504	195	8	7	495	8	508	585
Msa0903990	MtrunA17_Chr1g0155131	59.205	478	178	5	3	477	1	464	572
Msa0903990	MtrunA17_Chr6g0452411	72.464	414	95	4	105	505	1	408	565
Msa0903990	MtrunA17_Chr2g0292561	57.872	470	181	5	7	472	8	464	551

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0903990	AT5G40010.1	62.391	460	163	5	5	457	4	460	0.0	587
Msa0903990	AT3G28580.1	60.521	461	165	8	5	457	4	455	0.0	547
Msa0903990	AT3G28510.1	59.219	461	186	2	6	466	5	463	0.0	531
Msa0903990	AT3G28580.2	57.205	458	163	7	5	457	4	433	3.95e-175	502
Msa0903990	AT3G28540.2	53.996	513	214	8	6	513	5	500	4.89e-166	480
Msa0903990	AT3G28540.1	53.996	513	214	8	6	513	5	500	6.50e-166	480
Msa0903990	AT3G28610.1	50.728	481	178	10	10	465	4	450	8.53e-164	473
Msa0903990	AT3G28600.1	50.939	479	192	8	1	465	1	450	5.19e-162	469
Msa0903990	AT5G40000.1	48.361	488	209	9	3	474	2	462	1.57e-154	449
Msa0903990	AT3G28520.1	55.679	449	185	6	17	460	2	441	1.33e-152	445

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Find 69 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCACTTGTTCTTAGCA+TGG	0.557204	6_2:-1415643	Msa0903990:CDS
AAACGTGGTTATCTACTTTA+TGG	0.185533	6_2:-1415204	Msa0903990:CDS
AAAGAATATTATGCTAAAGT+TGG	0.397678	6_2:-1415237	Msa0903990:CDS
AAAGTATGAAGATGGGAATT+GGG	0.332092	6_2:-1415941	None:intergenic
AAATATCTACGAAGGTTAGG+TGG	0.536970	6_2:+1415846	None:intergenic
AAATCTTCAGAGATTGACTT+TGG	0.428448	6_2:+1414613	None:intergenic
AAATTCTCAGCAACATCAGC+AGG	0.526229	6_2:+1414640	None:intergenic
AACATTTCAAAGTATGAAGA+TGG	0.422358	6_2:-1415949	None:intergenic
AACCCTAGTAGTAATTGGTG+GGG	0.572012	6_2:-1415381	Msa0903990:CDS
AACTTGATCCTGCTCTCATA+AGG	0.478108	6_2:-1414807	Msa0903990:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAAATATCTACGAAGGTT+AGG	+	chr6_2:1414489-1414508	None:intergenic	30.0%
AGTTTGCACTAAGATATGTT+TGG	+	chr6_2:1414617-1414636	None:intergenic	30.0%
GAAATCATAGATGAGTTCAA+TGG	-	chr6_2:1414720-1414739	Msa0903990:CDS	30.0%
AAGCTATTATGAGCAAGAAT+AGG	-	chr6_2:1414904-1414923	Msa0903990:CDS	30.0%
CAAATAACCCTAGTAGTAAT+TGG	-	chr6_2:1414943-1414962	Msa0903990:CDS	30.0%
GATCTTCTTAAGTTCAAGAA+AGG	-	chr6_2:1415068-1415087	Msa0903990:CDS	30.0%
AAACGTGGTTATCTACTTTA+TGG	-	chr6_2:1415125-1415144	Msa0903990:CDS	30.0%
TGATGAGAATGATGAAAAGA+AGG	-	chr6_2:1415361-1415380	Msa0903990:CDS	30.0%
GACTTTGATTCAATTTCTTG+AGG	-	chr6_2:1415754-1415773	Msa0903990:CDS	30.0%
GGAAAAAAAGAAAAAGGATG+AGG	-	chr6_2:1415775-1415794	Msa0903990:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	1414393	1415958	1414393	ID=Msa0903990;Name=Msa0903990
chr6_2	mRNA	1414393	1415958	1414393	ID=Msa0903990-mRNA-1;Parent=Msa0903990;Name=Msa0903990-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|521
chr6_2	exon	1414393	1415958	1414393	ID=Msa0903990-mRNA-1:exon:556;Parent=Msa0903990-mRNA-1
chr6_2	CDS	1414393	1415958	1414393	ID=Msa0903990-mRNA-1:cds;Parent=Msa0903990-mRNA-1

Gene Sequence

>Msa0903990

ATGAAGATGGGAATTGGGGAACTATGGTCACAACTAGGTTCAATCACGGCTAGCATAATGTTTGTGTATGCCATGTTTGATAAATTTTTCCCACCTAACCTTCGTAGATATTTTCTAAAATACACAAACAAATTCACAAACTTTATGTATCCATACATCCATATAAAGTTTCATGAATTATCCGGTGAACGTCTCAAACAAAGTGAAACTTACAAAATCATCCAAACATATCTTAGTGCAAACTCATCACAAAGAGCTAGAAGACTTAAAGCTGAAGTTGTCAAAGATAGCCAAAAACCACTTGTTCTTAGCATGGATGACAATGAAGAAATCATAGATGAGTTCAATGGAGTCAAAGTTTGGTGGACTGCTAATTACACCACCTCAAAATCACAATCATTTTCTTACTATCCTACTTCAGATGAAAAAAGATTCTTAACCCTAACCTTCCACAAAAAGCATCGTGAACTCATCACTACCTCTTACATTCAACATGTGTTGGATGAAGGAAAAGCTATTATGAGCAAGAATAGGCAACTAAAGCTTTACACAAATAACCCTAGTAGTAATTGGTGGGGGTATAAAAGCACAAAGTGGAATCACACAACTTTTGAGCATCCTGCAAGATTTGGAAACCTAGCTATGGAACCAGAAAAGAAACAAGAGATTTTAAATGATCTTCTTAAGTTCAAGAAAGGTAAAGAATATTATGCTAAAGTTGGAAAAGCTTGGAAACGTGGTTATCTACTTTATGGTCCACCAGGAACTGGAAAATCTACCATGATTTCAGCTATAGCAAATTTCATGAACTATGATGTGTATGATCTTGAATTAACAACTGTTAAGGATAACAATGAGTTGAAGAGACTCTTGATTGAGACGTTGAGTAAATCGATTATAGTTATCGAAGATATTGATTGTTCTCTCGATCTCACTGGGCAAAGGAAGAAGAAAAAGGAGAAAGATGATGATGAGAATGATGAAAAGAAGGATCCTATTAAGAAAGCTGAAAAAGAAGAGAAGAATGAAAGCAAGGTAACTCTTTCGGGTTTGTTGAATTTTATTGATGGAATTTGGTCAGCTTGTGGATCAGAGAGGATCATAATTTTCACAACAAATTTTGTGGATAAACTTGATCCTGCTCTCATAAGGAGAGGAAGAATGGATAAGCATATAGAAATGTCTTATTGTAGCTATCAAGCTTTTAAGGTTCTTGCAAGAAACTACTTAGATGTTGAGTCTCATGATGATTTGTTTCCAATTATTGAAAAGTTGTTGGGAGAGACTAATATGACACCTGCTGATGTTGCTGAGAATTTGATGCCAAAGTCAATCTCTGAAGATTTTGAGAGTTGCTTGAAGACTTTGATTCAATTTCTTGAGGAAAAAAAGAAAAAGGATGAGGAGGAAGCAAAGAAAAAGGTAGAGGATGAGGAAGCAAAGCTCAAGGCAGAGAAAGAGAAACAAGAATTGATTCAAGAGGAAGAAAAGGTTAAGGTTGAGGAAAAAGTGAAGGAGAATGGTGTCGAAGAGAATGGTGTGAAAGAGAATGGTGTCATCACTTAA

Protein sequence

>Msa0903990

MKMGIGELWSQLGSITASIMFVYAMFDKFFPPNLRRYFLKYTNKFTNFMYPYIHIKFHELSGERLKQSETYKIIQTYLSANSSQRARRLKAEVVKDSQKPLVLSMDDNEEIIDEFNGVKVWWTANYTTSKSQSFSYYPTSDEKRFLTLTFHKKHRELITTSYIQHVLDEGKAIMSKNRQLKLYTNNPSSNWWGYKSTKWNHTTFEHPARFGNLAMEPEKKQEILNDLLKFKKGKEYYAKVGKAWKRGYLLYGPPGTGKSTMISAIANFMNYDVYDLELTTVKDNNELKRLLIETLSKSIIVIEDIDCSLDLTGQRKKKKEKDDDENDEKKDPIKKAEKEEKNESKVTLSGLLNFIDGIWSACGSERIIIFTTNFVDKLDPALIRRGRMDKHIEMSYCSYQAFKVLARNYLDVESHDDLFPIIEKLLGETNMTPADVAENLMPKSISEDFESCLKTLIQFLEEKKKKDEEEAKKKVEDEEAKLKAEKEKQELIQEEEKVKVEEKVKENGVEENGVKENGVIT*