Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1177160 | XP_013444640.2 | 94.539 | 293 | 16 | 0 | 1 | 293 | 1 | 293 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1177160 | sp|Q9M365|FB331_ARATH | 60.075 | 268 | 107 | 0 | 26 | 293 | 66 | 333 | 8.28e-121 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0615130 | Msa1177160 | 0.813812 | 2.117924e-51 | -8.615850e-47 |
| Msa0792290 | Msa1177160 | 0.970266 | 2.345603e-131 | -8.615850e-47 |
| Msa1025370 | Msa1177160 | 0.800213 | 1.601627e-48 | -8.615850e-47 |
| Msa1077460 | Msa1177160 | 0.806647 | 7.432157e-50 | -8.615850e-47 |
| Msa1079100 | Msa1177160 | 0.832075 | 1.162595e-55 | -8.615850e-47 |
| Msa1096580 | Msa1177160 | 0.802866 | 4.577220e-49 | -8.615850e-47 |
| Msa1100980 | Msa1177160 | 0.801990 | 6.937566e-49 | -8.615850e-47 |
| Msa1116990 | Msa1177160 | 0.811614 | 6.409731e-51 | -8.615850e-47 |
| Msa1124010 | Msa1177160 | 0.836887 | 7.190253e-57 | -8.615850e-47 |
| Msa1164120 | Msa1177160 | 0.804393 | 2.207195e-49 | -8.615850e-47 |
| Msa1177100 | Msa1177160 | 0.821218 | 4.538816e-53 | -8.615850e-47 |
| Msa1177130 | Msa1177160 | 0.907053 | 7.671037e-81 | -8.615850e-47 |
| Msa1177160 | Msa1245820 | 0.924558 | 5.996459e-90 | -8.615850e-47 |
| Msa1177160 | Msa1316930 | 0.960814 | 5.526630e-119 | -8.615850e-47 |
| Msa1177160 | Msa1316950 | 0.852325 | 4.970697e-61 | -8.615850e-47 |
| Msa0968290 | Msa1177160 | 0.806692 | 7.269556e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1177160 | MtrunA17_Chr8g0347091 | 94.539 | 293 | 16 | 0 | 1 | 293 | 1 | 293 | 0.0 | 583 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1177160 | AT3G61730.1 | 60.075 | 268 | 107 | 0 | 26 | 293 | 66 | 333 | 8.41e-122 | 353 |
| Msa1177160 | AT5G36000.1 | 56.716 | 268 | 116 | 0 | 26 | 293 | 62 | 329 | 3.69e-115 | 336 |
| Msa1177160 | AT3G62500.1 | 49.390 | 164 | 62 | 3 | 129 | 292 | 178 | 320 | 3.60e-43 | 152 |
| Msa1177160 | AT3G62500.2 | 49.390 | 164 | 62 | 3 | 129 | 292 | 178 | 320 | 3.79e-43 | 152 |
Find 75 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTCACGGTTGTTGCTTTC+TGG | 0.121172 | 8_1:+9460884 | Msa1177160:CDS |
| GACTGAGATAGCGAAGTTTC+TGG | 0.200830 | 8_1:+9459882 | Msa1177160:CDS |
| CTCTGTGAAGACTACGAAAA+TGG | 0.226003 | 8_1:+9461282 | Msa1177160:CDS |
| CTATCATGGATGATGCTATT+TGG | 0.269492 | 8_1:+9459956 | Msa1177160:CDS |
| GATATCAAGAAACGAGCTTA+TGG | 0.282438 | 8_1:+9461336 | Msa1177160:CDS |
| AAGCTCTACACTTCAGCTTT+TGG | 0.288606 | 8_1:+9460042 | Msa1177160:CDS |
| CCGATCATTCCACTTTCTCT+TGG | 0.335528 | 8_1:+9458941 | Msa1177160:CDS |
| GAAGGTTTGATGACGACATT+TGG | 0.363041 | 8_1:+9459860 | Msa1177160:intron |
| GTACCAGCAATCCAGATTCC+AGG | 0.388870 | 8_1:-9460918 | None:intergenic |
| AAACCTGGAATCTGGATTGC+TGG | 0.401140 | 8_1:+9460915 | Msa1177160:CDS |
| ACAACATTAAACCTGGAATC+TGG | 0.402861 | 8_1:+9460907 | Msa1177160:CDS |
| ATGAAAAGCAATCATGGTCT+TGG | 0.408754 | 8_1:-9461873 | None:intergenic |
| TTTGATTACAAGTCATGGAT+TGG | 0.411304 | 8_1:+9461830 | Msa1177160:CDS |
| ATATCAAGAAACGAGCTTAT+GGG | 0.412617 | 8_1:+9461337 | Msa1177160:CDS |
| GGATTGGGAAGGATAATTAC+TGG | 0.420053 | 8_1:+9461846 | Msa1177160:CDS |
| AAGACTACGAAAATGGGAAC+TGG | 0.425872 | 8_1:+9461289 | Msa1177160:CDS |
| ATGGTTCCGCCGTGCTATCA+TGG | 0.453543 | 8_1:+9459942 | Msa1177160:CDS |
| CTCCTGCTGTCGGAACTTGT+AGG | 0.455095 | 8_1:-9460165 | None:intergenic |
| GAGAGAGAACCAAGAGAAAG+TGG | 0.458853 | 8_1:-9458950 | None:intergenic |
| CACTTGAATGCCACAGGTGG+AGG | 0.462347 | 8_1:-9460015 | None:intergenic |
| CTTCGCCGGTGGCAGTTCTC+CGG | 0.464227 | 8_1:-9458860 | None:intergenic |
| TTGATTACAAGTCATGGATT+GGG | 0.468371 | 8_1:+9461831 | Msa1177160:CDS |
| TCTGTGAAGACTACGAAAAT+GGG | 0.468614 | 8_1:+9461283 | Msa1177160:CDS |
| TGCTGCATGAAAAGCAATCA+TGG | 0.479901 | 8_1:-9461879 | None:intergenic |
| GTTAAAGAAAGAAGAAAGCA+TGG | 0.485219 | 8_1:+9460848 | Msa1177160:CDS |
| CAAGTATTGAGGTCACAAAC+CGG | 0.486887 | 8_1:-9461061 | None:intergenic |
| AAACGAGCTTATGGGGCTGC+TGG | 0.488804 | 8_1:+9461345 | Msa1177160:CDS |
| CGGTATTTGATTACAAGTCA+TGG | 0.490207 | 8_1:+9461825 | Msa1177160:CDS |
| GAAAATTCAGTCTCTCTGTC+AGG | 0.492809 | 8_1:-9460818 | None:intergenic |
| TCGGAGAGAAAGCGAGGACG+AGG | 0.497635 | 8_1:-9458922 | None:intergenic |
| CTGGCGAGTTCTTCTACGTC+TGG | 0.501579 | 8_1:+9461390 | Msa1177160:CDS |
| TCTGCAGCTTGTGCGATGCC+CGG | 0.502062 | 8_1:+9461042 | Msa1177160:CDS |
| AGGAGAGTTGCAAGAGCAGA+TGG | 0.504948 | 8_1:-9458902 | None:intergenic |
| CCAAGAGAAAGTGGAATGAT+CGG | 0.506802 | 8_1:-9458941 | None:intergenic |
| AATGCCACAGGTGGAGGAGA+TGG | 0.508135 | 8_1:-9460009 | None:intergenic |
| TCTTCTTTCTTTAACTCCCC+CGG | 0.510064 | 8_1:-9460840 | None:intergenic |
| CGGTGGCAGTTCTCCGGCGT+CGG | 0.514667 | 8_1:-9458854 | None:intergenic |
| TGGCAGTTCTCCGGCGTCGG+AGG | 0.518218 | 8_1:-9458851 | None:intergenic |
| CTCCACCTGTGGCATTCAAG+TGG | 0.519260 | 8_1:+9460016 | Msa1177160:CDS |
| CTCCTACAAGTTCCGACAGC+AGG | 0.520835 | 8_1:+9460163 | Msa1177160:CDS |
| ACTAATTTACAAGAAAATCA+AGG | 0.528332 | 8_1:+9461911 | Msa1177160:CDS |
| TTGCTCCACTTGAATGCCAC+AGG | 0.532015 | 8_1:-9460021 | None:intergenic |
| GTGGAGGAGATGGAACTTGA+AGG | 0.535718 | 8_1:-9459999 | None:intergenic |
| AATTACCATCACAAGTATTG+AGG | 0.538205 | 8_1:-9461072 | None:intergenic |
| TATAGGAACAATGCAGACAT+TGG | 0.539902 | 8_1:+9461236 | Msa1177160:intron |
| AACTGGGATTACGAGGTTGT+AGG | 0.542235 | 8_1:+9461306 | Msa1177160:CDS |
| TGAAAAGCAATCATGGTCTT+GGG | 0.544175 | 8_1:-9461872 | None:intergenic |
| AACGCTACTTCCTCCGACGC+CGG | 0.546509 | 8_1:+9458841 | Msa1177160:CDS |
| TTTCTGGACAACATTAAACC+TGG | 0.556196 | 8_1:+9460900 | Msa1177160:CDS |
| TGATAGCACGGCGGAACCAT+CGG | 0.557930 | 8_1:-9459939 | None:intergenic |
| CAATGCAGACATTGGATGCA+AGG | 0.559581 | 8_1:+9461244 | Msa1177160:CDS |
| CGTCGGATTCGCTTCGCCGG+TGG | 0.564375 | 8_1:-9458871 | None:intergenic |
| GAGGGCCACTGAAGAATCAA+AGG | 0.570525 | 8_1:-9460796 | None:intergenic |
| CTCCACTTGAATGCCACAGG+TGG | 0.571927 | 8_1:-9460018 | None:intergenic |
| AGTTCCATCTCCTCCACCTG+TGG | 0.576848 | 8_1:+9460005 | Msa1177160:CDS |
| TGGAAAGTCTCTGATAATGC+TGG | 0.577477 | 8_1:+9459906 | Msa1177160:CDS |
| TATCAAGAAACGAGCTTATG+GGG | 0.585752 | 8_1:+9461338 | Msa1177160:CDS |
| CTATCAGATTGGATGCGCAT+CGG | 0.586986 | 8_1:+9460765 | Msa1177160:intron |
| CAATGTGCTTCTCCTGCTGT+CGG | 0.593050 | 8_1:-9460175 | None:intergenic |
| CAGACGTAGAAGAACTCGCC+AGG | 0.599890 | 8_1:-9461389 | None:intergenic |
| AAGTATTGAGGTCACAAACC+GGG | 0.600506 | 8_1:-9461060 | None:intergenic |
| TGTGACCTCAATACTTGTGA+TGG | 0.607442 | 8_1:+9461067 | Msa1177160:CDS |
| GAGATAGCGAAGTTTCTGGA+TGG | 0.611982 | 8_1:+9459886 | Msa1177160:CDS |
| AATTCAGTCTCTCTGTCAGG+AGG | 0.618594 | 8_1:-9460815 | None:intergenic |
| CGACAGCAGGAGAAGCACAT+TGG | 0.619455 | 8_1:+9460176 | Msa1177160:CDS |
| GAAACTATGTTGAAGACTCA+CGG | 0.621215 | 8_1:+9460870 | Msa1177160:CDS |
| TGCTGGCAGCGACAAACCGA+TGG | 0.623760 | 8_1:+9459923 | Msa1177160:CDS |
| TAGCATCATCCATGATAGCA+CGG | 0.625465 | 8_1:-9459951 | None:intergenic |
| TTACAAGTCATGGATTGGGA+AGG | 0.625946 | 8_1:+9461835 | Msa1177160:CDS |
| CGACGCCGGAGAACTGCCAC+CGG | 0.630367 | 8_1:+9458855 | Msa1177160:CDS |
| ATTCAGTCTCTCTGTCAGGA+GGG | 0.634339 | 8_1:-9460814 | None:intergenic |
| AGACTACGAAAATGGGAACT+GGG | 0.645326 | 8_1:+9461290 | Msa1177160:CDS |
| GAATGATCGGAGAGAAAGCG+AGG | 0.656826 | 8_1:-9458928 | None:intergenic |
| AAATGGGAACTGGGATTACG+AGG | 0.675337 | 8_1:+9461299 | Msa1177160:CDS |
| CATCATCCATGATAGCACGG+CGG | 0.806408 | 8_1:-9459948 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATCTATAGAAAATA+TGG | - | chr8_1:9459813-9459832 | None:intergenic | 10.0% |
| !!! | GTTTTAATCTTTAAATTAAA+TGG | + | chr8_1:9461799-9461818 | Msa1177160:intron | 10.0% |
| !!! | TTTTCTATAACTTTTATATC+TGG | + | chr8_1:9459658-9459677 | Msa1177160:intron | 15.0% |
| !!! | AGAAATTCAGTTTGAATTTT+CGG | + | chr8_1:9459095-9459114 | Msa1177160:intron | 20.0% |
| !! | TCAAATATTCGAAATCAAAT+CGG | - | chr8_1:9459410-9459429 | None:intergenic | 20.0% |
| !! | TATCTGGAAATAATCAATTA+AGG | + | chr8_1:9459674-9459693 | Msa1177160:intron | 20.0% |
| !! | TTTCGAAATCAATGTTAATT+AGG | - | chr8_1:9460120-9460139 | None:intergenic | 20.0% |
| !!! | ATTAACATTGATTTCGAAAT+TGG | + | chr8_1:9460121-9460140 | Msa1177160:intron | 20.0% |
| !!! | AGTTAATGCTTTTTATCATT+TGG | + | chr8_1:9460311-9460330 | Msa1177160:intron | 20.0% |
| !!! | GTTAATGCTTTTTATCATTT+GGG | + | chr8_1:9460312-9460331 | Msa1177160:intron | 20.0% |
| !! | TATCATTTGGGAATATTAAA+AGG | + | chr8_1:9460324-9460343 | Msa1177160:intron | 20.0% |
| !! | ATCATTTGGGAATATTAAAA+GGG | + | chr8_1:9460325-9460344 | Msa1177160:intron | 20.0% |
| !! | TATAATATGTTCTATCAGAT+TGG | + | chr8_1:9460754-9460773 | Msa1177160:intron | 20.0% |
| !! | CTTAAAGAAAAACATTAACA+AGG | - | chr8_1:9461457-9461476 | None:intergenic | 20.0% |
| !! | AGAGTAGAAACATATATATA+TGG | + | chr8_1:9461539-9461558 | Msa1177160:intron | 20.0% |
| !!! | TTTTGAAATTAATTTGTTCC+TGG | - | chr8_1:9461639-9461658 | None:intergenic | 20.0% |
| !! | ACTAATTTACAAGAAAATCA+AGG | + | chr8_1:9461911-9461930 | Msa1177160:CDS | 20.0% |
| !!! | ATGAAGTTTTTGAGTTTTGA+CGG | + | chr8_1:9459361-9459380 | Msa1177160:intron | 25.0% |
| ! | TGTGAATCTCACAATATATT+AGG | - | chr8_1:9460228-9460247 | None:intergenic | 25.0% |
| !! | AGAATTTTGCATAAGCAATA+AGG | - | chr8_1:9460539-9460558 | None:intergenic | 25.0% |
| ! | TATAAGAATGAATCAGTCAA+TGG | - | chr8_1:9460646-9460665 | None:intergenic | 25.0% |
| ! | GTTATATTGTCAAAGATAAC+TGG | - | chr8_1:9460947-9460966 | None:intergenic | 25.0% |
| !!! | CTTTTTACCAGTTTAAGTTA+AGG | + | chr8_1:9461570-9461589 | Msa1177160:intron | 25.0% |
| ! | ATCTTTAAATTAAATGGCAG+CGG | + | chr8_1:9461805-9461824 | Msa1177160:intron | 25.0% |
| !! | TGCTAGAAGCATTTGAAAAT+CGG | + | chr8_1:9459283-9459302 | Msa1177160:intron | 30.0% |
| TTAATCCGAATGCTTAATGA+AGG | + | chr8_1:9459842-9459861 | Msa1177160:intron | 30.0% | |
| TCAAACCTTCATTAAGCATT+CGG | - | chr8_1:9459850-9459869 | None:intergenic | 30.0% | |
| TCGAAATTGGAAATTTCAGA+TGG | + | chr8_1:9460134-9460153 | Msa1177160:intron | 30.0% | |
| CGAAATTGGAAATTTCAGAT+GGG | + | chr8_1:9460135-9460154 | Msa1177160:intron | 30.0% | |
| CAGTTATGGAAATGAATTTG+AGG | + | chr8_1:9460272-9460291 | Msa1177160:intron | 30.0% | |
| TTATGGAAATGAATTTGAGG+TGG | + | chr8_1:9460275-9460294 | Msa1177160:intron | 30.0% | |
| !! | GATAAAAAGCATTAACTGTG+CGG | - | chr8_1:9460308-9460327 | None:intergenic | 30.0% |
| CATTGTCAGATCTAGATTTA+GGG | - | chr8_1:9460498-9460517 | None:intergenic | 30.0% | |
| TCATTGTCAGATCTAGATTT+AGG | - | chr8_1:9460499-9460518 | None:intergenic | 30.0% | |
| CTGACAATGATATATGTACA+TGG | + | chr8_1:9460509-9460528 | Msa1177160:intron | 30.0% | |
| ! | TTTTTCCTTTGATTCTTCAG+TGG | + | chr8_1:9460791-9460810 | Msa1177160:CDS | 30.0% |
| GTTAAAGAAAGAAGAAAGCA+TGG | + | chr8_1:9460848-9460867 | Msa1177160:CDS | 30.0% | |
| ! | AATTACCATCACAAGTATTG+AGG | - | chr8_1:9461075-9461094 | None:intergenic | 30.0% |
| AAGGGATATACAAAACTCAT+TGG | - | chr8_1:9461108-9461127 | None:intergenic | 30.0% | |
| ! | TGAATTATTCATGGTGCTAA+GGG | - | chr8_1:9461126-9461145 | None:intergenic | 30.0% |
| ! | ATGAATTATTCATGGTGCTA+AGG | - | chr8_1:9461127-9461146 | None:intergenic | 30.0% |
| AACCACTGATGAATTATTCA+TGG | - | chr8_1:9461135-9461154 | None:intergenic | 30.0% | |
| ATATCAAGAAACGAGCTTAT+GGG | + | chr8_1:9461337-9461356 | Msa1177160:CDS | 30.0% | |
| AATGACATGACATTAGATTG+TGG | - | chr8_1:9461492-9461511 | None:intergenic | 30.0% | |
| AATGAATGTATAGATAGTCC+AGG | + | chr8_1:9461618-9461637 | Msa1177160:intron | 30.0% | |
| TAGTAACTATCTTCTTGGAA+GGG | - | chr8_1:9461749-9461768 | None:intergenic | 30.0% | |
| TTAGTAACTATCTTCTTGGA+AGG | - | chr8_1:9461750-9461769 | None:intergenic | 30.0% | |
| GAACTTAGTAACTATCTTCT+TGG | - | chr8_1:9461754-9461773 | None:intergenic | 30.0% | |
| AGAAGATAGTTACTAAGTTC+TGG | + | chr8_1:9461754-9461773 | Msa1177160:intron | 30.0% | |
| TTTGATTACAAGTCATGGAT+TGG | + | chr8_1:9461830-9461849 | Msa1177160:CDS | 30.0% | |
| TTGATTACAAGTCATGGATT+GGG | + | chr8_1:9461831-9461850 | Msa1177160:CDS | 30.0% | |
| AGCTATAGAAAATTAGCGAG+TGG | - | chr8_1:9459726-9459745 | None:intergenic | 35.0% | |
| CTATCATGGATGATGCTATT+TGG | + | chr8_1:9459956-9459975 | Msa1177160:CDS | 35.0% | |
| ATAGATTCCACACACAGTTA+TGG | + | chr8_1:9460258-9460277 | Msa1177160:intron | 35.0% | |
| TTCATTTCCATAACTGTGTG+TGG | - | chr8_1:9460268-9460287 | None:intergenic | 35.0% | |
| CAGTAACTCTTGTCAATCTA+AGG | - | chr8_1:9460471-9460490 | None:intergenic | 35.0% | |
| TCAATGGCTGGATAAATTCT+AGG | - | chr8_1:9460630-9460649 | None:intergenic | 35.0% | |
| GAAACTATGTTGAAGACTCA+CGG | + | chr8_1:9460870-9460889 | Msa1177160:CDS | 35.0% | |
| TTTCTGGACAACATTAAACC+TGG | + | chr8_1:9460900-9460919 | Msa1177160:CDS | 35.0% | |
| ACAACATTAAACCTGGAATC+TGG | + | chr8_1:9460907-9460926 | Msa1177160:CDS | 35.0% | |
| CACCATGAATAATTCATCAG+TGG | + | chr8_1:9461130-9461149 | Msa1177160:intron | 35.0% | |
| ! | GTTACTGTTTTGTACTGCAA+GGG | + | chr8_1:9461152-9461171 | Msa1177160:intron | 35.0% |
| GGGTTTGCGTTAGAATAATA+TGG | + | chr8_1:9461172-9461191 | Msa1177160:intron | 35.0% | |
| CATGTTTCTCCTGCTTATAT+AGG | + | chr8_1:9461219-9461238 | Msa1177160:intron | 35.0% | |
| TGCATTGTTCCTATATAAGC+AGG | - | chr8_1:9461231-9461250 | None:intergenic | 35.0% | |
| TATAGGAACAATGCAGACAT+TGG | + | chr8_1:9461236-9461255 | Msa1177160:intron | 35.0% | |
| TCTGTGAAGACTACGAAAAT+GGG | + | chr8_1:9461283-9461302 | Msa1177160:CDS | 35.0% | |
| GATATCAAGAAACGAGCTTA+TGG | + | chr8_1:9461336-9461355 | Msa1177160:CDS | 35.0% | |
| TATCAAGAAACGAGCTTATG+GGG | + | chr8_1:9461338-9461357 | Msa1177160:CDS | 35.0% | |
| CAGGTGTTTCACATCAAAAA+TGG | - | chr8_1:9461373-9461392 | None:intergenic | 35.0% | |
| ! | CATTTTTGATGTGAAACACC+TGG | + | chr8_1:9461371-9461390 | Msa1177160:CDS | 35.0% |
| TGCGTAACCTTAACTTAAAC+TGG | - | chr8_1:9461580-9461599 | None:intergenic | 35.0% | |
| CGGTATTTGATTACAAGTCA+TGG | + | chr8_1:9461825-9461844 | Msa1177160:CDS | 35.0% | |
| TGAAAAGCAATCATGGTCTT+GGG | - | chr8_1:9461875-9461894 | None:intergenic | 35.0% | |
| ATGAAAAGCAATCATGGTCT+TGG | - | chr8_1:9461876-9461895 | None:intergenic | 35.0% | |
| !!! | AGCAGATGGTTTTGTTACGT+CGG | - | chr8_1:9458891-9458910 | None:intergenic | 40.0% |
| CCAAGAGAAAGTGGAATGAT+CGG | - | chr8_1:9458944-9458963 | None:intergenic | 40.0% | |
| !! | GAAGGTTTGATGACGACATT+TGG | + | chr8_1:9459860-9459879 | Msa1177160:intron | 40.0% |
| ! | TGGAAAGTCTCTGATAATGC+TGG | + | chr8_1:9459906-9459925 | Msa1177160:CDS | 40.0% |
| TAGCATCATCCATGATAGCA+CGG | - | chr8_1:9459954-9459973 | None:intergenic | 40.0% | |
| ! | AAGCTCTACACTTCAGCTTT+TGG | + | chr8_1:9460042-9460061 | Msa1177160:CDS | 40.0% |
| GGAATATTAAAAGGGCAACC+CGG | + | chr8_1:9460333-9460352 | Msa1177160:intron | 40.0% | |
| ! | AGAAGATTGATGACTCACAC+AGG | - | chr8_1:9460440-9460459 | None:intergenic | 40.0% |
| AGAATGAATCAGTCAATGGC+TGG | - | chr8_1:9460642-9460661 | None:intergenic | 40.0% | |
| GAAAATTCAGTCTCTCTGTC+AGG | - | chr8_1:9460821-9460840 | None:intergenic | 40.0% | |
| ! | GACAGAGAGACTGAATTTTC+CGG | + | chr8_1:9460821-9460840 | Msa1177160:CDS | 40.0% |
| ! | ACAGAGAGACTGAATTTTCC+GGG | + | chr8_1:9460822-9460841 | Msa1177160:CDS | 40.0% |
| TCTTCTTTCTTTAACTCCCC+CGG | - | chr8_1:9460843-9460862 | None:intergenic | 40.0% | |
| !! | AAGTATTGAGGTCACAAACC+GGG | - | chr8_1:9461063-9461082 | None:intergenic | 40.0% |
| !! | CAAGTATTGAGGTCACAAAC+CGG | - | chr8_1:9461064-9461083 | None:intergenic | 40.0% |
| TGTGACCTCAATACTTGTGA+TGG | + | chr8_1:9461067-9461086 | Msa1177160:CDS | 40.0% | |
| ! | GGTTACTGTTTTGTACTGCA+AGG | + | chr8_1:9461151-9461170 | Msa1177160:intron | 40.0% |
| ! | CATTTTCGTAGTCTTCACAG+AGG | - | chr8_1:9461284-9461303 | None:intergenic | 40.0% |
| CTCTGTGAAGACTACGAAAA+TGG | + | chr8_1:9461282-9461301 | Msa1177160:CDS | 40.0% | |
| AAGACTACGAAAATGGGAAC+TGG | + | chr8_1:9461289-9461308 | Msa1177160:CDS | 40.0% | |
| AGACTACGAAAATGGGAACT+GGG | + | chr8_1:9461290-9461309 | Msa1177160:CDS | 40.0% | |
| CTCCGAATGATTCTTGGTTT+GGG | + | chr8_1:9461671-9461690 | Msa1177160:intron | 40.0% | |
| ! | TCCGAATGATTCTTGGTTTG+GGG | + | chr8_1:9461672-9461691 | Msa1177160:intron | 40.0% |
| TCCCCAAACCAAGAATCATT+CGG | - | chr8_1:9461676-9461695 | None:intergenic | 40.0% | |
| !! | TTACAAGTCATGGATTGGGA+AGG | + | chr8_1:9461835-9461854 | Msa1177160:CDS | 40.0% |
| GGATTGGGAAGGATAATTAC+TGG | + | chr8_1:9461846-9461865 | Msa1177160:CDS | 40.0% | |
| TGCTGCATGAAAAGCAATCA+TGG | - | chr8_1:9461882-9461901 | None:intergenic | 40.0% | |
| CCGATCATTCCACTTTCTCT+TGG | + | chr8_1:9458941-9458960 | Msa1177160:CDS | 45.0% | |
| GAGAGAGAACCAAGAGAAAG+TGG | - | chr8_1:9458953-9458972 | None:intergenic | 45.0% | |
| GACTGAGATAGCGAAGTTTC+TGG | + | chr8_1:9459882-9459901 | Msa1177160:CDS | 45.0% | |
| ! | GAGATAGCGAAGTTTCTGGA+TGG | + | chr8_1:9459886-9459905 | Msa1177160:CDS | 45.0% |
| GAACATCGATGAACGCGTAT+AGG | - | chr8_1:9460077-9460096 | None:intergenic | 45.0% | |
| CTATCAGATTGGATGCGCAT+CGG | + | chr8_1:9460765-9460784 | Msa1177160:intron | 45.0% | |
| ATTCAGTCTCTCTGTCAGGA+GGG | - | chr8_1:9460817-9460836 | None:intergenic | 45.0% | |
| AATTCAGTCTCTCTGTCAGG+AGG | - | chr8_1:9460818-9460837 | None:intergenic | 45.0% | |
| ! | CAGAGAGACTGAATTTTCCG+GGG | + | chr8_1:9460823-9460842 | Msa1177160:CDS | 45.0% |
| ! | AGAGAGACTGAATTTTCCGG+GGG | + | chr8_1:9460824-9460843 | Msa1177160:CDS | 45.0% |
| AAACCTGGAATCTGGATTGC+TGG | + | chr8_1:9460915-9460934 | Msa1177160:CDS | 45.0% | |
| CAATGCAGACATTGGATGCA+AGG | + | chr8_1:9461244-9461263 | Msa1177160:CDS | 45.0% | |
| AAATGGGAACTGGGATTACG+AGG | + | chr8_1:9461299-9461318 | Msa1177160:CDS | 45.0% | |
| AACTGGGATTACGAGGTTGT+AGG | + | chr8_1:9461306-9461325 | Msa1177160:CDS | 45.0% | |
| GTCAACTTACCAACAGTCAG+TGG | + | chr8_1:9461431-9461450 | Msa1177160:intron | 45.0% | |
| ! | TTAACAAGGCCACTGACTGT+TGG | - | chr8_1:9461443-9461462 | None:intergenic | 45.0% |
| TGAAGCCTCCGAATGATTCT+TGG | + | chr8_1:9461665-9461684 | Msa1177160:intron | 45.0% | |
| CCAAACCAAGAATCATTCGG+AGG | - | chr8_1:9461673-9461692 | None:intergenic | 45.0% | |
| CCTCCGAATGATTCTTGGTT+TGG | + | chr8_1:9461670-9461689 | Msa1177160:intron | 45.0% | |
| AGGAGAGTTGCAAGAGCAGA+TGG | - | chr8_1:9458905-9458924 | None:intergenic | 50.0% | |
| GAATGATCGGAGAGAAAGCG+AGG | - | chr8_1:9458931-9458950 | None:intergenic | 50.0% | |
| CATCATCCATGATAGCACGG+CGG | - | chr8_1:9459951-9459970 | None:intergenic | 50.0% | |
| GTGGAGGAGATGGAACTTGA+AGG | - | chr8_1:9460002-9460021 | None:intergenic | 50.0% | |
| TTGCTCCACTTGAATGCCAC+AGG | - | chr8_1:9460024-9460043 | None:intergenic | 50.0% | |
| CAATGTGCTTCTCCTGCTGT+CGG | - | chr8_1:9460178-9460197 | None:intergenic | 50.0% | |
| TCCCAAATGCTTCAGTGCAC+CGG | - | chr8_1:9460355-9460374 | None:intergenic | 50.0% | |
| GAGGGCCACTGAAGAATCAA+AGG | - | chr8_1:9460799-9460818 | None:intergenic | 50.0% | |
| !! | GACTCACGGTTGTTGCTTTC+TGG | + | chr8_1:9460884-9460903 | Msa1177160:CDS | 50.0% |
| GTACCAGCAATCCAGATTCC+AGG | - | chr8_1:9460921-9460940 | None:intergenic | 50.0% | |
| TTACGTCGGATTCGCTTCGC+CGG | - | chr8_1:9458877-9458896 | None:intergenic | 55.0% | |
| TGATAGCACGGCGGAACCAT+CGG | - | chr8_1:9459942-9459961 | None:intergenic | 55.0% | |
| ATGGTTCCGCCGTGCTATCA+TGG | + | chr8_1:9459942-9459961 | Msa1177160:CDS | 55.0% | |
| AGTTCCATCTCCTCCACCTG+TGG | + | chr8_1:9460005-9460024 | Msa1177160:CDS | 55.0% | |
| AATGCCACAGGTGGAGGAGA+TGG | - | chr8_1:9460012-9460031 | None:intergenic | 55.0% | |
| CACTTGAATGCCACAGGTGG+AGG | - | chr8_1:9460018-9460037 | None:intergenic | 55.0% | |
| CTCCACCTGTGGCATTCAAG+TGG | + | chr8_1:9460016-9460035 | Msa1177160:CDS | 55.0% | |
| CTCCACTTGAATGCCACAGG+TGG | - | chr8_1:9460021-9460040 | None:intergenic | 55.0% | |
| CTCCTACAAGTTCCGACAGC+AGG | + | chr8_1:9460163-9460182 | Msa1177160:CDS | 55.0% | |
| CTCCTGCTGTCGGAACTTGT+AGG | - | chr8_1:9460168-9460187 | None:intergenic | 55.0% | |
| ! | CGACAGCAGGAGAAGCACAT+TGG | + | chr8_1:9460176-9460195 | Msa1177160:CDS | 55.0% |
| ! | ACCCGGTGCACTGAAGCATT+TGG | + | chr8_1:9460350-9460369 | Msa1177160:intron | 55.0% |
| CCCAAATGCTTCAGTGCACC+GGG | - | chr8_1:9460354-9460373 | None:intergenic | 55.0% | |
| ! | CCCGGTGCACTGAAGCATTT+GGG | + | chr8_1:9460351-9460370 | Msa1177160:intron | 55.0% |
| AAACGAGCTTATGGGGCTGC+TGG | + | chr8_1:9461345-9461364 | Msa1177160:CDS | 55.0% | |
| CAGACGTAGAAGAACTCGCC+AGG | - | chr8_1:9461392-9461411 | None:intergenic | 55.0% | |
| CTGGCGAGTTCTTCTACGTC+TGG | + | chr8_1:9461390-9461409 | Msa1177160:CDS | 55.0% | |
| AACGCTACTTCCTCCGACGC+CGG | + | chr8_1:9458841-9458860 | Msa1177160:CDS | 60.0% | |
| TCGGAGAGAAAGCGAGGACG+AGG | - | chr8_1:9458925-9458944 | None:intergenic | 60.0% | |
| TGCTGGCAGCGACAAACCGA+TGG | + | chr8_1:9459923-9459942 | Msa1177160:CDS | 60.0% | |
| TCTGCAGCTTGTGCGATGCC+CGG | + | chr8_1:9461042-9461061 | Msa1177160:CDS | 60.0% | |
| CTTCGCCGGTGGCAGTTCTC+CGG | - | chr8_1:9458863-9458882 | None:intergenic | 65.0% | |
| ! | TGGCAGTTCTCCGGCGTCGG+AGG | - | chr8_1:9458854-9458873 | None:intergenic | 70.0% |
| CGGTGGCAGTTCTCCGGCGT+CGG | - | chr8_1:9458857-9458876 | None:intergenic | 70.0% | |
| CGACGCCGGAGAACTGCCAC+CGG | + | chr8_1:9458855-9458874 | Msa1177160:CDS | 70.0% | |
| CGTCGGATTCGCTTCGCCGG+TGG | - | chr8_1:9458874-9458893 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 9458823 | 9461937 | 9458823 | ID=Msa1177160;Name=Msa1177160 |
| chr8_1 | mRNA | 9458823 | 9461937 | 9458823 | ID=Msa1177160-mRNA-1;Parent=Msa1177160;Name=Msa1177160-mRNA-1;_AED=0.04;_eAED=0.05;_QI=0|0|0|1|1|1|7|0|293 |
| chr8_1 | exon | 9458823 | 9458962 | 9458823 | ID=Msa1177160-mRNA-1:exon:3161;Parent=Msa1177160-mRNA-1 |
| chr8_1 | exon | 9459864 | 9460063 | 9459864 | ID=Msa1177160-mRNA-1:exon:3162;Parent=Msa1177160-mRNA-1 |
| chr8_1 | exon | 9460153 | 9460197 | 9460153 | ID=Msa1177160-mRNA-1:exon:3163;Parent=Msa1177160-mRNA-1 |
| chr8_1 | exon | 9460772 | 9460936 | 9460772 | ID=Msa1177160-mRNA-1:exon:3164;Parent=Msa1177160-mRNA-1 |
| chr8_1 | exon | 9461041 | 9461088 | 9461041 | ID=Msa1177160-mRNA-1:exon:3165;Parent=Msa1177160-mRNA-1 |
| chr8_1 | exon | 9461241 | 9461411 | 9461241 | ID=Msa1177160-mRNA-1:exon:3166;Parent=Msa1177160-mRNA-1 |
| chr8_1 | exon | 9461825 | 9461937 | 9461825 | ID=Msa1177160-mRNA-1:exon:3167;Parent=Msa1177160-mRNA-1 |
| chr8_1 | CDS | 9458823 | 9458962 | 9458823 | ID=Msa1177160-mRNA-1:cds;Parent=Msa1177160-mRNA-1 |
| chr8_1 | CDS | 9459864 | 9460063 | 9459864 | ID=Msa1177160-mRNA-1:cds;Parent=Msa1177160-mRNA-1 |
| chr8_1 | CDS | 9460153 | 9460197 | 9460153 | ID=Msa1177160-mRNA-1:cds;Parent=Msa1177160-mRNA-1 |
| chr8_1 | CDS | 9460772 | 9460936 | 9460772 | ID=Msa1177160-mRNA-1:cds;Parent=Msa1177160-mRNA-1 |
| chr8_1 | CDS | 9461041 | 9461088 | 9461041 | ID=Msa1177160-mRNA-1:cds;Parent=Msa1177160-mRNA-1 |
| chr8_1 | CDS | 9461241 | 9461411 | 9461241 | ID=Msa1177160-mRNA-1:cds;Parent=Msa1177160-mRNA-1 |
| chr8_1 | CDS | 9461825 | 9461937 | 9461825 | ID=Msa1177160-mRNA-1:cds;Parent=Msa1177160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
