Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792290 | sp|Q9M365|FB331_ARATH | 60.075 | 268 | 107 | 0 | 26 | 293 | 66 | 333 | 1.16e-120 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792290 | G8A2W2 | 94.198 | 293 | 17 | 0 | 1 | 293 | 1 | 293 | 0.0 | 579 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0615130 | Msa0792290 | 0.825782 | 3.884476e-54 | -8.615850e-47 |
| Msa0792290 | Msa0968290 | 0.807573 | 4.731877e-50 | -8.615850e-47 |
| Msa0792290 | Msa1037200 | 0.800799 | 1.216596e-48 | -8.615850e-47 |
| Msa0792290 | Msa1077460 | 0.813427 | 2.574227e-51 | -8.615850e-47 |
| Msa0792290 | Msa1079100 | 0.835452 | 1.664405e-56 | -8.615850e-47 |
| Msa0792290 | Msa1096580 | 0.809910 | 1.498186e-50 | -8.615850e-47 |
| Msa0792290 | Msa1116990 | 0.826929 | 2.071744e-54 | -8.615850e-47 |
| Msa0792290 | Msa1124010 | 0.840761 | 7.156750e-58 | -8.615850e-47 |
| Msa0792290 | Msa1164120 | 0.810383 | 1.184778e-50 | -8.615850e-47 |
| Msa0792290 | Msa1177100 | 0.818299 | 2.107066e-52 | -8.615850e-47 |
| Msa0792290 | Msa1177130 | 0.904501 | 1.149556e-79 | -8.615850e-47 |
| Msa0792290 | Msa1177160 | 0.970266 | 2.345603e-131 | -8.615850e-47 |
| Msa0792290 | Msa1245820 | 0.927327 | 1.372309e-91 | -8.615850e-47 |
| Msa0792290 | Msa1316930 | 0.954805 | 1.288556e-112 | -8.615850e-47 |
| Msa0792290 | Msa1316950 | 0.842433 | 2.594380e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792290 | MtrunA17_Chr8g0347091 | 94.198 | 293 | 17 | 0 | 1 | 293 | 1 | 293 | 0.0 | 579 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792290 | AT3G61730.1 | 60.075 | 268 | 107 | 0 | 26 | 293 | 66 | 333 | 1.18e-121 | 352 |
| Msa0792290 | AT5G36000.1 | 56.716 | 268 | 116 | 0 | 26 | 293 | 62 | 329 | 4.64e-115 | 335 |
| Msa0792290 | AT3G62500.1 | 49.390 | 164 | 62 | 3 | 129 | 292 | 178 | 320 | 3.96e-43 | 151 |
| Msa0792290 | AT3G62500.2 | 49.390 | 164 | 62 | 3 | 129 | 292 | 178 | 320 | 4.68e-43 | 152 |
Find 75 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTCACGGTTGTTGCTTTC+TGG | 0.121172 | 5_3:+3424045 | Msa0792290:CDS |
| GACTGAGATAGCGAAGTTTC+TGG | 0.200830 | 5_3:+3423043 | Msa0792290:CDS |
| CTCTGTGAAGACTACGAAAA+TGG | 0.226003 | 5_3:+3424440 | Msa0792290:CDS |
| CTATCATGGATGATGCTATT+TGG | 0.269492 | 5_3:+3423117 | Msa0792290:CDS |
| GATATCAAGAAACGAGCTTA+TGG | 0.282438 | 5_3:+3424494 | Msa0792290:CDS |
| AAGCTCTACACTTCAGCTTT+TGG | 0.288606 | 5_3:+3423203 | Msa0792290:CDS |
| CCGATCATTCCACTTTCTCT+TGG | 0.335528 | 5_3:+3422092 | Msa0792290:CDS |
| GAAGGTTTGATGACGACATT+TGG | 0.363041 | 5_3:+3423021 | Msa0792290:intron |
| GTACCAGCAATCCAGATTCC+AGG | 0.388870 | 5_3:-3424079 | None:intergenic |
| AAACCTGGAATCTGGATTGC+TGG | 0.401140 | 5_3:+3424076 | Msa0792290:CDS |
| ACAACATTAAACCTGGAATC+TGG | 0.402861 | 5_3:+3424068 | Msa0792290:CDS |
| ATGAAAAGCAATCATGGTCT+TGG | 0.408754 | 5_3:-3425031 | None:intergenic |
| TTTGATTACAAGTCATGGAT+TGG | 0.411304 | 5_3:+3424988 | Msa0792290:CDS |
| ATATCAAGAAACGAGCTTAT+GGG | 0.412617 | 5_3:+3424495 | Msa0792290:CDS |
| GGATTGGGAAGGATAATTAC+TGG | 0.420053 | 5_3:+3425004 | Msa0792290:CDS |
| AAGACTACGAAAATGGGAAC+TGG | 0.425872 | 5_3:+3424447 | Msa0792290:CDS |
| ATGGTTCCGCCGTGCTATCA+TGG | 0.453543 | 5_3:+3423103 | Msa0792290:CDS |
| CTCCTGCTGTCGGAACTTGT+AGG | 0.455095 | 5_3:-3423326 | None:intergenic |
| GAGAGAGAACCAAGAGAAAG+TGG | 0.458853 | 5_3:-3422101 | None:intergenic |
| CACTTGAATGCCACAGGTGG+AGG | 0.462347 | 5_3:-3423176 | None:intergenic |
| CTTCGCCGGTGGCAGTTCTC+CGG | 0.464227 | 5_3:-3422011 | None:intergenic |
| TTGATTACAAGTCATGGATT+GGG | 0.468371 | 5_3:+3424989 | Msa0792290:CDS |
| TCTGTGAAGACTACGAAAAT+GGG | 0.468614 | 5_3:+3424441 | Msa0792290:CDS |
| TGCTGCATGAAAAGCAATCA+TGG | 0.479901 | 5_3:-3425037 | None:intergenic |
| GTTAAAGAAAGAAGAAAGCA+TGG | 0.485219 | 5_3:+3424009 | Msa0792290:CDS |
| CAAGTATTGAGGTCACAAAC+CGG | 0.486887 | 5_3:-3424219 | None:intergenic |
| AAACGAGCTTATGGGGCTGC+TGG | 0.488804 | 5_3:+3424503 | Msa0792290:CDS |
| CGGTATTTGATTACAAGTCA+TGG | 0.490207 | 5_3:+3424983 | Msa0792290:CDS |
| GAAAATTCAGTCTCTCTGTC+AGG | 0.492809 | 5_3:-3423979 | None:intergenic |
| TCGGAGAGAAAGCGAGGACG+AGG | 0.497635 | 5_3:-3422073 | None:intergenic |
| CTGGCGAGTTCTTCTACGTC+TGG | 0.501579 | 5_3:+3424548 | Msa0792290:CDS |
| TCTGCAGCTTGTGCGATGCC+CGG | 0.502062 | 5_3:+3424200 | Msa0792290:CDS |
| AGGAGAGTTGCAAGAGCAGA+TGG | 0.504948 | 5_3:-3422053 | None:intergenic |
| CCAAGAGAAAGTGGAATGAT+CGG | 0.506802 | 5_3:-3422092 | None:intergenic |
| AATGCCACAGGTGGAGGAGA+TGG | 0.508135 | 5_3:-3423170 | None:intergenic |
| TCTTCTTTCTTTAACTCCCC+CGG | 0.510064 | 5_3:-3424001 | None:intergenic |
| CGGTGGCAGTTCTCCGGCGT+CGG | 0.514667 | 5_3:-3422005 | None:intergenic |
| TGGCAGTTCTCCGGCGTCGG+AGG | 0.518218 | 5_3:-3422002 | None:intergenic |
| CTCCACCTGTGGCATTCAAG+TGG | 0.519260 | 5_3:+3423177 | Msa0792290:CDS |
| CTCCTACAAGTTCCGACAGC+AGG | 0.520835 | 5_3:+3423324 | Msa0792290:CDS |
| ACTAATTTACAAGAAAATCA+AGG | 0.528332 | 5_3:+3425069 | Msa0792290:CDS |
| TTGCTCCACTTGAATGCCAC+AGG | 0.532015 | 5_3:-3423182 | None:intergenic |
| GTGGAGGAGATGGAACTTGA+AGG | 0.535718 | 5_3:-3423160 | None:intergenic |
| AATTACCATCACAAGTATTG+AGG | 0.538205 | 5_3:-3424230 | None:intergenic |
| TATAGGAACAATGCAGACAT+TGG | 0.539902 | 5_3:+3424394 | Msa0792290:intron |
| AACTGGGATTACGAGGTTGT+AGG | 0.542235 | 5_3:+3424464 | Msa0792290:CDS |
| TGAAAAGCAATCATGGTCTT+GGG | 0.544175 | 5_3:-3425030 | None:intergenic |
| AACGCTATTTCCTCCGACGC+CGG | 0.548682 | 5_3:+3421992 | Msa0792290:CDS |
| TTTCTGGACAACATTAAACC+TGG | 0.556196 | 5_3:+3424061 | Msa0792290:CDS |
| TGATAGCACGGCGGAACCAT+CGG | 0.557930 | 5_3:-3423100 | None:intergenic |
| CAATGCAGACATTGGATGCA+AGG | 0.559581 | 5_3:+3424402 | Msa0792290:CDS |
| CGTCGGATTCGCTTCGCCGG+TGG | 0.564375 | 5_3:-3422022 | None:intergenic |
| GAGGGCCACTGAAGAATCAA+AGG | 0.570525 | 5_3:-3423957 | None:intergenic |
| CTCCACTTGAATGCCACAGG+TGG | 0.571927 | 5_3:-3423179 | None:intergenic |
| AGTTCCATCTCCTCCACCTG+TGG | 0.576848 | 5_3:+3423166 | Msa0792290:CDS |
| TGGAAAGTCTCTGATAATGC+TGG | 0.577477 | 5_3:+3423067 | Msa0792290:CDS |
| TATCAAGAAACGAGCTTATG+GGG | 0.585752 | 5_3:+3424496 | Msa0792290:CDS |
| CTATCAGATTGGATGCGCAT+CGG | 0.586986 | 5_3:+3423926 | Msa0792290:intron |
| CAATGTGCTTCTCCTGCTGT+CGG | 0.593050 | 5_3:-3423336 | None:intergenic |
| CAGACGTAGAAGAACTCGCC+AGG | 0.599890 | 5_3:-3424547 | None:intergenic |
| AAGTATTGAGGTCACAAACC+GGG | 0.600506 | 5_3:-3424218 | None:intergenic |
| TGTGACCTCAATACTTGTGA+TGG | 0.607442 | 5_3:+3424225 | Msa0792290:CDS |
| GAGATAGCGAAGTTTCTGGA+TGG | 0.611982 | 5_3:+3423047 | Msa0792290:CDS |
| AATTCAGTCTCTCTGTCAGG+AGG | 0.618594 | 5_3:-3423976 | None:intergenic |
| CGACAGCAGGAGAAGCACAT+TGG | 0.619455 | 5_3:+3423337 | Msa0792290:CDS |
| GAAACTATGTTGAAGACTCA+CGG | 0.621215 | 5_3:+3424031 | Msa0792290:CDS |
| TGCTGGCAGCGACAAACCGA+TGG | 0.623760 | 5_3:+3423084 | Msa0792290:CDS |
| TAGCATCATCCATGATAGCA+CGG | 0.625465 | 5_3:-3423112 | None:intergenic |
| TTACAAGTCATGGATTGGGA+AGG | 0.625946 | 5_3:+3424993 | Msa0792290:CDS |
| CGACGCCGGAGAACTGCCAC+CGG | 0.630367 | 5_3:+3422006 | Msa0792290:CDS |
| ATTCAGTCTCTCTGTCAGGA+GGG | 0.634339 | 5_3:-3423975 | None:intergenic |
| AGACTACGAAAATGGGAACT+GGG | 0.645326 | 5_3:+3424448 | Msa0792290:CDS |
| GAATGATCGGAGAGAAAGCG+AGG | 0.656826 | 5_3:-3422079 | None:intergenic |
| AAATGGGAACTGGGATTACG+AGG | 0.675337 | 5_3:+3424457 | Msa0792290:CDS |
| CATCATCCATGATAGCACGG+CGG | 0.806408 | 5_3:-3423109 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATCTATAGAAAATA+TGG | - | chr5_3:3422974-3422993 | None:intergenic | 10.0% |
| !! | AATTACATTTATATAGAATA+TGG | - | chr5_3:3423721-3423740 | None:intergenic | 10.0% |
| !!! | GTTTTAATCTTTAAATTAAA+TGG | + | chr5_3:3424957-3424976 | Msa0792290:intron | 10.0% |
| !!! | TTTTCTATAACTTTTATATC+TGG | + | chr5_3:3422819-3422838 | Msa0792290:intron | 15.0% |
| !!! | AGAAATTCAGTTTGAATTTT+CGG | + | chr5_3:3422256-3422275 | Msa0792290:intron | 20.0% |
| !! | TCAAATATTCGAAATCAAAT+CGG | - | chr5_3:3422571-3422590 | None:intergenic | 20.0% |
| !! | TATCTGGAAATAATCAATTA+AGG | + | chr5_3:3422835-3422854 | Msa0792290:intron | 20.0% |
| !! | TTTCGAAATCAATGTTAATT+AGG | - | chr5_3:3423281-3423300 | None:intergenic | 20.0% |
| !!! | ATTAACATTGATTTCGAAAT+TGG | + | chr5_3:3423282-3423301 | Msa0792290:intron | 20.0% |
| !!! | AGTTAATGCTTTTTATCATT+TGG | + | chr5_3:3423472-3423491 | Msa0792290:intron | 20.0% |
| !!! | GTTAATGCTTTTTATCATTT+GGG | + | chr5_3:3423473-3423492 | Msa0792290:intron | 20.0% |
| !! | TATCATTTGGGAATATTAAA+AGG | + | chr5_3:3423485-3423504 | Msa0792290:intron | 20.0% |
| !! | ATCATTTGGGAATATTAAAA+GGG | + | chr5_3:3423486-3423505 | Msa0792290:intron | 20.0% |
| !! | TATAATATGTTCTATCAGAT+TGG | + | chr5_3:3423915-3423934 | Msa0792290:intron | 20.0% |
| !! | CTTAAAGAAAAACATTAACA+AGG | - | chr5_3:3424615-3424634 | None:intergenic | 20.0% |
| !! | AGAGTAGAAACATATATATA+TGG | + | chr5_3:3424697-3424716 | Msa0792290:intron | 20.0% |
| !!! | TTTTGAAATTAATTTGTTCC+TGG | - | chr5_3:3424797-3424816 | None:intergenic | 20.0% |
| !! | ACTAATTTACAAGAAAATCA+AGG | + | chr5_3:3425069-3425088 | Msa0792290:CDS | 20.0% |
| !!! | ATGAAGTTTTTGAGTTTTGA+CGG | + | chr5_3:3422522-3422541 | Msa0792290:intron | 25.0% |
| ! | TGTGAATCTCACAATATATT+AGG | - | chr5_3:3423389-3423408 | None:intergenic | 25.0% |
| ! | TTATGGAAATGAATTTGAGA+TGG | + | chr5_3:3423436-3423455 | Msa0792290:intron | 25.0% |
| ! | TATAAGAATGAATCAGTCAA+TGG | - | chr5_3:3423807-3423826 | None:intergenic | 25.0% |
| ! | GTTATATTGTCAAAGATAAC+TGG | - | chr5_3:3424108-3424127 | None:intergenic | 25.0% |
| !! | TGAATTATTCATGGTGTTAA+GGG | - | chr5_3:3424284-3424303 | None:intergenic | 25.0% |
| !! | ATGAATTATTCATGGTGTTA+AGG | - | chr5_3:3424285-3424304 | None:intergenic | 25.0% |
| !!! | CTTTTTACCAGTTTAAGTTA+AGG | + | chr5_3:3424728-3424747 | Msa0792290:intron | 25.0% |
| ! | ATCTTTAAATTAAATGGCAG+CGG | + | chr5_3:3424963-3424982 | Msa0792290:intron | 25.0% |
| !! | TGCTAGAAGCATTTGAAAAT+CGG | + | chr5_3:3422444-3422463 | Msa0792290:intron | 30.0% |
| TTAATCCGAATGCTTAATGA+AGG | + | chr5_3:3423003-3423022 | Msa0792290:intron | 30.0% | |
| TCAAACCTTCATTAAGCATT+CGG | - | chr5_3:3423011-3423030 | None:intergenic | 30.0% | |
| TCGAAATTGGAAATTTCAGA+TGG | + | chr5_3:3423295-3423314 | Msa0792290:intron | 30.0% | |
| CGAAATTGGAAATTTCAGAT+GGG | + | chr5_3:3423296-3423315 | Msa0792290:intron | 30.0% | |
| !! | GATAAAAAGCATTAACTGTG+CGG | - | chr5_3:3423469-3423488 | None:intergenic | 30.0% |
| CTGACAATGATATATGTACA+TGG | + | chr5_3:3423670-3423689 | Msa0792290:intron | 30.0% | |
| ! | GGAATTTTGCATAAGCAATA+AGG | - | chr5_3:3423700-3423719 | None:intergenic | 30.0% |
| TCAATGGTTGGATAAATTCT+AGG | - | chr5_3:3423791-3423810 | None:intergenic | 30.0% | |
| ! | TTTTTCCTTTGATTCTTCAG+TGG | + | chr5_3:3423952-3423971 | Msa0792290:CDS | 30.0% |
| GTTAAAGAAAGAAGAAAGCA+TGG | + | chr5_3:3424009-3424028 | Msa0792290:CDS | 30.0% | |
| ! | AATTACCATCACAAGTATTG+AGG | - | chr5_3:3424233-3424252 | None:intergenic | 30.0% |
| AAGGGATATACAAAACTCAT+TGG | - | chr5_3:3424266-3424285 | None:intergenic | 30.0% | |
| AACCACTGATGAATTATTCA+TGG | - | chr5_3:3424293-3424312 | None:intergenic | 30.0% | |
| ATATCAAGAAACGAGCTTAT+GGG | + | chr5_3:3424495-3424514 | Msa0792290:CDS | 30.0% | |
| AATGACATGACATTAGATTG+TGG | - | chr5_3:3424650-3424669 | None:intergenic | 30.0% | |
| AATGAATGTATAGATAGTCC+AGG | + | chr5_3:3424776-3424795 | Msa0792290:intron | 30.0% | |
| TAGTAACTATCTTCTTGGAA+GGG | - | chr5_3:3424907-3424926 | None:intergenic | 30.0% | |
| TTAGTAACTATCTTCTTGGA+AGG | - | chr5_3:3424908-3424927 | None:intergenic | 30.0% | |
| GAACTTAGTAACTATCTTCT+TGG | - | chr5_3:3424912-3424931 | None:intergenic | 30.0% | |
| AGAAGATAGTTACTAAGTTC+TGG | + | chr5_3:3424912-3424931 | Msa0792290:intron | 30.0% | |
| TTTGATTACAAGTCATGGAT+TGG | + | chr5_3:3424988-3425007 | Msa0792290:CDS | 30.0% | |
| TTGATTACAAGTCATGGATT+GGG | + | chr5_3:3424989-3425008 | Msa0792290:CDS | 30.0% | |
| AGCTATAGAAAATTAGCGAG+TGG | - | chr5_3:3422887-3422906 | None:intergenic | 35.0% | |
| CTATCATGGATGATGCTATT+TGG | + | chr5_3:3423117-3423136 | Msa0792290:CDS | 35.0% | |
| ATAGATTCCACACACAGTTA+TGG | + | chr5_3:3423419-3423438 | Msa0792290:intron | 35.0% | |
| TTCATTTCCATAACTGTGTG+TGG | - | chr5_3:3423429-3423448 | None:intergenic | 35.0% | |
| AGAATGAATCAGTCAATGGT+TGG | - | chr5_3:3423803-3423822 | None:intergenic | 35.0% | |
| GAAACTATGTTGAAGACTCA+CGG | + | chr5_3:3424031-3424050 | Msa0792290:CDS | 35.0% | |
| TTTCTGGACAACATTAAACC+TGG | + | chr5_3:3424061-3424080 | Msa0792290:CDS | 35.0% | |
| ACAACATTAAACCTGGAATC+TGG | + | chr5_3:3424068-3424087 | Msa0792290:CDS | 35.0% | |
| CACCATGAATAATTCATCAG+TGG | + | chr5_3:3424288-3424307 | Msa0792290:intron | 35.0% | |
| ! | GTTACTGTTTTGTACTGCAA+GGG | + | chr5_3:3424310-3424329 | Msa0792290:intron | 35.0% |
| GGGTTTGCGTTAGAATAATA+TGG | + | chr5_3:3424330-3424349 | Msa0792290:intron | 35.0% | |
| CATGTTTCTCCTGCTTATAT+AGG | + | chr5_3:3424377-3424396 | Msa0792290:intron | 35.0% | |
| TGCATTGTTCCTATATAAGC+AGG | - | chr5_3:3424389-3424408 | None:intergenic | 35.0% | |
| TATAGGAACAATGCAGACAT+TGG | + | chr5_3:3424394-3424413 | Msa0792290:intron | 35.0% | |
| TCTGTGAAGACTACGAAAAT+GGG | + | chr5_3:3424441-3424460 | Msa0792290:CDS | 35.0% | |
| GATATCAAGAAACGAGCTTA+TGG | + | chr5_3:3424494-3424513 | Msa0792290:CDS | 35.0% | |
| TATCAAGAAACGAGCTTATG+GGG | + | chr5_3:3424496-3424515 | Msa0792290:CDS | 35.0% | |
| CAGGTGTTTCACATCAAAAA+TGG | - | chr5_3:3424531-3424550 | None:intergenic | 35.0% | |
| ! | CATTTTTGATGTGAAACACC+TGG | + | chr5_3:3424529-3424548 | Msa0792290:CDS | 35.0% |
| TGCGTAACCTTAACTTAAAC+TGG | - | chr5_3:3424738-3424757 | None:intergenic | 35.0% | |
| CGGTATTTGATTACAAGTCA+TGG | + | chr5_3:3424983-3425002 | Msa0792290:CDS | 35.0% | |
| TGAAAAGCAATCATGGTCTT+GGG | - | chr5_3:3425033-3425052 | None:intergenic | 35.0% | |
| ATGAAAAGCAATCATGGTCT+TGG | - | chr5_3:3425034-3425053 | None:intergenic | 35.0% | |
| !!! | AGCAGATGGTTTTGTTACGT+CGG | - | chr5_3:3422042-3422061 | None:intergenic | 40.0% |
| CCAAGAGAAAGTGGAATGAT+CGG | - | chr5_3:3422095-3422114 | None:intergenic | 40.0% | |
| !! | GAAGGTTTGATGACGACATT+TGG | + | chr5_3:3423021-3423040 | Msa0792290:intron | 40.0% |
| ! | TGGAAAGTCTCTGATAATGC+TGG | + | chr5_3:3423067-3423086 | Msa0792290:CDS | 40.0% |
| TAGCATCATCCATGATAGCA+CGG | - | chr5_3:3423115-3423134 | None:intergenic | 40.0% | |
| ! | AAGCTCTACACTTCAGCTTT+TGG | + | chr5_3:3423203-3423222 | Msa0792290:CDS | 40.0% |
| GGAATATTAAAAGGGCAACC+CGG | + | chr5_3:3423494-3423513 | Msa0792290:intron | 40.0% | |
| ! | AGAAGATTGATGACTCACAC+AGG | - | chr5_3:3423601-3423620 | None:intergenic | 40.0% |
| CAGCAACTCTTGTCAATCTA+AGG | - | chr5_3:3423632-3423651 | None:intergenic | 40.0% | |
| GAAAATTCAGTCTCTCTGTC+AGG | - | chr5_3:3423982-3424001 | None:intergenic | 40.0% | |
| ! | GACAGAGAGACTGAATTTTC+CGG | + | chr5_3:3423982-3424001 | Msa0792290:CDS | 40.0% |
| ! | ACAGAGAGACTGAATTTTCC+GGG | + | chr5_3:3423983-3424002 | Msa0792290:CDS | 40.0% |
| TCTTCTTTCTTTAACTCCCC+CGG | - | chr5_3:3424004-3424023 | None:intergenic | 40.0% | |
| !! | AAGTATTGAGGTCACAAACC+GGG | - | chr5_3:3424221-3424240 | None:intergenic | 40.0% |
| !! | CAAGTATTGAGGTCACAAAC+CGG | - | chr5_3:3424222-3424241 | None:intergenic | 40.0% |
| TGTGACCTCAATACTTGTGA+TGG | + | chr5_3:3424225-3424244 | Msa0792290:CDS | 40.0% | |
| ! | GGTTACTGTTTTGTACTGCA+AGG | + | chr5_3:3424309-3424328 | Msa0792290:intron | 40.0% |
| ! | CATTTTCGTAGTCTTCACAG+AGG | - | chr5_3:3424442-3424461 | None:intergenic | 40.0% |
| CTCTGTGAAGACTACGAAAA+TGG | + | chr5_3:3424440-3424459 | Msa0792290:CDS | 40.0% | |
| AAGACTACGAAAATGGGAAC+TGG | + | chr5_3:3424447-3424466 | Msa0792290:CDS | 40.0% | |
| AGACTACGAAAATGGGAACT+GGG | + | chr5_3:3424448-3424467 | Msa0792290:CDS | 40.0% | |
| CTCCGAATGATTCTTGGTTT+GGG | + | chr5_3:3424829-3424848 | Msa0792290:intron | 40.0% | |
| ! | TCCGAATGATTCTTGGTTTG+GGG | + | chr5_3:3424830-3424849 | Msa0792290:intron | 40.0% |
| TCCCCAAACCAAGAATCATT+CGG | - | chr5_3:3424834-3424853 | None:intergenic | 40.0% | |
| !! | TTACAAGTCATGGATTGGGA+AGG | + | chr5_3:3424993-3425012 | Msa0792290:CDS | 40.0% |
| GGATTGGGAAGGATAATTAC+TGG | + | chr5_3:3425004-3425023 | Msa0792290:CDS | 40.0% | |
| TGCTGCATGAAAAGCAATCA+TGG | - | chr5_3:3425040-3425059 | None:intergenic | 40.0% | |
| CCGATCATTCCACTTTCTCT+TGG | + | chr5_3:3422092-3422111 | Msa0792290:CDS | 45.0% | |
| GAGAGAGAACCAAGAGAAAG+TGG | - | chr5_3:3422104-3422123 | None:intergenic | 45.0% | |
| GACTGAGATAGCGAAGTTTC+TGG | + | chr5_3:3423043-3423062 | Msa0792290:CDS | 45.0% | |
| ! | GAGATAGCGAAGTTTCTGGA+TGG | + | chr5_3:3423047-3423066 | Msa0792290:CDS | 45.0% |
| GAACATCGATGAACGCGTAT+AGG | - | chr5_3:3423238-3423257 | None:intergenic | 45.0% | |
| CTATCAGATTGGATGCGCAT+CGG | + | chr5_3:3423926-3423945 | Msa0792290:intron | 45.0% | |
| ATTCAGTCTCTCTGTCAGGA+GGG | - | chr5_3:3423978-3423997 | None:intergenic | 45.0% | |
| AATTCAGTCTCTCTGTCAGG+AGG | - | chr5_3:3423979-3423998 | None:intergenic | 45.0% | |
| ! | CAGAGAGACTGAATTTTCCG+GGG | + | chr5_3:3423984-3424003 | Msa0792290:CDS | 45.0% |
| ! | AGAGAGACTGAATTTTCCGG+GGG | + | chr5_3:3423985-3424004 | Msa0792290:CDS | 45.0% |
| AAACCTGGAATCTGGATTGC+TGG | + | chr5_3:3424076-3424095 | Msa0792290:CDS | 45.0% | |
| CAATGCAGACATTGGATGCA+AGG | + | chr5_3:3424402-3424421 | Msa0792290:CDS | 45.0% | |
| AAATGGGAACTGGGATTACG+AGG | + | chr5_3:3424457-3424476 | Msa0792290:CDS | 45.0% | |
| AACTGGGATTACGAGGTTGT+AGG | + | chr5_3:3424464-3424483 | Msa0792290:CDS | 45.0% | |
| GTCAACTTACCAACAGTCAG+TGG | + | chr5_3:3424589-3424608 | Msa0792290:intron | 45.0% | |
| ! | TTAACAAGGCCACTGACTGT+TGG | - | chr5_3:3424601-3424620 | None:intergenic | 45.0% |
| TGAAGCCTCCGAATGATTCT+TGG | + | chr5_3:3424823-3424842 | Msa0792290:intron | 45.0% | |
| CCAAACCAAGAATCATTCGG+AGG | - | chr5_3:3424831-3424850 | None:intergenic | 45.0% | |
| CCTCCGAATGATTCTTGGTT+TGG | + | chr5_3:3424828-3424847 | Msa0792290:intron | 45.0% | |
| AGGAGAGTTGCAAGAGCAGA+TGG | - | chr5_3:3422056-3422075 | None:intergenic | 50.0% | |
| GAATGATCGGAGAGAAAGCG+AGG | - | chr5_3:3422082-3422101 | None:intergenic | 50.0% | |
| CATCATCCATGATAGCACGG+CGG | - | chr5_3:3423112-3423131 | None:intergenic | 50.0% | |
| GTGGAGGAGATGGAACTTGA+AGG | - | chr5_3:3423163-3423182 | None:intergenic | 50.0% | |
| TTGCTCCACTTGAATGCCAC+AGG | - | chr5_3:3423185-3423204 | None:intergenic | 50.0% | |
| CAATGTGCTTCTCCTGCTGT+CGG | - | chr5_3:3423339-3423358 | None:intergenic | 50.0% | |
| TCCCAAATGCTTCAGTGCAC+CGG | - | chr5_3:3423516-3423535 | None:intergenic | 50.0% | |
| GAGGGCCACTGAAGAATCAA+AGG | - | chr5_3:3423960-3423979 | None:intergenic | 50.0% | |
| !! | GACTCACGGTTGTTGCTTTC+TGG | + | chr5_3:3424045-3424064 | Msa0792290:CDS | 50.0% |
| GTACCAGCAATCCAGATTCC+AGG | - | chr5_3:3424082-3424101 | None:intergenic | 50.0% | |
| ! | AACGCTATTTCCTCCGACGC+CGG | + | chr5_3:3421992-3422011 | Msa0792290:CDS | 55.0% |
| TTACGTCGGATTCGCTTCGC+CGG | - | chr5_3:3422028-3422047 | None:intergenic | 55.0% | |
| TGATAGCACGGCGGAACCAT+CGG | - | chr5_3:3423103-3423122 | None:intergenic | 55.0% | |
| ATGGTTCCGCCGTGCTATCA+TGG | + | chr5_3:3423103-3423122 | Msa0792290:CDS | 55.0% | |
| AGTTCCATCTCCTCCACCTG+TGG | + | chr5_3:3423166-3423185 | Msa0792290:CDS | 55.0% | |
| AATGCCACAGGTGGAGGAGA+TGG | - | chr5_3:3423173-3423192 | None:intergenic | 55.0% | |
| CACTTGAATGCCACAGGTGG+AGG | - | chr5_3:3423179-3423198 | None:intergenic | 55.0% | |
| CTCCACCTGTGGCATTCAAG+TGG | + | chr5_3:3423177-3423196 | Msa0792290:CDS | 55.0% | |
| CTCCACTTGAATGCCACAGG+TGG | - | chr5_3:3423182-3423201 | None:intergenic | 55.0% | |
| CTCCTACAAGTTCCGACAGC+AGG | + | chr5_3:3423324-3423343 | Msa0792290:CDS | 55.0% | |
| CTCCTGCTGTCGGAACTTGT+AGG | - | chr5_3:3423329-3423348 | None:intergenic | 55.0% | |
| ! | CGACAGCAGGAGAAGCACAT+TGG | + | chr5_3:3423337-3423356 | Msa0792290:CDS | 55.0% |
| ! | ACCCGGTGCACTGAAGCATT+TGG | + | chr5_3:3423511-3423530 | Msa0792290:intron | 55.0% |
| CCCAAATGCTTCAGTGCACC+GGG | - | chr5_3:3423515-3423534 | None:intergenic | 55.0% | |
| ! | CCCGGTGCACTGAAGCATTT+GGG | + | chr5_3:3423512-3423531 | Msa0792290:intron | 55.0% |
| AAACGAGCTTATGGGGCTGC+TGG | + | chr5_3:3424503-3424522 | Msa0792290:CDS | 55.0% | |
| CAGACGTAGAAGAACTCGCC+AGG | - | chr5_3:3424550-3424569 | None:intergenic | 55.0% | |
| CTGGCGAGTTCTTCTACGTC+TGG | + | chr5_3:3424548-3424567 | Msa0792290:CDS | 55.0% | |
| TCGGAGAGAAAGCGAGGACG+AGG | - | chr5_3:3422076-3422095 | None:intergenic | 60.0% | |
| TGCTGGCAGCGACAAACCGA+TGG | + | chr5_3:3423084-3423103 | Msa0792290:CDS | 60.0% | |
| TCTGCAGCTTGTGCGATGCC+CGG | + | chr5_3:3424200-3424219 | Msa0792290:CDS | 60.0% | |
| CTTCGCCGGTGGCAGTTCTC+CGG | - | chr5_3:3422014-3422033 | None:intergenic | 65.0% | |
| ! | TGGCAGTTCTCCGGCGTCGG+AGG | - | chr5_3:3422005-3422024 | None:intergenic | 70.0% |
| CGGTGGCAGTTCTCCGGCGT+CGG | - | chr5_3:3422008-3422027 | None:intergenic | 70.0% | |
| CGACGCCGGAGAACTGCCAC+CGG | + | chr5_3:3422006-3422025 | Msa0792290:CDS | 70.0% | |
| CGTCGGATTCGCTTCGCCGG+TGG | - | chr5_3:3422025-3422044 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 3421974 | 3425095 | 3421974 | ID=Msa0792290;Name=Msa0792290 |
| chr5_3 | mRNA | 3421974 | 3425095 | 3421974 | ID=Msa0792290-mRNA-1;Parent=Msa0792290;Name=Msa0792290-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0|0|1|1|1|7|0|293 |
| chr5_3 | exon | 3421974 | 3422113 | 3421974 | ID=Msa0792290-mRNA-1:exon:1511;Parent=Msa0792290-mRNA-1 |
| chr5_3 | exon | 3423025 | 3423224 | 3423025 | ID=Msa0792290-mRNA-1:exon:1512;Parent=Msa0792290-mRNA-1 |
| chr5_3 | exon | 3423314 | 3423358 | 3423314 | ID=Msa0792290-mRNA-1:exon:1513;Parent=Msa0792290-mRNA-1 |
| chr5_3 | exon | 3423933 | 3424097 | 3423933 | ID=Msa0792290-mRNA-1:exon:1514;Parent=Msa0792290-mRNA-1 |
| chr5_3 | exon | 3424199 | 3424246 | 3424199 | ID=Msa0792290-mRNA-1:exon:1515;Parent=Msa0792290-mRNA-1 |
| chr5_3 | exon | 3424399 | 3424569 | 3424399 | ID=Msa0792290-mRNA-1:exon:1516;Parent=Msa0792290-mRNA-1 |
| chr5_3 | exon | 3424983 | 3425095 | 3424983 | ID=Msa0792290-mRNA-1:exon:1517;Parent=Msa0792290-mRNA-1 |
| chr5_3 | CDS | 3421974 | 3422113 | 3421974 | ID=Msa0792290-mRNA-1:cds;Parent=Msa0792290-mRNA-1 |
| chr5_3 | CDS | 3423025 | 3423224 | 3423025 | ID=Msa0792290-mRNA-1:cds;Parent=Msa0792290-mRNA-1 |
| chr5_3 | CDS | 3423314 | 3423358 | 3423314 | ID=Msa0792290-mRNA-1:cds;Parent=Msa0792290-mRNA-1 |
| chr5_3 | CDS | 3423933 | 3424097 | 3423933 | ID=Msa0792290-mRNA-1:cds;Parent=Msa0792290-mRNA-1 |
| chr5_3 | CDS | 3424199 | 3424246 | 3424199 | ID=Msa0792290-mRNA-1:cds;Parent=Msa0792290-mRNA-1 |
| chr5_3 | CDS | 3424399 | 3424569 | 3424399 | ID=Msa0792290-mRNA-1:cds;Parent=Msa0792290-mRNA-1 |
| chr5_3 | CDS | 3424983 | 3425095 | 3424983 | ID=Msa0792290-mRNA-1:cds;Parent=Msa0792290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
