AlfalfaGEDB | Msa0968920

M. sativa cultivar zhongmu-4 / Msa0968920

KEGG: K14328|K17265|K19718
GO: GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000932 GO:0001654 GO:0001736 GO:0001738 GO:0001745 GO:0001751 GO:0001752 GO:0001754 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003678 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004003 GO:0004004 GO:0004386 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006396 GO:0006397 GO:0006464 GO:0006508 GO:0006725 GO:0006807 GO:0006914 GO:0006996 GO:0007154 GO:0007163 GO:0007164 GO:0007165 GO:0007253 GO:0007264 GO:0007265 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007399 GO:0007423 GO:0008026 GO:0008069 GO:0008094 GO:0008104 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009056 GO:0009653 GO:0009798 GO:0009887 GO:0009888 GO:0009889 GO:0009893 GO:0009950 GO:0009953 GO:0009966 GO:0009968 GO:0009987 GO:0010467 GO:0010468 GO:0010494 GO:0010556 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0016043 GO:0016070 GO:0016071 GO:0016236 GO:0016318 GO:0016333 GO:0016334 GO:0016462 GO:0016579 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030154 GO:0030159 GO:0030178 GO:0030182 GO:0030707 GO:0030855 GO:0031323 GO:0031326 GO:0032088 GO:0032386 GO:0032392 GO:0032501 GO:0032502 GO:0032504 GO:0032508 GO:0032879 GO:0032947 GO:0032991 GO:0033036 GO:0034063 GO:0034517 GO:0034622 GO:0034641 GO:0035556 GO:0035770 GO:0035973 GO:0036211 GO:0036464 GO:0040008 GO:0042067 GO:0042623 GO:0042706 GO:0042994 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043433 GO:0043933 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044877 GO:0045165 GO:0045185 GO:0045570 GO:0045571 GO:0045926 GO:0046483 GO:0046530 GO:0046552 GO:0046620 GO:0046621 GO:0048468 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048592 GO:0048609 GO:0048638 GO:0048640 GO:0048663 GO:0048699 GO:0048729 GO:0048731 GO:0048749 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051090 GO:0051093 GO:0051171 GO:0051179 GO:0051220 GO:0051235 GO:0051239 GO:0051241 GO:0051252 GO:0051276 GO:0051704 GO:0051716 GO:0060255 GO:0060341 GO:0060429 GO:0060627 GO:0060628 GO:0060828 GO:0061912 GO:0061919 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070035 GO:0070646 GO:0070647 GO:0070925 GO:0071103 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090090 GO:0090304 GO:0090596 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363 GO:1901564 GO:1903506 GO:1905538 GO:1990861 GO:1990904 GO:2000026 GO:2000112 GO:2000156 GO:2001141
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0968920	ACK38192.1	94.737	57	3	0	1	57	1	57	6.25e-28	109

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0968920	B7ZWR4	94.737	57	3	0	1	57	1	57	2.98e-28	109

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0079920	Msa0968920	0.804294	2.314984e-49	-8.615850e-47
Msa0664540	Msa0968920	0.803400	3.549769e-49	-8.615850e-47
Msa0322900	Msa0968920	0.800076	1.707779e-48	-8.615850e-47
Msa0968920	Msa1127540	0.802283	6.038648e-49	-8.615850e-47
Msa0968920	Msa1161480	0.813080	3.067471e-51	-8.615850e-47
Msa0968920	Msa1443310	0.804027	2.630909e-49	-8.615850e-47
Msa0968920	Msa1450720	0.808506	2.995194e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0968920	MtrunA17_Chr7g0262051	94.737	57	3	0	1	57	1	57	1.16e-30	110
Msa0968920	MtrunA17_Chr1g0168741	58.000	50	21	0	8	57	9	58	5.59e-16	69.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0968920	AT5G43960.1	68.750	48	15	0	10	57	8	55	4.68e-17	73.2

Find 8 sgRNAs with CRISPR-Local

Find 16 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGCAACTATGGCTTCGTATC+AGG	0.247670	6_4:+334058	None:intergenic
GCAGGTTGGTTCTTACTTTG+TGG	0.349830	6_4:+334202	Msa0968920:intron
CAGGTTGGTTCTTACTTTGT+GGG	0.371768	6_4:+334203	Msa0968920:intron
TAAAAGTGATAAACATGATC+AGG	0.437939	6_4:-334254	None:intergenic
AGTTCGATGATTCGTGTTGA+CGG	0.487457	6_4:+334287	Msa0968920:CDS
GGGTTCAGTTAGTGCTGCCC+AGG	0.498131	6_4:+334079	Msa0968920:CDS
GCAACTATGGCTTCGTATCA+GGG	0.517260	6_4:+334059	None:intergenic
TGAGACTGCATCTGATGTCT+TGG	0.544441	6_4:+334319	Msa0968920:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTTTTTTCAATTGTTTTA+GGG	+	chr6_4:334372-334391	Msa0968920:intron	10.0%
!!	AAAGAAATAAATAAAAACCT+GGG	-	chr6_4:334099-334118	None:intergenic	15.0%
!!	TAAAGAAATAAATAAAAACC+TGG	-	chr6_4:334100-334119	None:intergenic	15.0%
!!!	CTTTTTTTTTCAATTGTTTT+AGG	+	chr6_4:334371-334390	Msa0968920:intron	15.0%
!!!	ATTTTTTTTATGTGGATTCT+TGG	+	chr6_4:334137-334156	Msa0968920:intron	20.0%
!	TAAAAGTGATAAACATGATC+AGG	-	chr6_4:334257-334276	None:intergenic	25.0%
	TTGGATTTGTGTGAATTGAT+AGG	+	chr6_4:334156-334175	Msa0968920:intron	30.0%
	TGGATTTGTGTGAATTGATA+GGG	+	chr6_4:334157-334176	Msa0968920:intron	30.0%
!!	TGTTTGTTTGATTGATTTGC+AGG	+	chr6_4:334184-334203	Msa0968920:intron	30.0%
!!	TGTTTGATTGATTTGCAGGT+TGG	+	chr6_4:334188-334207	Msa0968920:intron	35.0%
!!	CAGGTTGGTTCTTACTTTGT+GGG	+	chr6_4:334203-334222	Msa0968920:intron	40.0%
	AGTTCGATGATTCGTGTTGA+CGG	+	chr6_4:334287-334306	Msa0968920:CDS	40.0%
!!	GCAGGTTGGTTCTTACTTTG+TGG	+	chr6_4:334202-334221	Msa0968920:intron	45.0%
	TGAGACTGCATCTGATGTCT+TGG	+	chr6_4:334319-334338	Msa0968920:CDS	45.0%
!!!	TAAATTTTATTTTTTTTATG+TGG	+	chr6_4:334129-334148	Msa0968920:intron	5.0%
	GGGTTCAGTTAGTGCTGCCC+AGG	+	chr6_4:334079-334098	Msa0968920:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	334065	334407	334065	ID=Msa0968920;Name=Msa0968920
chr6_4	mRNA	334065	334407	334065	ID=Msa0968920-mRNA-1;Parent=Msa0968920;Name=Msa0968920-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0\|0\|0\|0.33\|1\|1\|3\|0\|61
chr6_4	exon	334065	334100	334065	ID=Msa0968920-mRNA-1:exon:209;Parent=Msa0968920-mRNA-1
chr6_4	exon	334206	334340	334206	ID=Msa0968920-mRNA-1:exon:210;Parent=Msa0968920-mRNA-1
chr6_4	exon	334393	334407	334393	ID=Msa0968920-mRNA-1:exon:211;Parent=Msa0968920-mRNA-1
chr6_4	CDS	334065	334100	334065	ID=Msa0968920-mRNA-1:cds;Parent=Msa0968920-mRNA-1
chr6_4	CDS	334206	334340	334206	ID=Msa0968920-mRNA-1:cds;Parent=Msa0968920-mRNA-1
chr6_4	CDS	334393	334407	334393	ID=Msa0968920-mRNA-1:cds;Parent=Msa0968920-mRNA-1

Gene Sequence	>Msa0968920 ATGGCTTCGTATCAGGGTTCAGTTAGTGCTGCCCAGGTTGGTTCTTACTTTGTGGGACAGTACTATCAAGTTCTGCGTCAACAACCTGATCATGTTTATCACTTTTATTCTGATTCGAGTTCGATGATTCGTGTTGACGGTGATTATACTGAGACTGCATCTGATGTCTTGGGTTTTAGAATTTAA
Protein sequence	>Msa0968920 MASYQGSVSAAQVGSYFVGQYYQVLRQQPDHVYHFYSDSSSMIRVDGDYTETASDVLGFRI*