AlfalfaGEDB | Msa0322900

M. sativa cultivar zhongmu-4 / Msa0322900

KEGG: K17268
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005798 GO:0005829 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0098588 GO:0098796 GO:0098805
PFAM: PF04733.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0322900	XP_013463088.1	98.616	289	4	0	1	289	1	289	0.0	591

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0322900	sp\|Q9SA78\|COPE1_ARATH	74.740	289	73	0	1	289	4	292	2.10e-168	471

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000880	Msa0322900	0.858068	1.061593e-62	-8.615850e-47
Msa0000910	Msa0322900	0.816827	4.524008e-52	-8.615850e-47
Msa0001450	Msa0322900	0.832432	9.486546e-56	-8.615850e-47
Msa0001940	Msa0322900	0.805759	1.143112e-49	-8.615850e-47
Msa0002560	Msa0322900	0.820577	6.374882e-53	-8.615850e-47
Msa0002680	Msa0322900	0.870081	1.910578e-66	-8.615850e-47
Msa0002710	Msa0322900	0.836016	1.197724e-56	-8.615850e-47
Msa0003220	Msa0322900	0.848971	4.361523e-60	-8.615850e-47
Msa0003270	Msa0322900	0.815890	7.331124e-52	-8.615850e-47
Msa0003700	Msa0322900	0.801636	8.202398e-49	-8.615850e-47

Showing 1 to 10 of 1,546 entries

Previous1 2 3 4 5…155Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0322900	MtrunA17_Chr2g0293551	98.616	289	4	0	1	289	1	289	0.0	591

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0322900	AT1G30630.1	74.740	289	73	1	289	4	292	2.14e-169	471
Msa0322900	AT2G34840.1	75.347	288	71	2	289	6	293	2.21e-169	471
Msa0322900	AT2G34840.2	75.701	214	52	76	289	1	214	1.31e-125	357

Showing 1 to 3 of 3 entries

Previous1Next

Find 74 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTTTATTAAGATGCAT+AGG	0.590426	2_4:-26475521	Msa0322900:CDS
AACCATCTTCTAAATCATTC+AGG	0.343553	2_4:-26473993	Msa0322900:intron
ACAAGATTTGCCAGTGTTTC+TGG	0.104502	2_4:+26474039	None:intergenic
ACATTTACCCAATTGATTAT+GGG	0.350179	2_4:+26472450	None:intergenic
AGATCATGTACTGGTCAAGA+GGG	0.649201	2_4:-26472611	Msa0322900:CDS
AGGAGCAGAATCGTTGATTT+CGG	0.403329	2_4:+26476143	None:intergenic
AGTTGTTGCGGAGGTTGAAG+AGG	0.528845	2_4:+26476298	None:intergenic
ATAGAGAGCGAGCAATTTAA+CGG	0.433280	2_4:+26476107	None:intergenic
ATGATGAATTTGTGTAGTAC+TGG	0.464217	2_4:+26476365	None:intergenic
ATTATGCTGAGAGACAGCTT+AGG	0.588117	2_4:-26475494	Msa0322900:CDS

Showing 1 to 10 of 74 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATGATGAATTTGTGTAGTAC+TGG	+	chr2_4:26472325-26472344	None:intergenic	30.0%
GAAATTGTAACCTTTGAATC+GGG	+	chr2_4:26472615-26472634	None:intergenic	30.0%
GATATGACATATCAGATTGA+TGG	+	chr2_4:26472926-26472945	None:intergenic	30.0%
TATTATTCATAAGCCTGTCA+AGG	+	chr2_4:26473746-26473765	None:intergenic	30.0%
ACTCATCTAAATGAGATAAC+AGG	+	chr2_4:26474413-26474432	None:intergenic	30.0%
CAAACAACTGAAAATTGGAA+AGG	+	chr2_4:26474473-26474492	None:intergenic	30.0%
TTGCTAAAGTAGAGTTTGAT+AGG	-	chr2_4:26474551-26474570	Msa0322900:intron	30.0%
TGCTAAAGTAGAGTTTGATA+GGG	-	chr2_4:26474552-26474571	Msa0322900:intron	30.0%
GAGTTTGATAGGGTAATTAT+TGG	-	chr2_4:26474562-26474581	Msa0322900:intron	30.0%
AACCATCTTCTAAATCATTC+AGG	-	chr2_4:26474694-26474713	Msa0322900:intron	30.0%

Showing 1 to 10 of 227 entries

Previous1 2 3 4 5…23Next

Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	26472227	26476482	26472227	ID=Msa0322900;Name=Msa0322900
chr2_4	mRNA	26472227	26476482	26472227	ID=Msa0322900-mRNA-1;Parent=Msa0322900;Name=Msa0322900-mRNA-1;_AED=0.02;_eAED=0.02;_QI=145\|1\|1\|1\|1\|1\|6\|334\|289
chr2_4	exon	26472227	26472654	26472227	ID=Msa0322900-mRNA-1:exon:9194;Parent=Msa0322900-mRNA-1
chr2_4	exon	26473994	26474073	26473994	ID=Msa0322900-mRNA-1:exon:9193;Parent=Msa0322900-mRNA-1
chr2_4	exon	26474368	26474523	26474368	ID=Msa0322900-mRNA-1:exon:9192;Parent=Msa0322900-mRNA-1
chr2_4	exon	26475425	26475560	26475425	ID=Msa0322900-mRNA-1:exon:9191;Parent=Msa0322900-mRNA-1
chr2_4	exon	26475857	26476008	26475857	ID=Msa0322900-mRNA-1:exon:9190;Parent=Msa0322900-mRNA-1
chr2_4	exon	26476086	26476482	26476086	ID=Msa0322900-mRNA-1:exon:9189;Parent=Msa0322900-mRNA-1
chr2_4	five_prime_UTR	26476338	26476482	26476338	ID=Msa0322900-mRNA-1:five_prime_utr;Parent=Msa0322900-mRNA-1
chr2_4	CDS	26476086	26476337	26476086	ID=Msa0322900-mRNA-1:cds;Parent=Msa0322900-mRNA-1
chr2_4	CDS	26475857	26476008	26475857	ID=Msa0322900-mRNA-1:cds;Parent=Msa0322900-mRNA-1
chr2_4	CDS	26475425	26475560	26475425	ID=Msa0322900-mRNA-1:cds;Parent=Msa0322900-mRNA-1
chr2_4	CDS	26474368	26474523	26474368	ID=Msa0322900-mRNA-1:cds;Parent=Msa0322900-mRNA-1
chr2_4	CDS	26473994	26474073	26473994	ID=Msa0322900-mRNA-1:cds;Parent=Msa0322900-mRNA-1
chr2_4	CDS	26472561	26472654	26472561	ID=Msa0322900-mRNA-1:cds;Parent=Msa0322900-mRNA-1
chr2_4	three_prime_UTR	26472227	26472560	26472227	ID=Msa0322900-mRNA-1:three_prime_utr;Parent=Msa0322900-mRNA-1

Gene Sequence

>Msa0322900

ATGGCGACACCAGATCACCTCTTCAACCTCCGCAACAACTTCTACCTCGGTGCATACCAAGCTGCAATCAACAGCAGCGAAGTCTCCAACCTCTCTCCCGACGACATAATCGAACGCGACACTCTCGTTTATCGTTGCTACATCGCTCTTGGTCAGTTACAGTTCGTCATCTCCGAAATCAACGATTCTGCTCCTACGTCTCTTCAAGCCGTTAAATTGCTCGCTCTCTATTTCTCATCACCCGATTCAAAGGAATCTGCGATCGCGAGTATTAAAGAATGGCTTGCAGATCCTGCAATTGGGAACAATGCTACGTTGAGGCTTGTTGCTGGGATTATCTTTTTGCATGAACAGGATTTCAATGAGGCGTTGAAGTATACTAATGCTGGTGGAACCATGGAACTGACTGCGTTGAATGTGCAAATCTTTATTAAGATGCATAGGTCTGATTATGCTGAGAGACAGCTTAGGATTATGCAGCAGATTGATGAAGATCATACTCTTACTCAGCTTGCAAATGCTTGGCTTGATTTGGCTGTGGGAGGGGCGAAGATCCAAGAGGCGCATTTGATCTTCCAAGATTTGTCTGAGAGATATCAGTCTACTAGTTTGCTCTTGAATGGCAAGGCTGTTTGCTGCATGCAAATGGGTAACTTTGATGAAGCTGAGACTCTTTTGGTGGAAGCACTCAACAAGGATGCTAGGGATCCAGAAACACTGGCAAATCTTGTTGTATGCTGTCTTCATCTTGGCAAACCATCTTCTAAATCATTCAGCCAGCTGAAACTTTCACACCCAGATCATGTACTGGTCAAGAGGGTATCAGCAGCTGAAGAAAGCTTTGATAGAGCGCTACAATCTGTTTCGTGA

Protein sequence

>Msa0322900

MATPDHLFNLRNNFYLGAYQAAINSSEVSNLSPDDIIERDTLVYRCYIALGQLQFVISEINDSAPTSLQAVKLLALYFSSPDSKESAIASIKEWLADPAIGNNATLRLVAGIIFLHEQDFNEALKYTNAGGTMELTALNVQIFIKMHRSDYAERQLRIMQQIDEDHTLTQLANAWLDLAVGGAKIQEAHLIFQDLSERYQSTSLLLNGKAVCCMQMGNFDEAETLLVEALNKDARDPETLANLVVCCLHLGKPSSKSFSQLKLSHPDHVLVKRVSAAEESFDRALQSVS*