AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0322900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0322900 MtrunA17_Chr2g0293551 98.616 289 4 0 1 289 1 289 0.0 591
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0322900 AT1G30630.1 74.740 289 73 0 1 289 4 292 2.14e-169 471
Msa0322900 AT2G34840.1 75.347 288 71 0 2 289 6 293 2.21e-169 471
Msa0322900 AT2G34840.2 75.701 214 52 0 76 289 1 214 1.31e-125 357

Find 74 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGATTTGCCAGTGTTTC+TGG 0.104502 2_4:+26474039 None:intergenic
CACATTTACCCAATTGATTA+TGG 0.125106 2_4:+26472449 None:intergenic
CTTTCATTGTGAAATGGATT+TGG 0.237949 2_4:+26476459 None:intergenic
CAAAATCACATGCTCATTAT+TGG 0.267327 2_4:+26472257 None:intergenic
TGCAAATGCTTGGCTTGATT+TGG 0.285359 2_4:-26475430 Msa0322900:CDS
TTTCATTGTGAAATGGATTT+GGG 0.285927 2_4:+26476460 None:intergenic
CAATTGGGTAAATGTGTTAC+AGG 0.287228 2_4:-26472442 Msa0322900:three_prime_UTR
TGATGAAGCTGAGACTCTTT+TGG 0.330291 2_4:-26474385 Msa0322900:CDS
CCTTATCATGGCTATTGTAT+TGG 0.338317 2_4:-26472476 Msa0322900:three_prime_UTR
AACCATCTTCTAAATCATTC+AGG 0.343553 2_4:-26473993 Msa0322900:intron
ACATTTACCCAATTGATTAT+GGG 0.350179 2_4:+26472450 None:intergenic
ATTGGTTTCCCATAATCAAT+TGG 0.366163 2_4:-26472458 Msa0322900:three_prime_UTR
GTAGCATTGTTCCCAATTGC+AGG 0.373136 2_4:+26475947 None:intergenic
GCTACGTTGAGGCTTGTTGC+TGG 0.380071 2_4:-26475929 Msa0322900:CDS
GGTGTCGCCATTGATGGATT+TGG 0.383717 2_4:+26476327 None:intergenic
TGGCTTGCAGATCCTGCAAT+TGG 0.388117 2_4:-26475959 Msa0322900:CDS
GATATCTCTCAGACAAATCT+TGG 0.389822 2_4:+26474466 None:intergenic
TACCTGAATGATTTAGAAGA+TGG 0.403328 2_4:+26473991 None:intergenic
AGGAGCAGAATCGTTGATTT+CGG 0.403329 2_4:+26476143 None:intergenic
GGAAGATCAAATGCGCCTCT+TGG 0.403390 2_4:+26474487 None:intergenic
GTTGTATGCTGTCTTCATCT+TGG 0.408937 2_4:-26474018 Msa0322900:CDS
CTCTTGACCAGTACATGATC+TGG 0.409709 2_4:+26472613 None:intergenic
GGCTGTTTGCTGCATGCAAA+TGG 0.409788 2_4:-26474415 Msa0322900:CDS
GATATTATTCATGATTTGAA+TGG 0.413253 2_4:-26472527 Msa0322900:three_prime_UTR
TGATCTGGTGTCGCCATTGA+TGG 0.429633 2_4:+26476321 None:intergenic
ATAGAGAGCGAGCAATTTAA+CGG 0.433280 2_4:+26476107 None:intergenic
TCTACTAGTTTGCTCTTGAA+TGG 0.434996 2_4:-26474441 Msa0322900:CDS
TTGGTTTCCCATAATCAATT+GGG 0.441261 2_4:-26472457 Msa0322900:three_prime_UTR
CGCTGCTGTTGATTGCAGCT+TGG 0.447662 2_4:+26476259 None:intergenic
TGTGGGCTTTCATTGTGAAA+TGG 0.454430 2_4:+26476453 None:intergenic
TTACTCAGCTTGCAAATGCT+TGG 0.460646 2_4:-26475440 Msa0322900:CDS
TGAAATTGTAACCTTTGAAT+CGG 0.463883 2_4:+26476074 None:intergenic
ATGATGAATTTGTGTAGTAC+TGG 0.464217 2_4:+26476365 None:intergenic
TATGTCGTCGGGAGAGAGGT+TGG 0.471135 2_4:+26476230 None:intergenic
GGCTTGCAGATCCTGCAATT+GGG 0.471416 2_4:-26475958 Msa0322900:CDS
TATCGTTGCTACATCGCTCT+TGG 0.471667 2_4:-26476186 Msa0322900:CDS
CCAATACAATAGCCATGATA+AGG 0.478627 2_4:+26472476 None:intergenic
CAATCTGTTTCGTGAGCTCA+TGG 0.482245 2_4:-26472553 Msa0322900:exon
TGTGATTTGTGCAGGATGCT+AGG 0.494756 2_4:-26474065 Msa0322900:intron
CTACGTTGAGGCTTGTTGCT+GGG 0.494907 2_4:-26475928 Msa0322900:CDS
CGGAGGTTGAAGAGGTGATC+TGG 0.496215 2_4:+26476306 None:intergenic
CTGGGTGTGAAAGTTTCAGC+TGG 0.516866 2_4:+26472632 None:intergenic
GTCGCGTTCGATTATGTCGT+CGG 0.519121 2_4:+26476218 None:intergenic
TGCTTGGCTTGATTTGGCTG+TGG 0.525363 2_4:-26475424 Msa0322900:intron
AGTTGTTGCGGAGGTTGAAG+AGG 0.528845 2_4:+26476298 None:intergenic
GAAATTGTAACCTTTGAATC+GGG 0.529238 2_4:+26476075 None:intergenic
TTTCTCATCACCCGATTCAA+AGG 0.531346 2_4:-26476085 Msa0322900:intron
TCTAGATCCAAATCCATCAA+TGG 0.539293 2_4:-26476334 Msa0322900:exon
TCGCGTTCGATTATGTCGTC+GGG 0.546258 2_4:+26476219 None:intergenic
CTCCGCAACAACTTCTACCT+CGG 0.548277 2_4:-26476288 Msa0322900:CDS
CGATTATGTCGTCGGGAGAG+AGG 0.551111 2_4:+26476226 None:intergenic
CGATCGCGAGTATTAAAGAA+TGG 0.554403 2_4:-26475979 Msa0322900:CDS
GTGATTTGTGCAGGATGCTA+GGG 0.562390 2_4:-26474064 Msa0322900:intron
TAGTTTGCTCTTGAATGGCA+AGG 0.567959 2_4:-26474436 Msa0322900:CDS
TCTTGACCAGTACATGATCT+GGG 0.583999 2_4:+26472614 None:intergenic
TGCTAGGGATCCAGAAACAC+TGG 0.586587 2_4:-26474049 Msa0322900:CDS
ATTATGCTGAGAGACAGCTT+AGG 0.588117 2_4:-26475494 Msa0322900:CDS
CAGATCATGTACTGGTCAAG+AGG 0.589094 2_4:-26472612 Msa0322900:CDS
AAATCTTTATTAAGATGCAT+AGG 0.590426 2_4:-26475521 Msa0322900:CDS
TTCACACCCAGATCATGTAC+TGG 0.591368 2_4:-26472620 Msa0322900:CDS
GCTGTTTGCTGCATGCAAAT+GGG 0.591850 2_4:-26474414 Msa0322900:CDS
CGAGGTAGAAGTTGTTGCGG+AGG 0.594425 2_4:+26476289 None:intergenic
TACTAATGCTGGTGGAACCA+TGG 0.596370 2_4:-26475861 Msa0322900:CDS
GCGTTGAAGTATACTAATGC+TGG 0.597020 2_4:-26475872 Msa0322900:CDS
CACCGAGGTAGAAGTTGTTG+CGG 0.603080 2_4:+26476286 None:intergenic
GCATGAACAGGATTTCAATG+AGG 0.619909 2_4:-26475894 Msa0322900:CDS
TTTGGTGGAAGCACTCAACA+AGG 0.627745 2_4:-26474367 Msa0322900:intron
TTGAAGTATACTAATGCTGG+TGG 0.633802 2_4:-26475869 Msa0322900:CDS
TTCATGATTTGAATGGTGTG+TGG 0.644264 2_4:-26472520 Msa0322900:three_prime_UTR
AGATCATGTACTGGTCAAGA+GGG 0.649201 2_4:-26472611 Msa0322900:CDS
TTGGGAACAATGCTACGTTG+AGG 0.655531 2_4:-26475940 Msa0322900:CDS
TTAACGGCTTGAAGAGACGT+AGG 0.656056 2_4:+26476123 None:intergenic
TTGCAGCTTGGTATGCACCG+AGG 0.725254 2_4:+26476271 None:intergenic
GGGAGGGGCGAAGATCCAAG+AGG 0.749423 2_4:-26474502 Msa0322900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTGATAATAATTTTAAAAAT+TGG - chr2_4:26473377-26473396 Msa0322900:intron 10.0%
!!! TTTTTTTAACTTTTAAATGT+AGG - chr2_4:26473561-26473580 Msa0322900:intron 10.0%
!!! TTTTTTAACTTTTAAATGTA+GGG - chr2_4:26473562-26473581 Msa0322900:intron 10.0%
!! AAAAAATTCAATATAGACAT+AGG - chr2_4:26473593-26473612 Msa0322900:intron 15.0%
!! AAAAATTCAATATAGACATA+GGG - chr2_4:26473594-26473613 Msa0322900:intron 15.0%
!! GATGTATTGAATTTATTAAA+GGG + chr2_4:26473926-26473945 None:intergenic 15.0%
!! TGATGTATTGAATTTATTAA+AGG + chr2_4:26473927-26473946 None:intergenic 15.0%
!! TTCATCAAGTAATAATAATA+AGG + chr2_4:26474013-26474032 None:intergenic 15.0%
!!! TTATCAAACATTAAAAGTTT+TGG + chr2_4:26474448-26474467 None:intergenic 15.0%
!!! AATTAAAAACTTTGGAATAT+AGG - chr2_4:26474988-26475007 Msa0322900:intron 15.0%
!!! ATTAAAAACTTTGGAATATA+GGG - chr2_4:26474989-26475008 Msa0322900:intron 15.0%
!!! TATATATGATAATAGAGTTT+TGG + chr2_4:26475454-26475473 None:intergenic 15.0%
!!! TTGCTTTTATACAATATAAT+AGG + chr2_4:26476386-26476405 None:intergenic 15.0%
!!! TTTATCGTTATTGTTATTGT+AGG - chr2_4:26472679-26472698 Msa0322900:intron 20.0%
!! TTAAAAATATCTCTGTGATT+TGG - chr2_4:26472964-26472983 Msa0322900:intron 20.0%
!!! AGTGTAAAACTGTTTTTTTA+CGG - chr2_4:26473014-26473033 Msa0322900:intron 20.0%
!! AAATCTTTATTAAGATGCAT+AGG - chr2_4:26473166-26473185 Msa0322900:intron 20.0%
!!! CATCAACATTTTCAATAATA+AGG + chr2_4:26473317-26473336 None:intergenic 20.0%
!!! TTATTGAAAATGTTGATGAA+AGG - chr2_4:26473319-26473338 Msa0322900:intron 20.0%
!!! TATTGAAAATGTTGATGAAA+GGG - chr2_4:26473320-26473339 Msa0322900:intron 20.0%
!! TGCTATGTAGATTATTATTA+GGG - chr2_4:26473476-26473495 Msa0322900:intron 20.0%
!!! TGCAAGTAAATAAGTTTTTA+TGG - chr2_4:26473661-26473680 Msa0322900:intron 20.0%
!! GCTTATGAATAATACATAAA+AGG - chr2_4:26473752-26473771 Msa0322900:intron 20.0%
!!! TTAAACTTTTTAGATGATCA+TGG + chr2_4:26473836-26473855 None:intergenic 20.0%
!!! CAATGCAAAATTTCTATTTT+TGG - chr2_4:26473877-26473896 Msa0322900:intron 20.0%
!! AATATCAAACAACTGAAAAT+TGG + chr2_4:26474478-26474497 None:intergenic 20.0%
!! AATCACAAGATAAAAAAAGA+GGG + chr2_4:26474751-26474770 None:intergenic 20.0%
!! AAATCACAAGATAAAAAAAG+AGG + chr2_4:26474752-26474771 None:intergenic 20.0%
!!! TCTATAATTTTAATACCTGT+GGG - chr2_4:26474883-26474902 Msa0322900:intron 20.0%
!!! TGCATATCATTAAAATCTTT+TGG - chr2_4:26475028-26475047 Msa0322900:intron 20.0%
!!! GCATATCATTAAAATCTTTT+GGG - chr2_4:26475029-26475048 Msa0322900:intron 20.0%
!! ATTAAACCTAAAATGTTTCA+TGG - chr2_4:26475120-26475139 Msa0322900:intron 20.0%
!! AACATCATTTGTAAGAATAA+CGG - chr2_4:26475327-26475346 Msa0322900:intron 20.0%
!! ATATCTGATTATGTATTTCT+TGG - chr2_4:26475812-26475831 Msa0322900:intron 20.0%
!! GATATTATTCATGATTTGAA+TGG - chr2_4:26476160-26476179 Msa0322900:CDS 20.0%
!!! TGTTTCCATTATATTTTTAC+TGG - chr2_4:26476346-26476365 Msa0322900:five_prime_UTR 20.0%
!!! CTTTTCCAGTAAAAATATAA+TGG + chr2_4:26476354-26476373 None:intergenic 20.0%
!! TTTCATTGTGAAATGGATTT+GGG + chr2_4:26472230-26472249 None:intergenic 25.0%
!!! TTTTGAAGAGAAAGAGAAAT+GGG + chr2_4:26472302-26472321 None:intergenic 25.0%
! TGAAATTGTAACCTTTGAAT+CGG + chr2_4:26472616-26472635 None:intergenic 25.0%
!!! TTTTTTTTCTTACAGTTCCA+TGG + chr2_4:26472846-26472865 None:intergenic 25.0%
!!! ATGTTGGTTTTGTGTTTTTT+AGG - chr2_4:26473127-26473146 Msa0322900:intron 25.0%
! AAAAATTGGAAGTGATTGAA+TGG - chr2_4:26473391-26473410 Msa0322900:intron 25.0%
! GTGCTATGTAGATTATTATT+AGG - chr2_4:26473475-26473494 Msa0322900:intron 25.0%
!!! CATTAGAAAACTTGTTATCA+GGG + chr2_4:26473502-26473521 None:intergenic 25.0%
!!! TCATTAGAAAACTTGTTATC+AGG + chr2_4:26473503-26473522 None:intergenic 25.0%
!! AAGTTTTTATGGCAATTCAT+AGG - chr2_4:26473672-26473691 Msa0322900:intron 25.0%
!! AGGTTTGAAAATAGATGTTT+TGG - chr2_4:26474118-26474137 Msa0322900:intron 25.0%
!!! TTGAAAATAGATGTTTTGGT+TGG - chr2_4:26474122-26474141 Msa0322900:intron 25.0%
! AATGAAGATTGAAATTCTGT+TGG - chr2_4:26474504-26474523 Msa0322900:CDS 25.0%
!! GCTCTTTAGTTTAAATCTTT+AGG - chr2_4:26474526-26474545 Msa0322900:intron 25.0%
!!! ATTATTGGTTTTGTTGGAAA+TGG - chr2_4:26474577-26474596 Msa0322900:intron 25.0%
! ATCACAAGATAAAAAAAGAG+GGG + chr2_4:26474750-26474769 None:intergenic 25.0%
!!! CTCTATAATTTTAATACCTG+TGG - chr2_4:26474882-26474901 Msa0322900:intron 25.0%
! GCTCTTTCAATTAAAAACTT+TGG - chr2_4:26474980-26474999 Msa0322900:intron 25.0%
!!! AAAATCTTTTGGGTTTAGAA+TGG - chr2_4:26475039-26475058 Msa0322900:intron 25.0%
!! TCATTTTACAGTTTCACTAT+TGG + chr2_4:26475426-26475445 None:intergenic 25.0%
!!! CAAGTATTTTTGATTGCTAA+GGG + chr2_4:26475626-26475645 None:intergenic 25.0%
!!! TCAAGTATTTTTGATTGCTA+AGG + chr2_4:26475627-26475646 None:intergenic 25.0%
! ATTTACAGCGTAAATTAAAG+AGG + chr2_4:26475685-26475704 None:intergenic 25.0%
! ATTTACAAGTTACTCACTAA+TGG + chr2_4:26476019-26476038 None:intergenic 25.0%
! ACATTTACCCAATTGATTAT+GGG + chr2_4:26476240-26476259 None:intergenic 25.0%
! CTTTCATTGTGAAATGGATT+TGG + chr2_4:26472231-26472250 None:intergenic 30.0%
!!! AGTGTTTTGATTTGTGATAG+TGG + chr2_4:26472272-26472291 None:intergenic 30.0%
!!! GTTTTGAAGAGAAAGAGAAA+TGG + chr2_4:26472303-26472322 None:intergenic 30.0%
ATGATGAATTTGTGTAGTAC+TGG + chr2_4:26472325-26472344 None:intergenic 30.0%
GAAATTGTAACCTTTGAATC+GGG + chr2_4:26472615-26472634 None:intergenic 30.0%
! GATTATCTTTTTGCATGAAC+AGG - chr2_4:26472781-26472800 Msa0322900:intron 30.0%
! TCAGATTGATGGTTTCTTAT+TGG + chr2_4:26472915-26472934 None:intergenic 30.0%
GATATGACATATCAGATTGA+TGG + chr2_4:26472926-26472945 None:intergenic 30.0%
! AAAATATCTCTGTGATTTGG+TGG - chr2_4:26472967-26472986 Msa0322900:intron 30.0%
!!! AAACTGTTTTTTTACGGTGT+CGG - chr2_4:26473020-26473039 Msa0322900:intron 30.0%
!! TTGATAATGATGATGAGAAG+AGG - chr2_4:26473080-26473099 Msa0322900:intron 30.0%
!! CATGCTTTTAATTCAAGTGT+CGG - chr2_4:26473453-26473472 Msa0322900:intron 30.0%
! ATATAGACATAGGGTTTGTT+TGG - chr2_4:26473603-26473622 Msa0322900:intron 30.0%
! TTTTCATAAACTACCTTGAC+AGG - chr2_4:26473730-26473749 Msa0322900:intron 30.0%
TATTATTCATAAGCCTGTCA+AGG + chr2_4:26473746-26473765 None:intergenic 30.0%
! TGGAATGTGATGTGTTTTAT+TGG - chr2_4:26474152-26474171 Msa0322900:intron 30.0%
!!! TGTTTTATTGGTGTTGGATT+AGG - chr2_4:26474164-26474183 Msa0322900:intron 30.0%
!!! GTTTTATTGGTGTTGGATTA+GGG - chr2_4:26474165-26474184 Msa0322900:intron 30.0%
ACTCATCTAAATGAGATAAC+AGG + chr2_4:26474413-26474432 None:intergenic 30.0%
CAAACAACTGAAAATTGGAA+AGG + chr2_4:26474473-26474492 None:intergenic 30.0%
TTGCTAAAGTAGAGTTTGAT+AGG - chr2_4:26474551-26474570 Msa0322900:intron 30.0%
TGCTAAAGTAGAGTTTGATA+GGG - chr2_4:26474552-26474571 Msa0322900:intron 30.0%
GAGTTTGATAGGGTAATTAT+TGG - chr2_4:26474562-26474581 Msa0322900:intron 30.0%
!!! AGGGTAATTATTGGTTTTGT+TGG - chr2_4:26474571-26474590 Msa0322900:intron 30.0%
AACCATCTTCTAAATCATTC+AGG - chr2_4:26474694-26474713 Msa0322900:intron 30.0%
TACCTGAATGATTTAGAAGA+TGG + chr2_4:26474699-26474718 None:intergenic 30.0%
TCACAAGATAAAAAAAGAGG+GGG + chr2_4:26474749-26474768 None:intergenic 30.0%
ATAGATGTAGTTTCCTGTAT+TGG - chr2_4:26474808-26474827 Msa0322900:intron 30.0%
AAGTAACAAAAAGATTCCAC+CGG + chr2_4:26474834-26474853 None:intergenic 30.0%
! ACTGCTATTGTTTTCCATTT+GGG + chr2_4:26474935-26474954 None:intergenic 30.0%
! AACTGCTATTGTTTTCCATT+TGG + chr2_4:26474936-26474955 None:intergenic 30.0%
! AGTGATCCATGAAACATTTT+AGG + chr2_4:26475129-26475148 None:intergenic 30.0%
ACTAGGAAATATTAGAAGCA+GGG + chr2_4:26475366-26475385 None:intergenic 30.0%
TACTAGGAAATATTAGAAGC+AGG + chr2_4:26475367-26475386 None:intergenic 30.0%
TTCTGTAGATACTTACTACT+AGG + chr2_4:26475383-26475402 None:intergenic 30.0%
TCACTATTGGAATTGTACAA+TGG + chr2_4:26475413-26475432 None:intergenic 30.0%
AGATATATGTTTAGCCACTT+TGG - chr2_4:26475531-26475550 Msa0322900:CDS 30.0%
ATCATTAAACAGAACCAAAG+TGG + chr2_4:26475548-26475567 None:intergenic 30.0%
CTAATCACATATCTTCTATG+TGG - chr2_4:26475754-26475773 Msa0322900:intron 30.0%
AAGATTCAACCAATAAGACA+CGG + chr2_4:26475790-26475809 None:intergenic 30.0%
ACTAGCATTATATACAAACC+AGG - chr2_4:26475956-26475975 Msa0322900:CDS 30.0%
ATAAGGTGTAAAAATTGCAC+GGG + chr2_4:26476197-26476216 None:intergenic 30.0%
GATAAGGTGTAAAAATTGCA+CGG + chr2_4:26476198-26476217 None:intergenic 30.0%
! GCAATTTTTACACCTTATCA+TGG - chr2_4:26476199-26476218 Msa0322900:CDS 30.0%
! ATTGGTTTCCCATAATCAAT+TGG - chr2_4:26476229-26476248 Msa0322900:CDS 30.0%
TTGGTTTCCCATAATCAATT+GGG - chr2_4:26476230-26476249 Msa0322900:CDS 30.0%
CACATTTACCCAATTGATTA+TGG + chr2_4:26476241-26476260 None:intergenic 30.0%
CAAAATCACATGCTCATTAT+TGG + chr2_4:26476433-26476452 None:intergenic 30.0%
!! AGTGGTGGTGAAATTTTTGT+GGG + chr2_4:26472254-26472273 None:intergenic 35.0%
!! TAGTGGTGGTGAAATTTTTG+TGG + chr2_4:26472255-26472274 None:intergenic 35.0%
!!! GTTTTGATTTGTGATAGTGG+TGG + chr2_4:26472269-26472288 None:intergenic 35.0%
TCTAGATCCAAATCCATCAA+TGG - chr2_4:26472353-26472372 Msa0322900:three_prime_UTR 35.0%
ATAGAGAGCGAGCAATTTAA+CGG + chr2_4:26472583-26472602 None:intergenic 35.0%
TTGAAGTATACTAATGCTGG+TGG - chr2_4:26472818-26472837 Msa0322900:intron 35.0%
! TAGATGATCATGGTTCTGTT+TGG + chr2_4:26473826-26473845 None:intergenic 35.0%
TTATTCCTTGACATGTACCT+AGG - chr2_4:26473971-26473990 Msa0322900:intron 35.0%
!!! ATGTTTTGGTTGGTTGAGTT+TGG - chr2_4:26474132-26474151 Msa0322900:intron 35.0%
!! GTGATGTGTTTTATTGGTGT+TGG - chr2_4:26474158-26474177 Msa0322900:intron 35.0%
GATATCTCTCAGACAAATCT+TGG + chr2_4:26474224-26474243 None:intergenic 35.0%
!! TCTACTAGTTTGCTCTTGAA+TGG - chr2_4:26474246-26474265 Msa0322900:intron 35.0%
CTCATTTAGATGAGTGTTTG+TGG - chr2_4:26474418-26474437 Msa0322900:CDS 35.0%
TAAATCATTCAGGTAAGCTC+TGG - chr2_4:26474704-26474723 Msa0322900:intron 35.0%
CATATACAAATATGACCCAC+AGG + chr2_4:26474901-26474920 None:intergenic 35.0%
CTGTGGGTCATATTTGTATA+TGG - chr2_4:26474899-26474918 Msa0322900:intron 35.0%
! CTGCTATTGTTTTCCATTTG+GGG + chr2_4:26474934-26474953 None:intergenic 35.0%
!!! TAGTTTTGTGACCTACTTGA+AGG + chr2_4:26475101-26475120 None:intergenic 35.0%
GTTTCATGGATCACTTATGT+TGG - chr2_4:26475134-26475153 Msa0322900:intron 35.0%
TTGGAAACCAAATTGCATTG+CGG - chr2_4:26475153-26475172 Msa0322900:intron 35.0%
CACACAAATGAATCATGTCT+GGG + chr2_4:26475198-26475217 None:intergenic 35.0%
ACACACAAATGAATCATGTC+TGG + chr2_4:26475199-26475218 None:intergenic 35.0%
AGAATAACGGTACATAACTC+AGG - chr2_4:26475340-26475359 Msa0322900:intron 35.0%
! GTGTCTTATTGGTTGAATCT+TGG - chr2_4:26475789-26475808 Msa0322900:intron 35.0%
GTTCACACACAAATAACATG+TGG + chr2_4:26475860-26475879 None:intergenic 35.0%
TTCATGATTTGAATGGTGTG+TGG - chr2_4:26476167-26476186 Msa0322900:CDS 35.0%
CCAATACAATAGCCATGATA+AGG + chr2_4:26476214-26476233 None:intergenic 35.0%
CCTTATCATGGCTATTGTAT+TGG - chr2_4:26476211-26476230 Msa0322900:CDS 35.0%
CAATTGGGTAAATGTGTTAC+AGG - chr2_4:26476245-26476264 Msa0322900:CDS 35.0%
TGTGGGCTTTCATTGTGAAA+TGG + chr2_4:26472237-26472256 None:intergenic 40.0%
!! AGGAGCAGAATCGTTGATTT+CGG + chr2_4:26472547-26472566 None:intergenic 40.0%
TTTCTCATCACCCGATTCAA+AGG - chr2_4:26472602-26472621 Msa0322900:CDS 40.0%
CGATCGCGAGTATTAAAGAA+TGG - chr2_4:26472708-26472727 Msa0322900:intron 40.0%
GCATGAACAGGATTTCAATG+AGG - chr2_4:26472793-26472812 Msa0322900:intron 40.0%
GCGTTGAAGTATACTAATGC+TGG - chr2_4:26472815-26472834 Msa0322900:intron 40.0%
GTGGAATACTCGATGATCAT+TGG - chr2_4:26472986-26473005 Msa0322900:intron 40.0%
ATGATGAGAAGAGGATGTGA+GGG - chr2_4:26473089-26473108 Msa0322900:intron 40.0%
GTTTGGAAGTGATTGGATGT+TGG - chr2_4:26473111-26473130 Msa0322900:intron 40.0%
ATTATGCTGAGAGACAGCTT+AGG - chr2_4:26473193-26473212 Msa0322900:intron 40.0%
TTACTCAGCTTGCAAATGCT+TGG - chr2_4:26473247-26473266 Msa0322900:intron 40.0%
! TGCAAATGCTTGGCTTGATT+TGG - chr2_4:26473257-26473276 Msa0322900:intron 40.0%
GATTGAATGGATCAGCATGT+TGG - chr2_4:26473404-26473423 Msa0322900:intron 40.0%
! GACATAGGGTTTGTTTGGAT+TGG - chr2_4:26473608-26473627 Msa0322900:intron 40.0%
! GATCATGGTTCTGTTTGGAT+TGG + chr2_4:26473821-26473840 None:intergenic 40.0%
GGTCTAGCTAACGTATGTTA+AGG + chr2_4:26473905-26473924 None:intergenic 40.0%
!! TTATTGGTGTTGGATTAGGG+AGG - chr2_4:26474168-26474187 Msa0322900:intron 40.0%
!! TATTGGTGTTGGATTAGGGA+GGG - chr2_4:26474169-26474188 Msa0322900:intron 40.0%
!! TAGTTTGCTCTTGAATGGCA+AGG - chr2_4:26474251-26474270 Msa0322900:intron 40.0%
! TGATGAAGCTGAGACTCTTT+TGG - chr2_4:26474302-26474321 Msa0322900:intron 40.0%
! AAACTCGTTGTGATTTGTGC+AGG - chr2_4:26474614-26474633 Msa0322900:intron 40.0%
ACAAGATTTGCCAGTGTTTC+TGG + chr2_4:26474651-26474670 None:intergenic 40.0%
GTTGTATGCTGTCTTCATCT+TGG - chr2_4:26474669-26474688 Msa0322900:intron 40.0%
! ATGTAGTTTCCTGTATTGGC+CGG - chr2_4:26474812-26474831 Msa0322900:intron 40.0%
ATGGAATTTGTCTCCCCAAA+TGG - chr2_4:26474918-26474937 Msa0322900:intron 40.0%
AAATATGAACCAGACTGTGC+TGG - chr2_4:26475581-26475600 Msa0322900:intron 40.0%
ACCAATAAGACACGGAAGAA+AGG + chr2_4:26475782-26475801 None:intergenic 40.0%
GCATAAACTAAGCATAGTCC+TGG + chr2_4:26475977-26475996 None:intergenic 40.0%
TCTTGACCAGTACATGATCT+GGG + chr2_4:26476076-26476095 None:intergenic 40.0%
! AGATCATGTACTGGTCAAGA+GGG - chr2_4:26476076-26476095 Msa0322900:intron 40.0%
TATCGTTGCTACATCGCTCT+TGG - chr2_4:26472501-26472520 Msa0322900:three_prime_UTR 45.0%
TTAACGGCTTGAAGAGACGT+AGG + chr2_4:26472567-26472586 None:intergenic 45.0%
GTAGCATTGTTCCCAATTGC+AGG + chr2_4:26472743-26472762 None:intergenic 45.0%
TTGGGAACAATGCTACGTTG+AGG - chr2_4:26472747-26472766 Msa0322900:intron 45.0%
TACTAATGCTGGTGGAACCA+TGG - chr2_4:26472826-26472845 Msa0322900:intron 45.0%
!!! CTGTTTTTTTACGGTGTCGG+TGG - chr2_4:26473023-26473042 Msa0322900:intron 45.0%
GATGATGAGAAGAGGATGTG+AGG - chr2_4:26473088-26473107 Msa0322900:intron 45.0%
TGTGAGGGTTTGGAAGTGAT+TGG - chr2_4:26473104-26473123 Msa0322900:intron 45.0%
CACTAATATGTGTCGCGACT+CGG - chr2_4:26473428-26473447 Msa0322900:intron 45.0%
AAGTGCCTAGGTACATGTCA+AGG + chr2_4:26473979-26473998 None:intergenic 45.0%
GCAAATGCTAACAAGTGCCT+AGG + chr2_4:26473991-26474010 None:intergenic 45.0%
!! ATTGGTGTTGGATTAGGGAG+GGG - chr2_4:26474170-26474189 Msa0322900:intron 45.0%
! GCTGTTTGCTGCATGCAAAT+GGG - chr2_4:26474273-26474292 Msa0322900:intron 45.0%
! TGAAGCTGAGACTCTTTTGG+TGG - chr2_4:26474305-26474324 Msa0322900:intron 45.0%
!! TTTGGTGGAAGCACTCAACA+AGG - chr2_4:26474320-26474339 Msa0322900:intron 45.0%
! TGTGATTTGTGCAGGATGCT+AGG - chr2_4:26474622-26474641 Msa0322900:intron 45.0%
! GTGATTTGTGCAGGATGCTA+GGG - chr2_4:26474623-26474642 Msa0322900:intron 45.0%
! AAGGACCCAACTCTAGAAGA+GGG + chr2_4:26475082-26475101 None:intergenic 45.0%
TAGAGTTGGGTCCTTCAAGT+AGG - chr2_4:26475087-26475106 Msa0322900:intron 45.0%
CTCAGAACCGCAATGCAATT+TGG + chr2_4:26475163-26475182 None:intergenic 45.0%
GCCTTTCTTCCGTGTCTTAT+TGG - chr2_4:26475778-26475797 Msa0322900:intron 45.0%
TTCACACCCAGATCATGTAC+TGG - chr2_4:26476067-26476086 Msa0322900:intron 45.0%
CTCTTGACCAGTACATGATC+TGG + chr2_4:26476077-26476096 None:intergenic 45.0%
! CAGATCATGTACTGGTCAAG+AGG - chr2_4:26476075-26476094 Msa0322900:intron 45.0%
CAATCTGTTTCGTGAGCTCA+TGG - chr2_4:26476134-26476153 Msa0322900:CDS 45.0%
!!! TTTTATATAAAAAGAAAAAA+AGG - chr2_4:26474048-26474067 Msa0322900:CDS 5.0%
!! GGTGTCGCCATTGATGGATT+TGG + chr2_4:26472363-26472382 None:intergenic 50.0%
!! TGATCTGGTGTCGCCATTGA+TGG + chr2_4:26472369-26472388 None:intergenic 50.0%
AGTTGTTGCGGAGGTTGAAG+AGG + chr2_4:26472392-26472411 None:intergenic 50.0%
CTCCGCAACAACTTCTACCT+CGG - chr2_4:26472399-26472418 Msa0322900:three_prime_UTR 50.0%
CACCGAGGTAGAAGTTGTTG+CGG + chr2_4:26472404-26472423 None:intergenic 50.0%
TCGCGTTCGATTATGTCGTC+GGG + chr2_4:26472471-26472490 None:intergenic 50.0%
GTCGCGTTCGATTATGTCGT+CGG + chr2_4:26472472-26472491 None:intergenic 50.0%
! TGGCTTGCAGATCCTGCAAT+TGG - chr2_4:26472728-26472747 Msa0322900:intron 50.0%
GGCTTGCAGATCCTGCAATT+GGG - chr2_4:26472729-26472748 Msa0322900:intron 50.0%
!! CTACGTTGAGGCTTGTTGCT+GGG - chr2_4:26472759-26472778 Msa0322900:intron 50.0%
GAGAAGAGGATGTGAGGGTT+TGG - chr2_4:26473094-26473113 Msa0322900:intron 50.0%
!! TGCTTGGCTTGATTTGGCTG+TGG - chr2_4:26473263-26473282 Msa0322900:intron 50.0%
GGAAGATCAAATGCGCCTCT+TGG + chr2_4:26474203-26474222 None:intergenic 50.0%
! GGCTGTTTGCTGCATGCAAA+TGG - chr2_4:26474272-26474291 Msa0322900:intron 50.0%
TGCTAGGGATCCAGAAACAC+TGG - chr2_4:26474638-26474657 Msa0322900:intron 50.0%
! TAGTTTCCTGTATTGGCCGG+TGG - chr2_4:26474815-26474834 Msa0322900:intron 50.0%
AAGATTCCACCGGCCAATAC+AGG + chr2_4:26474824-26474843 None:intergenic 50.0%
!! TCCACACCCTCTTCTAGAGT+TGG - chr2_4:26475073-26475092 Msa0322900:intron 50.0%
!! CCACACCCTCTTCTAGAGTT+GGG - chr2_4:26475074-26475093 Msa0322900:intron 50.0%
! GAAGGACCCAACTCTAGAAG+AGG + chr2_4:26475083-26475102 None:intergenic 50.0%
TGAACCAGACTGTGCTGGAA+AGG - chr2_4:26475586-26475605 Msa0322900:intron 50.0%
TGTTCCTTTCCAGCACAGTC+TGG + chr2_4:26475593-26475612 None:intergenic 50.0%
CTGGGTGTGAAAGTTTCAGC+TGG + chr2_4:26476058-26476077 None:intergenic 50.0%
CGGAGGTTGAAGAGGTGATC+TGG + chr2_4:26472384-26472403 None:intergenic 55.0%
CGAGGTAGAAGTTGTTGCGG+AGG + chr2_4:26472401-26472420 None:intergenic 55.0%
TTGCAGCTTGGTATGCACCG+AGG + chr2_4:26472419-26472438 None:intergenic 55.0%
! CGCTGCTGTTGATTGCAGCT+TGG + chr2_4:26472431-26472450 None:intergenic 55.0%
TATGTCGTCGGGAGAGAGGT+TGG + chr2_4:26472460-26472479 None:intergenic 55.0%
CGATTATGTCGTCGGGAGAG+AGG + chr2_4:26472464-26472483 None:intergenic 55.0%
!! GCTACGTTGAGGCTTGTTGC+TGG - chr2_4:26472758-26472777 Msa0322900:intron 55.0%
! CCCAACTCTAGAAGAGGGTG+TGG + chr2_4:26475077-26475096 None:intergenic 55.0%
GGGAGGGGCGAAGATCCAAG+AGG - chr2_4:26474185-26474204 Msa0322900:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 26472227 26476482 26472227 ID=Msa0322900;Name=Msa0322900
chr2_4 mRNA 26472227 26476482 26472227 ID=Msa0322900-mRNA-1;Parent=Msa0322900;Name=Msa0322900-mRNA-1;_AED=0.02;_eAED=0.02;_QI=145|1|1|1|1|1|6|334|289
chr2_4 exon 26472227 26472654 26472227 ID=Msa0322900-mRNA-1:exon:9194;Parent=Msa0322900-mRNA-1
chr2_4 exon 26473994 26474073 26473994 ID=Msa0322900-mRNA-1:exon:9193;Parent=Msa0322900-mRNA-1
chr2_4 exon 26474368 26474523 26474368 ID=Msa0322900-mRNA-1:exon:9192;Parent=Msa0322900-mRNA-1
chr2_4 exon 26475425 26475560 26475425 ID=Msa0322900-mRNA-1:exon:9191;Parent=Msa0322900-mRNA-1
chr2_4 exon 26475857 26476008 26475857 ID=Msa0322900-mRNA-1:exon:9190;Parent=Msa0322900-mRNA-1
chr2_4 exon 26476086 26476482 26476086 ID=Msa0322900-mRNA-1:exon:9189;Parent=Msa0322900-mRNA-1
chr2_4 five_prime_UTR 26476338 26476482 26476338 ID=Msa0322900-mRNA-1:five_prime_utr;Parent=Msa0322900-mRNA-1
chr2_4 CDS 26476086 26476337 26476086 ID=Msa0322900-mRNA-1:cds;Parent=Msa0322900-mRNA-1
chr2_4 CDS 26475857 26476008 26475857 ID=Msa0322900-mRNA-1:cds;Parent=Msa0322900-mRNA-1
chr2_4 CDS 26475425 26475560 26475425 ID=Msa0322900-mRNA-1:cds;Parent=Msa0322900-mRNA-1
chr2_4 CDS 26474368 26474523 26474368 ID=Msa0322900-mRNA-1:cds;Parent=Msa0322900-mRNA-1
chr2_4 CDS 26473994 26474073 26473994 ID=Msa0322900-mRNA-1:cds;Parent=Msa0322900-mRNA-1
chr2_4 CDS 26472561 26472654 26472561 ID=Msa0322900-mRNA-1:cds;Parent=Msa0322900-mRNA-1
chr2_4 three_prime_UTR 26472227 26472560 26472227 ID=Msa0322900-mRNA-1:three_prime_utr;Parent=Msa0322900-mRNA-1
Gene Sequence

>Msa0322900

ATGGCGACACCAGATCACCTCTTCAACCTCCGCAACAACTTCTACCTCGGTGCATACCAAGCTGCAATCAACAGCAGCGAAGTCTCCAACCTCTCTCCCGACGACATAATCGAACGCGACACTCTCGTTTATCGTTGCTACATCGCTCTTGGTCAGTTACAGTTCGTCATCTCCGAAATCAACGATTCTGCTCCTACGTCTCTTCAAGCCGTTAAATTGCTCGCTCTCTATTTCTCATCACCCGATTCAAAGGAATCTGCGATCGCGAGTATTAAAGAATGGCTTGCAGATCCTGCAATTGGGAACAATGCTACGTTGAGGCTTGTTGCTGGGATTATCTTTTTGCATGAACAGGATTTCAATGAGGCGTTGAAGTATACTAATGCTGGTGGAACCATGGAACTGACTGCGTTGAATGTGCAAATCTTTATTAAGATGCATAGGTCTGATTATGCTGAGAGACAGCTTAGGATTATGCAGCAGATTGATGAAGATCATACTCTTACTCAGCTTGCAAATGCTTGGCTTGATTTGGCTGTGGGAGGGGCGAAGATCCAAGAGGCGCATTTGATCTTCCAAGATTTGTCTGAGAGATATCAGTCTACTAGTTTGCTCTTGAATGGCAAGGCTGTTTGCTGCATGCAAATGGGTAACTTTGATGAAGCTGAGACTCTTTTGGTGGAAGCACTCAACAAGGATGCTAGGGATCCAGAAACACTGGCAAATCTTGTTGTATGCTGTCTTCATCTTGGCAAACCATCTTCTAAATCATTCAGCCAGCTGAAACTTTCACACCCAGATCATGTACTGGTCAAGAGGGTATCAGCAGCTGAAGAAAGCTTTGATAGAGCGCTACAATCTGTTTCGTGA

Protein sequence

>Msa0322900

MATPDHLFNLRNNFYLGAYQAAINSSEVSNLSPDDIIERDTLVYRCYIALGQLQFVISEINDSAPTSLQAVKLLALYFSSPDSKESAIASIKEWLADPAIGNNATLRLVAGIIFLHEQDFNEALKYTNAGGTMELTALNVQIFIKMHRSDYAERQLRIMQQIDEDHTLTQLANAWLDLAVGGAKIQEAHLIFQDLSERYQSTSLLLNGKAVCCMQMGNFDEAETLLVEALNKDARDPETLANLVVCCLHLGKPSSKSFSQLKLSHPDHVLVKRVSAAEESFDRALQSVS*