AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1127540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1127540 MtrunA17_Chr7g0270811 71.324 136 7 2 1 104 1 136 9.71e-36 127
Msa1127540 MtrunA17_Chr3g0096431 45.745 94 22 1 37 101 5 98 1.57e-19 78.2
Msa1127540 MtrunA17_Chr3g0143341 41.111 90 24 1 41 101 3 92 8.56e-14 65.5
Msa1127540 MtrunA17_Chr3g0143331 64.286 42 15 0 62 103 35 76 2.48e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1127540 AT3G62120.2 58.654 104 15 1 29 104 34 137 9.49e-30 110
Msa1127540 AT3G62120.1 58.654 104 15 1 29 104 34 137 9.49e-30 110
Msa1127540 AT3G62120.3 60.396 101 12 1 29 101 21 121 9.82e-30 110

Find 38 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCGGTAACATTCTGTTTC+AGG 0.161245 7_3:-79175832 Msa1127540:five_prime_UTR
GTTTGTTTCTAATACTGTTC+TGG 0.275959 7_3:-79174709 Msa1127540:CDS
TAACCTGATTGTTGTGGTTT+TGG 0.279807 7_3:+79175716 None:intergenic
AAGGAAGTTAAGAAAGAAAC+TGG 0.304904 7_3:-79175603 Msa1127540:CDS
GTTAAGAAAGAAACTGGTTT+AGG 0.347730 7_3:-79175597 Msa1127540:CDS
TTCTAATACTGTTCTGGAAA+AGG 0.393006 7_3:-79174703 Msa1127540:CDS
GAAGAAGAAATGTTTATGAA+TGG 0.406568 7_3:+79175865 None:intergenic
GGAAAGAAGGCGAGAGAGAA+TGG 0.410760 7_3:+79175917 None:intergenic
TAACATTCTGTTTCAGGATC+AGG 0.419272 7_3:-79175826 Msa1127540:five_prime_UTR
TGTAGGTGGTGGAAAGAAGA+AGG 0.433758 7_3:-79175622 Msa1127540:intron
TCGTCATCCTTCACAATGGC+GGG 0.453103 7_3:-79175800 Msa1127540:exon
CTGGAGCAAAACCCTCGATA+TGG 0.461189 7_3:+79174673 None:intergenic
ACCTTGTTGAGTTGGAAAGA+AGG 0.462316 7_3:+79175904 None:intergenic
TTTAGGTTTGACCAATAAGA+AGG 0.475575 7_3:-79175580 Msa1127540:CDS
CAACCAAAACCACAACAATC+AGG 0.476529 7_3:-79175719 Msa1127540:intron
AGGCTGAAAACTTCGGAGAA+TGG 0.496139 7_3:-79175560 Msa1127540:CDS
CTCGTCATCCTTCACAATGG+CGG 0.504304 7_3:-79175801 Msa1127540:exon
ACGGTGTTACCTTGTTGAGT+TGG 0.512610 7_3:+79175896 None:intergenic
CTTCTTCTTCAATTCCTCAT+CGG 0.520274 7_3:-79175849 Msa1127540:five_prime_UTR
ATCGGTCCCCGCCATTGTGA+AGG 0.522242 7_3:+79175793 None:intergenic
ATTTAAATGACTCTCACCTC+TGG 0.528364 7_3:+79174654 None:intergenic
AGAGAGAGAATCTCCTCTTA+CGG 0.530261 7_3:-79175964 Msa1127540:five_prime_UTR
GCGTGCAAGAGCGATGGTGC+CGG 0.533896 7_3:+79175941 None:intergenic
TACTGTTCTGGAAAAGGAGA+AGG 0.537973 7_3:-79174697 Msa1127540:CDS
TTTATGAATGGATTGAGAAA+CGG 0.543062 7_3:+79175877 None:intergenic
GTGAAATAACCTGATTGTTG+TGG 0.560703 7_3:+79175710 None:intergenic
AATAAGAAGGCTGAAAACTT+CGG 0.562437 7_3:-79175567 Msa1127540:CDS
AGAGAATCTCCTCTTACGGC+CGG 0.571878 7_3:-79175960 Msa1127540:five_prime_UTR
GCCTTCTTTCCAACTCAACA+AGG 0.586671 7_3:-79175905 Msa1127540:five_prime_UTR
CGTCATCCTTCACAATGGCG+GGG 0.607064 7_3:-79175799 Msa1127540:exon
AATGGAGCGTGCAAGAGCGA+TGG 0.607251 7_3:+79175935 None:intergenic
AAGGAGAAGGACCATATCGA+GGG 0.621782 7_3:-79174684 Msa1127540:CDS
CAGTATTAGAAACAAACAGA+GGG 0.633054 7_3:+79174715 None:intergenic
AAAGGAGAAGGACCATATCG+AGG 0.654659 7_3:-79174685 Msa1127540:CDS
GAAACAGAATGTTACCGATG+AGG 0.670384 7_3:+79175835 None:intergenic
CTTCGGAGAATGGTATTCCG+AGG 0.682280 7_3:-79175550 Msa1127540:intron
GTGCTCGTCATCCTTCACAA+TGG 0.698351 7_3:-79175804 Msa1127540:exon
ACAGTATTAGAAACAAACAG+AGG 0.698430 7_3:+79174714 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTACTATGTTATCTCAAT+TGG - chr7_3:79175630-79175649 Msa1127540:intron 20.0%
!!! TATTTTAAAAACAAATGTGC+AGG - chr7_3:79175842-79175861 Msa1127540:five_prime_UTR 20.0%
!!! ATCTTCATTTTCTTTATTTC+TGG + chr7_3:79175879-79175898 None:intergenic 20.0%
!!! TTTTACTATGTTATCTCAAT+TGG - chr7_3:79175630-79175649 Msa1127540:intron 20.0%
!!! TATTTTAAAAACAAATGTGC+AGG - chr7_3:79175842-79175861 Msa1127540:five_prime_UTR 20.0%
!!! ATCTTCATTTTCTTTATTTC+TGG + chr7_3:79175879-79175898 None:intergenic 20.0%
!!! TTTATGAATGGATTGAGAAA+CGG + chr7_3:79174755-79174774 None:intergenic 25.0%
! GAAGAAGAAATGTTTATGAA+TGG + chr7_3:79174767-79174786 None:intergenic 25.0%
!!! TTTTCACCTGATTTGTTTTT+AGG - chr7_3:79175139-79175158 Msa1127540:intron 25.0%
!!! ATTTTGATTTATGAGTAGTG+TGG - chr7_3:79175185-79175204 Msa1127540:intron 25.0%
!!! TTGATTTGGATTGATTTTAC+AGG - chr7_3:79175229-79175248 Msa1127540:intron 25.0%
! ATTGAGTACTATGATATTTC+TGG - chr7_3:79175272-79175291 Msa1127540:intron 25.0%
! TTAGTTGTTGATCTATACTA+AGG - chr7_3:79175414-79175433 Msa1127540:intron 25.0%
! AGAAAAAATTGTGCTATAAC+TGG + chr7_3:79175508-79175527 None:intergenic 25.0%
!!! TTTATGAATGGATTGAGAAA+CGG + chr7_3:79174755-79174774 None:intergenic 25.0%
! GAAGAAGAAATGTTTATGAA+TGG + chr7_3:79174767-79174786 None:intergenic 25.0%
!!! TTTTCACCTGATTTGTTTTT+AGG - chr7_3:79175139-79175158 Msa1127540:intron 25.0%
!!! ATTTTGATTTATGAGTAGTG+TGG - chr7_3:79175185-79175204 Msa1127540:intron 25.0%
!!! TTGATTTGGATTGATTTTAC+AGG - chr7_3:79175229-79175248 Msa1127540:intron 25.0%
! ATTGAGTACTATGATATTTC+TGG - chr7_3:79175272-79175291 Msa1127540:intron 25.0%
! TTAGTTGTTGATCTATACTA+AGG - chr7_3:79175414-79175433 Msa1127540:intron 25.0%
! AGAAAAAATTGTGCTATAAC+TGG + chr7_3:79175508-79175527 None:intergenic 25.0%
!! TTGTTGTGTTTTGTTGTCAT+CGG + chr7_3:79174857-79174876 None:intergenic 30.0%
!!! TGGTTGTTTTGGTTGTTTTT+GGG + chr7_3:79174896-79174915 None:intergenic 30.0%
!!! TTGGTTGTTTTGGTTGTTTT+TGG + chr7_3:79174897-79174916 None:intergenic 30.0%
CATTCCACCTTTCAATTTAA+CGG - chr7_3:79174972-79174991 Msa1127540:intron 30.0%
AAGGAAGTTAAGAAAGAAAC+TGG - chr7_3:79175026-79175045 Msa1127540:intron 30.0%
! GTTAAGAAAGAAACTGGTTT+AGG - chr7_3:79175032-79175051 Msa1127540:intron 30.0%
! TTTAGGTTTGACCAATAAGA+AGG - chr7_3:79175049-79175068 Msa1127540:intron 30.0%
AATAAGAAGGCTGAAAACTT+CGG - chr7_3:79175062-79175081 Msa1127540:intron 30.0%
CTTTCAATTGAATTGTACCT+CGG + chr7_3:79175099-79175118 None:intergenic 30.0%
GTTTGACCTAAAAACAAATC+AGG + chr7_3:79175148-79175167 None:intergenic 30.0%
!! GTTGTGTTTGACTTTTGATT+TGG - chr7_3:79175215-79175234 Msa1127540:intron 30.0%
! ATTTTACAGGTTGTTGTGAA+TGG - chr7_3:79175242-79175261 Msa1127540:intron 30.0%
! TTTTACAGGTTGTTGTGAAT+GGG - chr7_3:79175243-79175262 Msa1127540:intron 30.0%
TGTTGATCTATACTAAGGTT+CGG - chr7_3:79175419-79175438 Msa1127540:intron 30.0%
!! AAAACCAATTTTCGAGCTTA+CGG - chr7_3:79175448-79175467 Msa1127540:intron 30.0%
!!! CTGGTCTATTTTAGTCATAA+GGG + chr7_3:79175489-79175508 None:intergenic 30.0%
!!! ACTGGTCTATTTTAGTCATA+AGG + chr7_3:79175490-79175509 None:intergenic 30.0%
!! TAAGAAGCGTTTGAGTTTAT+AGG - chr7_3:79175581-79175600 Msa1127540:CDS 30.0%
CAGTATTAGAAACAAACAGA+GGG + chr7_3:79175917-79175936 None:intergenic 30.0%
ACAGTATTAGAAACAAACAG+AGG + chr7_3:79175918-79175937 None:intergenic 30.0%
!! GTTTGTTTCTAATACTGTTC+TGG - chr7_3:79175920-79175939 Msa1127540:five_prime_UTR 30.0%
!! TTCTAATACTGTTCTGGAAA+AGG - chr7_3:79175926-79175945 Msa1127540:five_prime_UTR 30.0%
!! TTGTTGTGTTTTGTTGTCAT+CGG + chr7_3:79174857-79174876 None:intergenic 30.0%
!!! TGGTTGTTTTGGTTGTTTTT+GGG + chr7_3:79174896-79174915 None:intergenic 30.0%
!!! TTGGTTGTTTTGGTTGTTTT+TGG + chr7_3:79174897-79174916 None:intergenic 30.0%
CATTCCACCTTTCAATTTAA+CGG - chr7_3:79174972-79174991 Msa1127540:intron 30.0%
AAGGAAGTTAAGAAAGAAAC+TGG - chr7_3:79175026-79175045 Msa1127540:intron 30.0%
! GTTAAGAAAGAAACTGGTTT+AGG - chr7_3:79175032-79175051 Msa1127540:intron 30.0%
! TTTAGGTTTGACCAATAAGA+AGG - chr7_3:79175049-79175068 Msa1127540:intron 30.0%
AATAAGAAGGCTGAAAACTT+CGG - chr7_3:79175062-79175081 Msa1127540:intron 30.0%
CTTTCAATTGAATTGTACCT+CGG + chr7_3:79175099-79175118 None:intergenic 30.0%
GTTTGACCTAAAAACAAATC+AGG + chr7_3:79175148-79175167 None:intergenic 30.0%
!! GTTGTGTTTGACTTTTGATT+TGG - chr7_3:79175215-79175234 Msa1127540:intron 30.0%
! ATTTTACAGGTTGTTGTGAA+TGG - chr7_3:79175242-79175261 Msa1127540:intron 30.0%
! TTTTACAGGTTGTTGTGAAT+GGG - chr7_3:79175243-79175262 Msa1127540:intron 30.0%
TGTTGATCTATACTAAGGTT+CGG - chr7_3:79175419-79175438 Msa1127540:intron 30.0%
!! AAAACCAATTTTCGAGCTTA+CGG - chr7_3:79175448-79175467 Msa1127540:intron 30.0%
!!! CTGGTCTATTTTAGTCATAA+GGG + chr7_3:79175489-79175508 None:intergenic 30.0%
!!! ACTGGTCTATTTTAGTCATA+AGG + chr7_3:79175490-79175509 None:intergenic 30.0%
!! TAAGAAGCGTTTGAGTTTAT+AGG - chr7_3:79175581-79175600 Msa1127540:CDS 30.0%
CAGTATTAGAAACAAACAGA+GGG + chr7_3:79175917-79175936 None:intergenic 30.0%
ACAGTATTAGAAACAAACAG+AGG + chr7_3:79175918-79175937 None:intergenic 30.0%
!! GTTTGTTTCTAATACTGTTC+TGG - chr7_3:79175920-79175939 Msa1127540:five_prime_UTR 30.0%
!! TTCTAATACTGTTCTGGAAA+AGG - chr7_3:79175926-79175945 Msa1127540:five_prime_UTR 30.0%
CTTCTTCTTCAATTCCTCAT+CGG - chr7_3:79174780-79174799 Msa1127540:intron 35.0%
TAACATTCTGTTTCAGGATC+AGG - chr7_3:79174803-79174822 Msa1127540:intron 35.0%
!!! GGTTGTTTTGGTTGTTTTTG+GGG + chr7_3:79174895-79174914 None:intergenic 35.0%
!!! TGTTGTGGTTTTGGTTGTTT+TGG + chr7_3:79174907-79174926 None:intergenic 35.0%
! TAACCTGATTGTTGTGGTTT+TGG + chr7_3:79174916-79174935 None:intergenic 35.0%
GTGAAATAACCTGATTGTTG+TGG + chr7_3:79174922-79174941 None:intergenic 35.0%
TAAGAACGTGAAGGAAGATT+GGG + chr7_3:79174948-79174967 None:intergenic 35.0%
CGTTAAATTGAAAGGTGGAA+TGG + chr7_3:79174974-79174993 None:intergenic 35.0%
!! GTTTTGGCCGTTAAATTGAA+AGG + chr7_3:79174982-79175001 None:intergenic 35.0%
!!! AACGGCCAAAACTTTTTTGT+AGG - chr7_3:79174990-79175009 Msa1127540:intron 35.0%
! CACCACCTACAAAAAAGTTT+TGG + chr7_3:79174998-79175017 None:intergenic 35.0%
!!! CAAAACTTTTTTGTAGGTGG+TGG - chr7_3:79174996-79175015 Msa1127540:intron 35.0%
! GAAGTTTTCAGCCTTCTTAT+TGG + chr7_3:79175063-79175082 None:intergenic 35.0%
TTTACAGGTTGTTGTGAATG+GGG - chr7_3:79175244-79175263 Msa1127540:intron 35.0%
! ATCTATACTAAGGTTCGGTT+TGG - chr7_3:79175424-79175443 Msa1127540:intron 35.0%
CTTCTTCTTCAATTCCTCAT+CGG - chr7_3:79174780-79174799 Msa1127540:intron 35.0%
TAACATTCTGTTTCAGGATC+AGG - chr7_3:79174803-79174822 Msa1127540:intron 35.0%
!!! GGTTGTTTTGGTTGTTTTTG+GGG + chr7_3:79174895-79174914 None:intergenic 35.0%
!!! TGTTGTGGTTTTGGTTGTTT+TGG + chr7_3:79174907-79174926 None:intergenic 35.0%
! TAACCTGATTGTTGTGGTTT+TGG + chr7_3:79174916-79174935 None:intergenic 35.0%
GTGAAATAACCTGATTGTTG+TGG + chr7_3:79174922-79174941 None:intergenic 35.0%
TAAGAACGTGAAGGAAGATT+GGG + chr7_3:79174948-79174967 None:intergenic 35.0%
CGTTAAATTGAAAGGTGGAA+TGG + chr7_3:79174974-79174993 None:intergenic 35.0%
!! GTTTTGGCCGTTAAATTGAA+AGG + chr7_3:79174982-79175001 None:intergenic 35.0%
!!! AACGGCCAAAACTTTTTTGT+AGG - chr7_3:79174990-79175009 Msa1127540:intron 35.0%
! CACCACCTACAAAAAAGTTT+TGG + chr7_3:79174998-79175017 None:intergenic 35.0%
!!! CAAAACTTTTTTGTAGGTGG+TGG - chr7_3:79174996-79175015 Msa1127540:intron 35.0%
! GAAGTTTTCAGCCTTCTTAT+TGG + chr7_3:79175063-79175082 None:intergenic 35.0%
TTTACAGGTTGTTGTGAATG+GGG - chr7_3:79175244-79175263 Msa1127540:intron 35.0%
! ATCTATACTAAGGTTCGGTT+TGG - chr7_3:79175424-79175443 Msa1127540:intron 35.0%
AGAGAGAGAATCTCCTCTTA+CGG - chr7_3:79174665-79174684 Msa1127540:CDS 40.0%
!! ACCTTGTTGAGTTGGAAAGA+AGG + chr7_3:79174728-79174747 None:intergenic 40.0%
GAAACAGAATGTTACCGATG+AGG + chr7_3:79174797-79174816 None:intergenic 40.0%
CATCGGTAACATTCTGTTTC+AGG - chr7_3:79174797-79174816 Msa1127540:intron 40.0%
!!! TTGTTTTTGGGGTTTTGCAG+CGG + chr7_3:79174884-79174903 None:intergenic 40.0%
CAACCAAAACCACAACAATC+AGG - chr7_3:79174910-79174929 Msa1127540:intron 40.0%
CTAAGAACGTGAAGGAAGAT+TGG + chr7_3:79174949-79174968 None:intergenic 40.0%
GAATGGTACTAAGAACGTGA+AGG + chr7_3:79174957-79174976 None:intergenic 40.0%
TTGGCCGTTAAATTGAAAGG+TGG + chr7_3:79174979-79174998 None:intergenic 40.0%
!!! GGCCAAAACTTTTTTGTAGG+TGG - chr7_3:79174993-79175012 Msa1127540:intron 40.0%
GTTGCTATATTCTCAGACCT+TGG - chr7_3:79175294-79175313 Msa1127540:intron 40.0%
TATTCTCAGACCTTGGTCAA+TGG - chr7_3:79175301-79175320 Msa1127540:intron 40.0%
ACCTTGGTCAATGGCTATTT+GGG - chr7_3:79175310-79175329 Msa1127540:intron 40.0%
ATCCATGTCTGACTAAGCTT+AGG + chr7_3:79175766-79175785 None:intergenic 40.0%
!! TACTGTTCTGGAAAAGGAGA+AGG - chr7_3:79175932-79175951 Msa1127540:five_prime_UTR 40.0%
AGAGAGAGAATCTCCTCTTA+CGG - chr7_3:79174665-79174684 Msa1127540:CDS 40.0%
!! ACCTTGTTGAGTTGGAAAGA+AGG + chr7_3:79174728-79174747 None:intergenic 40.0%
GAAACAGAATGTTACCGATG+AGG + chr7_3:79174797-79174816 None:intergenic 40.0%
CATCGGTAACATTCTGTTTC+AGG - chr7_3:79174797-79174816 Msa1127540:intron 40.0%
!!! TTGTTTTTGGGGTTTTGCAG+CGG + chr7_3:79174884-79174903 None:intergenic 40.0%
CAACCAAAACCACAACAATC+AGG - chr7_3:79174910-79174929 Msa1127540:intron 40.0%
CTAAGAACGTGAAGGAAGAT+TGG + chr7_3:79174949-79174968 None:intergenic 40.0%
GAATGGTACTAAGAACGTGA+AGG + chr7_3:79174957-79174976 None:intergenic 40.0%
TTGGCCGTTAAATTGAAAGG+TGG + chr7_3:79174979-79174998 None:intergenic 40.0%
!!! GGCCAAAACTTTTTTGTAGG+TGG - chr7_3:79174993-79175012 Msa1127540:intron 40.0%
GTTGCTATATTCTCAGACCT+TGG - chr7_3:79175294-79175313 Msa1127540:intron 40.0%
TATTCTCAGACCTTGGTCAA+TGG - chr7_3:79175301-79175320 Msa1127540:intron 40.0%
ACCTTGGTCAATGGCTATTT+GGG - chr7_3:79175310-79175329 Msa1127540:intron 40.0%
ATCCATGTCTGACTAAGCTT+AGG + chr7_3:79175766-79175785 None:intergenic 40.0%
!! TACTGTTCTGGAAAAGGAGA+AGG - chr7_3:79175932-79175951 Msa1127540:five_prime_UTR 40.0%
GCCTTCTTTCCAACTCAACA+AGG - chr7_3:79174724-79174743 Msa1127540:CDS 45.0%
!! ACGGTGTTACCTTGTTGAGT+TGG + chr7_3:79174736-79174755 None:intergenic 45.0%
!! TGTAGGTGGTGGAAAGAAGA+AGG - chr7_3:79175007-79175026 Msa1127540:intron 45.0%
AGGCTGAAAACTTCGGAGAA+TGG - chr7_3:79175069-79175088 Msa1127540:intron 45.0%
GACCTTGGTCAATGGCTATT+TGG - chr7_3:79175309-79175328 Msa1127540:intron 45.0%
TCCCAAATAGCCATTGACCA+AGG + chr7_3:79175314-79175333 None:intergenic 45.0%
TGCACCGTAAGCTCGAAAAT+TGG + chr7_3:79175455-79175474 None:intergenic 45.0%
AGCCTAAGCTTAGTCAGACA+TGG - chr7_3:79175761-79175780 Msa1127540:CDS 45.0%
AAAGGAGAAGGACCATATCG+AGG - chr7_3:79175944-79175963 Msa1127540:five_prime_UTR 45.0%
AAGGAGAAGGACCATATCGA+GGG - chr7_3:79175945-79175964 Msa1127540:five_prime_UTR 45.0%
GCCTTCTTTCCAACTCAACA+AGG - chr7_3:79174724-79174743 Msa1127540:CDS 45.0%
!! ACGGTGTTACCTTGTTGAGT+TGG + chr7_3:79174736-79174755 None:intergenic 45.0%
!! TGTAGGTGGTGGAAAGAAGA+AGG - chr7_3:79175007-79175026 Msa1127540:intron 45.0%
AGGCTGAAAACTTCGGAGAA+TGG - chr7_3:79175069-79175088 Msa1127540:intron 45.0%
GACCTTGGTCAATGGCTATT+TGG - chr7_3:79175309-79175328 Msa1127540:intron 45.0%
TCCCAAATAGCCATTGACCA+AGG + chr7_3:79175314-79175333 None:intergenic 45.0%
TGCACCGTAAGCTCGAAAAT+TGG + chr7_3:79175455-79175474 None:intergenic 45.0%
AGCCTAAGCTTAGTCAGACA+TGG - chr7_3:79175761-79175780 Msa1127540:CDS 45.0%
AAAGGAGAAGGACCATATCG+AGG - chr7_3:79175944-79175963 Msa1127540:five_prime_UTR 45.0%
AAGGAGAAGGACCATATCGA+GGG - chr7_3:79175945-79175964 Msa1127540:five_prime_UTR 45.0%
!! ATAAATAAATAAATACATTT+GGG + chr7_3:79175387-79175406 None:intergenic 5.0%
!! AATAAATAAATAAATACATT+TGG + chr7_3:79175388-79175407 None:intergenic 5.0%
!! ATAAATAAATAAATACATTT+GGG + chr7_3:79175387-79175406 None:intergenic 5.0%
!! AATAAATAAATAAATACATT+TGG + chr7_3:79175388-79175407 None:intergenic 5.0%
AGAGAATCTCCTCTTACGGC+CGG - chr7_3:79174669-79174688 Msa1127540:CDS 50.0%
GGAAAGAAGGCGAGAGAGAA+TGG + chr7_3:79174715-79174734 None:intergenic 50.0%
GTGCTCGTCATCCTTCACAA+TGG - chr7_3:79174825-79174844 Msa1127540:intron 50.0%
CTCGTCATCCTTCACAATGG+CGG - chr7_3:79174828-79174847 Msa1127540:intron 50.0%
TCGTCATCCTTCACAATGGC+GGG - chr7_3:79174829-79174848 Msa1127540:intron 50.0%
CTTCGGAGAATGGTATTCCG+AGG - chr7_3:79175079-79175098 Msa1127540:intron 50.0%
CTGGAGCAAAACCCTCGATA+TGG + chr7_3:79175959-79175978 None:intergenic 50.0%
! TATCGAGGGTTTTGCTCCAG+AGG - chr7_3:79175959-79175978 Msa1127540:five_prime_UTR 50.0%
AGAGAATCTCCTCTTACGGC+CGG - chr7_3:79174669-79174688 Msa1127540:CDS 50.0%
GGAAAGAAGGCGAGAGAGAA+TGG + chr7_3:79174715-79174734 None:intergenic 50.0%
GTGCTCGTCATCCTTCACAA+TGG - chr7_3:79174825-79174844 Msa1127540:intron 50.0%
CTCGTCATCCTTCACAATGG+CGG - chr7_3:79174828-79174847 Msa1127540:intron 50.0%
TCGTCATCCTTCACAATGGC+GGG - chr7_3:79174829-79174848 Msa1127540:intron 50.0%
CTTCGGAGAATGGTATTCCG+AGG - chr7_3:79175079-79175098 Msa1127540:intron 50.0%
CTGGAGCAAAACCCTCGATA+TGG + chr7_3:79175959-79175978 None:intergenic 50.0%
! TATCGAGGGTTTTGCTCCAG+AGG - chr7_3:79175959-79175978 Msa1127540:five_prime_UTR 50.0%
AATGGAGCGTGCAAGAGCGA+TGG + chr7_3:79174697-79174716 None:intergenic 55.0%
CGTCATCCTTCACAATGGCG+GGG - chr7_3:79174830-79174849 Msa1127540:intron 55.0%
AATGGAGCGTGCAAGAGCGA+TGG + chr7_3:79174697-79174716 None:intergenic 55.0%
CGTCATCCTTCACAATGGCG+GGG - chr7_3:79174830-79174849 Msa1127540:intron 55.0%
ATCGGTCCCCGCCATTGTGA+AGG + chr7_3:79174839-79174858 None:intergenic 60.0%
ATCGGTCCCCGCCATTGTGA+AGG + chr7_3:79174839-79174858 None:intergenic 60.0%
GCGTGCAAGAGCGATGGTGC+CGG + chr7_3:79174691-79174710 None:intergenic 65.0%
GCGTGCAAGAGCGATGGTGC+CGG + chr7_3:79174691-79174710 None:intergenic 65.0%
!! GCGATGGTGCCGGCCGTAAG+AGG + chr7_3:79174681-79174700 None:intergenic 70.0%
!! GCGATGGTGCCGGCCGTAAG+AGG + chr7_3:79174681-79174700 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 79174656 79175995 79174656 ID=Msa1127540;Name=Msa1127540
chr7_3 mRNA 79174656 79175995 79174656 ID=Msa1127540-mRNA-1;Parent=Msa1127540;Name=Msa1127540-mRNA-1;_AED=0.15;_eAED=0.15;_QI=188|0.33|0.25|0.5|1|1|4|0|104
chr7_3 exon 79174656 79174787 79174656 ID=Msa1127540-mRNA-1:exon:22347;Parent=Msa1127540-mRNA-1
chr7_3 exon 79175395 79175400 79175395 ID=Msa1127540-mRNA-1:exon:22346;Parent=Msa1127540-mRNA-1
chr7_3 exon 79175551 79175639 79175551 ID=Msa1127540-mRNA-1:exon:22345;Parent=Msa1127540-mRNA-1
chr7_3 exon 79175720 79175995 79175720 ID=Msa1127540-mRNA-1:exon:22344;Parent=Msa1127540-mRNA-1
chr7_3 five_prime_UTR 79175808 79175995 79175808 ID=Msa1127540-mRNA-1:five_prime_utr;Parent=Msa1127540-mRNA-1
chr7_3 CDS 79175720 79175807 79175720 ID=Msa1127540-mRNA-1:cds;Parent=Msa1127540-mRNA-1
chr7_3 CDS 79175551 79175639 79175551 ID=Msa1127540-mRNA-1:cds;Parent=Msa1127540-mRNA-1
chr7_3 CDS 79175395 79175400 79175395 ID=Msa1127540-mRNA-1:cds;Parent=Msa1127540-mRNA-1
chr7_3 CDS 79174656 79174787 79174656 ID=Msa1127540-mRNA-1:cds;Parent=Msa1127540-mRNA-1
Gene Sequence

>Msa1127540

ATGGCGGGGACCGATGACAACAAAACACAACAACAATCCGCTGCAAAACCCCAAAAACAACCAAAACAACCAAAACCACAACAATCAGGTGGTGGAAAGAAGAAGGAAGTTAAGAAAGAAACTGGTTTAGGTTTGACCAATAAGAAGGCTGAAAACTTCGGAGAATGGTATTCCGAGGTTGTTGCGTTTTTTGATCCAGAAATAAAGAAAATGAAGATCAAGAACTGCTACTTCCCTCTGTTTGTTTCTAATACTGTTCTGGAAAAGGAGAAGGACCATATCGAGGGTTTTGCTCCAGAGGTGAGAGTCATTTAA

Protein sequence

>Msa1127540

MAGTDDNKTQQQSAAKPQKQPKQPKPQQSGGGKKKEVKKETGLGLTNKKAENFGEWYSEVVAFFDPEIKKMKIKNCYFPLFVSNTVLEKEKDHIEGFAPEVRVI*