AlfalfaGEDB | Msa0664540

M. sativa cultivar zhongmu-4 / Msa0664540

KEGG: K17301
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005911 GO:0006810 GO:0006888 GO:0006890 GO:0006891 GO:0008150 GO:0009506 GO:0012505 GO:0012506 GO:0016020 GO:0016192 GO:0030054 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0097708 GO:0098588 GO:0098796 GO:0098805
PFAM: PF01602.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664540	XP_013454585.1	97.552	776	1	1	1	776	194	951	0.0	1546

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664540	sp\|Q9SV21\|COPB1_ARATH	80.387	775	132	3	1	775	194	948	0.0	1303

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664540	A0A072UGQ1	97.552	776	1	1	1	776	194	951	0.0	1546

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000880	Msa0664540	0.851558	8.208069e-61	-8.615850e-47
Msa0000910	Msa0664540	0.809272	2.054240e-50	-8.615850e-47
Msa0001960	Msa0664540	0.808284	3.341169e-50	-8.615850e-47
Msa0002680	Msa0664540	0.869073	4.067914e-66	-8.615850e-47
Msa0002710	Msa0664540	0.847803	9.174513e-60	-8.615850e-47
Msa0003220	Msa0664540	0.820988	5.126024e-53	-8.615850e-47
Msa0010910	Msa0664540	0.843617	1.255062e-58	-8.615850e-47
Msa0012940	Msa0664540	0.842355	2.720159e-58	-8.615850e-47
Msa0016540	Msa0664540	0.821716	3.481841e-53	-8.615850e-47
Msa0024400	Msa0664540	0.800052	1.726605e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664540	MtrunA17_Chr4g0002381	97.552	776	1	1	1	776	194	951	0.0	1546
Msa0664540	MtrunA17_Chr7g0272401	79.710	138	26	2	1	137	111	247	1.60e-65	218
Msa0664540	MtrunA17_Chr7g0272421	84.375	64	10	0	713	776	18	81	1.59e-30	115
Msa0664540	MtrunA17_Chr4g0074881	64.384	73	24	2	121	192	1	72	1.18e-22	92.4
Msa0664540	MtrunA17_Chr5g0400791	64.912	57	20	0	424	480	17	73	4.39e-17	76.6
Msa0664540	MtrunA17_Chr6g0467491	48.750	80	36	1	401	480	1	75	1.84e-13	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0664540	AT4G31480.7	80.387	775	132	3	1	775	194	948	1303
Msa0664540	AT4G31480.1	80.387	775	132	3	1	775	194	948	1303
Msa0664540	AT4G31480.9	80.387	775	132	3	1	775	194	948	1303
Msa0664540	AT4G31480.5	80.387	775	132	3	1	775	194	948	1303
Msa0664540	AT4G31480.8	80.387	775	132	3	1	775	194	948	1303
Msa0664540	AT4G31480.2	80.387	775	132	3	1	775	194	948	1303
Msa0664540	AT4G31480.4	80.387	775	132	3	1	775	194	948	1303
Msa0664540	AT4G31480.3	80.387	775	132	3	1	775	217	971	1302
Msa0664540	AT4G31480.6	80.387	775	132	3	1	775	217	971	1302
Msa0664540	AT4G31490.1	80.207	773	133	3	1	773	194	946	1293

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Find 186 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCACTTTGAAGCAGAA+GGG	0.616042	4_4:-3547209	Msa0664540:CDS
AAAGTTTGTAGGAATAATAA+GGG	0.384005	4_4:-3551574	Msa0664540:CDS
AACTCTCCAGAATTTATGTT+TGG	0.360698	4_4:-3549716	Msa0664540:CDS
AAGACAGAGATCCCTGCACA+AGG	0.605670	4_4:+3550660	None:intergenic
AAGACTCAGAGCAATTCCCT+GGG	0.620234	4_4:+3547238	None:intergenic
AAGGAACTCACGGTGGAGTC+AGG	0.457955	4_4:+3547670	None:intergenic
AAGGTTTCTTCCACTGAAAC+TGG	0.299306	4_4:-3549601	Msa0664540:CDS
AATCGCATTCTTCAGCTCAC+TGG	0.421276	4_4:-3549829	Msa0664540:CDS
AATTGATTAAGAAAGTTTGT+AGG	0.415829	4_4:-3551585	Msa0664540:CDS
ACAACAGTACTCGCCACCTC+CGG	0.567962	4_4:+3551097	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTCCTAATCATGATATTAGA+AGG	-	chr4_4:3547627-3547646	Msa0664540:intron	30.0%
TACACCTAAGAATATTGATC+AGG	-	chr4_4:3547679-3547698	Msa0664540:intron	30.0%
ACAACCTGATCAATATTCTT+AGG	+	chr4_4:3547686-3547705	None:intergenic	30.0%
TGGATACTTTCTATCAGATT+CGG	-	chr4_4:3547960-3547979	Msa0664540:intron	30.0%
CTCAAAAGTTGAAGTTAACA+AGG	-	chr4_4:3548381-3548400	Msa0664540:intron	30.0%
GAATCATTATCAATTGGATG+TGG	+	chr4_4:3548469-3548488	None:intergenic	30.0%
ATTAGATTGCTGTGTAATAC+TGG	-	chr4_4:3548511-3548530	Msa0664540:intron	30.0%
CATGCAAAACAAAAACTTCA+AGG	+	chr4_4:3548770-3548789	None:intergenic	30.0%
AACTCTCCAGAATTTATGTT+TGG	-	chr4_4:3549196-3549215	Msa0664540:intron	30.0%
CTAACTCCAAACATAAATTC+TGG	+	chr4_4:3549205-3549224	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	3547185	3551749	3547185	ID=Msa0664540;Name=Msa0664540
chr4_4	mRNA	3547185	3551749	3547185	ID=Msa0664540-mRNA-1;Parent=Msa0664540;Name=Msa0664540-mRNA-1;_AED=0.02;_eAED=0.02;_QI=42\|0.66\|0.75\|1\|1\|1\|4\|11\|776
chr4_4	exon	3547185	3547403	3547185	ID=Msa0664540-mRNA-1:exon:1166;Parent=Msa0664540-mRNA-1
chr4_4	exon	3547681	3547766	3547681	ID=Msa0664540-mRNA-1:exon:1165;Parent=Msa0664540-mRNA-1
chr4_4	exon	3549435	3550001	3549435	ID=Msa0664540-mRNA-1:exon:1164;Parent=Msa0664540-mRNA-1
chr4_4	exon	3550238	3551749	3550238	ID=Msa0664540-mRNA-1:exon:1163;Parent=Msa0664540-mRNA-1
chr4_4	five_prime_UTR	3551708	3551749	3551708	ID=Msa0664540-mRNA-1:five_prime_utr;Parent=Msa0664540-mRNA-1
chr4_4	CDS	3550238	3551707	3550238	ID=Msa0664540-mRNA-1:cds;Parent=Msa0664540-mRNA-1
chr4_4	CDS	3549435	3550001	3549435	ID=Msa0664540-mRNA-1:cds;Parent=Msa0664540-mRNA-1
chr4_4	CDS	3547681	3547766	3547681	ID=Msa0664540-mRNA-1:cds;Parent=Msa0664540-mRNA-1
chr4_4	CDS	3547196	3547403	3547196	ID=Msa0664540-mRNA-1:cds;Parent=Msa0664540-mRNA-1
chr4_4	three_prime_UTR	3547185	3547195	3547185	ID=Msa0664540-mRNA-1:three_prime_utr;Parent=Msa0664540-mRNA-1

Gene Sequence

>Msa0664540

ATGCTGTTTTCGTGTGCGCAAGATCGTGCTGTGAATTATCTTTTTACGAATATTGATAGGATTATTGATTGGGGGGAACAGTTACAAATGGTGGTTTTGGAATTGATTAAGAAAGTTTGTAGGAATAATAAGGGAGAGAAAGGGAAATATATTAAGATTATTATTTCTTTGTTGAGTGCTAATTCTACCGCTGTTGTTTATGAATGTGCTGGTACGCTTGTTTCCCTTAGTTCTGCACCGACCGCGATTAAAGCGGCTGCGAATACTTATTGTCAGTTGTTGCTTTCTCAAAGTGATAACAATGTGAAGCTTATTGTGCTTGATCGACTTAACGAGCTTAAGAGGGATAATAGGGAGATTATGGTTGATATGGTTATGGATGTCCTTAGGGCACTTTCGACTCCTAATCATGATATTAGAAGGAAAACTATTGATATTGCTCTTGAGCTTATTACACCTAAGAATATTGATCAGGTTGTTATGATGCTTAAGAAGGAGGTTGTTAAGACGCAGAGCGGGGAGCATGAGAAGAATGGGGAGTATAGGCAGATGTTGGTGCAGGCAATTCATACTTGTGCTATTAAGTTTCCGGAGGTGGCGAGTACTGTTGTGCATTTGTTGATGGATTTCTTGGGAGATACAAATGTTGCGTCTGCTATGGATGTGGTTGTTTTCGTGCGGGAGATTATTGAGACAAACCCTAAGCTGCGTGTTTCTATCATCACTAGGCTTTTGGATACTTTCTATCAGATTCGGGCTGCTAGGGTTTGTTCTTGTGCTCTGTGGATTATTGGTGAGTATTGTTTGTCTCTTTCGGAGGTTGAGAGTGGAATTGCAACTATTAAGCAGTGTCTTGGTGATCTTCCCTTTTACACCATCTCTGAGGATGGAGAGGGTCAGGAGACATCAAAGGCTGTGCAGCAGGTGAACTCGACCACTGTGTCTTCTAGGAGGCCTGCGATTCTTGCCGATGGGACCTATGCTACCCAGAGTGCTGCTCATGAGACTGCCATGTCACCGCCTACCCTTGTGCAGGGATCTCTGTCTTCTATTGGGAACTTGAGATCTCTGATTCTTTCGGGTGATTTCTTCCTTGGGGCAGTTGTCGCATGTACACTGACAAAGCTTATCTTAAGGTTGGAAGAGGTTCAGACCTCAAAAGTTGAAGTTAACAAGGCAACTTCACAGTCCTTGTTGATCATGGTCTCAATGCTGCAGCTTGGTCAGTCTTCAGTTCTTCCACATCCAATTGATAATGATTCTCATGACAGGGTCGTCCTTTGCATTAGATTGCTGTGTAATACTGGTGATGAGATAAGGAAGATATGGCTGGAATCCTGCAGGCAGAGCTTTGTGAAGATGCTCGCGGATAAGCAGCGCCGTGAGACCGAGGAGATTAAAGCAAAGGCACAGATTTCCAATGCACAGCCTGATGACCTCATCGACTTTTATCACTTGAAGAGCAGAAAGTACACTTACTCATCTGGTATTCATTCAAATGTTCAATCTGTCTATGCTTTTCAGGGTATGAGCCAACTTGAGCTCGAAGATGAGGTGCAGGACGATCTTAAACGTGCCACTGGAGAGTTTACAAAGGATGCTGATGATGCAAATAAACTTAATCGCATTCTTCAGCTCACTGGGTTCAGTGATCCTGTCTATGCTGAAGCATATGTAACAGTGCATCATTATGACATTGTCCTTGATGTTACTGTCATCAACCGGACCAAGGAAACTCTCCAGAATTTATGTTTGGAGTTAGCAACTATGGGTGATCTCAAACTTGTTGAGCGTCCACAAAACTACACTCTGGCTCCAGAATCAAGCAAACAGATCAAGGCCAACATCAAGGTTTCTTCCACTGAAACTGGAGTTATATTCGGTAATATAGTTTATGAGACATCTTCAAATGTTCTTGAGAGAACAGTTATTGTTCTAAATGACATTCATATTGATATCATGGACTATATTGCTCCTGCATCTTGTGCTGATGTGGCCTTTAGAACTATGTGGGCTGAGTTTGAGTGGGAAAACAAGGTTGCTGTAAATACGGTATTGCAAGATGAGAGGGAGTTCCTGGGCCACATTATCAAGTCTACAAATATGAAGTGCCTGACTCCACCCTCTGCATTGGAAGGTGAGTGTGGTTTTCTAGCTGCAAATCTGTATGCAAAGAGTGTTTTTGGGGAAGATGCTCTGGTGAATGTTAGCATTGAGAAGCAATCCGATGGTAAATTGAGCGGTTATATCAGAATAAGAAGTAAAACCCAGGGAATTGCTCTGAGTCTTGGGGATAAAATCACTTTGAAGCAGAAGGGAACTGCTCAATAG

Protein sequence

>Msa0664540

MLFSCAQDRAVNYLFTNIDRIIDWGEQLQMVVLELIKKVCRNNKGEKGKYIKIIISLLSANSTAVVYECAGTLVSLSSAPTAIKAAANTYCQLLLSQSDNNVKLIVLDRLNELKRDNREIMVDMVMDVLRALSTPNHDIRRKTIDIALELITPKNIDQVVMMLKKEVVKTQSGEHEKNGEYRQMLVQAIHTCAIKFPEVASTVVHLLMDFLGDTNVASAMDVVVFVREIIETNPKLRVSIITRLLDTFYQIRAARVCSCALWIIGEYCLSLSEVESGIATIKQCLGDLPFYTISEDGEGQETSKAVQQVNSTTVSSRRPAILADGTYATQSAAHETAMSPPTLVQGSLSSIGNLRSLILSGDFFLGAVVACTLTKLILRLEEVQTSKVEVNKATSQSLLIMVSMLQLGQSSVLPHPIDNDSHDRVVLCIRLLCNTGDEIRKIWLESCRQSFVKMLADKQRRETEEIKAKAQISNAQPDDLIDFYHLKSRKYTYSSGIHSNVQSVYAFQGMSQLELEDEVQDDLKRATGEFTKDADDANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSSNVLERTVIVLNDIHIDIMDYIAPASCADVAFRTMWAEFEWENKVAVNTVLQDEREFLGHIIKSTNMKCLTPPSALEGECGFLAANLYAKSVFGEDALVNVSIEKQSDGKLSGYIRIRSKTQGIALSLGDKITLKQKGTAQ*