AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0664540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0664540 MtrunA17_Chr4g0002381 97.552 776 1 1 1 776 194 951 0.0 1546
Msa0664540 MtrunA17_Chr7g0272401 79.710 138 26 2 1 137 111 247 1.60e-65 218
Msa0664540 MtrunA17_Chr7g0272421 84.375 64 10 0 713 776 18 81 1.59e-30 115
Msa0664540 MtrunA17_Chr4g0074881 64.384 73 24 2 121 192 1 72 1.18e-22 92.4
Msa0664540 MtrunA17_Chr5g0400791 64.912 57 20 0 424 480 17 73 4.39e-17 76.6
Msa0664540 MtrunA17_Chr6g0467491 48.750 80 36 1 401 480 1 75 1.84e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0664540 AT4G31480.7 80.387 775 132 3 1 775 194 948 0.0 1303
Msa0664540 AT4G31480.1 80.387 775 132 3 1 775 194 948 0.0 1303
Msa0664540 AT4G31480.9 80.387 775 132 3 1 775 194 948 0.0 1303
Msa0664540 AT4G31480.5 80.387 775 132 3 1 775 194 948 0.0 1303
Msa0664540 AT4G31480.8 80.387 775 132 3 1 775 194 948 0.0 1303
Msa0664540 AT4G31480.2 80.387 775 132 3 1 775 194 948 0.0 1303
Msa0664540 AT4G31480.4 80.387 775 132 3 1 775 194 948 0.0 1303
Msa0664540 AT4G31480.3 80.387 775 132 3 1 775 217 971 0.0 1302
Msa0664540 AT4G31480.6 80.387 775 132 3 1 775 217 971 0.0 1302
Msa0664540 AT4G31490.1 80.207 773 133 3 1 773 194 946 0.0 1293
Msa0664540 AT4G31490.3 80.207 773 133 3 1 773 194 946 0.0 1293
Msa0664540 AT4G31490.2 80.207 773 133 3 1 773 194 946 0.0 1293

Find 186 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATCTGTTTGCTTGATTC+TGG 0.132054 4_4:+3549634 None:intergenic
TCTTGTGCTCTGTGGATTAT+TGG 0.193178 4_4:-3550914 Msa0664540:CDS
GAAAGTTTGTAGGAATAATA+AGG 0.193674 4_4:-3551575 Msa0664540:CDS
TACTTGTGCTATTAAGTTTC+CGG 0.200425 4_4:-3551116 Msa0664540:CDS
TTGAGATCTCTGATTCTTTC+GGG 0.206526 4_4:-3550626 Msa0664540:CDS
TTCTATCATCACTAGGCTTT+TGG 0.218921 4_4:-3550972 Msa0664540:CDS
CTTTCGGGTGATTTCTTCCT+TGG 0.227308 4_4:-3550611 Msa0664540:CDS
ACGAGCTTAAGAGGGATAAT+AGG 0.244193 4_4:-3551354 Msa0664540:CDS
ATCCTCAGAGATGGTGTAAA+AGG 0.264720 4_4:+3550820 None:intergenic
ATGTTTGGAGTTAGCAACTA+TGG 0.269674 4_4:-3549701 Msa0664540:CDS
CTTGAGATCTCTGATTCTTT+CGG 0.271553 4_4:-3550627 Msa0664540:CDS
GAGGGATAATAGGGAGATTA+TGG 0.272228 4_4:-3551344 Msa0664540:CDS
GCATTTGTTGATGGATTTCT+TGG 0.285633 4_4:-3551074 Msa0664540:CDS
CAGGGATCTCTGTCTTCTAT+TGG 0.298380 4_4:-3550653 Msa0664540:CDS
AAGGTTTCTTCCACTGAAAC+TGG 0.299306 4_4:-3549601 Msa0664540:CDS
TTTCGGGTGATTTCTTCCTT+GGG 0.305867 4_4:-3550610 Msa0664540:CDS
TGGATACTTTCTATCAGATT+CGG 0.310141 4_4:-3550952 Msa0664540:CDS
GCAAGATGAGAGGGAGTTCC+TGG 0.315233 4_4:-3547724 Msa0664540:CDS
ACAGTTACAAATGGTGGTTT+TGG 0.320506 4_4:-3551608 Msa0664540:CDS
TAGGGAGATTATGGTTGATA+TGG 0.324072 4_4:-3551335 Msa0664540:CDS
AGGGAATTGCTCTGAGTCTT+GGG 0.325449 4_4:-3547235 Msa0664540:CDS
ACAACCTGATCAATATTCTT+AGG 0.329715 4_4:+3551229 None:intergenic
TATTGATAGGATTATTGATT+GGG 0.345042 4_4:-3551635 Msa0664540:CDS
GATTATGGTTGATATGGTTA+TGG 0.347749 4_4:-3551329 Msa0664540:CDS
ATATGGTTATGGATGTCCTT+AGG 0.354045 4_4:-3551318 Msa0664540:CDS
GGATACTTTCTATCAGATTC+GGG 0.357062 4_4:-3550951 Msa0664540:CDS
ACTCGACCACTGTGTCTTCT+AGG 0.357892 4_4:-3550757 Msa0664540:CDS
AACTCTCCAGAATTTATGTT+TGG 0.360698 4_4:-3549716 Msa0664540:CDS
TGCTATTAAGTTTCCGGAGG+TGG 0.364681 4_4:-3551110 Msa0664540:CDS
ATGATAGAAACACGCAGCTT+AGG 0.375297 4_4:+3550986 None:intergenic
TTCCTTCTAATATCATGATT+AGG 0.375355 4_4:+3551283 None:intergenic
TACTGTTGTGCATTTGTTGA+TGG 0.380765 4_4:-3551083 Msa0664540:CDS
ATATTGATAGGATTATTGAT+TGG 0.381238 4_4:-3551636 Msa0664540:CDS
ACTGAAACTGGAGTTATATT+CGG 0.381365 4_4:-3549589 Msa0664540:CDS
AAAGTTTGTAGGAATAATAA+GGG 0.384005 4_4:-3551574 Msa0664540:CDS
CTAACTCCAAACATAAATTC+TGG 0.384969 4_4:+3549710 None:intergenic
CTCCTAATCATGATATTAGA+AGG 0.385310 4_4:-3551285 Msa0664540:CDS
TGAGTATTGTTTGTCTCTTT+CGG 0.395014 4_4:-3550891 Msa0664540:CDS
ATCGACTTAACGAGCTTAAG+AGG 0.398249 4_4:-3551363 Msa0664540:CDS
TTCACAGTCCTTGTTGATCA+TGG 0.398314 4_4:-3550504 Msa0664540:CDS
CGAGCTTAAGAGGGATAATA+GGG 0.400973 4_4:-3551353 Msa0664540:CDS
ATTAGATTGCTGTGTAATAC+TGG 0.411143 4_4:-3550401 Msa0664540:CDS
CTCTGAGGATGGAGAGGGTC+AGG 0.412565 4_4:-3550807 Msa0664540:CDS
CAGGGAATTGCTCTGAGTCT+TGG 0.412830 4_4:-3547236 Msa0664540:CDS
TCGCGGTCGGTGCAGAACTA+AGG 0.413611 4_4:+3551461 None:intergenic
TGCCTTTGCTTTAATCTCCT+CGG 0.413901 4_4:+3550298 None:intergenic
AATTGATTAAGAAAGTTTGT+AGG 0.415829 4_4:-3551585 Msa0664540:CDS
GCGGGGAGCATGAGAAGAAT+GGG 0.418503 4_4:-3551171 Msa0664540:CDS
AATCGCATTCTTCAGCTCAC+TGG 0.421276 4_4:-3549829 Msa0664540:CDS
AGGGATCTCTGTCTTCTATT+GGG 0.424819 4_4:-3550652 Msa0664540:CDS
AGGAATAATAAGGGAGAGAA+AGG 0.425300 4_4:-3551565 Msa0664540:CDS
TCTATCAGATTCGGGCTGCT+AGG 0.430384 4_4:-3550943 Msa0664540:CDS
CATTTGTTGATGGATTTCTT+GGG 0.431544 4_4:-3551073 Msa0664540:CDS
TACACCTAAGAATATTGATC+AGG 0.434043 4_4:-3551233 Msa0664540:CDS
TCTCTTGTTCAGCTCTGCAT+TGG 0.438702 4_4:-3547393 Msa0664540:intron
TCTGGAGAGTTTCCTTGGTC+CGG 0.441384 4_4:+3549728 None:intergenic
AGCGGGGAGCATGAGAAGAA+TGG 0.445155 4_4:-3551172 Msa0664540:CDS
TGATAGAAACACGCAGCTTA+GGG 0.445334 4_4:+3550987 None:intergenic
TAAATTCTGGAGAGTTTCCT+TGG 0.445694 4_4:+3549723 None:intergenic
TCATGAGAATCATTATCAAT+TGG 0.450088 4_4:+3550440 None:intergenic
TATGGTTATGGATGTCCTTA+GGG 0.454595 4_4:-3551317 Msa0664540:CDS
CTTTAATCTCCTCGGTCTCA+CGG 0.455907 4_4:+3550306 None:intergenic
AAGGAACTCACGGTGGAGTC+AGG 0.457955 4_4:+3547670 None:intergenic
CAAGACTCAGAGCAATTCCC+TGG 0.458458 4_4:+3547237 None:intergenic
TGACATTCATATTGATATCA+TGG 0.459711 4_4:-3549509 Msa0664540:CDS
GACATCAAAGGCTGTGCAGC+AGG 0.460529 4_4:-3550783 Msa0664540:CDS
GTCCCATCGGCAAGAATCGC+AGG 0.461816 4_4:+3550731 None:intergenic
GACAAAGCTTATCTTAAGGT+TGG 0.462489 4_4:-3550567 Msa0664540:CDS
GTCATAGGTTGCTGTAAATA+CGG 0.462568 4_4:-3547751 Msa0664540:intron
ATGAGAAGAATGGGGAGTAT+AGG 0.463060 4_4:-3551162 Msa0664540:CDS
CGCGGTCGGTGCAGAACTAA+GGG 0.465199 4_4:+3551462 None:intergenic
AGCAAGATGCTTCGAGTAAG+AGG 0.478958 4_4:-3551720 Msa0664540:five_prime_UTR
TTGATAATGATTCTCATGAC+AGG 0.479100 4_4:-3550436 Msa0664540:CDS
CACTGACAAAGCTTATCTTA+AGG 0.479698 4_4:-3550571 Msa0664540:CDS
CTATCAGATTCGGGCTGCTA+GGG 0.480565 4_4:-3550942 Msa0664540:CDS
CAGTCTCATGAGCAGCACTC+TGG 0.484256 4_4:+3550699 None:intergenic
CTCAGCCCACATAGTTCTAA+AGG 0.487112 4_4:+3549453 None:intergenic
ATCGCATTCTTCAGCTCACT+GGG 0.488030 4_4:-3549828 Msa0664540:CDS
AGAATCAAGCAAACAGATCA+AGG 0.488212 4_4:-3549632 Msa0664540:CDS
GTCACCGCCTACCCTTGTGC+AGG 0.489447 4_4:-3550672 Msa0664540:CDS
GTGATGAGATAAGGAAGATA+TGG 0.490653 4_4:-3550379 Msa0664540:CDS
GCTCAGTACACTTACTCATC+TGG 0.492043 4_4:-3549985 Msa0664540:intron
TTGTTCAGCTCTGCATTGGA+AGG 0.494510 4_4:-3547389 Msa0664540:intron
AGGTTGTTAAGACGCAGAGC+GGG 0.495077 4_4:-3551189 Msa0664540:CDS
CTTCACAAAGCTCTGCCTGC+AGG 0.495433 4_4:+3550349 None:intergenic
TAAAATCACTTTGAAGCAGA+AGG 0.501025 4_4:-3547210 Msa0664540:CDS
GCTTATCTTAAGGTTGGAAG+AGG 0.501167 4_4:-3550561 Msa0664540:CDS
TAAAAGTCGATGAGGTCATC+AGG 0.502253 4_4:+3550257 None:intergenic
GCAACTATTAAGCAGTGTCT+TGG 0.506903 4_4:-3550851 Msa0664540:CDS
TCCTGCATCTTGTGCTGATG+TGG 0.507317 4_4:-3549476 Msa0664540:CDS
GGTTGTTATGATGCTTAAGA+AGG 0.507964 4_4:-3551212 Msa0664540:CDS
TCCTCAGAGATGGTGTAAAA+GGG 0.521024 4_4:+3550821 None:intergenic
AGTCTCATGAGCAGCACTCT+GGG 0.521227 4_4:+3550700 None:intergenic
AGTGGAAGAAACCTTGATGT+TGG 0.521670 4_4:+3549609 None:intergenic
TAGACTTGATAATGTGGCCC+AGG 0.522945 4_4:+3547706 None:intergenic
GCCACATCAGCACAAGATGC+AGG 0.523769 4_4:+3549475 None:intergenic
TTGATGTTACTGTCATCAAC+CGG 0.524042 4_4:-3549747 Msa0664540:CDS
AGGCCTGCGATTCTTGCCGA+TGG 0.526847 4_4:-3550734 Msa0664540:CDS
TGTTATGATGCTTAAGAAGG+AGG 0.528121 4_4:-3551209 Msa0664540:CDS
TGTTTGGAGTTAGCAACTAT+GGG 0.530203 4_4:-3549700 Msa0664540:CDS
ACCCTCTCCATCCTCAGAGA+TGG 0.532455 4_4:+3550811 None:intergenic
TACAAATGTTGCGTCTGCTA+TGG 0.534308 4_4:-3551047 Msa0664540:CDS
TCTCTTTCGGAGGTTGAGAG+TGG 0.534403 4_4:-3550878 Msa0664540:CDS
CACAAGGGTAGGCGGTGACA+TGG 0.536144 4_4:+3550676 None:intergenic
ATTGATAGGATTATTGATTG+GGG 0.538341 4_4:-3551634 Msa0664540:CDS
TACGGTATTGCAAGATGAGA+GGG 0.541044 4_4:-3547733 Msa0664540:CDS
GACGATCTTAAACGTGCCAC+TGG 0.541667 4_4:-3549889 Msa0664540:CDS
GAGGTCATCAGGCTGTGCAT+TGG 0.542020 4_4:+3550268 None:intergenic
ATGTGGCCTTTAGAACTATG+TGG 0.543399 4_4:-3549459 Msa0664540:CDS
ACATATGCTTCAGCATAGAC+AGG 0.550275 4_4:+3549796 None:intergenic
GGGTTTGTTCTTGTGCTCTG+TGG 0.551774 4_4:-3550922 Msa0664540:CDS
ACAGATCAAGGCCAACATCA+AGG 0.551932 4_4:-3549620 Msa0664540:CDS
TGAGCTCGAAGATGAGGTGC+AGG 0.552537 4_4:-3549911 Msa0664540:CDS
TGATAGGATTATTGATTGGG+GGG 0.552618 4_4:-3551632 Msa0664540:CDS
TGAGATAAGGAAGATATGGC+TGG 0.554553 4_4:-3550375 Msa0664540:CDS
CTCAAAAGTTGAAGTTAACA+AGG 0.559317 4_4:-3550531 Msa0664540:CDS
GTATAGGCAGATGTTGGTGC+AGG 0.560283 4_4:-3551146 Msa0664540:CDS
GGCCTGCGATTCTTGCCGAT+GGG 0.560801 4_4:-3550733 Msa0664540:CDS
ATGGTCTCAATGCTGCAGCT+TGG 0.561190 4_4:-3550485 Msa0664540:CDS
AGATATGGCTGGAATCCTGC+AGG 0.561257 4_4:-3550364 Msa0664540:CDS
ACAACAGTACTCGCCACCTC+CGG 0.567962 4_4:+3551097 None:intergenic
TTATCACTTGAAGAGCAGAA+AGG 0.572845 4_4:-3550237 Msa0664540:intron
TGAGTTTGAGTGGGAAAACA+AGG 0.573213 4_4:-3549434 Msa0664540:intron
GGAATAATAAGGGAGAGAAA+GGG 0.575016 4_4:-3551564 Msa0664540:CDS
TTCGGGTGATTTCTTCCTTG+GGG 0.575242 4_4:-3550609 Msa0664540:CDS
GAATCATTATCAATTGGATG+TGG 0.584531 4_4:+3550446 None:intergenic
GTATTGTTTGTCTCTTTCGG+AGG 0.585959 4_4:-3550888 Msa0664540:CDS
CACCATCTCTGAGGATGGAG+AGG 0.586391 4_4:-3550813 Msa0664540:CDS
TATTTGTAGACTTGATAATG+TGG 0.587171 4_4:+3547700 None:intergenic
CAAGATGAGAGGGAGTTCCT+GGG 0.587875 4_4:-3547723 Msa0664540:CDS
GTAATACTGGTGATGAGATA+AGG 0.591054 4_4:-3550388 Msa0664540:CDS
CCTCATCTTCGAGCTCAAGT+TGG 0.591377 4_4:+3549917 None:intergenic
CAGAATAAGAAGTAAAACCC+AGG 0.591954 4_4:-3547255 Msa0664540:CDS
GCAGCCGCTTTAATCGCGGT+CGG 0.602852 4_4:+3551448 None:intergenic
GCTGTTGTTTATGAATGTGC+TGG 0.603920 4_4:-3551496 Msa0664540:CDS
TGCACCGACCGCGATTAAAG+CGG 0.605018 4_4:-3551452 Msa0664540:CDS
AGCAGCACTCTGGGTAGCAT+AGG 0.605072 4_4:+3550709 None:intergenic
TGGGGAGTATAGGCAGATGT+TGG 0.605111 4_4:-3551152 Msa0664540:CDS
AAGACAGAGATCCCTGCACA+AGG 0.605670 4_4:+3550660 None:intergenic
GACCGAGGAGATTAAAGCAA+AGG 0.607890 4_4:-3550300 Msa0664540:CDS
TGTGGCCTTTAGAACTATGT+GGG 0.608107 4_4:-3549458 Msa0664540:CDS
TACACAGCAATCTAATGCAA+AGG 0.609288 4_4:+3550408 None:intergenic
AGACAGAGATCCCTGCACAA+GGG 0.610395 4_4:+3550661 None:intergenic
GAATATAACTCCAGTTTCAG+TGG 0.612897 4_4:+3549591 None:intergenic
ATAACCGCTCAATTTACCAT+CGG 0.613015 4_4:+3547280 None:intergenic
TCACCGCCTACCCTTGTGCA+GGG 0.613107 4_4:-3550671 Msa0664540:CDS
AGAGATCCCTGCACAAGGGT+AGG 0.614667 4_4:+3550665 None:intergenic
CCAACTTGAGCTCGAAGATG+AGG 0.614861 4_4:-3549917 Msa0664540:CDS
AGAATAAGAAGTAAAACCCA+GGG 0.615034 4_4:-3547254 Msa0664540:CDS
TTGATAGGATTATTGATTGG+GGG 0.615618 4_4:-3551633 Msa0664540:CDS
AAAATCACTTTGAAGCAGAA+GGG 0.616042 4_4:-3547209 Msa0664540:CDS
TAGGAGTCGAAAGTGCCCTA+AGG 0.616121 4_4:+3551302 None:intergenic
TAAGCAGCGCCGTGAGACCG+AGG 0.616463 4_4:-3550315 Msa0664540:CDS
TCTGCATTGGAAGGTGAGTG+TGG 0.618873 4_4:-3547380 Msa0664540:CDS
TCGACTTAACGAGCTTAAGA+GGG 0.619301 4_4:-3551362 Msa0664540:CDS
AAGACTCAGAGCAATTCCCT+GGG 0.620234 4_4:+3547238 None:intergenic
ATACGGTATTGCAAGATGAG+AGG 0.623355 4_4:-3547734 Msa0664540:CDS
CTATGTGGGCTGAGTTTGAG+TGG 0.625334 4_4:-3549444 Msa0664540:CDS
TGCGTGTTTCTATCATCACT+AGG 0.626366 4_4:-3550979 Msa0664540:CDS
CTGGGTAGCATAGGTCCCAT+CGG 0.628553 4_4:+3550718 None:intergenic
TGTTGCGTCTGCTATGGATG+TGG 0.631879 4_4:-3551041 Msa0664540:CDS
GGTTGTTAAGACGCAGAGCG+GGG 0.634964 4_4:-3551188 Msa0664540:CDS
ATCCTTTGTAAACTCTCCAG+TGG 0.635004 4_4:+3549873 None:intergenic
GGGAATTGCTCTGAGTCTTG+GGG 0.635580 4_4:-3547234 Msa0664540:CDS
ATTCGCAGCCGCTTTAATCG+CGG 0.638162 4_4:+3551444 None:intergenic
GGTTGATGACAGTAACATCA+AGG 0.643491 4_4:+3549749 None:intergenic
ACCATCTCTGAGGATGGAGA+GGG 0.647823 4_4:-3550812 Msa0664540:CDS
AGAGGGTCAGGAGACATCAA+AGG 0.653712 4_4:-3550795 Msa0664540:CDS
TTGTGCTATTAAGTTTCCGG+AGG 0.654288 4_4:-3551113 Msa0664540:CDS
AGCATTGAGAAGCAATCCGA+TGG 0.659389 4_4:-3547296 Msa0664540:CDS
TACTGTCATCAACCGGACCA+AGG 0.661558 4_4:-3549740 Msa0664540:CDS
CGGGGAGCATGAGAAGAATG+GGG 0.661763 4_4:-3551170 Msa0664540:CDS
CGACCACTGTGTCTTCTAGG+AGG 0.662950 4_4:-3550754 Msa0664540:CDS
GATCCCTGCACAAGGGTAGG+CGG 0.664720 4_4:+3550668 None:intergenic
CATTGAGACCATGATCAACA+AGG 0.665953 4_4:+3550496 None:intergenic
GCGTCCACAAAACTACACTC+TGG 0.667477 4_4:-3549659 Msa0664540:CDS
TGATAATGATTCTCATGACA+GGG 0.668331 4_4:-3550435 Msa0664540:CDS
TACATGCGACAACTGCCCCA+AGG 0.668408 4_4:+3550594 None:intergenic
CAATCCGATGGTAAATTGAG+CGG 0.668476 4_4:-3547284 Msa0664540:CDS
GAGGTTGTTAAGACGCAGAG+CGG 0.671714 4_4:-3551190 Msa0664540:CDS
TCAAGTGATAAAAGTCGATG+AGG 0.671720 4_4:+3550249 None:intergenic
TATGTGGGCTGAGTTTGAGT+GGG 0.690862 4_4:-3549443 Msa0664540:CDS
GAGCTTTGTGAAGATGCTCG+CGG 0.718610 4_4:-3550339 Msa0664540:CDS
TGCCACTGGAGAGTTTACAA+AGG 0.721810 4_4:-3549875 Msa0664540:CDS
AGCACATTCATAAACAACAG+CGG 0.738106 4_4:+3551498 None:intergenic
AGGCCTCCTAGAAGACACAG+TGG 0.786866 4_4:+3550751 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTAAAATGGAAAAAT+GGG + chr4_4:3549608-3549627 None:intergenic 10.0%
!! ATAAAAGTTGAAAAAGATTA+TGG - chr4_4:3549548-3549567 Msa0664540:CDS 15.0%
!!! ATTTTTAAAATGGAAAAATG+GGG + chr4_4:3549607-3549626 None:intergenic 15.0%
!!! CAATTTTTAAAATGGAAAAA+TGG + chr4_4:3549609-3549628 None:intergenic 15.0%
!!! TTTTCATGCAATTTTTAAAA+TGG + chr4_4:3549617-3549636 None:intergenic 15.0%
!!! GTATTAATAATTTTTTTTCG+TGG - chr4_4:3549838-3549857 Msa0664540:CDS 15.0%
!! TAGGATAAATCATATATATA+GGG + chr4_4:3550127-3550146 None:intergenic 15.0%
!! TTAGGATAAATCATATATAT+AGG + chr4_4:3550128-3550147 None:intergenic 15.0%
!!! ATAATTTTATGTTGTTAATG+CGG + chr4_4:3550545-3550564 None:intergenic 15.0%
!!! ATTATTTTCTAAGACAAATT+TGG - chr4_4:3550560-3550579 Msa0664540:CDS 15.0%
!!! TTATTTTCTAAGACAAATTT+GGG - chr4_4:3550561-3550580 Msa0664540:CDS 15.0%
!! TCCTAAATAAAACAAAAAAT+AGG - chr4_4:3550639-3550658 Msa0664540:CDS 15.0%
!!! TCCTATTTTTTGTTTTATTT+AGG + chr4_4:3550643-3550662 None:intergenic 15.0%
!!! ATCTTTTTACGAATATTGAT+AGG - chr4_4:3547264-3547283 Msa0664540:CDS 20.0%
!! ATATTGATAGGATTATTGAT+TGG - chr4_4:3547276-3547295 Msa0664540:CDS 20.0%
!!! TATTGATAGGATTATTGATT+GGG - chr4_4:3547277-3547296 Msa0664540:CDS 20.0%
!! AATTGATTAAGAAAGTTTGT+AGG - chr4_4:3547327-3547346 Msa0664540:CDS 20.0%
!! AAAGTTTGTAGGAATAATAA+GGG - chr4_4:3547338-3547357 Msa0664540:CDS 20.0%
!! AAAATATAACAAATGAGAGA+AGG + chr4_4:3549518-3549537 None:intergenic 20.0%
!!! TATTTTCTAAGACAAATTTG+GGG - chr4_4:3550562-3550581 Msa0664540:CDS 20.0%
!!! TAACATCAATTTTATGTCAT+AGG - chr4_4:3551146-3551165 Msa0664540:CDS 20.0%
!! TAAAAAGAAAAACAGAATTC+TGG + chr4_4:3551324-3551343 None:intergenic 20.0%
!!! GAATTCTGTTTTTCTTTTTA+AGG - chr4_4:3551324-3551343 Msa0664540:CDS 20.0%
!! ATTGATAGGATTATTGATTG+GGG - chr4_4:3547278-3547297 Msa0664540:CDS 25.0%
! GAAAGTTTGTAGGAATAATA+AGG - chr4_4:3547337-3547356 Msa0664540:CDS 25.0%
! TTCCTTCTAATATCATGATT+AGG + chr4_4:3547632-3547651 None:intergenic 25.0%
! TCATGAGAATCATTATCAAT+TGG + chr4_4:3548475-3548494 None:intergenic 25.0%
!!! TTTGCTTCTTTTTCTAAGAA+TGG - chr4_4:3548716-3548735 Msa0664540:intron 25.0%
! TGACATTCATATTGATATCA+TGG - chr4_4:3549403-3549422 Msa0664540:intron 25.0%
! TACTTTAGATTCATGATTCA+TGG - chr4_4:3549649-3549668 Msa0664540:CDS 25.0%
! TTCATGGTAATCTCTATTAT+TGG - chr4_4:3549665-3549684 Msa0664540:CDS 25.0%
! TCATGGTAATCTCTATTATT+GGG - chr4_4:3549666-3549685 Msa0664540:CDS 25.0%
!! AATATAACTTTAAGAGCACA+GGG + chr4_4:3549700-3549719 None:intergenic 25.0%
! TCATATTGAACTATTGAAGT+TGG - chr4_4:3549808-3549827 Msa0664540:CDS 25.0%
!! ATCATCTTACAATTTTACCA+AGG + chr4_4:3549928-3549947 None:intergenic 25.0%
! TGTAATAACTACATGAATGA+TGG - chr4_4:3550688-3550707 Msa0664540:CDS 25.0%
!!! CTCTAATTTTTTTTGCATGA+AGG - chr4_4:3550758-3550777 Msa0664540:CDS 25.0%
!!! TATTTGTAGACTTGATAATG+TGG + chr4_4:3551215-3551234 None:intergenic 25.0%
! ATAAGGTTTACGCAAATTAA+AGG + chr4_4:3551264-3551283 None:intergenic 25.0%
! CCAAATTAAACAAATTGCAT+GGG + chr4_4:3551465-3551484 None:intergenic 25.0%
! ACCAAATTAAACAAATTGCA+TGG + chr4_4:3551466-3551485 None:intergenic 25.0%
! CCAAATTAAACAAATTGCAT+GGG + chr4_4:3551465-3551484 None:intergenic 25.0%
! ACCAAATTAAACAAATTGCA+TGG + chr4_4:3551466-3551485 None:intergenic 25.0%
! TTGATAGGATTATTGATTGG+GGG - chr4_4:3547279-3547298 Msa0664540:CDS 30.0%
! GATTATGGTTGATATGGTTA+TGG - chr4_4:3547583-3547602 Msa0664540:intron 30.0%
CTCCTAATCATGATATTAGA+AGG - chr4_4:3547627-3547646 Msa0664540:intron 30.0%
TACACCTAAGAATATTGATC+AGG - chr4_4:3547679-3547698 Msa0664540:intron 30.0%
ACAACCTGATCAATATTCTT+AGG + chr4_4:3547686-3547705 None:intergenic 30.0%
! TACTTGTGCTATTAAGTTTC+CGG - chr4_4:3547796-3547815 Msa0664540:intron 30.0%
!! CATTTGTTGATGGATTTCTT+GGG - chr4_4:3547839-3547858 Msa0664540:intron 30.0%
TGGATACTTTCTATCAGATT+CGG - chr4_4:3547960-3547979 Msa0664540:intron 30.0%
! TGAGTATTGTTTGTCTCTTT+CGG - chr4_4:3548021-3548040 Msa0664540:intron 30.0%
! CTTGTTAACTTCAACTTTTG+AGG + chr4_4:3548383-3548402 None:intergenic 30.0%
CTCAAAAGTTGAAGTTAACA+AGG - chr4_4:3548381-3548400 Msa0664540:intron 30.0%
GAATCATTATCAATTGGATG+TGG + chr4_4:3548469-3548488 None:intergenic 30.0%
!! TTGATAATGATTCTCATGAC+AGG - chr4_4:3548476-3548495 Msa0664540:intron 30.0%
! TGATAATGATTCTCATGACA+GGG - chr4_4:3548477-3548496 Msa0664540:intron 30.0%
ATTAGATTGCTGTGTAATAC+TGG - chr4_4:3548511-3548530 Msa0664540:intron 30.0%
CATGCAAAACAAAAACTTCA+AGG + chr4_4:3548770-3548789 None:intergenic 30.0%
! AAGTTTAGTGTTTTGTCAGT+TGG - chr4_4:3548876-3548895 Msa0664540:intron 30.0%
! AGTTTAGTGTTTTGTCAGTT+GGG - chr4_4:3548877-3548896 Msa0664540:intron 30.0%
AACTCTCCAGAATTTATGTT+TGG - chr4_4:3549196-3549215 Msa0664540:intron 30.0%
CTAACTCCAAACATAAATTC+TGG + chr4_4:3549205-3549224 None:intergenic 30.0%
ACTGAAACTGGAGTTATATT+CGG - chr4_4:3549323-3549342 Msa0664540:intron 30.0%
ATATAACAAATGAGAGAAGG+AGG + chr4_4:3549515-3549534 None:intergenic 30.0%
TTGCATGAAAAACAACTTCT+AGG - chr4_4:3549626-3549645 Msa0664540:CDS 30.0%
! ATATAACTTTAAGAGCACAG+GGG + chr4_4:3549699-3549718 None:intergenic 30.0%
! CAATATAACTTTAAGAGCAC+AGG + chr4_4:3549701-3549720 None:intergenic 30.0%
! CTTCGATGATGGTATATTAA+TGG - chr4_4:3549760-3549779 Msa0664540:CDS 30.0%
! GATGATGGTATATTAATGGT+TGG - chr4_4:3549764-3549783 Msa0664540:CDS 30.0%
! ATCTTACAATTTTACCAAGG+TGG + chr4_4:3549925-3549944 None:intergenic 30.0%
CAGCTTATACATATACCATT+AGG + chr4_4:3549995-3550014 None:intergenic 30.0%
!!! GATTCAGCATGTTACTTTTT+GGG + chr4_4:3550056-3550075 None:intergenic 30.0%
!!! AGATTCAGCATGTTACTTTT+TGG + chr4_4:3550057-3550076 None:intergenic 30.0%
CATTATTGTTATCGTCTCTT+AGG + chr4_4:3550146-3550165 None:intergenic 30.0%
AAGAGACGATAACAATAATG+AGG - chr4_4:3550146-3550165 Msa0664540:intron 30.0%
! TTTATACACTGATGCTTTTC+TGG - chr4_4:3550427-3550446 Msa0664540:CDS 30.0%
ACTGTTTCAATGACTCAATT+TGG - chr4_4:3550807-3550826 Msa0664540:CDS 30.0%
! AGCTGTGATTCATTCATTTT+TGG + chr4_4:3550900-3550919 None:intergenic 30.0%
! ATTTTTGTAGTTTCCTGCTT+AGG - chr4_4:3550945-3550964 Msa0664540:CDS 30.0%
! TTTTTGTAGTTTCCTGCTTA+GGG - chr4_4:3550946-3550965 Msa0664540:CDS 30.0%
GAGTAAACTGATTATAGCTA+AGG + chr4_4:3550972-3550991 None:intergenic 30.0%
AATGTATGTAGTTGTAGTAC+AGG - chr4_4:3551019-3551038 Msa0664540:CDS 30.0%
TTATGGGTACTTCATTGTTT+AGG + chr4_4:3551377-3551396 None:intergenic 30.0%
! CCCATGCAATTTGTTTAATT+TGG - chr4_4:3551462-3551481 Msa0664540:CDS 30.0%
! CCCATGCAATTTGTTTAATT+TGG - chr4_4:3551462-3551481 Msa0664540:CDS 30.0%
!!! TGTATGCAAAGAGTGTTTTT+GGG - chr4_4:3551572-3551591 Msa0664540:CDS 30.0%
AGAATAAGAAGTAAAACCCA+GGG - chr4_4:3551658-3551677 Msa0664540:CDS 30.0%
!! TAAAATCACTTTGAAGCAGA+AGG - chr4_4:3551702-3551721 Msa0664540:exon 30.0%
!! AAAATCACTTTGAAGCAGAA+GGG - chr4_4:3551703-3551722 Msa0664540:exon 30.0%
! TGATAGGATTATTGATTGGG+GGG - chr4_4:3547280-3547299 Msa0664540:CDS 35.0%
! ACAGTTACAAATGGTGGTTT+TGG - chr4_4:3547304-3547323 Msa0664540:CDS 35.0%
AGGAATAATAAGGGAGAGAA+AGG - chr4_4:3547347-3547366 Msa0664540:CDS 35.0%
GGAATAATAAGGGAGAGAAA+GGG - chr4_4:3547348-3547367 Msa0664540:CDS 35.0%
AGCACATTCATAAACAACAG+CGG + chr4_4:3547417-3547436 None:intergenic 35.0%
! TAGGGAGATTATGGTTGATA+TGG - chr4_4:3547577-3547596 Msa0664540:intron 35.0%
ATATGGTTATGGATGTCCTT+AGG - chr4_4:3547594-3547613 Msa0664540:intron 35.0%
TATGGTTATGGATGTCCTTA+GGG - chr4_4:3547595-3547614 Msa0664540:intron 35.0%
GGTTGTTATGATGCTTAAGA+AGG - chr4_4:3547700-3547719 Msa0664540:CDS 35.0%
TGTTATGATGCTTAAGAAGG+AGG - chr4_4:3547703-3547722 Msa0664540:CDS 35.0%
! TACTGTTGTGCATTTGTTGA+TGG - chr4_4:3547829-3547848 Msa0664540:intron 35.0%
!! GCATTTGTTGATGGATTTCT+TGG - chr4_4:3547838-3547857 Msa0664540:intron 35.0%
! TTCTATCATCACTAGGCTTT+TGG - chr4_4:3547940-3547959 Msa0664540:intron 35.0%
GGATACTTTCTATCAGATTC+GGG - chr4_4:3547961-3547980 Msa0664540:intron 35.0%
CTTGAGATCTCTGATTCTTT+CGG - chr4_4:3548285-3548304 Msa0664540:intron 35.0%
TTGAGATCTCTGATTCTTTC+GGG - chr4_4:3548286-3548305 Msa0664540:intron 35.0%
CACTGACAAAGCTTATCTTA+AGG - chr4_4:3548341-3548360 Msa0664540:intron 35.0%
GACAAAGCTTATCTTAAGGT+TGG - chr4_4:3548345-3548364 Msa0664540:intron 35.0%
TACACAGCAATCTAATGCAA+AGG + chr4_4:3548507-3548526 None:intergenic 35.0%
! GTAATACTGGTGATGAGATA+AGG - chr4_4:3548524-3548543 Msa0664540:intron 35.0%
GTGATGAGATAAGGAAGATA+TGG - chr4_4:3548533-3548552 Msa0664540:intron 35.0%
TCAAGTGATAAAAGTCGATG+AGG + chr4_4:3548666-3548685 None:intergenic 35.0%
TTATCACTTGAAGAGCAGAA+AGG - chr4_4:3548675-3548694 Msa0664540:intron 35.0%
! TACCTATATTTGTCGAGTTG+TGG - chr4_4:3548831-3548850 Msa0664540:intron 35.0%
TACCACAACTCGACAAATAT+AGG + chr4_4:3548836-3548855 None:intergenic 35.0%
! GTTTAGTGTTTTGTCAGTTG+GGG - chr4_4:3548878-3548897 Msa0664540:intron 35.0%
! TTTAGTGTTTTGTCAGTTGG+GGG - chr4_4:3548879-3548898 Msa0664540:intron 35.0%
TAAGTGTACTGAGCACATAA+CGG + chr4_4:3548921-3548940 None:intergenic 35.0%
! TCAATCTGTCTATGCTTTTC+AGG - chr4_4:3548965-3548984 Msa0664540:intron 35.0%
! CAATCTGTCTATGCTTTTCA+GGG - chr4_4:3548966-3548985 Msa0664540:intron 35.0%
TTGATGTTACTGTCATCAAC+CGG - chr4_4:3549165-3549184 Msa0664540:intron 35.0%
! TAAATTCTGGAGAGTTTCCT+TGG + chr4_4:3549192-3549211 None:intergenic 35.0%
! ATGTTTGGAGTTAGCAACTA+TGG - chr4_4:3549211-3549230 Msa0664540:intron 35.0%
! TGTTTGGAGTTAGCAACTAT+GGG - chr4_4:3549212-3549231 Msa0664540:intron 35.0%
TTGATCTGTTTGCTTGATTC+TGG + chr4_4:3549281-3549300 None:intergenic 35.0%
AGAATCAAGCAAACAGATCA+AGG - chr4_4:3549280-3549299 Msa0664540:intron 35.0%
GAATATAACTCCAGTTTCAG+TGG + chr4_4:3549324-3549343 None:intergenic 35.0%
GGATCGAAATAAGCAGTAAA+AGG + chr4_4:3549579-3549598 None:intergenic 35.0%
! TATAACTTTAAGAGCACAGG+GGG + chr4_4:3549698-3549717 None:intergenic 35.0%
TGCAATATATGCTTCGATGA+TGG - chr4_4:3549749-3549768 Msa0664540:CDS 35.0%
ATACCATTAGGCTACTACTA+GGG + chr4_4:3549983-3550002 None:intergenic 35.0%
TATACCATTAGGCTACTACT+AGG + chr4_4:3549984-3550003 None:intergenic 35.0%
TGTTTGCATTTCACTGAGTT+AGG - chr4_4:3550241-3550260 Msa0664540:CDS 35.0%
GAGTGATATGCTGATAGATA+TGG - chr4_4:3550387-3550406 Msa0664540:CDS 35.0%
ACTTCATGTGAACTCATTAG+AGG + chr4_4:3550727-3550746 None:intergenic 35.0%
GCATGAAGGAAGCTATAAAT+AGG - chr4_4:3550772-3550791 Msa0664540:CDS 35.0%
ATGTAGTTGTAGTACAGGTA+TGG - chr4_4:3551024-3551043 Msa0664540:CDS 35.0%
ACAATCATGCTTCTAGATGA+TGG + chr4_4:3551061-3551080 None:intergenic 35.0%
GTCATAGGTTGCTGTAAATA+CGG - chr4_4:3551161-3551180 Msa0664540:CDS 35.0%
ACGCAAATTAAAGGAACTCA+CGG + chr4_4:3551255-3551274 None:intergenic 35.0%
ACGCAACAATAACAGTCATA+AGG + chr4_4:3551281-3551300 None:intergenic 35.0%
AATTCTGGTAGTAGATAGTC+AGG + chr4_4:3551309-3551328 None:intergenic 35.0%
AAGTACCCATAACTGATTGT+GGG - chr4_4:3551385-3551404 Msa0664540:CDS 35.0%
TGAATCCCACAATCAGTTAT+GGG + chr4_4:3551393-3551412 None:intergenic 35.0%
ATGAATCCCACAATCAGTTA+TGG + chr4_4:3551394-3551413 None:intergenic 35.0%
! TTGCTGTGCTTGATTTGATT+TGG - chr4_4:3551437-3551456 Msa0664540:CDS 35.0%
!!! CTGTATGCAAAGAGTGTTTT+TGG - chr4_4:3551571-3551590 Msa0664540:CDS 35.0%
!!! GTATGCAAAGAGTGTTTTTG+GGG - chr4_4:3551573-3551592 Msa0664540:CDS 35.0%
ATAACCGCTCAATTTACCAT+CGG + chr4_4:3551635-3551654 None:intergenic 35.0%
CAGAATAAGAAGTAAAACCC+AGG - chr4_4:3551657-3551676 Msa0664540:CDS 35.0%
! GCTGTTGTTTATGAATGTGC+TGG - chr4_4:3547416-3547435 Msa0664540:intron 40.0%
! ATCGACTTAACGAGCTTAAG+AGG - chr4_4:3547549-3547568 Msa0664540:intron 40.0%
TCGACTTAACGAGCTTAAGA+GGG - chr4_4:3547550-3547569 Msa0664540:intron 40.0%
ACGAGCTTAAGAGGGATAAT+AGG - chr4_4:3547558-3547577 Msa0664540:intron 40.0%
CGAGCTTAAGAGGGATAATA+GGG - chr4_4:3547559-3547578 Msa0664540:intron 40.0%
GAGGGATAATAGGGAGATTA+TGG - chr4_4:3547568-3547587 Msa0664540:intron 40.0%
! ATGAGAAGAATGGGGAGTAT+AGG - chr4_4:3547750-3547769 Msa0664540:intron 40.0%
! TTGTGCTATTAAGTTTCCGG+AGG - chr4_4:3547799-3547818 Msa0664540:intron 40.0%
TACAAATGTTGCGTCTGCTA+TGG - chr4_4:3547865-3547884 Msa0664540:intron 40.0%
TGATAGAAACACGCAGCTTA+GGG + chr4_4:3547928-3547947 None:intergenic 40.0%
ATGATAGAAACACGCAGCTT+AGG + chr4_4:3547929-3547948 None:intergenic 40.0%
! TGCGTGTTTCTATCATCACT+AGG - chr4_4:3547933-3547952 Msa0664540:intron 40.0%
! TCTTGTGCTCTGTGGATTAT+TGG - chr4_4:3547998-3548017 Msa0664540:intron 40.0%
GTATTGTTTGTCTCTTTCGG+AGG - chr4_4:3548024-3548043 Msa0664540:intron 40.0%
GCAACTATTAAGCAGTGTCT+TGG - chr4_4:3548061-3548080 Msa0664540:intron 40.0%
TCCTCAGAGATGGTGTAAAA+GGG + chr4_4:3548094-3548113 None:intergenic 40.0%
ATCCTCAGAGATGGTGTAAA+AGG + chr4_4:3548095-3548114 None:intergenic 40.0%
!! TTTTACACCATCTCTGAGGA+TGG - chr4_4:3548094-3548113 Msa0664540:intron 40.0%
AGGGATCTCTGTCTTCTATT+GGG - chr4_4:3548260-3548279 Msa0664540:intron 40.0%
! TTTCGGGTGATTTCTTCCTT+GGG - chr4_4:3548302-3548321 Msa0664540:intron 40.0%
GCTTATCTTAAGGTTGGAAG+AGG - chr4_4:3548351-3548370 Msa0664540:intron 40.0%
TTCACAGTCCTTGTTGATCA+TGG - chr4_4:3548408-3548427 Msa0664540:intron 40.0%
CATTGAGACCATGATCAACA+AGG + chr4_4:3548419-3548438 None:intergenic 40.0%
TGAGATAAGGAAGATATGGC+TGG - chr4_4:3548537-3548556 Msa0664540:intron 40.0%
TGCCTTTGCTTTAATCTCCT+CGG + chr4_4:3548617-3548636 None:intergenic 40.0%
TAAAAGTCGATGAGGTCATC+AGG + chr4_4:3548658-3548677 None:intergenic 40.0%
! TGAAGAGCAGAAAGGTATGA+TGG - chr4_4:3548683-3548702 Msa0664540:intron 40.0%
ATCCTTTGTAAACTCTCCAG+TGG + chr4_4:3549042-3549061 None:intergenic 40.0%
ACATATGCTTCAGCATAGAC+AGG + chr4_4:3549119-3549138 None:intergenic 40.0%
!! GGTTGATGACAGTAACATCA+AGG + chr4_4:3549166-3549185 None:intergenic 40.0%
AGTGGAAGAAACCTTGATGT+TGG + chr4_4:3549306-3549325 None:intergenic 40.0%
AAGGTTTCTTCCACTGAAAC+TGG - chr4_4:3549311-3549330 Msa0664540:intron 40.0%
!! ATGTGGCCTTTAGAACTATG+TGG - chr4_4:3549453-3549472 Msa0664540:CDS 40.0%
!! TGTGGCCTTTAGAACTATGT+GGG - chr4_4:3549454-3549473 Msa0664540:CDS 40.0%
TGAGTTTGAGTGGGAAAACA+AGG - chr4_4:3549478-3549497 Msa0664540:CDS 40.0%
TTACTGCTTATTTCGATCCC+TGG - chr4_4:3549580-3549599 Msa0664540:CDS 40.0%
TACTGCTTATTTCGATCCCT+GGG - chr4_4:3549581-3549600 Msa0664540:CDS 40.0%
ATTGCAAACAGAACGATGTC+AGG + chr4_4:3549735-3549754 None:intergenic 40.0%
TACCATTAGGCTACTACTAG+GGG + chr4_4:3549982-3550001 None:intergenic 40.0%
!!! TACTTTTTGGGTGCAATGAC+AGG + chr4_4:3550044-3550063 None:intergenic 40.0%
ATAGGGAACACACAACACAA+AGG + chr4_4:3550110-3550129 None:intergenic 40.0%
AAATAGAGACGTAGAGGAGT+AGG + chr4_4:3550191-3550210 None:intergenic 40.0%
TACTCCTCTACGTCTCTATT+TGG - chr4_4:3550190-3550209 Msa0664540:intron 40.0%
ACTCCTCTACGTCTCTATTT+GGG - chr4_4:3550191-3550210 Msa0664540:intron 40.0%
TGCCTGTAGCTATTCAAAGT+GGG + chr4_4:3550345-3550364 None:intergenic 40.0%
ATGCCTGTAGCTATTCAAAG+TGG + chr4_4:3550346-3550365 None:intergenic 40.0%
CAGCATATCACTCATACTGT+GGG + chr4_4:3550380-3550399 None:intergenic 40.0%
TCAGCATATCACTCATACTG+TGG + chr4_4:3550381-3550400 None:intergenic 40.0%
! TGAATGATGGAAATCACCCT+AGG - chr4_4:3550701-3550720 Msa0664540:CDS 40.0%
GAAGGAAGCTATAAATAGGC+AGG - chr4_4:3550776-3550795 Msa0664540:CDS 40.0%
TCAATTTGGTCCTGTCTTGA+TGG - chr4_4:3550821-3550840 Msa0664540:CDS 40.0%
CAATTTGGTCCTGTCTTGAT+GGG - chr4_4:3550822-3550841 Msa0664540:CDS 40.0%
! GATTCTGAGAAAGCTACAGA+TGG + chr4_4:3550860-3550879 None:intergenic 40.0%
! CTTCTAGATGATGGCCAATT+TGG + chr4_4:3551052-3551071 None:intergenic 40.0%
! TCTAGAAGCATGATTGTGAC+AGG - chr4_4:3551064-3551083 Msa0664540:CDS 40.0%
! CTAGAAGCATGATTGTGACA+GGG - chr4_4:3551065-3551084 Msa0664540:CDS 40.0%
ATACGGTATTGCAAGATGAG+AGG - chr4_4:3551178-3551197 Msa0664540:CDS 40.0%
TACGGTATTGCAAGATGAGA+GGG - chr4_4:3551179-3551198 Msa0664540:CDS 40.0%
CAAATTAAAGGAACTCACGG+TGG + chr4_4:3551252-3551271 None:intergenic 40.0%
! GAAGTACCCATAACTGATTG+TGG - chr4_4:3551384-3551403 Msa0664540:CDS 40.0%
CAATCCGATGGTAAATTGAG+CGG - chr4_4:3551628-3551647 Msa0664540:CDS 40.0%
AGCAAGATGCTTCGAGTAAG+AGG - chr4_4:3547192-3547211 Msa0664540:exon 45.0%
TTGGGGGGAACAGTTACAAA+TGG - chr4_4:3547295-3547314 Msa0664540:CDS 45.0%
TGCTATTAAGTTTCCGGAGG+TGG - chr4_4:3547802-3547821 Msa0664540:intron 45.0%
!! TGGATGTGGTTGTTTTCGTG+CGG - chr4_4:3547885-3547904 Msa0664540:intron 45.0%
! TCCCTTTTACACCATCTCTG+AGG - chr4_4:3548090-3548109 Msa0664540:intron 45.0%
CAGGGATCTCTGTCTTCTAT+TGG - chr4_4:3548259-3548278 Msa0664540:intron 45.0%
! CTTTCGGGTGATTTCTTCCT+TGG - chr4_4:3548301-3548320 Msa0664540:intron 45.0%
TTCGGGTGATTTCTTCCTTG+GGG - chr4_4:3548303-3548322 Msa0664540:intron 45.0%
CTTTAATCTCCTCGGTCTCA+CGG + chr4_4:3548609-3548628 None:intergenic 45.0%
GACCGAGGAGATTAAAGCAA+AGG - chr4_4:3548612-3548631 Msa0664540:intron 45.0%
GCTCAGTACACTTACTCATC+TGG - chr4_4:3548927-3548946 Msa0664540:intron 45.0%
TGCCACTGGAGAGTTTACAA+AGG - chr4_4:3549037-3549056 Msa0664540:intron 45.0%
AATCGCATTCTTCAGCTCAC+TGG - chr4_4:3549083-3549102 Msa0664540:intron 45.0%
ATCGCATTCTTCAGCTCACT+GGG - chr4_4:3549084-3549103 Msa0664540:intron 45.0%
ACAGATCAAGGCCAACATCA+AGG - chr4_4:3549292-3549311 Msa0664540:intron 45.0%
!! CTCAGCCCACATAGTTCTAA+AGG + chr4_4:3549462-3549481 None:intergenic 45.0%
! TATGTGGGCTGAGTTTGAGT+GGG - chr4_4:3549469-3549488 Msa0664540:CDS 45.0%
ACAAATGAGAGAAGGAGGAG+AGG + chr4_4:3549510-3549529 None:intergenic 45.0%
AAATGGAAAAATGGGGCCCA+GGG + chr4_4:3549600-3549619 None:intergenic 45.0%
AAAATGGAAAAATGGGGCCC+AGG + chr4_4:3549601-3549620 None:intergenic 45.0%
! GAAAGTACGCGTACAGAAGT+TGG + chr4_4:3549903-3549922 None:intergenic 45.0%
ACACCCAAATAGAGACGTAG+AGG + chr4_4:3550197-3550216 None:intergenic 45.0%
CGTCTCTATTTGGGTGTGAA+AGG - chr4_4:3550200-3550219 Msa0664540:intron 45.0%
CTATTTGGGTGTGAAAGGAG+AGG - chr4_4:3550205-3550224 Msa0664540:intron 45.0%
GTGAAAGGAGAGGTAGATCT+CGG - chr4_4:3550215-3550234 Msa0664540:intron 45.0%
TAATGTGTGATGCTGCTGTC+TGG - chr4_4:3550312-3550331 Msa0664540:CDS 45.0%
AATGTGTGATGCTGCTGTCT+GGG - chr4_4:3550313-3550332 Msa0664540:CDS 45.0%
TGCCCACTTTGAATAGCTAC+AGG - chr4_4:3550340-3550359 Msa0664540:CDS 45.0%
!! ACACTGATGCTTTTCTGGCA+AGG - chr4_4:3550432-3550451 Msa0664540:CDS 45.0%
GTGAACTCATTAGAGGCCTA+GGG + chr4_4:3550720-3550739 None:intergenic 45.0%
TGTGAACTCATTAGAGGCCT+AGG + chr4_4:3550721-3550740 None:intergenic 45.0%
TTTCCCAATCCCATCAAGAC+AGG + chr4_4:3550834-3550853 None:intergenic 45.0%
TTATAGCTAAGGCCCTAAGC+AGG + chr4_4:3550961-3550980 None:intergenic 45.0%
! GTACAGGTATGGTGCCAAAT+TGG - chr4_4:3551035-3551054 Msa0664540:CDS 45.0%
!! TAGACTTGATAATGTGGCCC+AGG + chr4_4:3551209-3551228 None:intergenic 45.0%
TGGTAGTAGATAGTCAGGCA+CGG + chr4_4:3551304-3551323 None:intergenic 45.0%
TCTCTTGTTCAGCTCTGCAT+TGG - chr4_4:3551519-3551538 Msa0664540:CDS 45.0%
TTGTTCAGCTCTGCATTGGA+AGG - chr4_4:3551523-3551542 Msa0664540:CDS 45.0%
!!! TGTTTTTGGGGAAGATGCTC+TGG - chr4_4:3551585-3551604 Msa0664540:CDS 45.0%
! AGCATTGAGAAGCAATCCGA+TGG - chr4_4:3551616-3551635 Msa0664540:CDS 45.0%
AAGACTCAGAGCAATTCCCT+GGG + chr4_4:3551677-3551696 None:intergenic 45.0%
! AGGGAATTGCTCTGAGTCTT+GGG - chr4_4:3551677-3551696 Msa0664540:CDS 45.0%
GGGGGAACAGTTACAAATGG+TGG - chr4_4:3547298-3547317 Msa0664540:CDS 50.0%
! ATTCGCAGCCGCTTTAATCG+CGG + chr4_4:3547471-3547490 None:intergenic 50.0%
!! TAGGAGTCGAAAGTGCCCTA+AGG + chr4_4:3547613-3547632 None:intergenic 50.0%
GAGGTTGTTAAGACGCAGAG+CGG - chr4_4:3547722-3547741 Msa0664540:CDS 50.0%
AGGTTGTTAAGACGCAGAGC+GGG - chr4_4:3547723-3547742 Msa0664540:CDS 50.0%
! TGGGGAGTATAGGCAGATGT+TGG - chr4_4:3547760-3547779 Msa0664540:intron 50.0%
GTATAGGCAGATGTTGGTGC+AGG - chr4_4:3547766-3547785 Msa0664540:intron 50.0%
TGTTGCGTCTGCTATGGATG+TGG - chr4_4:3547871-3547890 Msa0664540:intron 50.0%
!! GGATGTGGTTGTTTTCGTGC+GGG - chr4_4:3547886-3547905 Msa0664540:intron 50.0%
TCTATCAGATTCGGGCTGCT+AGG - chr4_4:3547969-3547988 Msa0664540:intron 50.0%
CTATCAGATTCGGGCTGCTA+GGG - chr4_4:3547970-3547989 Msa0664540:intron 50.0%
! GGGTTTGTTCTTGTGCTCTG+TGG - chr4_4:3547990-3548009 Msa0664540:intron 50.0%
TCTCTTTCGGAGGTTGAGAG+TGG - chr4_4:3548034-3548053 Msa0664540:intron 50.0%
! ACCATCTCTGAGGATGGAGA+GGG - chr4_4:3548100-3548119 Msa0664540:intron 50.0%
AGAGGGTCAGGAGACATCAA+AGG - chr4_4:3548117-3548136 Msa0664540:intron 50.0%
ACTCGACCACTGTGTCTTCT+AGG - chr4_4:3548155-3548174 Msa0664540:intron 50.0%
AGTCTCATGAGCAGCACTCT+GGG + chr4_4:3548215-3548234 None:intergenic 50.0%
AGACAGAGATCCCTGCACAA+GGG + chr4_4:3548254-3548273 None:intergenic 50.0%
AAGACAGAGATCCCTGCACA+AGG + chr4_4:3548255-3548274 None:intergenic 50.0%
ATGGTCTCAATGCTGCAGCT+TGG - chr4_4:3548427-3548446 Msa0664540:intron 50.0%
AGATATGGCTGGAATCCTGC+AGG - chr4_4:3548548-3548567 Msa0664540:intron 50.0%
! GAGCTTTGTGAAGATGCTCG+CGG - chr4_4:3548573-3548592 Msa0664540:intron 50.0%
CCTCATCTTCGAGCTCAAGT+TGG + chr4_4:3548998-3549017 None:intergenic 50.0%
CCAACTTGAGCTCGAAGATG+AGG - chr4_4:3548995-3549014 Msa0664540:intron 50.0%
GACGATCTTAAACGTGCCAC+TGG - chr4_4:3549023-3549042 Msa0664540:intron 50.0%
TACTGTCATCAACCGGACCA+AGG - chr4_4:3549172-3549191 Msa0664540:intron 50.0%
TCTGGAGAGTTTCCTTGGTC+CGG + chr4_4:3549187-3549206 None:intergenic 50.0%
GCGTCCACAAAACTACACTC+TGG - chr4_4:3549253-3549272 Msa0664540:intron 50.0%
!! GGAGCCAGAGTGTAGTTTTG+TGG + chr4_4:3549260-3549279 None:intergenic 50.0%
! TCCTGCATCTTGTGCTGATG+TGG - chr4_4:3549436-3549455 Msa0664540:CDS 50.0%
! CTATGTGGGCTGAGTTTGAG+TGG - chr4_4:3549468-3549487 Msa0664540:CDS 50.0%
TGTACGCGTACTTTCCACCT+TGG - chr4_4:3549908-3549927 Msa0664540:CDS 50.0%
GTCCCCTAGTAGTAGCCTAA+TGG - chr4_4:3549977-3549996 Msa0664540:CDS 50.0%
AAAGGAGAGGTAGATCTCGG+TGG - chr4_4:3550218-3550237 Msa0664540:intron 50.0%
TGGTCCTGTCTTGATGGGAT+TGG - chr4_4:3550827-3550846 Msa0664540:CDS 50.0%
GGTCCTGTCTTGATGGGATT+GGG - chr4_4:3550828-3550847 Msa0664540:CDS 50.0%
CAAGATGAGAGGGAGTTCCT+GGG - chr4_4:3551189-3551208 Msa0664540:CDS 50.0%
TCTGCATTGGAAGGTGAGTG+TGG - chr4_4:3551532-3551551 Msa0664540:CDS 50.0%
CAAGACTCAGAGCAATTCCC+TGG + chr4_4:3551678-3551697 None:intergenic 50.0%
! CAGGGAATTGCTCTGAGTCT+TGG - chr4_4:3551676-3551695 Msa0664540:CDS 50.0%
! GGGAATTGCTCTGAGTCTTG+GGG - chr4_4:3551678-3551697 Msa0664540:CDS 50.0%
! TGCACCGACCGCGATTAAAG+CGG - chr4_4:3547460-3547479 Msa0664540:intron 55.0%
GGTTGTTAAGACGCAGAGCG+GGG - chr4_4:3547724-3547743 Msa0664540:CDS 55.0%
! AGCGGGGAGCATGAGAAGAA+TGG - chr4_4:3547740-3547759 Msa0664540:CDS 55.0%
! GCGGGGAGCATGAGAAGAAT+GGG - chr4_4:3547741-3547760 Msa0664540:CDS 55.0%
! CGGGGAGCATGAGAAGAATG+GGG - chr4_4:3547742-3547761 Msa0664540:CDS 55.0%
ACAACAGTACTCGCCACCTC+CGG + chr4_4:3547818-3547837 None:intergenic 55.0%
! CACCATCTCTGAGGATGGAG+AGG - chr4_4:3548099-3548118 Msa0664540:intron 55.0%
ACCCTCTCCATCCTCAGAGA+TGG + chr4_4:3548104-3548123 None:intergenic 55.0%
GACATCAAAGGCTGTGCAGC+AGG - chr4_4:3548129-3548148 Msa0664540:intron 55.0%
CGACCACTGTGTCTTCTAGG+AGG - chr4_4:3548158-3548177 Msa0664540:intron 55.0%
AGGCCTCCTAGAAGACACAG+TGG + chr4_4:3548164-3548183 None:intergenic 55.0%
CTGGGTAGCATAGGTCCCAT+CGG + chr4_4:3548197-3548216 None:intergenic 55.0%
AGCAGCACTCTGGGTAGCAT+AGG + chr4_4:3548206-3548225 None:intergenic 55.0%
CAGTCTCATGAGCAGCACTC+TGG + chr4_4:3548216-3548235 None:intergenic 55.0%
AGAGATCCCTGCACAAGGGT+AGG + chr4_4:3548250-3548269 None:intergenic 55.0%
TACATGCGACAACTGCCCCA+AGG + chr4_4:3548321-3548340 None:intergenic 55.0%
CTTCACAAAGCTCTGCCTGC+AGG + chr4_4:3548566-3548585 None:intergenic 55.0%
GAGGTCATCAGGCTGTGCAT+TGG + chr4_4:3548647-3548666 None:intergenic 55.0%
TGAGCTCGAAGATGAGGTGC+AGG - chr4_4:3549001-3549020 Msa0664540:intron 55.0%
GCCACATCAGCACAAGATGC+AGG + chr4_4:3549440-3549459 None:intergenic 55.0%
GCAAGATGAGAGGGAGTTCC+TGG - chr4_4:3551188-3551207 Msa0664540:CDS 55.0%
AAGGAACTCACGGTGGAGTC+AGG + chr4_4:3551245-3551264 None:intergenic 55.0%
CGCGGTCGGTGCAGAACTAA+GGG + chr4_4:3547453-3547472 None:intergenic 60.0%
TCGCGGTCGGTGCAGAACTA+AGG + chr4_4:3547454-3547473 None:intergenic 60.0%
! GCAGCCGCTTTAATCGCGGT+CGG + chr4_4:3547467-3547486 None:intergenic 60.0%
! CTCTGAGGATGGAGAGGGTC+AGG - chr4_4:3548105-3548124 Msa0664540:intron 60.0%
AGGCCTGCGATTCTTGCCGA+TGG - chr4_4:3548178-3548197 Msa0664540:intron 60.0%
GGCCTGCGATTCTTGCCGAT+GGG - chr4_4:3548179-3548198 Msa0664540:intron 60.0%
GTCCCATCGGCAAGAATCGC+AGG + chr4_4:3548184-3548203 None:intergenic 60.0%
CACAAGGGTAGGCGGTGACA+TGG + chr4_4:3548239-3548258 None:intergenic 60.0%
TCACCGCCTACCCTTGTGCA+GGG - chr4_4:3548241-3548260 Msa0664540:intron 60.0%
GATCCCTGCACAAGGGTAGG+CGG + chr4_4:3548247-3548266 None:intergenic 60.0%
GTCACCGCCTACCCTTGTGC+AGG - chr4_4:3548240-3548259 Msa0664540:intron 65.0%
TAAGCAGCGCCGTGAGACCG+AGG - chr4_4:3548597-3548616 Msa0664540:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 3547185 3551749 3547185 ID=Msa0664540;Name=Msa0664540
chr4_4 mRNA 3547185 3551749 3547185 ID=Msa0664540-mRNA-1;Parent=Msa0664540;Name=Msa0664540-mRNA-1;_AED=0.02;_eAED=0.02;_QI=42|0.66|0.75|1|1|1|4|11|776
chr4_4 exon 3547185 3547403 3547185 ID=Msa0664540-mRNA-1:exon:1166;Parent=Msa0664540-mRNA-1
chr4_4 exon 3547681 3547766 3547681 ID=Msa0664540-mRNA-1:exon:1165;Parent=Msa0664540-mRNA-1
chr4_4 exon 3549435 3550001 3549435 ID=Msa0664540-mRNA-1:exon:1164;Parent=Msa0664540-mRNA-1
chr4_4 exon 3550238 3551749 3550238 ID=Msa0664540-mRNA-1:exon:1163;Parent=Msa0664540-mRNA-1
chr4_4 five_prime_UTR 3551708 3551749 3551708 ID=Msa0664540-mRNA-1:five_prime_utr;Parent=Msa0664540-mRNA-1
chr4_4 CDS 3550238 3551707 3550238 ID=Msa0664540-mRNA-1:cds;Parent=Msa0664540-mRNA-1
chr4_4 CDS 3549435 3550001 3549435 ID=Msa0664540-mRNA-1:cds;Parent=Msa0664540-mRNA-1
chr4_4 CDS 3547681 3547766 3547681 ID=Msa0664540-mRNA-1:cds;Parent=Msa0664540-mRNA-1
chr4_4 CDS 3547196 3547403 3547196 ID=Msa0664540-mRNA-1:cds;Parent=Msa0664540-mRNA-1
chr4_4 three_prime_UTR 3547185 3547195 3547185 ID=Msa0664540-mRNA-1:three_prime_utr;Parent=Msa0664540-mRNA-1
Gene Sequence

>Msa0664540

ATGCTGTTTTCGTGTGCGCAAGATCGTGCTGTGAATTATCTTTTTACGAATATTGATAGGATTATTGATTGGGGGGAACAGTTACAAATGGTGGTTTTGGAATTGATTAAGAAAGTTTGTAGGAATAATAAGGGAGAGAAAGGGAAATATATTAAGATTATTATTTCTTTGTTGAGTGCTAATTCTACCGCTGTTGTTTATGAATGTGCTGGTACGCTTGTTTCCCTTAGTTCTGCACCGACCGCGATTAAAGCGGCTGCGAATACTTATTGTCAGTTGTTGCTTTCTCAAAGTGATAACAATGTGAAGCTTATTGTGCTTGATCGACTTAACGAGCTTAAGAGGGATAATAGGGAGATTATGGTTGATATGGTTATGGATGTCCTTAGGGCACTTTCGACTCCTAATCATGATATTAGAAGGAAAACTATTGATATTGCTCTTGAGCTTATTACACCTAAGAATATTGATCAGGTTGTTATGATGCTTAAGAAGGAGGTTGTTAAGACGCAGAGCGGGGAGCATGAGAAGAATGGGGAGTATAGGCAGATGTTGGTGCAGGCAATTCATACTTGTGCTATTAAGTTTCCGGAGGTGGCGAGTACTGTTGTGCATTTGTTGATGGATTTCTTGGGAGATACAAATGTTGCGTCTGCTATGGATGTGGTTGTTTTCGTGCGGGAGATTATTGAGACAAACCCTAAGCTGCGTGTTTCTATCATCACTAGGCTTTTGGATACTTTCTATCAGATTCGGGCTGCTAGGGTTTGTTCTTGTGCTCTGTGGATTATTGGTGAGTATTGTTTGTCTCTTTCGGAGGTTGAGAGTGGAATTGCAACTATTAAGCAGTGTCTTGGTGATCTTCCCTTTTACACCATCTCTGAGGATGGAGAGGGTCAGGAGACATCAAAGGCTGTGCAGCAGGTGAACTCGACCACTGTGTCTTCTAGGAGGCCTGCGATTCTTGCCGATGGGACCTATGCTACCCAGAGTGCTGCTCATGAGACTGCCATGTCACCGCCTACCCTTGTGCAGGGATCTCTGTCTTCTATTGGGAACTTGAGATCTCTGATTCTTTCGGGTGATTTCTTCCTTGGGGCAGTTGTCGCATGTACACTGACAAAGCTTATCTTAAGGTTGGAAGAGGTTCAGACCTCAAAAGTTGAAGTTAACAAGGCAACTTCACAGTCCTTGTTGATCATGGTCTCAATGCTGCAGCTTGGTCAGTCTTCAGTTCTTCCACATCCAATTGATAATGATTCTCATGACAGGGTCGTCCTTTGCATTAGATTGCTGTGTAATACTGGTGATGAGATAAGGAAGATATGGCTGGAATCCTGCAGGCAGAGCTTTGTGAAGATGCTCGCGGATAAGCAGCGCCGTGAGACCGAGGAGATTAAAGCAAAGGCACAGATTTCCAATGCACAGCCTGATGACCTCATCGACTTTTATCACTTGAAGAGCAGAAAGTACACTTACTCATCTGGTATTCATTCAAATGTTCAATCTGTCTATGCTTTTCAGGGTATGAGCCAACTTGAGCTCGAAGATGAGGTGCAGGACGATCTTAAACGTGCCACTGGAGAGTTTACAAAGGATGCTGATGATGCAAATAAACTTAATCGCATTCTTCAGCTCACTGGGTTCAGTGATCCTGTCTATGCTGAAGCATATGTAACAGTGCATCATTATGACATTGTCCTTGATGTTACTGTCATCAACCGGACCAAGGAAACTCTCCAGAATTTATGTTTGGAGTTAGCAACTATGGGTGATCTCAAACTTGTTGAGCGTCCACAAAACTACACTCTGGCTCCAGAATCAAGCAAACAGATCAAGGCCAACATCAAGGTTTCTTCCACTGAAACTGGAGTTATATTCGGTAATATAGTTTATGAGACATCTTCAAATGTTCTTGAGAGAACAGTTATTGTTCTAAATGACATTCATATTGATATCATGGACTATATTGCTCCTGCATCTTGTGCTGATGTGGCCTTTAGAACTATGTGGGCTGAGTTTGAGTGGGAAAACAAGGTTGCTGTAAATACGGTATTGCAAGATGAGAGGGAGTTCCTGGGCCACATTATCAAGTCTACAAATATGAAGTGCCTGACTCCACCCTCTGCATTGGAAGGTGAGTGTGGTTTTCTAGCTGCAAATCTGTATGCAAAGAGTGTTTTTGGGGAAGATGCTCTGGTGAATGTTAGCATTGAGAAGCAATCCGATGGTAAATTGAGCGGTTATATCAGAATAAGAAGTAAAACCCAGGGAATTGCTCTGAGTCTTGGGGATAAAATCACTTTGAAGCAGAAGGGAACTGCTCAATAG
Protein sequence

>Msa0664540

MLFSCAQDRAVNYLFTNIDRIIDWGEQLQMVVLELIKKVCRNNKGEKGKYIKIIISLLSANSTAVVYECAGTLVSLSSAPTAIKAAANTYCQLLLSQSDNNVKLIVLDRLNELKRDNREIMVDMVMDVLRALSTPNHDIRRKTIDIALELITPKNIDQVVMMLKKEVVKTQSGEHEKNGEYRQMLVQAIHTCAIKFPEVASTVVHLLMDFLGDTNVASAMDVVVFVREIIETNPKLRVSIITRLLDTFYQIRAARVCSCALWIIGEYCLSLSEVESGIATIKQCLGDLPFYTISEDGEGQETSKAVQQVNSTTVSSRRPAILADGTYATQSAAHETAMSPPTLVQGSLSSIGNLRSLILSGDFFLGAVVACTLTKLILRLEEVQTSKVEVNKATSQSLLIMVSMLQLGQSSVLPHPIDNDSHDRVVLCIRLLCNTGDEIRKIWLESCRQSFVKMLADKQRRETEEIKAKAQISNAQPDDLIDFYHLKSRKYTYSSGIHSNVQSVYAFQGMSQLELEDEVQDDLKRATGEFTKDADDANKLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNLCLELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSSNVLERTVIVLNDIHIDIMDYIAPASCADVAFRTMWAEFEWENKVAVNTVLQDEREFLGHIIKSTNMKCLTPPSALEGECGFLAANLYAKSVFGEDALVNVSIEKQSDGKLSGYIRIRSKTQGIALSLGDKITLKQKGTAQ*