AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1450720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450720 MtrunA17_Chr5g0396811 99.566 692 3 0 1 692 1 692 0.0 1408
Msa1450720 MtrunA17_Chr6g0488381 94.109 696 39 2 1 695 1 695 0.0 1321
Msa1450720 MtrunA17_Chr4g0066781 65.753 365 107 5 329 691 71 419 2.20e-158 463
Msa1450720 MtrunA17_Chr4g0066781 31.804 327 193 12 10 318 5 319 1.01e-28 119
Msa1450720 MtrunA17_Chr7g0254051 75.083 301 61 5 2 297 3 294 4.89e-155 450
Msa1450720 MtrunA17_Chr7g0254051 29.876 241 134 9 383 616 84 296 9.07e-21 93.6
Msa1450720 MtrunA17_Chr7g0254051 24.111 253 139 6 264 516 86 285 4.79e-11 64.3
Msa1450720 MtrunA17_Chr4g0066771 67.614 352 107 4 329 677 82 429 3.90e-154 453
Msa1450720 MtrunA17_Chr4g0066771 30.383 339 202 11 7 318 2 333 1.12e-28 119
Msa1450720 MtrunA17_Chr4g0003621 85.135 74 11 0 268 341 13 86 1.06e-36 132
Msa1450720 MtrunA17_Chr2g0281221 26.235 324 194 11 92 380 436 749 1.02e-17 87.8
Msa1450720 MtrunA17_Chr2g0281221 25.911 247 172 5 90 325 526 772 7.03e-15 78.6
Msa1450720 MtrunA17_Chr4g0003611 77.551 49 9 1 361 409 2 48 1.19e-17 78.2
Msa1450720 MtrunA17_Chr1g0148901 24.686 478 293 17 63 507 225 668 2.06e-13 73.9
Msa1450720 MtrunA17_Chr1g0148901 21.461 438 283 14 93 506 482 882 4.19e-12 69.7
Msa1450720 MtrunA17_Chr7g0242541 22.711 546 325 17 62 546 360 869 5.68e-13 72.8
Msa1450720 MtrunA17_Chr4g0068341 23.102 303 199 6 90 362 220 518 5.26e-12 69.3
Msa1450720 MtrunA17_Chr6g0460371 25.121 207 144 5 113 313 254 455 4.37e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450720 AT5G41770.1 81.197 702 124 1 2 695 3 704 0.0 1160
Msa1450720 AT5G45990.2 77.339 684 145 2 7 689 4 678 0.0 1075
Msa1450720 AT5G45990.1 77.696 677 141 2 14 689 1 668 0.0 1068
Msa1450720 AT3G13210.1 68.813 699 169 4 1 694 1 655 0.0 941
Msa1450720 AT3G51110.1 74.564 401 99 3 26 423 5 405 0.0 622
Msa1450720 AT3G51110.1 26.346 353 217 11 227 560 73 401 1.08e-19 92.8
Msa1450720 AT3G51110.1 27.541 305 180 12 385 681 73 344 3.95e-19 90.9
Msa1450720 AT4G03430.2 23.892 519 314 16 73 547 369 850 3.09e-17 87.0
Msa1450720 AT4G03430.3 23.892 519 314 16 73 547 369 850 3.09e-17 87.0
Msa1450720 AT4G03430.1 23.892 519 314 16 73 547 369 850 3.09e-17 87.0
Msa1450720 AT5G28740.1 25.382 327 197 14 92 382 424 739 2.41e-16 84.0
Msa1450720 AT1G17760.1 26.316 209 145 5 113 317 254 457 2.51e-13 73.9
Msa1450720 AT3G17040.2 23.284 335 224 13 104 432 181 488 2.26e-11 67.4
Msa1450720 AT3G17040.1 23.284 335 224 13 104 432 215 522 2.70e-11 67.4

Find 183 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTCTTCTTGAGCTTCT+TGG 0.162393 tig0033043:+1365 None:intergenic
TTAAGCAGCCAAGTCAATTT+TGG 0.171656 tig0033043:-924 Msa1450720:three_prime_UTR
ACGGGTGCTCGTCAAATATT+AGG 0.182901 tig0033043:-2533 Msa1450720:CDS
TACACGTGCGCGTTCGGTTT+GGG 0.226321 tig0033043:-6173 Msa1450720:CDS
TAGGGTTGGGTCTGCATCTT+TGG 0.247775 tig0033043:+6483 None:intergenic
AAAACTATATGAAAAGTATT+TGG 0.269243 tig0033043:-2327 Msa1450720:CDS
GGAAGAGAGTGTCGGGAATA+AGG 0.273700 tig0033043:-5447 Msa1450720:CDS
TAGTATGTTACCTTATCTTT+AGG 0.282919 tig0033043:+2491 None:intergenic
TACACTCAATAATTGACTTT+TGG 0.285823 tig0033043:+741 None:intergenic
CTTCCTCTTTCTCTATCGTT+AGG 0.293521 tig0033043:-6534 Msa1450720:five_prime_UTR
CTCAACTTGGAGGCTTCATC+TGG 0.300668 tig0033043:-1426 Msa1450720:CDS
CTTCTCTTCTTGAGCTTCTT+GGG 0.305265 tig0033043:+1366 None:intergenic
TTACACGTGCGCGTTCGGTT+TGG 0.307935 tig0033043:-6174 Msa1450720:CDS
CTACTGAAGATGGTTCTTCT+AGG 0.309477 tig0033043:-1335 Msa1450720:intron
AGATGAGAGTTTAGAATTAT+CGG 0.314452 tig0033043:-1683 Msa1450720:CDS
AGTTCTCATTTGCAAAGATA+TGG 0.344500 tig0033043:-2595 Msa1450720:CDS
TTAATCATGCGAGGAATGTT+TGG 0.350016 tig0033043:-6072 Msa1450720:CDS
GAGATGCTTGGCAATGTCGC+TGG 0.357091 tig0033043:-5986 Msa1450720:CDS
TGCTCCGCTGTGATTTGAAT+TGG 0.358671 tig0033043:+6388 None:intergenic
TTCGGTGGAATGTCAGTGTT+TGG 0.362517 tig0033043:-6234 Msa1450720:CDS
TCTTTGCAAATGAGAACTTC+TGG 0.364205 tig0033043:+2600 None:intergenic
TCAGCTGACGTATTTCAAAC+TGG 0.364851 tig0033043:+2561 None:intergenic
AGGATTTAATCCGGAGAGTT+CGG 0.371102 tig0033043:-6252 Msa1450720:CDS
CAATGTCGCTGGGGCGAGGC+AGG 0.375002 tig0033043:-5975 Msa1450720:CDS
CAAATATTAGGGAATGCTAT+TGG 0.375651 tig0033043:-2521 Msa1450720:CDS
GCTTCTTGGGCAGCTTAGAC+TGG 0.380324 tig0033043:+1379 None:intergenic
AGAACTTCTGGTGAGGTATC+TGG 0.391393 tig0033043:+2612 None:intergenic
GTGGTTTGATTATATAAGAT+TGG 0.396082 tig0033043:-5468 Msa1450720:CDS
CAGCTGAGGAGAAGCGATAC+TGG 0.397271 tig0033043:-5379 Msa1450720:CDS
ATCCGTTGAATTATGATTCG+TGG 0.398953 tig0033043:-5487 Msa1450720:CDS
CGTCATTAAGGAAATGTGTA+AGG 0.403988 tig0033043:-770 Msa1450720:three_prime_UTR
TTGAGAAACAGTATGGTGAT+AGG 0.405534 tig0033043:-5574 Msa1450720:CDS
TAATCATGCGAGGAATGTTT+GGG 0.406922 tig0033043:-6071 Msa1450720:CDS
TCTCAAATGCCACAAACTTC+CGG 0.412003 tig0033043:+5591 None:intergenic
GGCTTCCATGATCTTGAGAT+TGG 0.414299 tig0033043:+1054 None:intergenic
TTCCTCTTTCTCTATCGTTA+GGG 0.418812 tig0033043:-6533 Msa1450720:five_prime_UTR
ACTTAAGCTACAGTATTTGC+CGG 0.422778 tig0033043:+946 None:intergenic
AGGCATGTCCAATGCTGGTT+GGG 0.424214 tig0033043:+2202 None:intergenic
TGATCGAACAAAGCACTTGA+AGG 0.427591 tig0033043:-1743 Msa1450720:CDS
GGGATTGAGGATGCTATTGT+TGG 0.433244 tig0033043:-5548 Msa1450720:CDS
AAGAAGACATGGCTAAGGTT+TGG 0.439415 tig0033043:+6506 None:intergenic
TGCAATTGCCCAACCAGCAT+TGG 0.442244 tig0033043:-2210 Msa1450720:CDS
GGGCAATGCTATTAGAGAAA+TGG 0.442491 tig0033043:-1449 Msa1450720:CDS
TCATGGAAGCCGCTTACAAA+TGG 0.446443 tig0033043:-1042 Msa1450720:CDS
AGATGCTTGGCAATGTCGCT+GGG 0.449067 tig0033043:-5985 Msa1450720:CDS
AAAGAGGAAGAAGACGATAC+AGG 0.450856 tig0033043:+6547 None:intergenic
GGAGTTTGAGGAAAGGTGTA+AGG 0.453060 tig0033043:-5687 Msa1450720:CDS
TTCGGTTTGGGAACGAGCAT+TGG 0.457130 tig0033043:-6161 Msa1450720:CDS
TCAACTTGGAGGCTTCATCT+GGG 0.458678 tig0033043:-1425 Msa1450720:CDS
GAGGCTTCATCTGGGGAGCT+AGG 0.458747 tig0033043:-1417 Msa1450720:CDS
GATAACCATCCTTGCTGATC+CGG 0.459943 tig0033043:+5926 None:intergenic
TGTGGCGTTTGCGGAGTTTG+AGG 0.461569 tig0033043:-5699 Msa1450720:CDS
GAGTGAGATAACCTAGGGTT+GGG 0.463081 tig0033043:+6470 None:intergenic
CTCGCCGAGTTCGGTTGAAT+CGG 0.463406 tig0033043:+6303 None:intergenic
TTGGTTGAATGTGTTTCCTC+GGG 0.468573 tig0033043:+1073 None:intergenic
TTGGCAATGTCGCTGGGGCG+AGG 0.468746 tig0033043:-5979 Msa1450720:CDS
GGCAGCGCTATATTTATTTG+TGG 0.468806 tig0033043:-5358 Msa1450720:intron
TCCAGATTTAAAAGAAGAAA+GGG 0.469041 tig0033043:-1469 Msa1450720:CDS
CTCCAGATTTAAAAGAAGAA+AGG 0.471933 tig0033043:-1470 Msa1450720:CDS
CGCTGTGATTTGAATTGGAG+CGG 0.473589 tig0033043:+6393 None:intergenic
GTGGCATTTGAGAAACAGTA+TGG 0.475591 tig0033043:-5581 Msa1450720:CDS
TGCCTGTTTAGAGGTGTTTG+AGG 0.476347 tig0033043:-1520 Msa1450720:intron
GGATTTGTACCGGAAGTTTG+TGG 0.478503 tig0033043:-5600 Msa1450720:CDS
GTAAGGAGGCAGAGCGTGCT+AGG 0.478780 tig0033043:-5670 Msa1450720:CDS
TGGTGATAGGGAAGGGATTG+AGG 0.479307 tig0033043:-5561 Msa1450720:CDS
TCAAGCTTCCACGTCCAACT+AGG 0.480728 tig0033043:-6432 Msa1450720:CDS
AGACAAGTTTCTACTGAAGA+TGG 0.481734 tig0033043:-1345 Msa1450720:CDS
TCATAAACATTCCTCGCCTT+AGG 0.481974 tig0033043:+5770 None:intergenic
GAGACGATACTCGCCGAGTT+CGG 0.482763 tig0033043:+6294 None:intergenic
CGGGTGCTCGTCAAATATTA+GGG 0.485586 tig0033043:-2532 Msa1450720:CDS
TTCAACCAATCTCAAGATCA+TGG 0.485593 tig0033043:-1059 Msa1450720:CDS
ATTATCGGAACAAGAACAAA+AGG 0.485892 tig0033043:-1668 Msa1450720:CDS
AGGAATTCGAGGATTTAATC+CGG 0.486582 tig0033043:-6261 Msa1450720:CDS
CAGTATCGCTTCTCCTCAGC+TGG 0.490512 tig0033043:+5380 None:intergenic
AAATCCTCAGCCCTCCCCTT+CGG 0.491990 tig0033043:+5617 None:intergenic
GTCATCCTAGGGTTGGTGCT+TGG 0.492213 tig0033043:-5832 Msa1450720:CDS
AACAGTATGGTGATAGGGAA+GGG 0.497023 tig0033043:-5568 Msa1450720:CDS
AGCAAATTCTTCGTGAAGCT+AGG 0.502033 tig0033043:-6369 Msa1450720:CDS
AACTCAGGCATGTCCAATGC+TGG 0.504518 tig0033043:+2197 None:intergenic
TAAGATTGGAAGAGAGTGTC+GGG 0.508930 tig0033043:-5454 Msa1450720:CDS
ATTGGTTGAATGTGTTTCCT+CGG 0.509385 tig0033043:+1072 None:intergenic
CGAGTGAGATAACCTAGGGT+TGG 0.511421 tig0033043:+6469 None:intergenic
GAAGAATGGCGAGGTTCCTA+AGG 0.514090 tig0033043:-5786 Msa1450720:CDS
GCTGTGATTTGAATTGGAGC+GGG 0.516717 tig0033043:+6394 None:intergenic
TGCGGTTACTCTCTTGCCGC+GGG 0.517611 tig0033043:-6044 Msa1450720:CDS
CAGCTGACGTATTTCAAACT+GGG 0.517928 tig0033043:+2562 None:intergenic
TTAATAACCCAAAATTGACT+TGG 0.518461 tig0033043:+916 None:intergenic
ATGCTATTGTTGGGAAGAGA+AGG 0.518921 tig0033043:-5538 Msa1450720:CDS
GTATCGTCTCCGGAAAAGAA+AGG 0.519406 tig0033043:-6281 Msa1450720:CDS
GTGGTATAAGTATATTCATA+TGG 0.521111 tig0033043:-6011 Msa1450720:CDS
ATTAGAGAAATGGCTCAACT+TGG 0.521804 tig0033043:-1439 Msa1450720:CDS
ATCACCGATTCAACCGAACT+CGG 0.523459 tig0033043:-6307 Msa1450720:CDS
AATAAGAGTATCTTGTAGCT+TGG 0.524038 tig0033043:-991 Msa1450720:exon
CTCTATGAAGAACTCGATGC+TGG 0.524471 tig0033043:-5220 Msa1450720:CDS
AACCCTAACGATAGAGAAAG+AGG 0.524499 tig0033043:+6531 None:intergenic
TGGAAAGGCTCCTAAAGATA+AGG 0.526946 tig0033043:-2501 Msa1450720:intron
TGAGAAACAGTATGGTGATA+GGG 0.526975 tig0033043:-5573 Msa1450720:CDS
AGAGAAATGGCTCAACTTGG+AGG 0.527102 tig0033043:-1436 Msa1450720:CDS
TTTGCCGGGTTATACAAGAA+TGG 0.532683 tig0033043:+961 None:intergenic
CCGGAAAAGAAAGGAATTCG+AGG 0.534313 tig0033043:-6272 Msa1450720:CDS
GAACAAAGCACTTGAAGGTA+TGG 0.535144 tig0033043:-1738 Msa1450720:CDS
CAAGCTTCCACGTCCAACTA+GGG 0.535750 tig0033043:-6431 Msa1450720:CDS
TGACATTCCACCGAACTCTC+CGG 0.537024 tig0033043:+6242 None:intergenic
CAGGCATGTCCAATGCTGGT+TGG 0.538335 tig0033043:+2201 None:intergenic
GCGAAGTTTGAGATGAAGAA+TGG 0.539929 tig0033043:-5800 Msa1450720:CDS
AAACAGTATGGTGATAGGGA+AGG 0.543304 tig0033043:-5569 Msa1450720:CDS
GGATTGAGGATGCTATTGTT+GGG 0.544390 tig0033043:-5547 Msa1450720:CDS
ATTCATATGGAGGAGATGCT+TGG 0.545848 tig0033043:-5998 Msa1450720:CDS
GAGCAAGAGCGCTTTATGAA+AGG 0.547966 tig0033043:-1771 Msa1450720:CDS
TGCACTTGATCATATTCCGA+AGG 0.550436 tig0033043:-5633 Msa1450720:CDS
TTGCTTCTTCCATTTGTAAG+CGG 0.551687 tig0033043:+1033 None:intergenic
TCGGGAATAAGGAAAGAACT+AGG 0.555595 tig0033043:-5436 Msa1450720:CDS
CTTAAGCTACAGTATTTGCC+GGG 0.555956 tig0033043:+947 None:intergenic
TGGACATGCCTGAGTTGTTG+TGG 0.557171 tig0033043:-2190 Msa1450720:CDS
TTTGGAAGAAGACATGGCTA+AGG 0.557300 tig0033043:+6501 None:intergenic
TTGGATTAAGTATGCACAGT+GGG 0.558600 tig0033043:-6215 Msa1450720:CDS
CACCTGAAAATTGCTATGCA+TGG 0.558764 tig0033043:-2298 Msa1450720:CDS
AACGAGATTGAACGAGCGAG+AGG 0.562152 tig0033043:-5878 Msa1450720:CDS
GTGCGGTTACTCTCTTGCCG+CGG 0.562369 tig0033043:-6045 Msa1450720:CDS
GCAAATTCTTCGTGAAGCTA+GGG 0.562667 tig0033043:-6368 Msa1450720:CDS
CAACTTGGAGGCTTCATCTG+GGG 0.564192 tig0033043:-1424 Msa1450720:CDS
TTCTTAACCCTAGTTGGACG+TGG 0.565614 tig0033043:+6424 None:intergenic
CGTTTGCGGAGTTTGAGGAA+AGG 0.569334 tig0033043:-5694 Msa1450720:CDS
CTGTGATTTGAATTGGAGCG+GGG 0.569424 tig0033043:+6395 None:intergenic
AGAACTCGATGCTGGAGACA+TGG 0.569993 tig0033043:-5212 Msa1450720:CDS
ATACGTCAGCTGAATCTCAC+GGG 0.570788 tig0033043:-2551 Msa1450720:CDS
ACATACTTCTCGCACGCTGA+AGG 0.571646 tig0033043:+1638 None:intergenic
TATTCCGAAGGGGAGGGCTG+AGG 0.571654 tig0033043:-5621 Msa1450720:CDS
TTCAGTATGAAGATGAAGTG+AGG 0.574668 tig0033043:-5514 Msa1450720:CDS
GAGATGGATGAAATGGATGC+CGG 0.575668 tig0033043:-5945 Msa1450720:CDS
ACGAGATTGAACGAGCGAGA+GGG 0.576648 tig0033043:-5877 Msa1450720:CDS
GGATGCCGGATCAGCAAGGA+TGG 0.580624 tig0033043:-5931 Msa1450720:CDS
GCACTTGATCATATTCCGAA+GGG 0.581118 tig0033043:-5632 Msa1450720:CDS
AACTCGGCGAGTATCGTCTC+CGG 0.581315 tig0033043:-6291 Msa1450720:CDS
CGTATCCAAGCACCAACCCT+AGG 0.581983 tig0033043:+5827 None:intergenic
TGGACGTGGAAGCTTGACTT+CGG 0.584194 tig0033043:+6438 None:intergenic
TGCATCTTTGGAAGAAGACA+TGG 0.584680 tig0033043:+6495 None:intergenic
TGCTCTATCAAATTCACACT+CGG 0.591262 tig0033043:+1789 None:intergenic
GGAGAAGCTAGCGGATGATG+AGG 0.592283 tig0033043:-5738 Msa1450720:CDS
ATTAGGGAATGCTATTGGAA+AGG 0.592842 tig0033043:-2516 Msa1450720:CDS
ATTAAGGAAATGTGTAAGGT+CGG 0.598325 tig0033043:-766 Msa1450720:three_prime_UTR
ATAAGATTGGAAGAGAGTGT+CGG 0.599092 tig0033043:-5455 Msa1450720:CDS
TGCCGCGGGTGGATCAGTTG+TGG 0.601214 tig0033043:-6030 Msa1450720:CDS
TGATCATATTCCGAAGGGGA+GGG 0.601416 tig0033043:-5627 Msa1450720:CDS
AAAGATGCAGACCCAACCCT+AGG 0.601930 tig0033043:-6481 Msa1450720:CDS
TGTACCTTCCACAACAACTC+AGG 0.605321 tig0033043:+2182 None:intergenic
GGTTACTCTCTTGCCGCGGG+TGG 0.606774 tig0033043:-6041 Msa1450720:CDS
ATTTAATCCGGAGAGTTCGG+TGG 0.620567 tig0033043:-6249 Msa1450720:CDS
AGCTAATGTTCCTCCAGCTG+AGG 0.621589 tig0033043:-5393 Msa1450720:CDS
GTATAAGTATATTCATATGG+AGG 0.621913 tig0033043:-6008 Msa1450720:CDS
CACTTGATCATATTCCGAAG+GGG 0.622291 tig0033043:-5631 Msa1450720:CDS
CTGGAGCTGATGATCTGAAG+TGG 0.624411 tig0033043:+1487 None:intergenic
ATAAGTTTATTAATCATGCG+AGG 0.627758 tig0033043:-6081 Msa1450720:CDS
CGGGAATAAGGAAAGAACTA+GGG 0.627920 tig0033043:-5435 Msa1450720:CDS
AATACGTCAGCTGAATCTCA+CGG 0.630113 tig0033043:-2552 Msa1450720:CDS
ATAGAGATAGAACTGCAGCT+TGG 0.631167 tig0033043:-2368 Msa1450720:CDS
TATCGCTTCTCCTCAGCTGG+AGG 0.632169 tig0033043:+5383 None:intergenic
TTGATCATATTCCGAAGGGG+AGG 0.638933 tig0033043:-5628 Msa1450720:CDS
GGAGGGCTGAGGATTTGTAC+CGG 0.641247 tig0033043:-5610 Msa1450720:CDS
GATTCCATTCTTGTATAACC+CGG 0.642262 tig0033043:-965 Msa1450720:three_prime_UTR
AACCACGAATCATAATTCAA+CGG 0.642901 tig0033043:+5485 None:intergenic
GCAAATGAGAACTTCTGGTG+AGG 0.644406 tig0033043:+2605 None:intergenic
GTTTGAGGAAAGGTGTAAGG+AGG 0.647717 tig0033043:-5684 Msa1450720:CDS
ATGGCGAGGTTCCTAAGGCG+AGG 0.653917 tig0033043:-5781 Msa1450720:CDS
TATATGAAAAGTATTTGGAG+TGG 0.655469 tig0033043:-2322 Msa1450720:CDS
ATTATAAGAATCATACTCTG+TGG 0.659123 tig0033043:-6132 Msa1450720:CDS
TGTGATTTGAATTGGAGCGG+GGG 0.661037 tig0033043:+6396 None:intergenic
AAATGGATGCCGGATCAGCA+AGG 0.663884 tig0033043:-5935 Msa1450720:CDS
GTTTGAGATGAAGAATGGCG+AGG 0.666538 tig0033043:-5795 Msa1450720:CDS
ACAGTGGGAAGAGTCGCAGA+AGG 0.666855 tig0033043:-6200 Msa1450720:CDS
CATGCCTGAGTTGTTGTGGA+AGG 0.673647 tig0033043:-2186 Msa1450720:intron
GAATGTTTATGAGAGAGCGG+TGG 0.675482 tig0033043:-5759 Msa1450720:CDS
GAGGAATGTTTGGGATCGTG+CGG 0.677707 tig0033043:-6062 Msa1450720:CDS
TACCACAACTGATCCACCCG+CGG 0.678557 tig0033043:+6028 None:intergenic
GATGCTTGGCAATGTCGCTG+GGG 0.678951 tig0033043:-5984 Msa1450720:CDS
AAATTGTGAATTGAAAGTCA+TGG 0.679573 tig0033043:-810 Msa1450720:three_prime_UTR
GAGGAATGTTTATGAGAGAG+CGG 0.686113 tig0033043:-5762 Msa1450720:CDS
GAGAGCGGTGGAGAAGCTAG+CGG 0.689654 tig0033043:-5747 Msa1450720:CDS
GAATAAGGAAAGAACTAGGG+AGG 0.691859 tig0033043:-5432 Msa1450720:CDS
TGGTTGAATGTGTTTCCTCG+GGG 0.698716 tig0033043:+1074 None:intergenic
CGCTCCAATTCAAATCACAG+CGG 0.734163 tig0033043:-6392 Msa1450720:CDS
TATCGACTATCTATTCCCCG+AGG 0.735748 tig0033043:-1089 Msa1450720:CDS
TTTGGATTAAGTATGCACAG+TGG 0.776258 tig0033043:-6216 Msa1450720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAGTTGAAATAAAAAT+AGG + tig0033043:3312-3331 None:intergenic 10.0%
!!! TATTGTAAGCATATTTTTTA+CGG - tig0033043:2127-2146 Msa1450720:intron 15.0%
!! TACATATTAATAATGACTAT+AGG - tig0033043:2413-2432 Msa1450720:intron 15.0%
!!! TTTTCTTGTATTGATAAATT+GGG - tig0033043:3466-3485 Msa1450720:intron 15.0%
!!! TCATTTTGAAACAAATTTTT+TGG + tig0033043:3787-3806 None:intergenic 15.0%
!!! GATTTTTTATTTTGAAAACT+TGG + tig0033043:4134-4153 None:intergenic 15.0%
!!! AAAACTATATGAAAAGTATT+TGG - tig0033043:4880-4899 Msa1450720:intron 15.0%
!!! TTATTAACAATTTTACAGTT+AGG + tig0033043:5373-5392 None:intergenic 15.0%
!! TTTATTAACAAATTTAACAC+AGG + tig0033043:6026-6045 None:intergenic 15.0%
!! AGAGATTTAAATAAAATGCT+TGG + tig0033043:2065-2084 None:intergenic 20.0%
!!! TATTTAAATCTCTGTTTTGT+TGG - tig0033043:2072-2091 Msa1450720:intron 20.0%
!! AAAAAATATGCTTACAATAC+AGG + tig0033043:2126-2145 None:intergenic 20.0%
!!! ATTGTAAGCATATTTTTTAC+GGG - tig0033043:2128-2147 Msa1450720:intron 20.0%
!!! TAATTAAACCATTCTAAAAG+AGG + tig0033043:2373-2392 None:intergenic 20.0%
!! CCTAAATTTGATTGATTAAA+GGG + tig0033043:2807-2826 None:intergenic 20.0%
!! TCCTAAATTTGATTGATTAA+AGG + tig0033043:2808-2827 None:intergenic 20.0%
!! GCATGAATTATTAATTCAAT+CGG + tig0033043:2954-2973 None:intergenic 20.0%
!! TTGAATTAATAATTCATGCT+CGG - tig0033043:2955-2974 Msa1450720:intron 20.0%
!! TTATAGTGTAGATAAAATAG+TGG - tig0033043:3048-3067 Msa1450720:intron 20.0%
!!! AAAGTCAAGGTTTTAAATTT+TGG + tig0033043:3224-3243 None:intergenic 20.0%
!! ATAATTCAAACATAAAGTCA+AGG + tig0033043:3237-3256 None:intergenic 20.0%
!! GTTGAAATAAAAATAGGAAT+CGG + tig0033043:3306-3325 None:intergenic 20.0%
!!! GTTTTCTTGTATTGATAAAT+TGG - tig0033043:3465-3484 Msa1450720:intron 20.0%
!!! TATTTTCCTAGATAATGAAA+TGG - tig0033043:3589-3608 Msa1450720:intron 20.0%
!! AAATTTATTACTAACATGTG+TGG + tig0033043:3711-3730 None:intergenic 20.0%
!! GTAAGAAATTAAAGTTGTAT+TGG + tig0033043:3826-3845 None:intergenic 20.0%
!!! TGTCTTTTTCTTATAAAGTA+AGG - tig0033043:3914-3933 Msa1450720:intron 20.0%
!!! GTCTTTTTCTTATAAAGTAA+GGG - tig0033043:3915-3934 Msa1450720:intron 20.0%
!! AAATTAATTACTAACATGAG+TGG + tig0033043:4055-4074 None:intergenic 20.0%
!! ACTGTAAAATTGTTAATAAC+AGG - tig0033043:5374-5393 Msa1450720:CDS 20.0%
! ATTATAAGAATCATACTCTG+TGG - tig0033043:1075-1094 Msa1450720:CDS 25.0%
! ATAAGTTTATTAATCATGCG+AGG - tig0033043:1126-1145 Msa1450720:intron 25.0%
! GTGGTATAAGTATATTCATA+TGG - tig0033043:1196-1215 Msa1450720:intron 25.0%
! GTATAAGTATATTCATATGG+AGG - tig0033043:1199-1218 Msa1450720:intron 25.0%
! GTGGTTTGATTATATAAGAT+TGG - tig0033043:1739-1758 Msa1450720:CDS 25.0%
!!! ATTGATTTTGCATTTTCTTG+TGG - tig0033043:1922-1941 Msa1450720:intron 25.0%
! TATTTGTCTGTGTATAACAT+AGG - tig0033043:1952-1971 Msa1450720:intron 25.0%
!!! TTGTAAGCATATTTTTTACG+GGG - tig0033043:2129-2148 Msa1450720:intron 25.0%
!!! TAAAATAGCCTCTTTTAGAA+TGG - tig0033043:2362-2381 Msa1450720:CDS 25.0%
!! ATCAAAAGCACAACAAAAAT+AGG + tig0033043:2761-2780 None:intergenic 25.0%
!!! TTTTGTTGTGCTTTTGATAT+TGG - tig0033043:2763-2782 Msa1450720:intron 25.0%
! CCCTTTAATCAATCAAATTT+AGG - tig0033043:2804-2823 Msa1450720:intron 25.0%
!! AAATTTAGGAGTGTGTATAT+AGG - tig0033043:2818-2837 Msa1450720:intron 25.0%
! ATTATAGAAAAAACCAACAC+CGG + tig0033043:2905-2924 None:intergenic 25.0%
!!! GTTTTTTCTATAATTGCTTC+TGG - tig0033043:2911-2930 Msa1450720:intron 25.0%
!!! AAATAGTGGTTTTTTATGTG+AGG - tig0033043:3062-3081 Msa1450720:intron 25.0%
!! TCGTCTTAATATTTTACTAG+AGG + tig0033043:3265-3284 None:intergenic 25.0%
!!! AATCATAGGGTCTATTTTTA+TGG + tig0033043:3402-3421 None:intergenic 25.0%
!!! TTTTTGGGAAAACAATCATA+GGG + tig0033043:3415-3434 None:intergenic 25.0%
!!! TTTTTTGGGAAAACAATCAT+AGG + tig0033043:3416-3435 None:intergenic 25.0%
!!! TTGAAACTTTATGGTTTTGA+TGG - tig0033043:3524-3543 Msa1450720:intron 25.0%
!! TTTTTCTTATAAAGTAAGGG+CGG - tig0033043:3918-3937 Msa1450720:intron 25.0%
! TTGGTAAACAGATTAAGAAA+TGG + tig0033043:3980-3999 None:intergenic 25.0%
!!! TGTTTTTTTTTTACCTTTCC+TGG - tig0033043:4324-4343 Msa1450720:intron 25.0%
! CGAGTTAATTTAGTAAAAGA+TGG + tig0033043:4495-4514 None:intergenic 25.0%
! ACACTACTTTCATTTCTTTA+GGG - tig0033043:4562-4581 Msa1450720:intron 25.0%
! TAGTATGTTACCTTATCTTT+AGG + tig0033043:4719-4738 None:intergenic 25.0%
! TATCTGTTGACAAAGATAAA+AGG + tig0033043:4807-4826 None:intergenic 25.0%
!!! TATATGAAAAGTATTTGGAG+TGG - tig0033043:4885-4904 Msa1450720:intron 25.0%
!! TGAGATATTGACATCTATTT+TGG + tig0033043:5103-5122 None:intergenic 25.0%
!! AGATGAGAGTTTAGAATTAT+CGG - tig0033043:5524-5543 Msa1450720:CDS 25.0%
! TCCAGATTTAAAAGAAGAAA+GGG - tig0033043:5738-5757 Msa1450720:CDS 25.0%
! TTAATAACCCAAAATTGACT+TGG + tig0033043:6294-6313 None:intergenic 25.0%
!! GACTTTCAATTCACAATTTT+AGG + tig0033043:6396-6415 None:intergenic 25.0%
! AAATTGTGAATTGAAAGTCA+TGG - tig0033043:6397-6416 Msa1450720:CDS 25.0%
!!! TACACTCAATAATTGACTTT+TGG + tig0033043:6469-6488 None:intergenic 25.0%
!!! ATTTGTTTTGTGTCATCCTA+GGG - tig0033043:1364-1383 Msa1450720:CDS 30.0%
AACCACGAATCATAATTCAA+CGG + tig0033043:1725-1744 None:intergenic 30.0%
! ATTAGACTAGCAAGATTTTC+AGG + tig0033043:2162-2181 None:intergenic 30.0%
! TTTTTATACCAATGAGGTTG+TGG - tig0033043:2213-2232 Msa1450720:CDS 30.0%
! TTTTATACCAATGAGGTTGT+GGG - tig0033043:2214-2233 Msa1450720:CDS 30.0%
!! AAGAGCTTTATGATCTTTTC+TGG - tig0033043:2318-2337 Msa1450720:CDS 30.0%
!! AGAGCTTTATGATCTTTTCT+GGG - tig0033043:2319-2338 Msa1450720:CDS 30.0%
TAATAATGACTATAGGTACC+TGG - tig0033043:2420-2439 Msa1450720:intron 30.0%
ACTTGATTGTTAGCAATTCT+TGG - tig0033043:2477-2496 Msa1450720:intron 30.0%
TGAAAGATGTCAAATAGAGT+AGG - tig0033043:2876-2895 Msa1450720:intron 30.0%
GTAAAAACCACTATATACAC+TGG + tig0033043:3102-3121 None:intergenic 30.0%
!!! ACACAGTATCTGCTTTTTAT+TGG - tig0033043:3133-3152 Msa1450720:intron 30.0%
ACTAACTAACTACTACTTGA+GGG + tig0033043:3170-3189 None:intergenic 30.0%
AACTAACTAACTACTACTTG+AGG + tig0033043:3171-3190 None:intergenic 30.0%
CAAGTAGTAGTTAGTTAGTT+AGG - tig0033043:3171-3190 Msa1450720:intron 30.0%
AGTAGTTAGTTAGTTAGGTA+AGG - tig0033043:3176-3195 Msa1450720:intron 30.0%
GAATCGGAGAATGAATAATA+GGG + tig0033043:3290-3309 None:intergenic 30.0%
TGGTAAGATACATTTCTTGT+GGG - tig0033043:3352-3371 Msa1450720:intron 30.0%
! GTTTTCCCAAAAAACATAAG+TGG - tig0033043:3422-3441 Msa1450720:intron 30.0%
ACAAGAAAACCAATGTACTA+TGG + tig0033043:3455-3474 None:intergenic 30.0%
! TTGTATTGATAAATTGGGCT+TGG - tig0033043:3471-3490 Msa1450720:intron 30.0%
!! GGGATTGATTTGAAACTTTA+TGG - tig0033043:3515-3534 Msa1450720:intron 30.0%
!!! TACTGGTTTTGAGAATAAGA+AGG - tig0033043:3547-3566 Msa1450720:intron 30.0%
!! AAGTGACACTCATTTTGAAA+CGG + tig0033043:3761-3780 None:intergenic 30.0%
GTATTTATTGAGGGTAAAGT+TGG + tig0033043:3851-3870 None:intergenic 30.0%
!! AAGTTGGGAGTATTTATTGA+GGG + tig0033043:3860-3879 None:intergenic 30.0%
CAGTTTGATAGATAGAATAG+TGG - tig0033043:4160-4179 Msa1450720:intron 30.0%
GGATAGTGCATATTAAGATT+AGG - tig0033043:4181-4200 Msa1450720:intron 30.0%
TAGTGCATATTAAGATTAGG+AGG - tig0033043:4184-4203 Msa1450720:intron 30.0%
TATTAAGATTAGGAGGAGAT+TGG - tig0033043:4191-4210 Msa1450720:intron 30.0%
AGGTTAAACTAGAAAGTCAA+TGG + tig0033043:4452-4471 None:intergenic 30.0%
!!! CTTTCTAGTTTAACCTTTTC+TGG - tig0033043:4456-4475 Msa1450720:intron 30.0%
AAGTAGTGTCAATACTTAGT+AGG + tig0033043:4551-4570 None:intergenic 30.0%
GACACTACTTTCATTTCTTT+AGG - tig0033043:4561-4580 Msa1450720:intron 30.0%
AGTTCTCATTTGCAAAGATA+TGG - tig0033043:4612-4631 Msa1450720:intron 30.0%
CAAATATTAGGGAATGCTAT+TGG - tig0033043:4686-4705 Msa1450720:intron 30.0%
ACTATATTAGAAGCTTCCAT+AGG + tig0033043:5257-5276 None:intergenic 30.0%
GAGAAAGAGAAATCACATTA+AGG + tig0033043:5289-5308 None:intergenic 30.0%
ATTATCGGAACAAGAACAAA+AGG - tig0033043:5539-5558 Msa1450720:CDS 30.0%
CTCCAGATTTAAAAGAAGAA+AGG - tig0033043:5737-5756 Msa1450720:CDS 30.0%
!! TTTCCAAGGGTTAGTTTATA+TGG - tig0033043:5928-5947 Msa1450720:CDS 30.0%
CAAATTGAGAAGAATGAAGT+AGG + tig0033043:6077-6096 None:intergenic 30.0%
!! CTCAATTTGATTTTGCAGAA+TGG - tig0033043:6088-6107 Msa1450720:CDS 30.0%
!! AATAAGAGTATCTTGTAGCT+TGG - tig0033043:6216-6235 Msa1450720:CDS 30.0%
! ACTTGTGATTTTCGTCATTA+AGG - tig0033043:6425-6444 Msa1450720:CDS 30.0%
ATTAAGGAAATGTGTAAGGT+CGG - tig0033043:6441-6460 Msa1450720:CDS 30.0%
!!! AACACCTGATTTTTTTTTGC+TGG - tig0033043:6536-6555 Msa1450720:five_prime_UTR 30.0%
TCAACCAGCAAAAAAAAATC+AGG + tig0033043:6543-6562 None:intergenic 30.0%
TTCCTCTTTCTCTATCGTTA+GGG - tig0033043:674-693 Msa1450720:three_prime_UTR 35.0%
!!! TTTTCGAGTGAGATAACCTA+GGG + tig0033043:745-764 None:intergenic 35.0%
!! GTTTTGTTCTTAACCCTAGT+TGG + tig0033043:792-811 None:intergenic 35.0%
! GAATCGGTGATTTTCTGTTT+CGG + tig0033043:891-910 None:intergenic 35.0%
AGGAATTCGAGGATTTAATC+CGG - tig0033043:946-965 Msa1450720:three_prime_UTR 35.0%
TTTGGATTAAGTATGCACAG+TGG - tig0033043:991-1010 Msa1450720:exon 35.0%
TTGGATTAAGTATGCACAGT+GGG - tig0033043:992-1011 Msa1450720:exon 35.0%
TTAATCATGCGAGGAATGTT+TGG - tig0033043:1135-1154 Msa1450720:intron 35.0%
TAATCATGCGAGGAATGTTT+GGG - tig0033043:1136-1155 Msa1450720:intron 35.0%
!! TTTTCGAGAGATGGATGAAA+TGG - tig0033043:1255-1274 Msa1450720:intron 35.0%
!!! GATTTGTTTTGTGTCATCCT+AGG - tig0033043:1363-1382 Msa1450720:CDS 35.0%
TTGAGAAACAGTATGGTGAT+AGG - tig0033043:1633-1652 Msa1450720:intron 35.0%
TGAGAAACAGTATGGTGATA+GGG - tig0033043:1634-1653 Msa1450720:intron 35.0%
TTCAGTATGAAGATGAAGTG+AGG - tig0033043:1693-1712 Msa1450720:CDS 35.0%
ATCCGTTGAATTATGATTCG+TGG - tig0033043:1720-1739 Msa1450720:CDS 35.0%
! ATAAGATTGGAAGAGAGTGT+CGG - tig0033043:1752-1771 Msa1450720:CDS 35.0%
AATGCTTGGAAGTTCACAAA+AGG + tig0033043:2051-2070 None:intergenic 35.0%
CTTACAATACAGGAAAAGCA+TGG + tig0033043:2116-2135 None:intergenic 35.0%
! GCAAGCTTTTTATACCAATG+AGG - tig0033043:2207-2226 Msa1450720:CDS 35.0%
!!! TGTGGGTTTTGATTCATTCA+CGG - tig0033043:2231-2250 Msa1450720:CDS 35.0%
TTGATTCATTCACGGTTCTT+AGG - tig0033043:2239-2258 Msa1450720:CDS 35.0%
CATATTCTCTAACATCAACC+AGG + tig0033043:2441-2460 None:intergenic 35.0%
!! TTTGAGTTTTGCTGTACTTG+TGG - tig0033043:2734-2753 Msa1450720:intron 35.0%
! AGGAGTGTGTATATAGGTTT+AGG - tig0033043:2824-2843 Msa1450720:intron 35.0%
TGTATATAGGTTTAGGAGTG+TGG - tig0033043:2831-2850 Msa1450720:intron 35.0%
CAGAAGAAAAAGATGTGTAG+TGG - tig0033043:3020-3039 Msa1450720:intron 35.0%
CAGTAAACCAGTGTATATAG+TGG - tig0033043:3092-3111 Msa1450720:intron 35.0%
GGAATCGGAGAATGAATAAT+AGG + tig0033043:3291-3310 None:intergenic 35.0%
GTGGTAAGATACATTTCTTG+TGG - tig0033043:3351-3370 Msa1450720:intron 35.0%
TTCCCAAAAAACATAAGTGG+TGG - tig0033043:3425-3444 Msa1450720:intron 35.0%
TCCCAAAAAACATAAGTGGT+GGG - tig0033043:3426-3445 Msa1450720:intron 35.0%
!!! TCCCACCACTTATGTTTTTT+GGG + tig0033043:3430-3449 None:intergenic 35.0%
!!! ATCCCACCACTTATGTTTTT+TGG + tig0033043:3431-3450 None:intergenic 35.0%
!!! CTTTATGGTTTTGATGGTAC+TGG - tig0033043:3530-3549 Msa1450720:intron 35.0%
CCTTCACCATTTCATTATCT+AGG + tig0033043:3598-3617 None:intergenic 35.0%
CCTAGATAATGAAATGGTGA+AGG - tig0033043:3595-3614 Msa1450720:intron 35.0%
!! GAAGTTGGGAGTATTTATTG+AGG + tig0033043:3861-3880 None:intergenic 35.0%
AATTGTGTGAGAGAGAAGTT+GGG + tig0033043:3875-3894 None:intergenic 35.0%
AAATTGTGTGAGAGAGAAGT+TGG + tig0033043:3876-3895 None:intergenic 35.0%
!!! ATGAGTGTCGTTTAAGGTTT+TGG + tig0033043:3999-4018 None:intergenic 35.0%
!! TTCACAATGAGTGTCGTTTA+AGG + tig0033043:4005-4024 None:intergenic 35.0%
AAACGACACTCATTGTGAAA+CGG - tig0033043:4006-4025 Msa1450720:intron 35.0%
TTTGTTGACCATCTATCAAC+AGG - tig0033043:4102-4121 Msa1450720:intron 35.0%
GTCAATCTCTGAATCAAATG+TGG + tig0033043:4300-4319 None:intergenic 35.0%
TATATCTTGAATACCCGTGA+TGG + tig0033043:4363-4382 None:intergenic 35.0%
TCTTTGCAAATGAGAACTTC+TGG + tig0033043:4610-4629 None:intergenic 35.0%
ATTAGGGAATGCTATTGGAA+AGG - tig0033043:4691-4710 Msa1450720:intron 35.0%
AGGCATATGTGAAGTTAACT+AGG + tig0033043:4787-4806 None:intergenic 35.0%
! TTTGGTGATAGCCTGATATT+TGG + tig0033043:5085-5104 None:intergenic 35.0%
!! ATTGGTAATAAGTGCTGAGT+TGG + tig0033043:5194-5213 None:intergenic 35.0%
ATAGGATAGAAATGCTATGG+GGG + tig0033043:5239-5258 None:intergenic 35.0%
CATAGGATAGAAATGCTATG+GGG + tig0033043:5240-5259 None:intergenic 35.0%
CCATAGGATAGAAATGCTAT+GGG + tig0033043:5241-5260 None:intergenic 35.0%
TCCATAGGATAGAAATGCTA+TGG + tig0033043:5242-5261 None:intergenic 35.0%
AGAGAAATCACATTAAGGCA+CGG + tig0033043:5284-5303 None:intergenic 35.0%
GCATAGATGGTTCATAGATA+TGG + tig0033043:5337-5356 None:intergenic 35.0%
TGCTCTATCAAATTCACACT+CGG + tig0033043:5421-5440 None:intergenic 35.0%
!!! TTTGTTTTGTGCCTGTTTAG+AGG - tig0033043:5678-5697 Msa1450720:CDS 35.0%
! GCCCTTTCTTCTTTTAAATC+TGG + tig0033043:5742-5761 None:intergenic 35.0%
ATTAGAGAAATGGCTCAACT+TGG - tig0033043:5768-5787 Msa1450720:CDS 35.0%
AGACAAGTTTCTACTGAAGA+TGG - tig0033043:5862-5881 Msa1450720:CDS 35.0%
ACTCATTGTTTGTCTTTGAG+TGG - tig0033043:5905-5924 Msa1450720:CDS 35.0%
CAGTGACAAAATTGCAAACA+AGG + tig0033043:5954-5973 None:intergenic 35.0%
!! ATTTTGTCACTGCTAGTTTC+TGG - tig0033043:5962-5981 Msa1450720:CDS 35.0%
! TTTCTGGTATCGTTAGCATT+AGG - tig0033043:5978-5997 Msa1450720:CDS 35.0%
ATTGGTTGAATGTGTTTCCT+CGG + tig0033043:6138-6157 None:intergenic 35.0%
TTCAACCAATCTCAAGATCA+TGG - tig0033043:6148-6167 Msa1450720:CDS 35.0%
TTGCTTCTTCCATTTGTAAG+CGG + tig0033043:6177-6196 None:intergenic 35.0%
GATTCCATTCTTGTATAACC+CGG - tig0033043:6242-6261 Msa1450720:CDS 35.0%
ACTTAAGCTACAGTATTTGC+CGG + tig0033043:6264-6283 None:intergenic 35.0%
! TTAAGCAGCCAAGTCAATTT+TGG - tig0033043:6283-6302 Msa1450720:CDS 35.0%
! TAAGCAGCCAAGTCAATTTT+GGG - tig0033043:6284-6303 Msa1450720:CDS 35.0%
CGTCATTAAGGAAATGTGTA+AGG - tig0033043:6437-6456 Msa1450720:CDS 35.0%
AAAGAGGAAGAAGACGATAC+AGG + tig0033043:663-682 None:intergenic 40.0%
CTTCCTCTTTCTCTATCGTT+AGG - tig0033043:673-692 Msa1450720:three_prime_UTR 40.0%
AACCCTAACGATAGAGAAAG+AGG + tig0033043:679-698 None:intergenic 40.0%
AAGAAGACATGGCTAAGGTT+TGG + tig0033043:704-723 None:intergenic 40.0%
TTTGGAAGAAGACATGGCTA+AGG + tig0033043:709-728 None:intergenic 40.0%
! TGCATCTTTGGAAGAAGACA+TGG + tig0033043:715-734 None:intergenic 40.0%
!!! CTTTTCGAGTGAGATAACCT+AGG + tig0033043:746-765 None:intergenic 40.0%
AGCAAATTCTTCGTGAAGCT+AGG - tig0033043:838-857 Msa1450720:three_prime_UTR 40.0%
GCAAATTCTTCGTGAAGCTA+GGG - tig0033043:839-858 Msa1450720:three_prime_UTR 40.0%
! TGATTTTCTGTTTCGGAGGA+CGG + tig0033043:884-903 None:intergenic 40.0%
! CCTCGAATTCCTTTCTTTTC+CGG + tig0033043:938-957 None:intergenic 40.0%
AGGATTTAATCCGGAGAGTT+CGG - tig0033043:955-974 Msa1450720:three_prime_UTR 40.0%
ATTCATATGGAGGAGATGCT+TGG - tig0033043:1209-1228 Msa1450720:intron 40.0%
! GCGAAGTTTGAGATGAAGAA+TGG - tig0033043:1407-1426 Msa1450720:CDS 40.0%
TCATAAACATTCCTCGCCTT+AGG + tig0033043:1440-1459 None:intergenic 40.0%
GAGGAATGTTTATGAGAGAG+CGG - tig0033043:1445-1464 Msa1450720:CDS 40.0%
TGCACTTGATCATATTCCGA+AGG - tig0033043:1574-1593 Msa1450720:intron 40.0%
GCACTTGATCATATTCCGAA+GGG - tig0033043:1575-1594 Msa1450720:intron 40.0%
CACTTGATCATATTCCGAAG+GGG - tig0033043:1576-1595 Msa1450720:intron 40.0%
TCTCAAATGCCACAAACTTC+CGG + tig0033043:1619-1638 None:intergenic 40.0%
GTGGCATTTGAGAAACAGTA+TGG - tig0033043:1626-1645 Msa1450720:intron 40.0%
AAACAGTATGGTGATAGGGA+AGG - tig0033043:1638-1657 Msa1450720:intron 40.0%
AACAGTATGGTGATAGGGAA+GGG - tig0033043:1639-1658 Msa1450720:intron 40.0%
GGATTGAGGATGCTATTGTT+GGG - tig0033043:1660-1679 Msa1450720:CDS 40.0%
ATGCTATTGTTGGGAAGAGA+AGG - tig0033043:1669-1688 Msa1450720:CDS 40.0%
!! TAAGATTGGAAGAGAGTGTC+GGG - tig0033043:1753-1772 Msa1450720:CDS 40.0%
TCGGGAATAAGGAAAGAACT+AGG - tig0033043:1771-1790 Msa1450720:CDS 40.0%
CGGGAATAAGGAAAGAACTA+GGG - tig0033043:1772-1791 Msa1450720:CDS 40.0%
GAATAAGGAAAGAACTAGGG+AGG - tig0033043:1775-1794 Msa1450720:CDS 40.0%
GGCAGCGCTATATTTATTTG+TGG - tig0033043:1849-1868 Msa1450720:intron 40.0%
ATCAAAACCCACAACCTCAT+TGG + tig0033043:2224-2243 None:intergenic 40.0%
!!! GGATACTGTTTTTAGAGCAG+TGG - tig0033043:2265-2284 Msa1450720:CDS 40.0%
TCTTGCATCAAACAAAGAGG+AGG + tig0033043:2302-2321 None:intergenic 40.0%
AGCTCTTGCATCAAACAAAG+AGG + tig0033043:2305-2324 None:intergenic 40.0%
CATCACTAGCACTTCAACTT+TGG + tig0033043:2572-2591 None:intergenic 40.0%
AGTGCTAGTGATGTACCTTA+AGG - tig0033043:2579-2598 Msa1450720:CDS 40.0%
TGTAAGAACGCTAGACCTTA+AGG + tig0033043:2597-2616 None:intergenic 40.0%
CTCTCAGTTTGTGATTCAGT+TGG - tig0033043:2677-2696 Msa1450720:intron 40.0%
TGTCAAATAGAGTAGGAGAC+CGG - tig0033043:2883-2902 Msa1450720:intron 40.0%
GTTAAGATAGATGCTCAACG+TGG - tig0033043:3332-3351 Msa1450720:intron 40.0%
!! AAATTGGGCTTGGTTTGCAT+TGG - tig0033043:3481-3500 Msa1450720:intron 40.0%
CATTCTGAGTGCTTGATATG+TGG - tig0033043:3644-3663 Msa1450720:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + tig0033043:3757-3776 None:intergenic 40.0%
!!! TGACACTCATTTTGAAACGG+AGG + tig0033043:3758-3777 None:intergenic 40.0%
AACGACACTCATTGTGAAAC+GGG - tig0033043:4007-4026 Msa1450720:intron 40.0%
! GGTATCAACCTGTTGATAGA+TGG + tig0033043:4113-4132 None:intergenic 40.0%
!!! GATTGGAGAGGTTTTAGACT+TGG - tig0033043:4208-4227 Msa1450720:intron 40.0%
!!! AGAGGTTTTAGACTTGGACT+AGG - tig0033043:4214-4233 Msa1450720:intron 40.0%
CAAGAGCAAAGAAGTTGTAC+AGG + tig0033043:4268-4287 None:intergenic 40.0%
CAATAGAACTCAACCAGGAA+AGG + tig0033043:4340-4359 None:intergenic 40.0%
GTTGAGTTCTATTGCCATCA+CGG - tig0033043:4346-4365 Msa1450720:intron 40.0%
TTGAGTTCTATTGCCATCAC+GGG - tig0033043:4347-4366 Msa1450720:intron 40.0%
GTAAAAGATGGCAATAGAGC+TGG + tig0033043:4483-4502 None:intergenic 40.0%
CAGCTGACGTATTTCAAACT+GGG + tig0033043:4648-4667 None:intergenic 40.0%
TCAGCTGACGTATTTCAAAC+TGG + tig0033043:4649-4668 None:intergenic 40.0%
AATACGTCAGCTGAATCTCA+CGG - tig0033043:4655-4674 Msa1450720:intron 40.0%
TGGAAAGGCTCCTAAAGATA+AGG - tig0033043:4706-4725 Msa1450720:intron 40.0%
ATAGAGATAGAACTGCAGCT+TGG - tig0033043:4839-4858 Msa1450720:intron 40.0%
CACCTGAAAATTGCTATGCA+TGG - tig0033043:4909-4928 Msa1450720:intron 40.0%
! CTCCATGCATAGCAATTTTC+AGG + tig0033043:4914-4933 None:intergenic 40.0%
CTGTACAAGAGCCAAATATC+AGG - tig0033043:5071-5090 Msa1450720:intron 40.0%
GAAGGATAGGAAACTAGTAG+AGG + tig0033043:5133-5152 None:intergenic 40.0%
TAGGATAGAAATGCTATGGG+GGG + tig0033043:5238-5257 None:intergenic 40.0%
CCCATAGCATTTCTATCCTA+TGG - tig0033043:5238-5257 Msa1450720:intron 40.0%
GCATCAGAAGATGACAACAA+AGG + tig0033043:5311-5330 None:intergenic 40.0%
TATGAACCATCTATGCATGC+TGG - tig0033043:5341-5360 Msa1450720:intron 40.0%
TTATGACCAGCATGCATAGA+TGG + tig0033043:5350-5369 None:intergenic 40.0%
! TGATCGAACAAAGCACTTGA+AGG - tig0033043:5464-5483 Msa1450720:CDS 40.0%
! GAACAAAGCACTTGAAGGTA+TGG - tig0033043:5469-5488 Msa1450720:CDS 40.0%
ATCCTCAAACACCTCTAAAC+AGG + tig0033043:5692-5711 None:intergenic 40.0%
GGGCAATGCTATTAGAGAAA+TGG - tig0033043:5758-5777 Msa1450720:CDS 40.0%
CTTCTCTTCTTGAGCTTCTT+GGG + tig0033043:5844-5863 None:intergenic 40.0%
TCTTCTCTTCTTGAGCTTCT+TGG + tig0033043:5845-5864 None:intergenic 40.0%
CTACTGAAGATGGTTCTTCT+AGG - tig0033043:5872-5891 Msa1450720:CDS 40.0%
TTGTCTTTGAGTGGTTTCCA+AGG - tig0033043:5914-5933 Msa1450720:CDS 40.0%
TGTCTTTGAGTGGTTTCCAA+GGG - tig0033043:5915-5934 Msa1450720:CDS 40.0%
AGGCCATATAAACTAACCCT+TGG + tig0033043:5934-5953 None:intergenic 40.0%
TTGGTTGAATGTGTTTCCTC+GGG + tig0033043:6137-6156 None:intergenic 40.0%
TTTGCCGGGTTATACAAGAA+TGG + tig0033043:6249-6268 None:intergenic 40.0%
CTTAAGCTACAGTATTTGCC+GGG + tig0033043:6263-6282 None:intergenic 40.0%
!! TTGCTGGTTGATTTTGCTGA+AGG - tig0033043:6552-6571 Msa1450720:five_prime_UTR 40.0%
GAGTGAGATAACCTAGGGTT+GGG + tig0033043:740-759 None:intergenic 45.0%
TTCTTAACCCTAGTTGGACG+TGG + tig0033043:786-805 None:intergenic 45.0%
TGTGATTTGAATTGGAGCGG+GGG + tig0033043:814-833 None:intergenic 45.0%
CTGTGATTTGAATTGGAGCG+GGG + tig0033043:815-834 None:intergenic 45.0%
GCTGTGATTTGAATTGGAGC+GGG + tig0033043:816-835 None:intergenic 45.0%
CGCTGTGATTTGAATTGGAG+CGG + tig0033043:817-836 None:intergenic 45.0%
CGCTCCAATTCAAATCACAG+CGG - tig0033043:815-834 Msa1450720:three_prime_UTR 45.0%
TGCTCCGCTGTGATTTGAAT+TGG + tig0033043:822-841 None:intergenic 45.0%
! TCGGTGATTTTCTGTTTCGG+AGG + tig0033043:888-907 None:intergenic 45.0%
!! ATCACCGATTCAACCGAACT+CGG - tig0033043:900-919 Msa1450720:three_prime_UTR 45.0%
GTATCGTCTCCGGAAAAGAA+AGG - tig0033043:926-945 Msa1450720:three_prime_UTR 45.0%
CCGGAAAAGAAAGGAATTCG+AGG - tig0033043:935-954 Msa1450720:three_prime_UTR 45.0%
ATTTAATCCGGAGAGTTCGG+TGG - tig0033043:958-977 Msa1450720:three_prime_UTR 45.0%
TTCGGTGGAATGTCAGTGTT+TGG - tig0033043:973-992 Msa1450720:three_prime_UTR 45.0%
GAGATGGATGAAATGGATGC+CGG - tig0033043:1262-1281 Msa1450720:intron 45.0%
GATAACCATCCTTGCTGATC+CGG + tig0033043:1284-1303 None:intergenic 45.0%
! GTTTTGTGTCATCCTAGGGT+TGG - tig0033043:1368-1387 Msa1450720:CDS 45.0%
! GTTTGAGATGAAGAATGGCG+AGG - tig0033043:1412-1431 Msa1450720:CDS 45.0%
GAATGTTTATGAGAGAGCGG+TGG - tig0033043:1448-1467 Msa1450720:CDS 45.0%
! GGAGTTTGAGGAAAGGTGTA+AGG - tig0033043:1520-1539 Msa1450720:intron 45.0%
! GTTTGAGGAAAGGTGTAAGG+AGG - tig0033043:1523-1542 Msa1450720:intron 45.0%
TTGATCATATTCCGAAGGGG+AGG - tig0033043:1579-1598 Msa1450720:intron 45.0%
TGATCATATTCCGAAGGGGA+GGG - tig0033043:1580-1599 Msa1450720:intron 45.0%
GGATTTGTACCGGAAGTTTG+TGG - tig0033043:1607-1626 Msa1450720:intron 45.0%
GGGATTGAGGATGCTATTGT+TGG - tig0033043:1659-1678 Msa1450720:CDS 45.0%
CTCTATGAAGAACTCGATGC+TGG - tig0033043:1987-2006 Msa1450720:intron 45.0%
TTCATTCACGGTTCTTAGGC+TGG - tig0033043:2243-2262 Msa1450720:CDS 45.0%
TCATTCACGGTTCTTAGGCT+GGG - tig0033043:2244-2263 Msa1450720:CDS 45.0%
! AGGTTTAGGAGTGTGGATAC+TGG - tig0033043:2838-2857 Msa1450720:intron 45.0%
! TGGATACTGGAGTGTTCATG+TGG - tig0033043:2851-2870 Msa1450720:intron 45.0%
GTAAGGCTCTCAACTTAGAG+TGG - tig0033043:3193-3212 Msa1450720:intron 45.0%
GGTGGGATTCCATAGTACAT+TGG - tig0033043:3443-3462 Msa1450720:intron 45.0%
ACGACACTCATTGTGAAACG+GGG - tig0033043:4008-4027 Msa1450720:intron 45.0%
AGATTAGGAGGAGATTGGAG+AGG - tig0033043:4196-4215 Msa1450720:intron 45.0%
GATGGCAATAGAACTCAACC+AGG + tig0033043:4345-4364 None:intergenic 45.0%
CAATAGAGCTGGACCAGAAA+AGG + tig0033043:4472-4491 None:intergenic 45.0%
! AGAACTTCTGGTGAGGTATC+TGG + tig0033043:4598-4617 None:intergenic 45.0%
GCAAATGAGAACTTCTGGTG+AGG + tig0033043:4605-4624 None:intergenic 45.0%
ATACGTCAGCTGAATCTCAC+GGG - tig0033043:4656-4675 Msa1450720:intron 45.0%
ACGGGTGCTCGTCAAATATT+AGG - tig0033043:4674-4693 Msa1450720:intron 45.0%
CGGGTGCTCGTCAAATATTA+GGG - tig0033043:4675-4694 Msa1450720:intron 45.0%
TGTACCTTCCACAACAACTC+AGG + tig0033043:5028-5047 None:intergenic 45.0%
TTAGGCCATGCAGCATTAGT+GGG + tig0033043:5163-5182 None:intergenic 45.0%
AGAAATGCTATGGGGGGAAA+GGG + tig0033043:5232-5251 None:intergenic 45.0%
TAGAAATGCTATGGGGGGAA+AGG + tig0033043:5233-5252 None:intergenic 45.0%
!! GAGCAAGAGCGCTTTATGAA+AGG - tig0033043:5436-5455 Msa1450720:CDS 45.0%
!! TGCCTGTTTAGAGGTGTTTG+AGG - tig0033043:5687-5706 Msa1450720:CDS 45.0%
AGAGAAATGGCTCAACTTGG+AGG - tig0033043:5771-5790 Msa1450720:CDS 45.0%
TCAACTTGGAGGCTTCATCT+GGG - tig0033043:5782-5801 Msa1450720:CDS 45.0%
GGTATCGTTAGCATTAGGCT+TGG - tig0033043:5983-6002 Msa1450720:CDS 45.0%
! TATCGACTATCTATTCCCCG+AGG - tig0033043:6118-6137 Msa1450720:CDS 45.0%
TGGTTGAATGTGTTTCCTCG+GGG + tig0033043:6136-6155 None:intergenic 45.0%
GGCTTCCATGATCTTGAGAT+TGG + tig0033043:6156-6175 None:intergenic 45.0%
TCATGGAAGCCGCTTACAAA+TGG - tig0033043:6165-6184 Msa1450720:CDS 45.0%
TAGGGTTGGGTCTGCATCTT+TGG + tig0033043:727-746 None:intergenic 50.0%
AAAGATGCAGACCCAACCCT+AGG - tig0033043:726-745 Msa1450720:three_prime_UTR 50.0%
CGAGTGAGATAACCTAGGGT+TGG + tig0033043:741-760 None:intergenic 50.0%
TGGACGTGGAAGCTTGACTT+CGG + tig0033043:772-791 None:intergenic 50.0%
TCAAGCTTCCACGTCCAACT+AGG - tig0033043:775-794 Msa1450720:three_prime_UTR 50.0%
CAAGCTTCCACGTCCAACTA+GGG - tig0033043:776-795 Msa1450720:three_prime_UTR 50.0%
TGACATTCCACCGAACTCTC+CGG + tig0033043:968-987 None:intergenic 50.0%
! GGATTTTACACGTGCGCGTT+CGG - tig0033043:1028-1047 Msa1450720:CDS 50.0%
!! TTCGGTTTGGGAACGAGCAT+TGG - tig0033043:1046-1065 Msa1450720:CDS 50.0%
! GAGGAATGTTTGGGATCGTG+CGG - tig0033043:1145-1164 Msa1450720:intron 50.0%
AGATGCTTGGCAATGTCGCT+GGG - tig0033043:1222-1241 Msa1450720:intron 50.0%
AAATGGATGCCGGATCAGCA+AGG - tig0033043:1272-1291 Msa1450720:intron 50.0%
AACGAGATTGAACGAGCGAG+AGG - tig0033043:1329-1348 Msa1450720:intron 50.0%
ACGAGATTGAACGAGCGAGA+GGG - tig0033043:1330-1349 Msa1450720:intron 50.0%
GAAGAATGGCGAGGTTCCTA+AGG - tig0033043:1421-1440 Msa1450720:CDS 50.0%
!!! GGAAGCAGAGCTGCTTTTTG+TGG - tig0033043:1490-1509 Msa1450720:CDS 50.0%
!!! GCTGCTTTTTGTGGCGTTTG+CGG - tig0033043:1499-1518 Msa1450720:CDS 50.0%
CGTTTGCGGAGTTTGAGGAA+AGG - tig0033043:1513-1532 Msa1450720:intron 50.0%
TGGTGATAGGGAAGGGATTG+AGG - tig0033043:1646-1665 Msa1450720:CDS 50.0%
!! GGAAGAGAGTGTCGGGAATA+AGG - tig0033043:1760-1779 Msa1450720:CDS 50.0%
AGCTAATGTTCCTCCAGCTG+AGG - tig0033043:1814-1833 Msa1450720:CDS 50.0%
AGAACTCGATGCTGGAGACA+TGG - tig0033043:1995-2014 Msa1450720:intron 50.0%
ATAGAGTAGGAGACCGGTGT+TGG - tig0033043:2889-2908 Msa1450720:intron 50.0%
!! TTTGCATTGGCTGGGAGCAT+TGG - tig0033043:3494-3513 Msa1450720:intron 50.0%
!! TTGCATTGGCTGGGAGCATT+GGG - tig0033043:3495-3514 Msa1450720:intron 50.0%
GTTCTACAGAGAGGGCAACT+AGG + tig0033043:3682-3701 None:intergenic 50.0%
GGAGCGAAGTTCTACAGAGA+GGG + tig0033043:3690-3709 None:intergenic 50.0%
TGGAGCGAAGTTCTACAGAG+AGG + tig0033043:3691-3710 None:intergenic 50.0%
CGACACTCATTGTGAAACGG+GGG - tig0033043:4009-4028 Msa1450720:intron 50.0%
GACACTCATTGTGAAACGGG+GGG - tig0033043:4010-4029 Msa1450720:intron 50.0%
TGCAATTGCCCAACCAGCAT+TGG - tig0033043:4997-5016 Msa1450720:intron 50.0%
! AGGCATGTCCAATGCTGGTT+GGG + tig0033043:5008-5027 None:intergenic 50.0%
AACTCAGGCATGTCCAATGC+TGG + tig0033043:5013-5032 None:intergenic 50.0%
TGGACATGCCTGAGTTGTTG+TGG - tig0033043:5017-5036 Msa1450720:intron 50.0%
CATGCCTGAGTTGTTGTGGA+AGG - tig0033043:5021-5040 Msa1450720:intron 50.0%
TAGGCCATGCAGCATTAGTG+GGG + tig0033043:5162-5181 None:intergenic 50.0%
GTTAGGCCATGCAGCATTAG+TGG + tig0033043:5164-5183 None:intergenic 50.0%
! GCTGAGTTGGCAAGTTCGTT+AGG + tig0033043:5181-5200 None:intergenic 50.0%
AAATGCTATGGGGGGAAAGG+GGG + tig0033043:5230-5249 None:intergenic 50.0%
GAAATGCTATGGGGGGAAAG+GGG + tig0033043:5231-5250 None:intergenic 50.0%
ACATACTTCTCGCACGCTGA+AGG + tig0033043:5572-5591 None:intergenic 50.0%
CTGGAGCTGATGATCTGAAG+TGG + tig0033043:5723-5742 None:intergenic 50.0%
CTCAACTTGGAGGCTTCATC+TGG - tig0033043:5781-5800 Msa1450720:CDS 50.0%
CAACTTGGAGGCTTCATCTG+GGG - tig0033043:5783-5802 Msa1450720:CDS 50.0%
CTCGCCGAGTTCGGTTGAAT+CGG + tig0033043:907-926 None:intergenic 55.0%
GAGACGATACTCGCCGAGTT+CGG + tig0033043:916-935 None:intergenic 55.0%
! AACTCGGCGAGTATCGTCTC+CGG - tig0033043:916-935 Msa1450720:three_prime_UTR 55.0%
ACAGTGGGAAGAGTCGCAGA+AGG - tig0033043:1007-1026 Msa1450720:exon 55.0%
TTACACGTGCGCGTTCGGTT+TGG - tig0033043:1033-1052 Msa1450720:CDS 55.0%
TACACGTGCGCGTTCGGTTT+GGG - tig0033043:1034-1053 Msa1450720:CDS 55.0%
TACCACAACTGATCCACCCG+CGG + tig0033043:1182-1201 None:intergenic 55.0%
GAGATGCTTGGCAATGTCGC+TGG - tig0033043:1221-1240 Msa1450720:intron 55.0%
GATGCTTGGCAATGTCGCTG+GGG - tig0033043:1223-1242 Msa1450720:intron 55.0%
!! CGAGGCAGGTTTTCGAGAGA+TGG - tig0033043:1246-1265 Msa1450720:intron 55.0%
!! GTCATCCTAGGGTTGGTGCT+TGG - tig0033043:1375-1394 Msa1450720:CDS 55.0%
CGTATCCAAGCACCAACCCT+AGG + tig0033043:1383-1402 None:intergenic 55.0%
! GGAGAAGCTAGCGGATGATG+AGG - tig0033043:1469-1488 Msa1450720:CDS 55.0%
TGTGGCGTTTGCGGAGTTTG+AGG - tig0033043:1508-1527 Msa1450720:CDS 55.0%
AAATCCTCAGCCCTCCCCTT+CGG + tig0033043:1593-1612 None:intergenic 55.0%
GGAGGGCTGAGGATTTGTAC+CGG - tig0033043:1597-1616 Msa1450720:intron 55.0%
TATCGCTTCTCCTCAGCTGG+AGG + tig0033043:1827-1846 None:intergenic 55.0%
CAGTATCGCTTCTCCTCAGC+TGG + tig0033043:1830-1849 None:intergenic 55.0%
CAGCTGAGGAGAAGCGATAC+TGG - tig0033043:1828-1847 Msa1450720:intron 55.0%
!! TGGGCTTGGTTTGCATTGGC+TGG - tig0033043:3485-3504 Msa1450720:intron 55.0%
!! GGGCTTGGTTTGCATTGGCT+GGG - tig0033043:3486-3505 Msa1450720:intron 55.0%
CAGGCATGTCCAATGCTGGT+TGG + tig0033043:5009-5028 None:intergenic 55.0%
CATGCAGCATTAGTGGGGAG+GGG + tig0033043:5157-5176 None:intergenic 55.0%
CCATGCAGCATTAGTGGGGA+GGG + tig0033043:5158-5177 None:intergenic 55.0%
AATGCTATGGGGGGAAAGGG+GGG + tig0033043:5229-5248 None:intergenic 55.0%
GCTTCTTGGGCAGCTTAGAC+TGG + tig0033043:5831-5850 None:intergenic 55.0%
GTGCGGTTACTCTCTTGCCG+CGG - tig0033043:1162-1181 Msa1450720:intron 60.0%
TGCGGTTACTCTCTTGCCGC+GGG - tig0033043:1163-1182 Msa1450720:intron 60.0%
GGATGCCGGATCAGCAAGGA+TGG - tig0033043:1276-1295 Msa1450720:intron 60.0%
ATGGCGAGGTTCCTAAGGCG+AGG - tig0033043:1426-1445 Msa1450720:CDS 60.0%
GAGAGCGGTGGAGAAGCTAG+CGG - tig0033043:1460-1479 Msa1450720:CDS 60.0%
GTAAGGAGGCAGAGCGTGCT+AGG - tig0033043:1537-1556 Msa1450720:intron 60.0%
TATTCCGAAGGGGAGGGCTG+AGG - tig0033043:1586-1605 Msa1450720:intron 60.0%
AGTGGGGAGGGGTGAAGGAT+AGG + tig0033043:5146-5165 None:intergenic 60.0%
GCATTAGTGGGGAGGGGTGA+AGG + tig0033043:5151-5170 None:intergenic 60.0%
CCCTCCCCACTAATGCTGCA+TGG - tig0033043:5155-5174 Msa1450720:intron 60.0%
GCCATGCAGCATTAGTGGGG+AGG + tig0033043:5159-5178 None:intergenic 60.0%
ATGCTATGGGGGGAAAGGGG+GGG + tig0033043:5228-5247 None:intergenic 60.0%
GAGGCTTCATCTGGGGAGCT+AGG - tig0033043:5790-5809 Msa1450720:CDS 60.0%
GGTTACTCTCTTGCCGCGGG+TGG - tig0033043:1166-1185 Msa1450720:intron 65.0%
TGCCGCGGGTGGATCAGTTG+TGG - tig0033043:1177-1196 Msa1450720:intron 65.0%
TTGGCAATGTCGCTGGGGCG+AGG - tig0033043:1228-1247 Msa1450720:intron 65.0%
TGCTATGGGGGGAAAGGGGG+GGG + tig0033043:5227-5246 None:intergenic 65.0%
CAATGTCGCTGGGGCGAGGC+AGG - tig0033043:1232-1251 Msa1450720:intron 70.0%
TATGGGGGGAAAGGGGGGGG+GGG + tig0033043:5224-5243 None:intergenic 70.0%
CTATGGGGGGAAAGGGGGGG+GGG + tig0033043:5225-5244 None:intergenic 70.0%
GCTATGGGGGGAAAGGGGGG+GGG + tig0033043:5226-5245 None:intergenic 70.0%
GGGGGGGGGGGGGAGTGAAT+TGG + tig0033043:5212-5231 None:intergenic 75.0%
ATGGGGGGAAAGGGGGGGGG+GGG + tig0033043:5223-5242 None:intergenic 75.0%
! TGGGGGGAAAGGGGGGGGGG+GGG + tig0033043:5222-5241 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0033043 gene 646 6583 646 ID=Msa1450720;Name=Msa1450720
tig0033043 mRNA 646 6583 646 ID=Msa1450720-mRNA-1;Parent=Msa1450720;Name=Msa1450720-mRNA-1;_AED=0.05;_eAED=0.05;_QI=68|1|1|1|1|1|7|363|695
tig0033043 exon 646 1123 646 ID=Msa1450720-mRNA-1:exon:17637;Parent=Msa1450720-mRNA-1
tig0033043 exon 1336 1531 1336 ID=Msa1450720-mRNA-1:exon:17636;Parent=Msa1450720-mRNA-1
tig0033043 exon 1644 1833 1644 ID=Msa1450720-mRNA-1:exon:17635;Parent=Msa1450720-mRNA-1
tig0033043 exon 2187 2405 2187 ID=Msa1450720-mRNA-1:exon:17634;Parent=Msa1450720-mRNA-1
tig0033043 exon 2502 2646 2502 ID=Msa1450720-mRNA-1:exon:17633;Parent=Msa1450720-mRNA-1
tig0033043 exon 5190 5255 5190 ID=Msa1450720-mRNA-1:exon:17632;Parent=Msa1450720-mRNA-1
tig0033043 exon 5359 6583 5359 ID=Msa1450720-mRNA-1:exon:17631;Parent=Msa1450720-mRNA-1
tig0033043 five_prime_UTR 6516 6583 6516 ID=Msa1450720-mRNA-1:five_prime_utr;Parent=Msa1450720-mRNA-1
tig0033043 CDS 5359 6515 5359 ID=Msa1450720-mRNA-1:cds;Parent=Msa1450720-mRNA-1
tig0033043 CDS 5190 5255 5190 ID=Msa1450720-mRNA-1:cds;Parent=Msa1450720-mRNA-1
tig0033043 CDS 2502 2646 2502 ID=Msa1450720-mRNA-1:cds;Parent=Msa1450720-mRNA-1
tig0033043 CDS 2187 2405 2187 ID=Msa1450720-mRNA-1:cds;Parent=Msa1450720-mRNA-1
tig0033043 CDS 1644 1833 1644 ID=Msa1450720-mRNA-1:cds;Parent=Msa1450720-mRNA-1
tig0033043 CDS 1336 1531 1336 ID=Msa1450720-mRNA-1:cds;Parent=Msa1450720-mRNA-1
tig0033043 CDS 1009 1123 1009 ID=Msa1450720-mRNA-1:cds;Parent=Msa1450720-mRNA-1
tig0033043 three_prime_UTR 646 1008 646 ID=Msa1450720-mRNA-1:three_prime_utr;Parent=Msa1450720-mRNA-1
Gene Sequence

>Msa1450720

ATGTCTTCTTCCAAAGATGCAGACCCAACCCTAGGTTATCTCACTCGAAAAGACACCGAAGTCAAGCTTCCACGTCCAACTAGGGTTAAGAACAAAACCCCCGCTCCAATTCAAATCACAGCGGAGCAAATTCTTCGTGAAGCTAGGGAGCGTCAAGAAGCTGAGATCCGTCCTCCGAAACAGAAAATCACCGATTCAACCGAACTCGGCGAGTATCGTCTCCGGAAAAGAAAGGAATTCGAGGATTTAATCCGGAGAGTTCGGTGGAATGTCAGTGTTTGGATTAAGTATGCACAGTGGGAAGAGTCGCAGAAGGATTTTACACGTGCGCGTTCGGTTTGGGAACGAGCATTGGAAGTTGATTATAAGAATCATACTCTGTGGTTGAAGTATGCTGAAGTTGAGATGAAGAATAAGTTTATTAATCATGCGAGGAATGTTTGGGATCGTGCGGTTACTCTCTTGCCGCGGGTGGATCAGTTGTGGTATAAGTATATTCATATGGAGGAGATGCTTGGCAATGTCGCTGGGGCGAGGCAGGTTTTCGAGAGATGGATGAAATGGATGCCGGATCAGCAAGGATGGTTATCTTATATAAAATTTGAGCTGAGATATAACGAGATTGAACGAGCGAGAGGGATTTTCGAGAGATTTGTTTTGTGTCATCCTAGGGTTGGTGCTTGGATACGCTATGCGAAGTTTGAGATGAAGAATGGCGAGGTTCCTAAGGCGAGGAATGTTTATGAGAGAGCGGTGGAGAAGCTAGCGGATGATGAGGAAGCAGAGCTGCTTTTTGTGGCGTTTGCGGAGTTTGAGGAAAGGTGTAAGGAGGCAGAGCGTGCTAGGTGTATTTATAAATTTGCACTTGATCATATTCCGAAGGGGAGGGCTGAGGATTTGTACCGGAAGTTTGTGGCATTTGAGAAACAGTATGGTGATAGGGAAGGGATTGAGGATGCTATTGTTGGGAAGAGAAGGTTTCAGTATGAAGATGAAGTGAGGAAAAATCCGTTGAATTATGATTCGTGGTTTGATTATATAAGATTGGAAGAGAGTGTCGGGAATAAGGAAAGAACTAGGGAGGTTTATGAGAGAGCTATAGCTAATGTTCCTCCAGCTGAGGAGAAGCGATACTGGCAGCGCTATATTTATTTGTGGATTAATTATGCACTCTATGAAGAACTCGATGCTGGAGACATGGAGCGAACAAGAGATGTGTACAAGGAGTGTCTCAACCAGATACCTCACCAGAAGTTCTCATTTGCAAAGATATGGCTTCTAGCAGCCCAGTTTGAAATACGTCAGCTGAATCTCACGGGTGCTCGTCAAATATTAGGGAATGCTATTGGAAAGGCTCCTAAAGATAAGATATTTAAGAAGTATATAGAGATAGAACTGCAGCTTGGTAATATAGATCGATGCAGAAAACTATATGAAAAGTATTTGGAGTGGTCACCTGAAAATTGCTATGCATGGAGCAAGTATGCAGAACTAGAGAGATCTTTAGCTGAGACTGAACGAGCTAGAGCAATATTTGAGCTTGCAATTGCCCAACCAGCATTGGACATGCCTGAGTTGTTGTGGAAGGCATACATTGATTTTGAAACTGCCGAGTGTGAATTTGATAGAGCAAGAGCGCTTTATGAAAGGCTTCTTGATCGAACAAAGCACTTGAAGGTATGGCAGAGCTATGCAGAGTTTGAAGCAACAGCTATAGATGAGAGTTTAGAATTATCGGAACAAGAACAAAAGGAGCAGTGCCTTCAGCGTGCGAGAAAGGTGTTTGAGGATGCTCTAAACCACTTCAGATCATCAGCTCCAGATTTAAAAGAAGAAAGGGCAATGCTATTAGAGAAATGGCTCAACTTGGAGGCTTCATCTGGGGAGCTAGGTGATGTCAGCTTAGTCCAGTCTAAGCTGCCCAAGAAGCTCAAGAAGAGAAGACAAGTTTCTACTGAAGATGGTTCTTCTAGAATGGAAGAATTTATCGACTATCTATTCCCCGAGGAAACACATTCAACCAATCTCAAGATCATGGAAGCCGCTTACAAATGGAAGAAGCAAAAATTGTCTAATGCTGATGAATAA

Protein sequence

>Msa1450720

MSSSKDADPTLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDSTELGEYRLRKRKEFEDLIRRVRWNVSVWIKYAQWEESQKDFTRARSVWERALEVDYKNHTLWLKYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQVFERWMKWMPDQQGWLSYIKFELRYNEIERARGIFERFVLCHPRVGAWIRYAKFEMKNGEVPKARNVYERAVEKLADDEEAELLFVAFAEFEERCKEAERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWFDYIRLEESVGNKERTREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYKECLNQIPHQKFSFAKIWLLAAQFEIRQLNLTGARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWSKYAELERSLAETERARAIFELAIAQPALDMPELLWKAYIDFETAECEFDRARALYERLLDRTKHLKVWQSYAEFEATAIDESLELSEQEQKEQCLQRARKVFEDALNHFRSSAPDLKEERAMLLEKWLNLEASSGELGDVSLVQSKLPKKLKKRRQVSTEDGSSRMEEFIDYLFPEETHSTNLKIMEAAYKWKKQKLSNADE*