AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1443310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1443310 MtrunA17_Chr2g0277001 95.016 943 34 4 60 997 1 935 0.0 1675
Msa1443310 MtrunA17_Chr7g0275381 93.092 941 57 7 60 997 1 936 0.0 1667
Msa1443310 MtrunA17_Chr1g0155771 94.569 939 46 4 60 997 1 935 0.0 1641
Msa1443310 MtrunA17_Chr6g0468211 56.655 586 141 10 320 901 62 538 0.0 565
Msa1443310 MtrunA17_Chr2g0316781 51.852 405 49 7 225 628 12 271 5.78e-113 349
Msa1443310 MtrunA17_Chr2g0303811 81.290 155 29 0 626 780 1 155 5.75e-85 270
Msa1443310 MtrunA17_Chr6g0468421 57.752 258 41 3 383 640 1 190 2.56e-83 267
Msa1443310 MtrunA17_Chr6g0468011 60.606 198 47 4 320 515 12 180 1.05e-64 216
Msa1443310 MtrunA17_Chr6g0468411 74.815 135 30 1 617 747 5 139 2.21e-62 209
Msa1443310 MtrunA17_Chr2g0303821 61.468 109 41 1 788 895 1 109 2.57e-37 137
Msa1443310 MtrunA17_Chr6g0467931 65.347 101 33 2 787 885 1 101 5.60e-31 117
Msa1443310 MtrunA17_Chr6g0467941 47.222 144 24 2 604 747 1 92 1.18e-30 116
Msa1443310 MtrunA17_Chr6g0468001 57.658 111 25 3 787 895 1 91 2.21e-28 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1443310 AT3G56150.2 66.490 946 263 14 60 997 1 900 0.0 1154
Msa1443310 AT3G56150.1 66.490 946 263 14 60 997 1 900 0.0 1154
Msa1443310 AT3G22860.1 63.474 616 206 6 304 909 181 787 0.0 787

Find 280 sgRNAs with CRISPR-Local

Find 425 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATGTTTGTTCTGATTTA+TGG 0.039660 tig0030416:+42224 Msa1443310:three_prime_UTR
TCTGGTTGTTATGAGAATTT+AGG 0.156316 tig0030416:-38153 None:intergenic
CAAGAAGTTCAAAGAGATTC+TGG 0.204715 tig0030416:+39099 Msa1443310:CDS
GATTTCAGATGAAATTTCTT+TGG 0.216565 tig0030416:+42164 Msa1443310:three_prime_UTR
GCACTGTAAGCCAGAGATTT+TGG 0.217294 tig0030416:+42356 Msa1443310:three_prime_UTR
GCTGGGACTCATCTTCTTCT+TGG 0.219134 tig0030416:-38735 None:intergenic
TGTAAAGATTAGGGATCTTT+TGG 0.232109 tig0030416:-38655 None:intergenic
ACATGATCCCTGACAGTTTC+AGG 0.235192 tig0030416:-41314 None:intergenic
TGTTTGTCTGAACTTTATTC+TGG 0.235265 tig0030416:+40072 Msa1443310:CDS
CAATAATGTCAAAGGCCTTC+TGG 0.238181 tig0030416:-41373 None:intergenic
GGTTTCCGCGCCACAAGTTC+CGG 0.248793 tig0030416:-39772 None:intergenic
GCCACAAGGGTTCTTATTAA+TGG 0.250263 tig0030416:+41344 Msa1443310:CDS
AACCAATGGCTTCGAGATTC+TGG 0.262577 tig0030416:+38179 Msa1443310:CDS
TGCTCAGGCTTCTGCTAATA+AGG 0.263529 tig0030416:+38709 Msa1443310:CDS
CTGGTTGTTATGAGAATTTA+GGG 0.266616 tig0030416:-38152 None:intergenic
GGAAAATAGCAGGACCTTAA+TGG 0.268698 tig0030416:+39804 Msa1443310:CDS
GTTGAAGGCTTTGGCATTGC+TGG 0.280294 tig0030416:-38753 None:intergenic
GAATCATCAACCTTTATGTT+TGG 0.286060 tig0030416:-39343 None:intergenic
TTTGGTTTGTAGGTATCTAT+TGG 0.296703 tig0030416:-38435 None:intergenic
CAACAACGGGTTTGGTTTGT+AGG 0.300152 tig0030416:-38445 None:intergenic
TATGCACTTAATCTAGATTC+TGG 0.301092 tig0030416:+42142 Msa1443310:three_prime_UTR
TCCAGTTCCCTTCCTGCCCC+TGG 0.302069 tig0030416:-39125 None:intergenic
ATCATATGATTCTTTCAGTT+TGG 0.303868 tig0030416:+41505 Msa1443310:CDS
CTTCATTGAGTTGAAGGCTT+TGG 0.318286 tig0030416:-38762 None:intergenic
CAGATTTAACAACACGCTTT+TGG 0.326666 tig0030416:-38490 None:intergenic
TTATGAAGCAACGAGAAAAT+TGG 0.328433 tig0030416:+39657 Msa1443310:CDS
GAGATGAGTGAGGAGTTAAA+AGG 0.329554 tig0030416:+39709 Msa1443310:CDS
GGAGGCGGCTATCAGAATTC+AGG 0.346447 tig0030416:+41974 Msa1443310:CDS
AATCATCAACCTTTATGTTT+GGG 0.349179 tig0030416:-39342 None:intergenic
GATTATGCCGCTGCAGCTGC+TGG 0.352272 tig0030416:+41794 Msa1443310:CDS
CCGGGATTTAGTACCTGTTC+TGG 0.353112 tig0030416:-40156 None:intergenic
TCTATTGGCTGTATTGTTGT+TGG 0.355511 tig0030416:-38420 None:intergenic
GGTGGTAGTGGAACGTCTTC+AGG 0.355830 tig0030416:+41818 Msa1443310:CDS
TAGCAAGAAAGACAGGCTTT+TGG 0.359604 tig0030416:+39027 Msa1443310:CDS
TACCCGCATGGTTAGCCTTA+GGG 0.360330 tig0030416:+42045 Msa1443310:CDS
ACTCTCAAGGGTGCAGGCTT+TGG 0.361470 tig0030416:+41658 Msa1443310:CDS
ATTTCAGATGAAATTTCTTT+GGG 0.372007 tig0030416:+42165 Msa1443310:three_prime_UTR
ATGATGAAGAGAAGGTAAAT+AGG 0.373547 tig0030416:-41487 None:intergenic
CAATGCTTTCAAGATATTCC+TGG 0.380146 tig0030416:-39564 None:intergenic
AGATTTATATGCATATGATA+TGG 0.383704 tig0030416:-41140 None:intergenic
ATGACCGTAGAGGGAGATAA+TGG 0.387791 tig0030416:+39685 Msa1443310:CDS
GGCGCGGAAACCCACCTTCC+CGG 0.387923 tig0030416:+39783 Msa1443310:CDS
GCAAGCTGGGATCAGCCAAC+TGG 0.390557 tig0030416:+41611 Msa1443310:CDS
TCCGGCTTCCTGAGCTGATC+AGG 0.393176 tig0030416:-38920 None:intergenic
AGATTTCAAAGCTTCTTCTA+AGG 0.393340 tig0030416:+39588 Msa1443310:CDS
CTATTGGCTGTATTGTTGTT+GGG 0.393873 tig0030416:-38419 None:intergenic
GCCTTGCCTTGTTTGAGAAT+AGG 0.394600 tig0030416:-41861 None:intergenic
CTACCCGCATGGTTAGCCTT+AGG 0.397357 tig0030416:+42044 Msa1443310:CDS
GCCAGGGGCAGGAAGGGAAC+TGG 0.399839 tig0030416:+39124 Msa1443310:CDS
TGATGATGGCGATGCTCCTT+GGG 0.400541 tig0030416:+38994 Msa1443310:CDS
GCTCAGTTTGATGTTAATCC+AGG 0.401276 tig0030416:+39238 Msa1443310:CDS
TCGAAGCCATTGGTTTAGTC+TGG 0.401988 tig0030416:-38171 None:intergenic
AGAGCCTTGATGTAAAGATT+AGG 0.402756 tig0030416:-38665 None:intergenic
GTGATGATGGCGATGCTCCT+TGG 0.404468 tig0030416:+38993 Msa1443310:CDS
TAGAACTCCACTCTCTTCTT+CGG 0.408017 tig0030416:-37088 None:intergenic
GCTTGAAGATTTCCTTGCTC+AGG 0.408980 tig0030416:+38694 Msa1443310:CDS
CCGGTCCTCCTGAAACTGTC+AGG 0.411793 tig0030416:+41306 Msa1443310:CDS
ATGTAAGATGCACTGATTCC+AGG 0.412950 tig0030416:-41169 None:intergenic
GAGCCTTGATGTAAAGATTA+GGG 0.415850 tig0030416:-38664 None:intergenic
ATGACGGACCCATTCATGTC+TGG 0.416244 tig0030416:+39407 Msa1443310:CDS
GCCGCTGCAGCTGCTGGTGG+TGG 0.418701 tig0030416:+41800 Msa1443310:CDS
GTTTCCGCGCCACAAGTTCC+GGG 0.419096 tig0030416:-39771 None:intergenic
TTAAGTGCATAATAATAAAC+TGG 0.419627 tig0030416:-42130 None:intergenic
TAGATAATTTCTCAGTCAAC+TGG 0.421894 tig0030416:-41685 None:intergenic
TGATACTAACACATCCATTA+AGG 0.425287 tig0030416:-39818 None:intergenic
GCAGCTGCTGGTGGTGGTAG+TGG 0.425549 tig0030416:+41806 Msa1443310:CDS
AATGAGTTCAACCCTCTTCA+AGG 0.428889 tig0030416:-39614 None:intergenic
ACTGTCATCAACAACGGGTT+TGG 0.429963 tig0030416:-38453 None:intergenic
AACAGGGCTATGTCACAGTT+AGG 0.435704 tig0030416:+40006 Msa1443310:CDS
TTGAAGGCTTTGGCATTGCT+GGG 0.436119 tig0030416:-38752 None:intergenic
GAAACTTGTGCCAAAATCTC+TGG 0.436609 tig0030416:-42366 None:intergenic
CGTGCAGCACCCAAACATAA+AGG 0.438376 tig0030416:+39333 Msa1443310:CDS
TGCCCATCTCTTCGCCTTGG+AGG 0.438441 tig0030416:-41770 None:intergenic
TCAAAGAGATTCTGGAAGCC+AGG 0.439840 tig0030416:+39107 Msa1443310:CDS
GCATATAAATCTTGAGCTCC+TGG 0.445116 tig0030416:+41151 Msa1443310:CDS
GGCATATGCCCACTGAGGCC+TGG 0.449256 tig0030416:-39256 None:intergenic
ATGAGGAGCTTCATGCAAGC+TGG 0.457408 tig0030416:+41597 Msa1443310:CDS
TTCAGTCAAGCTGGTGGGAG+TGG 0.458684 tig0030416:+41923 Msa1443310:CDS
CAGAACAAACATTGGGAGCT+GGG 0.459982 tig0030416:-42216 None:intergenic
ATGAGAATGAAACTAAGAAA+GGG 0.464510 tig0030416:+39377 Msa1443310:CDS
TCAGAATCCGACACGGGCTC+CGG 0.466090 tig0030416:-38938 None:intergenic
AATTATCTTTCAGGAAAGGT+TGG 0.471050 tig0030416:+41100 Msa1443310:intron
TCAGAAATGTTGAACTCTCA+AGG 0.471342 tig0030416:+41645 Msa1443310:CDS
TCCTGCCCATCTCTTCGCCT+TGG 0.472750 tig0030416:-41773 None:intergenic
TCTAGAGGACGGGGAACGAT+TGG 0.474394 tig0030416:+41953 Msa1443310:CDS
AACTGTCAGGGATCATGTTA+TGG 0.475362 tig0030416:+41319 Msa1443310:CDS
TCTTACATCTGCTATGCTGC+TGG 0.477105 tig0030416:+41184 Msa1443310:CDS
TGAACATTGGCTGCCATGTT+GGG 0.479489 tig0030416:-41212 None:intergenic
TAATAAACTGGTAAAAGAAA+AGG 0.479905 tig0030416:-42118 None:intergenic
AGCTGCAGTTTCTTCTTCAT+CGG 0.482972 tig0030416:+38096 Msa1443310:CDS
GGGAACTGGAAGGTTTGAAC+AGG 0.485450 tig0030416:+39138 Msa1443310:CDS
GATTCTGAAACTTCTGAGCT+TGG 0.486351 tig0030416:+38953 Msa1443310:CDS
TTGTTGGGTTCATCATCAAC+GGG 0.486651 tig0030416:-38404 None:intergenic
TAAGTTGCCCCAGACATGAA+TGG 0.490965 tig0030416:-39416 None:intergenic
TCATGAAAAGACTCCAGAAC+AGG 0.493182 tig0030416:+40143 Msa1443310:CDS
GTGAATATGTTGAGAGACTC+AGG 0.493281 tig0030416:+39506 Msa1443310:CDS
CAGAATTCAGGGAGGACTCA+AGG 0.493339 tig0030416:+41986 Msa1443310:CDS
GAAGCAAGGTTAGGCGGCGG+TGG 0.493372 tig0030416:+41737 Msa1443310:CDS
GTTGTTGGGTTCATCATCAA+CGG 0.494263 tig0030416:-38405 None:intergenic
TCGTCACTGTCATCAACAAC+GGG 0.495380 tig0030416:-38458 None:intergenic
TGACATTATTGCATCTCTTG+AGG 0.496021 tig0030416:+41385 Msa1443310:CDS
TCAGAACAAACATTGGGAGC+TGG 0.496440 tig0030416:-42217 None:intergenic
CATTGGGAGCTGGGAGAGGA+GGG 0.496780 tig0030416:-42207 None:intergenic
TGACGGACCCATTCATGTCT+GGG 0.497542 tig0030416:+39408 Msa1443310:CDS
GGAAAAGGATGACGAGGATG+AGG 0.497694 tig0030416:+38859 Msa1443310:CDS
CTTGGTAATGACAGGCCTCC+TGG 0.498069 tig0030416:+38971 Msa1443310:CDS
CAGGAATATCTTGAAAGCAT+TGG 0.498525 tig0030416:+39565 Msa1443310:CDS
TGACAGACACCGTGAGATAG+AGG 0.498640 tig0030416:+37057 Msa1443310:CDS
TTATTCTGGTGGACGGGTGA+AGG 0.499453 tig0030416:+40086 Msa1443310:CDS
AAATCAAGGAGGAGGCGCTT+AGG 0.499787 tig0030416:+41459 Msa1443310:CDS
CATAAATCAGAACAAACATT+GGG 0.500452 tig0030416:-42223 None:intergenic
ATGAACATTGGCTGCCATGT+TGG 0.505127 tig0030416:-41213 None:intergenic
CTGGAAGCCAGGGGCAGGAA+GGG 0.505830 tig0030416:+39118 Msa1443310:CDS
TCAACGGGTTCAGTATCGTT+AGG 0.505992 tig0030416:-38389 None:intergenic
ACATTGGGAGCTGGGAGAGG+AGG 0.506596 tig0030416:-42208 None:intergenic
ATGTTAATCCAGGCCTCAGT+GGG 0.508312 tig0030416:+39248 Msa1443310:CDS
ACCCGCATGGTTAGCCTTAG+GGG 0.508509 tig0030416:+42046 Msa1443310:CDS
CAGAAATGTTGAACTCTCAA+GGG 0.508616 tig0030416:+41646 Msa1443310:CDS
AGATTCTGGAAGCCAGGGGC+AGG 0.509743 tig0030416:+39113 Msa1443310:CDS
AGAATTCAGGGAGGACTCAA+GGG 0.510031 tig0030416:+41987 Msa1443310:CDS
AGAATCTGCAGCTTCTGAGC+AGG 0.511073 tig0030416:-39199 None:intergenic
ATCCTTCAGCATTTCTAGCA+CGG 0.511752 tig0030416:-41435 None:intergenic
AAGTTGCCCCAGACATGAAT+GGG 0.512091 tig0030416:-39415 None:intergenic
GGCAGTGGACGTACAGGATA+CGG 0.514533 tig0030416:+41881 Msa1443310:CDS
GATGAGAATGAAACTAAGAA+AGG 0.515170 tig0030416:+39376 Msa1443310:CDS
TCCAAGGCGAAGAGATGGGC+AGG 0.515359 tig0030416:+41772 Msa1443310:CDS
AAGGTTAGGCGGCGGTGGGT+TGG 0.516660 tig0030416:+41742 Msa1443310:CDS
ACCTGATCAGCTCAGGAAGC+CGG 0.516893 tig0030416:+38919 Msa1443310:CDS
TCATTGAACCTGATCAGCTC+AGG 0.519230 tig0030416:+38912 Msa1443310:CDS
TGCTCCGTTTGTTGTTACCC+CGG 0.519622 tig0030416:+39753 Msa1443310:CDS
GATCCCTAATCTTTACATCA+AGG 0.521376 tig0030416:+38661 Msa1443310:CDS
GTTCTTCCTCCTCTATCTCA+CGG 0.521562 tig0030416:-37066 None:intergenic
TGGCGGCTATTCTAGAGGAC+GGG 0.522471 tig0030416:+41943 Msa1443310:CDS
AGGACTTGATTATCAAATGT+AGG 0.523141 tig0030416:+38816 Msa1443310:CDS
TGTTGAACTCTCAAGGGTGC+AGG 0.524552 tig0030416:+41652 Msa1443310:CDS
GAGGCGGCTATCAGAATTCA+GGG 0.525246 tig0030416:+41975 Msa1443310:CDS
CTCAACATATTCACGTGTGT+GGG 0.525787 tig0030416:-39497 None:intergenic
GTGGGTTGGATCTGCCTCCA+AGG 0.528953 tig0030416:+41756 Msa1443310:CDS
TCCCCTAAGGCTAACCATGC+GGG 0.529790 tig0030416:-42047 None:intergenic
TGTTCTTGCACAGAATGTCC+AGG 0.530188 tig0030416:+39546 Msa1443310:CDS
CTGAACTTTATTCTGGTGGA+CGG 0.530497 tig0030416:+40079 Msa1443310:CDS
AAAAGCTTAGCAAGAAAGAC+AGG 0.531266 tig0030416:+39020 Msa1443310:CDS
CTCTCCATTATCTCCCTCTA+CGG 0.531803 tig0030416:-39689 None:intergenic
GTCCAGAATCTCGAAGCCAT+TGG 0.533546 tig0030416:-38181 None:intergenic
TTTGTTTCTCACTGACCTCA+AGG 0.534520 tig0030416:-41277 None:intergenic
GGGCTGGTTTCTGAAGCGCA+TGG 0.535363 tig0030416:+40048 Msa1443310:CDS
CCACCTTCCCGGAAAATAGC+AGG 0.535658 tig0030416:+39794 Msa1443310:CDS
GACTCATAAGCAACAGATCA+CGG 0.536368 tig0030416:-39933 None:intergenic
AGAGGACGGGGAACGATTGG+AGG 0.536414 tig0030416:+41956 Msa1443310:CDS
GACAGGCCTCCTGGTGATGA+TGG 0.536973 tig0030416:+38980 Msa1443310:CDS
ATGCTATCAAGATCAATGAC+TGG 0.537887 tig0030416:+38564 Msa1443310:CDS
TGTTGTTACCCCGGAACTTG+TGG 0.539965 tig0030416:+39762 Msa1443310:CDS
CTGCCTCCAAGGCGAAGAGA+TGG 0.540348 tig0030416:+41767 Msa1443310:CDS
CAAACATTGGGAGCTGGGAG+AGG 0.541139 tig0030416:-42211 None:intergenic
TTGTCTGAACTTTATTCTGG+TGG 0.542410 tig0030416:+40075 Msa1443310:CDS
AGGCAAGGCAGTGGACGTAC+AGG 0.542622 tig0030416:+41875 Msa1443310:CDS
CAAGCTGGGATCAGCCAACT+GGG 0.543584 tig0030416:+41612 Msa1443310:CDS
GTGGAACGTCTTCAGGTGGC+AGG 0.543676 tig0030416:+41825 Msa1443310:CDS
AGTTCCGGGGTAACAACAAA+CGG 0.544060 tig0030416:-39757 None:intergenic
TGAGGAGCTTCATGCAAGCT+GGG 0.544437 tig0030416:+41598 Msa1443310:CDS
TAGGGAGAGTCCTGAGAGTG+AGG 0.545078 tig0030416:+38835 Msa1443310:CDS
AATGCTGAAGGATAAAATCA+AGG 0.545420 tig0030416:+41445 Msa1443310:CDS
TATGCCGCTGCAGCTGCTGG+TGG 0.547820 tig0030416:+41797 Msa1443310:CDS
GGACTTGATTATCAAATGTA+GGG 0.548379 tig0030416:+38817 Msa1443310:CDS
TCCTATTCTCAAACAAGGCA+AGG 0.549766 tig0030416:+41860 Msa1443310:CDS
CTTCTGAGCTTGGTAATGAC+AGG 0.550457 tig0030416:+38963 Msa1443310:CDS
CATAAAGGTTGATGATTCTG+TGG 0.552363 tig0030416:+39348 Msa1443310:CDS
CCATAAATCAGAACAAACAT+TGG 0.552425 tig0030416:-42224 None:intergenic
AGAATCATATGATGAAGAGA+AGG 0.556503 tig0030416:-41495 None:intergenic
CCTGACAGTTTCAGGAGGAC+CGG 0.559804 tig0030416:-41306 None:intergenic
CTTCTAAGGTAGCCTTGAAG+AGG 0.561694 tig0030416:+39602 Msa1443310:CDS
TCTCAAACAAGGCAAGGCAG+TGG 0.563066 tig0030416:+41866 Msa1443310:CDS
CAAAGAGATTCTGGAAGCCA+GGG 0.563451 tig0030416:+39108 Msa1443310:CDS
GGGGTAACAACAAACGGAGC+AGG 0.564444 tig0030416:-39751 None:intergenic
TCTGGAAGCCAGGGGCAGGA+AGG 0.564829 tig0030416:+39117 Msa1443310:CDS
AAGAGATGCAATAATGTCAA+AGG 0.567228 tig0030416:-41381 None:intergenic
GCATTATCGTTCAGTCAAGC+TGG 0.568957 tig0030416:+41914 Msa1443310:CDS
GTGTCCCATGTGATCTCACT+AGG 0.569429 tig0030416:-39070 None:intergenic
GGACGGGGAACGATTGGAGG+CGG 0.571631 tig0030416:+41959 Msa1443310:CDS
GGAGCATCGCCATCATCACC+AGG 0.573601 tig0030416:-38989 None:intergenic
TGCCTCCAAGGCGAAGAGAT+GGG 0.574902 tig0030416:+41768 Msa1443310:CDS
ACGCTTAGCATCATGAACAT+TGG 0.575475 tig0030416:-41225 None:intergenic
ATCATGTTATGGCTGCCACA+AGG 0.575690 tig0030416:+41330 Msa1443310:CDS
CACTGACCTCAAGGAAGCGG+CGG 0.575932 tig0030416:-41268 None:intergenic
GGGAGAGTCCTGAGAGTGAG+GGG 0.577170 tig0030416:+38837 Msa1443310:CDS
GTATCACTGATATACAAATA+CGG 0.579558 tig0030416:+39835 Msa1443310:CDS
TTATTGCATCTCTTGAGGTG+TGG 0.579762 tig0030416:+41390 Msa1443310:CDS
TCTCAACATATTCACGTGTG+TGG 0.579942 tig0030416:-39498 None:intergenic
TGAACTTTATTCTGGTGGAC+GGG 0.580196 tig0030416:+40080 Msa1443310:CDS
AGTGAGAAACAAACATTCAC+CGG 0.580815 tig0030416:+41287 Msa1443310:CDS
CTGAAAATAATGCACCCAGT+TGG 0.581929 tig0030416:-41626 None:intergenic
CGGTCCTCCTGAAACTGTCA+GGG 0.584556 tig0030416:+41307 Msa1443310:CDS
AAAAGCCTAGTGAGATCACA+TGG 0.585381 tig0030416:+39065 Msa1443310:CDS
AGGTTCAATGATCTCATCAT+CGG 0.587424 tig0030416:-38900 None:intergenic
GTTGCTTCATAAACCTCATG+CGG 0.588345 tig0030416:-39646 None:intergenic
GCTACAGAAGCAAGGTTAGG+CGG 0.590150 tig0030416:+41731 Msa1443310:CDS
TGAGAATGAAACTAAGAAAG+GGG 0.591503 tig0030416:+39378 Msa1443310:CDS
GTCAAGCACGAACTCCCCTA+AGG 0.592556 tig0030416:-42060 None:intergenic
GGTTCATCATCAATATCAGT+GGG 0.592619 tig0030416:-38368 None:intergenic
ACCACCACCAGCAGCTGCAG+CGG 0.592682 tig0030416:-41801 None:intergenic
AGGTTCATCATCAATATCAG+TGG 0.593036 tig0030416:-38369 None:intergenic
TTCTAAGGTAGCCTTGAAGA+GGG 0.593307 tig0030416:+39603 Msa1443310:CDS
AGAGCTACAGAAGCAAGGTT+AGG 0.594295 tig0030416:+41728 Msa1443310:CDS
GTGAAGGAATTGCTTGCGCA+AGG 0.594439 tig0030416:+40102 Msa1443310:CDS
ACTCATAAGCAACAGATCAC+GGG 0.595404 tig0030416:-39932 None:intergenic
AGATAATGGAGAGATGAGTG+AGG 0.595500 tig0030416:+39699 Msa1443310:CDS
AAGCAAGGTTAGGCGGCGGT+GGG 0.595912 tig0030416:+41738 Msa1443310:CDS
CATTTACTACAAACCGCATG+AGG 0.596878 tig0030416:+39633 Msa1443310:CDS
TGCTATCAAGATCAATGACT+GGG 0.597590 tig0030416:+38565 Msa1443310:CDS
AGGAAAGGTTGGAAAGAAGA+CGG 0.598493 tig0030416:+41111 Msa1443310:intron
GGGAGTGGCGGCTATTCTAG+AGG 0.598572 tig0030416:+41938 Msa1443310:CDS
TTTCCGCGCCACAAGTTCCG+GGG 0.599206 tig0030416:-39770 None:intergenic
GGAAGAACCGAAGAAGAGAG+TGG 0.599220 tig0030416:+37081 Msa1443310:CDS
AGGGAGAGTCCTGAGAGTGA+GGG 0.600175 tig0030416:+38836 Msa1443310:CDS
TTGGCTGAGATGACCGTAGA+GGG 0.603596 tig0030416:+39676 Msa1443310:CDS
ATGAAAGAGCTACAGAAGCA+AGG 0.604351 tig0030416:+41723 Msa1443310:CDS
AGTCAAGCTGGTGGGAGTGG+CGG 0.604909 tig0030416:+41926 Msa1443310:CDS
GAATTTCCGCCGCTTCCTTG+AGG 0.606084 tig0030416:+41262 Msa1443310:CDS
GAAGGATAAAATCAAGGAGG+AGG 0.606776 tig0030416:+41451 Msa1443310:CDS
GTGGCGGCTATTCTAGAGGA+CGG 0.606807 tig0030416:+41942 Msa1443310:CDS
CAGGAAGCCGGAGCCCGTGT+CGG 0.608070 tig0030416:+38931 Msa1443310:CDS
CGTAGATACTTCTACCCGCA+TGG 0.610484 tig0030416:+42033 Msa1443310:CDS
GAATTCAGGGAGGACTCAAG+GGG 0.615559 tig0030416:+41988 Msa1443310:CDS
GGCGGCTATTCTAGAGGACG+GGG 0.620265 tig0030416:+41944 Msa1443310:CDS
ACTTGTCCTATTCTCAAACA+AGG 0.620485 tig0030416:+41855 Msa1443310:CDS
TCGGGAAAGTTGATGAGTGA+CGG 0.620919 tig0030416:+37028 None:intergenic
CTTCGTGTTAGTTTGTTGTG+TGG 0.622006 tig0030416:+42310 Msa1443310:three_prime_UTR
ACAGAAGCAAGGTTAGGCGG+CGG 0.622574 tig0030416:+41734 Msa1443310:CDS
TAACAACCAGACTAAACCAA+TGG 0.622757 tig0030416:+38165 Msa1443310:CDS
GATGACAGTGACGACGATGA+TGG 0.623470 tig0030416:+38467 Msa1443310:CDS
TCCATTAATAAGAACCCTTG+TGG 0.625098 tig0030416:-41345 None:intergenic
TATTAGCAGAAGCCTGAGCA+AGG 0.625753 tig0030416:-38706 None:intergenic
TCATGTTATGGCTGCCACAA+GGG 0.627218 tig0030416:+41331 Msa1443310:CDS
TCTCACTGACCTCAAGGAAG+CGG 0.631213 tig0030416:-41271 None:intergenic
GTCGTCACTGTCATCAACAA+CGG 0.635755 tig0030416:-38459 None:intergenic
TATCGTTCAGTCAAGCTGGT+GGG 0.636549 tig0030416:+41918 Msa1443310:CDS
GGACGTACAGGATACGGTGG+AGG 0.637438 tig0030416:+41887 Msa1443310:CDS
GAACGTCTTCAGGTGGCAGG+TGG 0.637601 tig0030416:+41828 Msa1443310:CDS
TTATCGTTCAGTCAAGCTGG+TGG 0.641328 tig0030416:+41917 Msa1443310:CDS
AAGAAAGGGGATGACTATGA+CGG 0.642172 tig0030416:+39391 Msa1443310:CDS
GTGTTCATAGTATTGTCAGT+AGG 0.642718 tig0030416:+41564 Msa1443310:CDS
TCAACATATTCACGTGTGTG+GGG 0.645878 tig0030416:-39496 None:intergenic
CACCGTGCTAGAAATGCTGA+AGG 0.646843 tig0030416:+41433 Msa1443310:CDS
GGCTTCGAGATTCTGGACAC+AGG 0.648433 tig0030416:+38186 Msa1443310:CDS
GAAGTTTCAGAATCCGACAC+GGG 0.650738 tig0030416:-38944 None:intergenic
TATTAATGGAGATTTCCAGA+AGG 0.655339 tig0030416:+41358 Msa1443310:CDS
AAAATGCGTGCAGAATATGC+TGG 0.655482 tig0030416:+39294 Msa1443310:CDS
GGGGCAGGAAGGGAACTGGA+AGG 0.655940 tig0030416:+39128 Msa1443310:CDS
GCAAGAAAATGTTCACCACA+TGG 0.657602 tig0030416:+39960 Msa1443310:CDS
GGTAGTGGAACGTCTTCAGG+TGG 0.658306 tig0030416:+41821 Msa1443310:CDS
CTCCCCTAAGGCTAACCATG+CGG 0.664230 tig0030416:-42048 None:intergenic
TTACCCCGGAACTTGTGGCG+CGG 0.666773 tig0030416:+39767 Msa1443310:CDS
CAAACTCATCAAGAAGAGCA+TGG 0.667504 tig0030416:-39903 None:intergenic
GATGTTAATCCAGGCCTCAG+TGG 0.669943 tig0030416:+39247 Msa1443310:CDS
CAGTAGGATGATGATCAATG+AGG 0.670922 tig0030416:+41580 Msa1443310:CDS
GCTGCTGGAAGTTCCCAACA+TGG 0.671778 tig0030416:+41199 Msa1443310:CDS
GGAGAGTCCTGAGAGTGAGG+GGG 0.672377 tig0030416:+38838 Msa1443310:CDS
AAAGTTGATGAGTGACGGCG+AGG 0.675317 tig0030416:+37033 None:intergenic
TGTGCAAGAACAACAAACTG+AGG 0.676475 tig0030416:-39535 None:intergenic
GGCATATGCCCATAAATGTG+TGG 0.678845 tig0030416:+39269 Msa1443310:CDS
GACGGACCCATTCATGTCTG+GGG 0.680909 tig0030416:+39409 Msa1443310:CDS
TGAATATGTTGAGAGACTCA+GGG 0.682868 tig0030416:+39507 Msa1443310:CDS
AGAAGTTTCAGAATCCGACA+CGG 0.685846 tig0030416:-38945 None:intergenic
ATTGGCTGAGATGACCGTAG+AGG 0.686209 tig0030416:+39675 Msa1443310:CDS
CTGACAATACTATGAACACG+AGG 0.689117 tig0030416:-41560 None:intergenic
CAGACACCGTGAGATAGAGG+AGG 0.699075 tig0030416:+37060 Msa1443310:CDS
ATTCTTGATCTGATCAACAG+TGG 0.701566 tig0030416:-38543 None:intergenic
AAAGAGATTCTGGAAGCCAG+GGG 0.701656 tig0030416:+39109 Msa1443310:CDS
GCATCGCCATCATCACCAGG+AGG 0.707685 tig0030416:-38986 None:intergenic
TGCGGGTAGAAGTATCTACG+TGG 0.710114 tig0030416:-42030 None:intergenic
TGATCCCTGACAGTTTCAGG+AGG 0.717851 tig0030416:-41311 None:intergenic
GCGGGTAGAAGTATCTACGT+GGG 0.720335 tig0030416:-42029 None:intergenic
AATTCAGGGAGGACTCAAGG+GGG 0.722566 tig0030416:+41989 Msa1443310:CDS
GCTGAAGGATAAAATCAAGG+AGG 0.734791 tig0030416:+41448 Msa1443310:CDS
AAAGCCTAGTGAGATCACAT+GGG 0.747188 tig0030416:+39066 Msa1443310:CDS
GAAGAACAATAAGCAATACG+AGG 0.757858 tig0030416:+38796 Msa1443310:CDS
AGTGGACGTACAGGATACGG+TGG 0.758461 tig0030416:+41884 Msa1443310:CDS
TTATGGGCATATGCCCACTG+AGG 0.770132 tig0030416:-39261 None:intergenic
GCGGCTATCAGAATTCAGGG+AGG 0.799750 tig0030416:+41978 Msa1443310:CDS
TTTGTGTCGAAATGTCCATG+TGG 0.823137 tig0030416:-39975 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTAAAAAAAATATTTTT+TGG - tig0030416:37839-37858 None:intergenic 0.0%
!!! TATAATTATTTTACTTAAAC+AGG - tig0030416:37525-37544 None:intergenic 10.0%
!!! CTTTATTTATAATAAATCAA+TGG + tig0030416:37660-37679 Msa1443310:intron 10.0%
!! ATAGAAATAGAAAAAATAAA+AGG + tig0030416:40333-40352 Msa1443310:intron 10.0%
!!! GTTTTTTTTTTTGTAATTGA+TGG - tig0030416:37202-37221 None:intergenic 15.0%
!! TTATAAATATTACTCATTTG+TGG - tig0030416:37224-37243 None:intergenic 15.0%
!!! TAAATATTTACTGCATTTTA+CGG - tig0030416:37254-37273 None:intergenic 15.0%
!! AAAATGCAGTAAATATTTAT+AGG + tig0030416:37255-37274 Msa1443310:intron 15.0%
!! TTATTATAAATAAAGTCCAA+TGG - tig0030416:37655-37674 None:intergenic 15.0%
!!! GTTTTAGGTTTATTTTAATT+TGG - tig0030416:37729-37748 None:intergenic 15.0%
!!! ATTTAATGTGTATATGTTTT+GGG - tig0030416:37908-37927 None:intergenic 15.0%
!!! AATTTAATGTGTATATGTTT+TGG - tig0030416:37909-37928 None:intergenic 15.0%
!! AAATGTTTATACATAGAATT+TGG - tig0030416:37939-37958 None:intergenic 15.0%
!! TACAATGATATTAGTTAATA+TGG - tig0030416:37973-37992 None:intergenic 15.0%
!! TAACTAATATCATTGTAAAT+TGG + tig0030416:37976-37995 Msa1443310:intron 15.0%
!! CAGAAATTAAATTTGATTAT+TGG + tig0030416:40462-40481 Msa1443310:intron 15.0%
!!! TATTTTCCTTTAATTTTCTA+TGG - tig0030416:40643-40662 None:intergenic 15.0%
!!! TAAATTTTTTTGAATTGAGT+GGG - tig0030416:40714-40733 None:intergenic 15.0%
!!! ATAAATTTTTTTGAATTGAG+TGG - tig0030416:40715-40734 None:intergenic 15.0%
!! AAAAAATTTATTTATGCCAT+TGG + tig0030416:40724-40743 Msa1443310:intron 15.0%
!!! TTGTTAATTTTTTTTCTTGA+GGG + tig0030416:42284-42303 Msa1443310:three_prime_UTR 15.0%
!!! TTATAAAATTGTGGCTTTTA+TGG - tig0030416:37287-37306 None:intergenic 20.0%
!!! CTCTTTCTTTTATAAAATTG+TGG - tig0030416:37296-37315 None:intergenic 20.0%
!! AATGGTATAGATTAAAGATA+GGG - tig0030416:37637-37656 None:intergenic 20.0%
!! TAAACCTAAAACATATACTA+CGG + tig0030416:37737-37756 Msa1443310:intron 20.0%
!!! TTTAATGTGTATATGTTTTG+GGG - tig0030416:37907-37926 None:intergenic 20.0%
!! AATCAATATACGAAAATTCA+CGG - tig0030416:38047-38066 None:intergenic 20.0%
!! ATCTATTTGAAAAAAATAGC+CGG - tig0030416:40178-40197 None:intergenic 20.0%
!! TGTCAATGTAAAGATAAATA+AGG - tig0030416:40382-40401 None:intergenic 20.0%
!! TATAATATTATTGCTCAACT+TGG + tig0030416:40429-40448 Msa1443310:intron 20.0%
!!! TGTTTTTGTTTTTGTTTCTA+AGG + tig0030416:40525-40544 Msa1443310:intron 20.0%
!!! TTTTATTTTCATCTTGTTAC+TGG + tig0030416:40559-40578 Msa1443310:intron 20.0%
!!! TTTATTTTCATCTTGTTACT+GGG + tig0030416:40560-40579 Msa1443310:intron 20.0%
!! TATAAGCCATAGAAAATTAA+AGG + tig0030416:40634-40653 Msa1443310:intron 20.0%
!!! AAATTTTTTTGAATTGAGTG+GGG - tig0030416:40713-40732 None:intergenic 20.0%
!! CTATTCTTTAATTATCTTTC+AGG + tig0030416:41091-41110 Msa1443310:intron 20.0%
!! AGATTTATATGCATATGATA+TGG - tig0030416:41143-41162 None:intergenic 20.0%
!! TAATAAACTGGTAAAAGAAA+AGG - tig0030416:42121-42140 None:intergenic 20.0%
!! TTAAGTGCATAATAATAAAC+TGG - tig0030416:42133-42152 None:intergenic 20.0%
!! ATTTCAGATGAAATTTCTTT+GGG + tig0030416:42165-42184 Msa1443310:three_prime_UTR 20.0%
!!! CTTGTTAATTTTTTTTCTTG+AGG + tig0030416:42283-42302 Msa1443310:three_prime_UTR 20.0%
!!! TGTTAATTTTTTTTCTTGAG+GGG + tig0030416:42285-42304 Msa1443310:three_prime_UTR 20.0%
! ACCATTATTACTGAAAAAAG+AGG + tig0030416:37154-37173 Msa1443310:intron 25.0%
!!! ACCTCTTTTTTCAGTAATAA+TGG - tig0030416:37158-37177 None:intergenic 25.0%
! ATTATTACTGAAAAAAGAGG+TGG + tig0030416:37157-37176 Msa1443310:intron 25.0%
! CAAAAGAAAAATGACAGAAA+AGG + tig0030416:37553-37572 Msa1443310:intron 25.0%
! CAATGGTATAGATTAAAGAT+AGG - tig0030416:37638-37657 None:intergenic 25.0%
! CTATCTTTAATCTATACCAT+TGG + tig0030416:37636-37655 Msa1443310:intron 25.0%
!! TGTAATTTTCATTATGTTCC+TGG - tig0030416:38007-38026 None:intergenic 25.0%
!!! CATTTTTTCCACACATTTAT+GGG - tig0030416:39280-39299 None:intergenic 25.0%
! AATCATCAACCTTTATGTTT+GGG - tig0030416:39345-39364 None:intergenic 25.0%
! ATGAGAATGAAACTAAGAAA+GGG + tig0030416:39377-39396 Msa1443310:CDS 25.0%
! GTATCACTGATATACAAATA+CGG + tig0030416:39835-39854 Msa1443310:CDS 25.0%
!!! GACACAAATACTTTTTAACA+GGG + tig0030416:39990-40009 Msa1443310:CDS 25.0%
! TCTATTTGAAAAAAATAGCC+GGG - tig0030416:40177-40196 None:intergenic 25.0%
!! CTTTATTAATGTACTTGTTG+TGG + tig0030416:40212-40231 Msa1443310:intron 25.0%
! AGAAAAAATAAAAGGTGATC+TGG + tig0030416:40341-40360 Msa1443310:intron 25.0%
!! TTATTTTCATCTTGTTACTG+GGG + tig0030416:40561-40580 Msa1443310:intron 25.0%
! TTTCTATGGCTTATACAATA+GGG - tig0030416:40629-40648 None:intergenic 25.0%
!! TTTTCTATGGCTTATACAAT+AGG - tig0030416:40630-40649 None:intergenic 25.0%
! TTTCAGTTATGCTAAAAGTA+AGG - tig0030416:40776-40795 None:intergenic 25.0%
!! TAATCGTAATCCGAAATTTT+GGG - tig0030416:40938-40957 None:intergenic 25.0%
!! ATAATCGTAATCCGAAATTT+TGG - tig0030416:40939-40958 None:intergenic 25.0%
!! CATACTTCATATTGGATTTT+TGG + tig0030416:40992-41011 Msa1443310:intron 25.0%
! CTTTAATTATCTTTCAGGAA+AGG + tig0030416:41096-41115 Msa1443310:intron 25.0%
! ATCATATGATTCTTTCAGTT+TGG + tig0030416:41505-41524 Msa1443310:CDS 25.0%
! GATTTCAGATGAAATTTCTT+TGG + tig0030416:42164-42183 Msa1443310:three_prime_UTR 25.0%
! CATAAATCAGAACAAACATT+GGG - tig0030416:42226-42245 None:intergenic 25.0%
CATTTAATCGAGTATAAGCT+AGG + tig0030416:37432-37451 Msa1443310:intron 30.0%
GAGAAAACAACTTGAATCTT+AGG + tig0030416:37609-37628 Msa1443310:intron 30.0%
! TATACTCAACTGATTCAAGT+TGG + tig0030416:37685-37704 Msa1443310:intron 30.0%
! ATTTGGACCACCTAAATTTT+GGG - tig0030416:37712-37731 None:intergenic 30.0%
! AATTTGGACCACCTAAATTT+TGG - tig0030416:37713-37732 None:intergenic 30.0%
CTGGTTGTTATGAGAATTTA+GGG - tig0030416:38155-38174 None:intergenic 30.0%
TCTGGTTGTTATGAGAATTT+AGG - tig0030416:38156-38175 None:intergenic 30.0%
!! TTTGGTTTGTAGGTATCTAT+TGG - tig0030416:38438-38457 None:intergenic 30.0%
! GTAAAGATTAGGGATCTTTT+GGG - tig0030416:38657-38676 None:intergenic 30.0%
! TGTAAAGATTAGGGATCTTT+TGG - tig0030416:38658-38677 None:intergenic 30.0%
!!! TTTTTGCTTCATTGAGTTGA+AGG - tig0030416:38771-38790 None:intergenic 30.0%
AGGACTTGATTATCAAATGT+AGG + tig0030416:38816-38835 Msa1443310:CDS 30.0%
GGACTTGATTATCAAATGTA+GGG + tig0030416:38817-38836 Msa1443310:CDS 30.0%
! TTTAGCAACTTTTGTTAGGA+AGG - tig0030416:39176-39195 None:intergenic 30.0%
!!! GTGTTTTAGCAACTTTTGTT+AGG - tig0030416:39180-39199 None:intergenic 30.0%
!!! GCATTTTTTCCACACATTTA+TGG - tig0030416:39281-39300 None:intergenic 30.0%
GAATCATCAACCTTTATGTT+TGG - tig0030416:39346-39365 None:intergenic 30.0%
GATGAGAATGAAACTAAGAA+AGG + tig0030416:39376-39395 Msa1443310:CDS 30.0%
TGAGAATGAAACTAAGAAAG+GGG + tig0030416:39378-39397 Msa1443310:CDS 30.0%
AGATTTCAAAGCTTCTTCTA+AGG + tig0030416:39588-39607 Msa1443310:CDS 30.0%
TTATGAAGCAACGAGAAAAT+TGG + tig0030416:39657-39676 Msa1443310:CDS 30.0%
TGATACTAACACATCCATTA+AGG - tig0030416:39821-39840 None:intergenic 30.0%
!! CGACACAAATACTTTTTAAC+AGG + tig0030416:39989-40008 Msa1443310:CDS 30.0%
TGTTTGTCTGAACTTTATTC+TGG + tig0030416:40072-40091 Msa1443310:CDS 30.0%
ATCTTTACATTGACATTGAG+TGG + tig0030416:40387-40406 Msa1443310:intron 30.0%
TCTTTACATTGACATTGAGT+GGG + tig0030416:40388-40407 Msa1443310:intron 30.0%
! TATTTTCATCTTGTTACTGG+GGG + tig0030416:40562-40581 Msa1443310:intron 30.0%
! TATTTATGCCATTGGTAGTT+CGG + tig0030416:40732-40751 Msa1443310:intron 30.0%
TAGCATAACTGAAATTGATG+AGG + tig0030416:40782-40801 Msa1443310:intron 30.0%
AGCATAACTGAAATTGATGA+GGG + tig0030416:40783-40802 Msa1443310:intron 30.0%
ATGTTCAAACCCCAAAATTT+CGG + tig0030416:40925-40944 Msa1443310:intron 30.0%
! AATCGTAATCCGAAATTTTG+GGG - tig0030416:40937-40956 None:intergenic 30.0%
GTGAATACCACAAACAATAA+AGG + tig0030416:40967-40986 Msa1443310:intron 30.0%
TAAAGGCTCATACTTCATAT+TGG + tig0030416:40984-41003 Msa1443310:intron 30.0%
!! GGATTTTTGGAAATCCTAAT+CGG + tig0030416:41005-41024 Msa1443310:intron 30.0%
AATTATCTTTCAGGAAAGGT+TGG + tig0030416:41100-41119 Msa1443310:intron 30.0%
TATTAATGGAGATTTCCAGA+AGG + tig0030416:41358-41377 Msa1443310:CDS 30.0%
AAGAGATGCAATAATGTCAA+AGG - tig0030416:41384-41403 None:intergenic 30.0%
AATGCTGAAGGATAAAATCA+AGG + tig0030416:41445-41464 Msa1443310:CDS 30.0%
ATGATGAAGAGAAGGTAAAT+AGG - tig0030416:41490-41509 None:intergenic 30.0%
AGAATCATATGATGAAGAGA+AGG - tig0030416:41498-41517 None:intergenic 30.0%
TAGATAATTTCTCAGTCAAC+TGG - tig0030416:41688-41707 None:intergenic 30.0%
TATGCACTTAATCTAGATTC+TGG + tig0030416:42142-42161 Msa1443310:three_prime_UTR 30.0%
CCATAAATCAGAACAAACAT+TGG - tig0030416:42227-42246 None:intergenic 30.0%
CCAATGTTTGTTCTGATTTA+TGG + tig0030416:42224-42243 Msa1443310:three_prime_UTR 30.0%
AAAATGAGCCACAAAAATGC+AGG - tig0030416:37458-37477 None:intergenic 35.0%
!! CTTAAACAGGTTGTTGCTTT+GGG - tig0030416:37512-37531 None:intergenic 35.0%
! ACTTAAACAGGTTGTTGCTT+TGG - tig0030416:37513-37532 None:intergenic 35.0%
!! TCAAGTTGGACCCAAAATTT+AGG + tig0030416:37699-37718 Msa1443310:intron 35.0%
! GACACCGTAGTATATGTTTT+AGG - tig0030416:37744-37763 None:intergenic 35.0%
TAACATATGTCTTTGAGCAC+TGG - tig0030416:37878-37897 None:intergenic 35.0%
CATTGTAAATTGGTACATCC+AGG + tig0030416:37986-38005 Msa1443310:intron 35.0%
TAACAACCAGACTAAACCAA+TGG + tig0030416:38165-38184 Msa1443310:CDS 35.0%
TGAATAAACACAGAGAGAGA+CGG - tig0030416:38263-38282 None:intergenic 35.0%
GGTTCATCATCAATATCAGT+GGG - tig0030416:38371-38390 None:intergenic 35.0%
AGGTTCATCATCAATATCAG+TGG - tig0030416:38372-38391 None:intergenic 35.0%
! CTATTGGCTGTATTGTTGTT+GGG - tig0030416:38422-38441 None:intergenic 35.0%
! TCTATTGGCTGTATTGTTGT+TGG - tig0030416:38423-38442 None:intergenic 35.0%
! CAGATTTAACAACACGCTTT+TGG - tig0030416:38493-38512 None:intergenic 35.0%
!! AGATAAGCGTTTTGATGAGA+TGG + tig0030416:38517-38536 Msa1443310:CDS 35.0%
ATTCTTGATCTGATCAACAG+TGG - tig0030416:38546-38565 None:intergenic 35.0%
ATGCTATCAAGATCAATGAC+TGG + tig0030416:38564-38583 Msa1443310:CDS 35.0%
TGCTATCAAGATCAATGACT+GGG + tig0030416:38565-38584 Msa1443310:CDS 35.0%
GATCCCTAATCTTTACATCA+AGG + tig0030416:38661-38680 Msa1443310:CDS 35.0%
GAGCCTTGATGTAAAGATTA+GGG - tig0030416:38667-38686 None:intergenic 35.0%
AGAGCCTTGATGTAAAGATT+AGG - tig0030416:38668-38687 None:intergenic 35.0%
GAAGAACAATAAGCAATACG+AGG + tig0030416:38796-38815 Msa1443310:CDS 35.0%
AGGTTCAATGATCTCATCAT+CGG - tig0030416:38903-38922 None:intergenic 35.0%
AAAAGCTTAGCAAGAAAGAC+AGG + tig0030416:39020-39039 Msa1443310:CDS 35.0%
CAAGAAGTTCAAAGAGATTC+TGG + tig0030416:39099-39118 Msa1443310:CDS 35.0%
!! CATAAAGGTTGATGATTCTG+TGG + tig0030416:39348-39367 Msa1443310:CDS 35.0%
TGAATATGTTGAGAGACTCA+GGG + tig0030416:39507-39526 Msa1443310:CDS 35.0%
CAATGCTTTCAAGATATTCC+TGG - tig0030416:39567-39586 None:intergenic 35.0%
! CAGGAATATCTTGAAAGCAT+TGG + tig0030416:39565-39584 Msa1443310:CDS 35.0%
! TGAGGAGTTAAAAGGTTTTG+AGG + tig0030416:39717-39736 Msa1443310:CDS 35.0%
!!! ATTAAGGTCCTGCTATTTTC+CGG - tig0030416:39805-39824 None:intergenic 35.0%
! AGTTAGGTCTATGTGCTTTT+CGG + tig0030416:40022-40041 Msa1443310:CDS 35.0%
TTGTCTGAACTTTATTCTGG+TGG + tig0030416:40075-40094 Msa1443310:CDS 35.0%
! CTGGAGTCTTTTCATGATAA+CGG - tig0030416:40140-40159 None:intergenic 35.0%
CAAATAGATGTCTCATAGCA+TGG + tig0030416:40189-40208 Msa1443310:intron 35.0%
ATCAGATACAATGTAAGCAC+CGG - tig0030416:40249-40268 None:intergenic 35.0%
!! TTTCTTTAGAGCAGTGACAT+TGG - tig0030416:40297-40316 None:intergenic 35.0%
CTTTACATTGACATTGAGTG+GGG + tig0030416:40389-40408 Msa1443310:intron 35.0%
! GTGGGGATTAATCAATTTTG+AGG + tig0030416:40406-40425 Msa1443310:intron 35.0%
TGTTAAACTCATAGAGCATG+AGG + tig0030416:40667-40686 Msa1443310:intron 35.0%
GTTAAACTCATAGAGCATGA+GGG + tig0030416:40668-40687 Msa1443310:intron 35.0%
TTAAACTCATAGAGCATGAG+GGG + tig0030416:40669-40688 Msa1443310:intron 35.0%
AAAAGTAAGGCACACTTTGT+TGG - tig0030416:40763-40782 None:intergenic 35.0%
! CATGCTCTTATTTCACTACA+TGG - tig0030416:40833-40852 None:intergenic 35.0%
! TCACAGAAAGTTTTCTGTCT+TGG + tig0030416:40901-40920 Msa1443310:intron 35.0%
GTATGAGCCTTTATTGTTTG+TGG - tig0030416:40977-40996 None:intergenic 35.0%
AGTGAGAAACAAACATTCAC+CGG + tig0030416:41287-41306 Msa1443310:CDS 35.0%
TCCATTAATAAGAACCCTTG+TGG - tig0030416:41348-41367 None:intergenic 35.0%
TGACATTATTGCATCTCTTG+AGG + tig0030416:41385-41404 Msa1443310:CDS 35.0%
GTGTTCATAGTATTGTCAGT+AGG + tig0030416:41564-41583 Msa1443310:CDS 35.0%
TCAGAAATGTTGAACTCTCA+AGG + tig0030416:41645-41664 Msa1443310:CDS 35.0%
CAGAAATGTTGAACTCTCAA+GGG + tig0030416:41646-41665 Msa1443310:CDS 35.0%
ACTTGTCCTATTCTCAAACA+AGG + tig0030416:41855-41874 Msa1443310:CDS 35.0%
TAGAACTCCACTCTCTTCTT+CGG - tig0030416:37091-37110 None:intergenic 40.0%
CTGAAAAAAGAGGTGGAATG+TGG + tig0030416:37164-37183 Msa1443310:intron 40.0%
AGTTGGACCCAAAATTTAGG+TGG + tig0030416:37702-37721 Msa1443310:intron 40.0%
AACATATACTACGGTGTCCT+CGG + tig0030416:37746-37765 Msa1443310:intron 40.0%
!! ATGTCTTTGAGCACTGGTTA+AGG - tig0030416:37872-37891 None:intergenic 40.0%
AGCTGCAGTTTCTTCTTCAT+CGG + tig0030416:38096-38115 Msa1443310:CDS 40.0%
TTGTTGGGTTCATCATCAAC+GGG - tig0030416:38407-38426 None:intergenic 40.0%
GTTGTTGGGTTCATCATCAA+CGG - tig0030416:38408-38427 None:intergenic 40.0%
!! CTTCATTGAGTTGAAGGCTT+TGG - tig0030416:38765-38784 None:intergenic 40.0%
AGAAGTTTCAGAATCCGACA+CGG - tig0030416:38948-38967 None:intergenic 40.0%
!! GATTCTGAAACTTCTGAGCT+TGG + tig0030416:38953-38972 Msa1443310:CDS 40.0%
! TTGCTAAGCTTTTGATCCCA+AGG - tig0030416:39013-39032 None:intergenic 40.0%
! TAGCAAGAAAGACAGGCTTT+TGG + tig0030416:39027-39046 Msa1443310:CDS 40.0%
AAAAGCCTAGTGAGATCACA+TGG + tig0030416:39065-39084 Msa1443310:CDS 40.0%
AAAGCCTAGTGAGATCACAT+GGG + tig0030416:39066-39085 Msa1443310:CDS 40.0%
GCTCAGTTTGATGTTAATCC+AGG + tig0030416:39238-39257 Msa1443310:CDS 40.0%
AAAATGCGTGCAGAATATGC+TGG + tig0030416:39294-39313 Msa1443310:CDS 40.0%
AAGAAAGGGGATGACTATGA+CGG + tig0030416:39391-39410 Msa1443310:CDS 40.0%
CTGCAAGCTCTTGAAAAACT+CGG - tig0030416:39467-39486 None:intergenic 40.0%
TCAACATATTCACGTGTGTG+GGG - tig0030416:39499-39518 None:intergenic 40.0%
CTCAACATATTCACGTGTGT+GGG - tig0030416:39500-39519 None:intergenic 40.0%
TCTCAACATATTCACGTGTG+TGG - tig0030416:39501-39520 None:intergenic 40.0%
GTGAATATGTTGAGAGACTC+AGG + tig0030416:39506-39525 Msa1443310:CDS 40.0%
TGTGCAAGAACAACAAACTG+AGG - tig0030416:39538-39557 None:intergenic 40.0%
!! TTCTAAGGTAGCCTTGAAGA+GGG + tig0030416:39603-39622 Msa1443310:CDS 40.0%
AATGAGTTCAACCCTCTTCA+AGG - tig0030416:39617-39636 None:intergenic 40.0%
CATTTACTACAAACCGCATG+AGG + tig0030416:39633-39652 Msa1443310:CDS 40.0%
GTTGCTTCATAAACCTCATG+CGG - tig0030416:39649-39668 None:intergenic 40.0%
!! AGATAATGGAGAGATGAGTG+AGG + tig0030416:39699-39718 Msa1443310:CDS 40.0%
GAGATGAGTGAGGAGTTAAA+AGG + tig0030416:39709-39728 Msa1443310:CDS 40.0%
!!! TTAAGGTCCTGCTATTTTCC+GGG - tig0030416:39804-39823 None:intergenic 40.0%
GGAAAATAGCAGGACCTTAA+TGG + tig0030416:39804-39823 Msa1443310:CDS 40.0%
CAAACTCATCAAGAAGAGCA+TGG - tig0030416:39906-39925 None:intergenic 40.0%
ACTCATAAGCAACAGATCAC+GGG - tig0030416:39935-39954 None:intergenic 40.0%
GACTCATAAGCAACAGATCA+CGG - tig0030416:39936-39955 None:intergenic 40.0%
GCAAGAAAATGTTCACCACA+TGG + tig0030416:39960-39979 Msa1443310:CDS 40.0%
TTTGTGTCGAAATGTCCATG+TGG - tig0030416:39978-39997 None:intergenic 40.0%
! GTTAGGTCTATGTGCTTTTC+GGG + tig0030416:40023-40042 Msa1443310:CDS 40.0%
CTGAACTTTATTCTGGTGGA+CGG + tig0030416:40079-40098 Msa1443310:CDS 40.0%
! TGAACTTTATTCTGGTGGAC+GGG + tig0030416:40080-40099 Msa1443310:CDS 40.0%
TCATGAAAAGACTCCAGAAC+AGG + tig0030416:40143-40162 Msa1443310:CDS 40.0%
GAATTGAGTGGGGTAAGAAA+AGG - tig0030416:40703-40722 None:intergenic 40.0%
AGGAAAGGTTGGAAAGAAGA+CGG + tig0030416:41111-41130 Msa1443310:intron 40.0%
GCATATAAATCTTGAGCTCC+TGG + tig0030416:41151-41170 Msa1443310:CDS 40.0%
!! ATGTAAGATGCACTGATTCC+AGG - tig0030416:41172-41191 None:intergenic 40.0%
ACGCTTAGCATCATGAACAT+TGG - tig0030416:41228-41247 None:intergenic 40.0%
! TTTGTTTCTCACTGACCTCA+AGG - tig0030416:41280-41299 None:intergenic 40.0%
AACTGTCAGGGATCATGTTA+TGG + tig0030416:41319-41338 Msa1443310:CDS 40.0%
GCCACAAGGGTTCTTATTAA+TGG + tig0030416:41344-41363 Msa1443310:CDS 40.0%
CAATAATGTCAAAGGCCTTC+TGG - tig0030416:41376-41395 None:intergenic 40.0%
TTATTGCATCTCTTGAGGTG+TGG + tig0030416:41390-41409 Msa1443310:CDS 40.0%
!! ATCCTTCAGCATTTCTAGCA+CGG - tig0030416:41438-41457 None:intergenic 40.0%
GCTGAAGGATAAAATCAAGG+AGG + tig0030416:41448-41467 Msa1443310:CDS 40.0%
GAAGGATAAAATCAAGGAGG+AGG + tig0030416:41451-41470 Msa1443310:CDS 40.0%
CTGACAATACTATGAACACG+AGG - tig0030416:41563-41582 None:intergenic 40.0%
CAGTAGGATGATGATCAATG+AGG + tig0030416:41580-41599 Msa1443310:CDS 40.0%
CTGAAAATAATGCACCCAGT+TGG - tig0030416:41629-41648 None:intergenic 40.0%
ATGAAAGAGCTACAGAAGCA+AGG + tig0030416:41723-41742 Msa1443310:CDS 40.0%
TCCTATTCTCAAACAAGGCA+AGG + tig0030416:41860-41879 Msa1443310:CDS 40.0%
!! CTTCGTGTTAGTTTGTTGTG+TGG + tig0030416:42310-42329 Msa1443310:three_prime_UTR 40.0%
GTTCTTCCTCCTCTATCTCA+CGG - tig0030416:37069-37088 None:intergenic 45.0%
! AAGCTAGGCCTGCATTTTTG+TGG + tig0030416:37447-37466 Msa1443310:intron 45.0%
TCAGTGCAGCCAAAGATATG+TGG + tig0030416:37578-37597 Msa1443310:intron 45.0%
CAGTGCAGCCAAAGATATGT+GGG + tig0030416:37579-37598 Msa1443310:intron 45.0%
CTCTCAAGCCCACATATCTT+TGG - tig0030416:37590-37609 None:intergenic 45.0%
CTTTCTTAACCAGTACTCCG+AGG - tig0030416:37766-37785 None:intergenic 45.0%
!!! GGTTTTGTTTTGCGCGATGA+AGG - tig0030416:38134-38153 None:intergenic 45.0%
!! TCGAAGCCATTGGTTTAGTC+TGG - tig0030416:38174-38193 None:intergenic 45.0%
AACCAATGGCTTCGAGATTC+TGG + tig0030416:38179-38198 Msa1443310:CDS 45.0%
! TCAACGGGTTCAGTATCGTT+AGG - tig0030416:38392-38411 None:intergenic 45.0%
!! CAACAACGGGTTTGGTTTGT+AGG - tig0030416:38448-38467 None:intergenic 45.0%
! ACTGTCATCAACAACGGGTT+TGG - tig0030416:38456-38475 None:intergenic 45.0%
TCGTCACTGTCATCAACAAC+GGG - tig0030416:38461-38480 None:intergenic 45.0%
GTCGTCACTGTCATCAACAA+CGG - tig0030416:38462-38481 None:intergenic 45.0%
GCTTGAAGATTTCCTTGCTC+AGG + tig0030416:38694-38713 Msa1443310:CDS 45.0%
TATTAGCAGAAGCCTGAGCA+AGG - tig0030416:38709-38728 None:intergenic 45.0%
TGCTCAGGCTTCTGCTAATA+AGG + tig0030416:38709-38728 Msa1443310:CDS 45.0%
! TTGAAGGCTTTGGCATTGCT+GGG - tig0030416:38755-38774 None:intergenic 45.0%
TCATTGAACCTGATCAGCTC+AGG + tig0030416:38912-38931 Msa1443310:CDS 45.0%
GAAGTTTCAGAATCCGACAC+GGG - tig0030416:38947-38966 None:intergenic 45.0%
!! CTTCTGAGCTTGGTAATGAC+AGG + tig0030416:38963-38982 Msa1443310:CDS 45.0%
! TCAAAGAGATTCTGGAAGCC+AGG + tig0030416:39107-39126 Msa1443310:CDS 45.0%
! CAAAGAGATTCTGGAAGCCA+GGG + tig0030416:39108-39127 Msa1443310:CDS 45.0%
! AAAGAGATTCTGGAAGCCAG+GGG + tig0030416:39109-39128 Msa1443310:CDS 45.0%
! GCTGCAGATTCTTTTCAGTG+TGG + tig0030416:39210-39229 Msa1443310:CDS 45.0%
ATGTTAATCCAGGCCTCAGT+GGG + tig0030416:39248-39267 Msa1443310:CDS 45.0%
GGCATATGCCCATAAATGTG+TGG + tig0030416:39269-39288 Msa1443310:CDS 45.0%
AAGTTGCCCCAGACATGAAT+GGG - tig0030416:39418-39437 None:intergenic 45.0%
TAAGTTGCCCCAGACATGAA+TGG - tig0030416:39419-39438 None:intergenic 45.0%
TGTTCTTGCACAGAATGTCC+AGG + tig0030416:39546-39565 Msa1443310:CDS 45.0%
!! CTTCTAAGGTAGCCTTGAAG+AGG + tig0030416:39602-39621 Msa1443310:CDS 45.0%
ATGACCGTAGAGGGAGATAA+TGG + tig0030416:39685-39704 Msa1443310:CDS 45.0%
CTCTCCATTATCTCCCTCTA+CGG - tig0030416:39692-39711 None:intergenic 45.0%
AGTTCCGGGGTAACAACAAA+CGG - tig0030416:39760-39779 None:intergenic 45.0%
AACAGGGCTATGTCACAGTT+AGG + tig0030416:40006-40025 Msa1443310:CDS 45.0%
!!! GTCTATGTGCTTTTCGGGTT+GGG + tig0030416:40028-40047 Msa1443310:CDS 45.0%
CCAGAACAGGTACTAAATCC+CGG + tig0030416:40156-40175 Msa1443310:intron 45.0%
TGTTGTGGTCAAGTGCATAC+CGG + tig0030416:40227-40246 Msa1443310:intron 45.0%
TTTCATCTTGTTACTGGGGG+AGG + tig0030416:40565-40584 Msa1443310:intron 45.0%
TTCATCTTGTTACTGGGGGA+GGG + tig0030416:40566-40585 Msa1443310:intron 45.0%
! ATGCCATTGGTAGTTCGGTT+TGG + tig0030416:40737-40756 Msa1443310:intron 45.0%
GATTAAACCCTCACATGACC+CGG - tig0030416:41055-41074 None:intergenic 45.0%
TCTTACATCTGCTATGCTGC+TGG + tig0030416:41184-41203 Msa1443310:CDS 45.0%
! TGAACATTGGCTGCCATGTT+GGG - tig0030416:41215-41234 None:intergenic 45.0%
! ATGAACATTGGCTGCCATGT+TGG - tig0030416:41216-41235 None:intergenic 45.0%
ACATGATCCCTGACAGTTTC+AGG - tig0030416:41317-41336 None:intergenic 45.0%
ATCATGTTATGGCTGCCACA+AGG + tig0030416:41330-41349 Msa1443310:CDS 45.0%
TCATGTTATGGCTGCCACAA+GGG + tig0030416:41331-41350 Msa1443310:CDS 45.0%
AGAGCTACAGAAGCAAGGTT+AGG + tig0030416:41728-41747 Msa1443310:CDS 45.0%
!! GCCTTGCCTTGTTTGAGAAT+AGG - tig0030416:41864-41883 None:intergenic 45.0%
GCATTATCGTTCAGTCAAGC+TGG + tig0030416:41914-41933 Msa1443310:CDS 45.0%
TTATCGTTCAGTCAAGCTGG+TGG + tig0030416:41917-41936 Msa1443310:CDS 45.0%
TATCGTTCAGTCAAGCTGGT+GGG + tig0030416:41918-41937 Msa1443310:CDS 45.0%
AGAATTCAGGGAGGACTCAA+GGG + tig0030416:41987-42006 Msa1443310:CDS 45.0%
TCAAGGGGGTTCAACATTGA+GGG + tig0030416:42003-42022 Msa1443310:CDS 45.0%
CAGAACAAACATTGGGAGCT+GGG - tig0030416:42219-42238 None:intergenic 45.0%
TCAGAACAAACATTGGGAGC+TGG - tig0030416:42220-42239 None:intergenic 45.0%
!!! ATTTTATTTTTATAAAATTG+TGG - tig0030416:37353-37372 None:intergenic 5.0%
!! TTATTATTATTATTATTCTT+AGG + tig0030416:38319-38338 Msa1443310:intron 5.0%
!! TATTATTATTATTATTCTTA+GGG + tig0030416:38320-38339 Msa1443310:intron 5.0%
TGACAGACACCGTGAGATAG+AGG + tig0030416:37057-37076 Msa1443310:CDS 50.0%
GGAAGAACCGAAGAAGAGAG+TGG + tig0030416:37081-37100 Msa1443310:CDS 50.0%
GTCCAGAATCTCGAAGCCAT+TGG - tig0030416:38184-38203 None:intergenic 50.0%
GATGACAGTGACGACGATGA+TGG + tig0030416:38467-38486 Msa1443310:CDS 50.0%
GCTGGGACTCATCTTCTTCT+TGG - tig0030416:38738-38757 None:intergenic 50.0%
! GTTGAAGGCTTTGGCATTGC+TGG - tig0030416:38756-38775 None:intergenic 50.0%
GGAAAAGGATGACGAGGATG+AGG + tig0030416:38859-38878 Msa1443310:CDS 50.0%
!! TGATGATGGCGATGCTCCTT+GGG + tig0030416:38994-39013 Msa1443310:CDS 50.0%
GTGTCCCATGTGATCTCACT+AGG - tig0030416:39073-39092 None:intergenic 50.0%
GGGAACTGGAAGGTTTGAAC+AGG + tig0030416:39138-39157 Msa1443310:CDS 50.0%
AGAATCTGCAGCTTCTGAGC+AGG - tig0030416:39202-39221 None:intergenic 50.0%
GATGTTAATCCAGGCCTCAG+TGG + tig0030416:39247-39266 Msa1443310:CDS 50.0%
TTATGGGCATATGCCCACTG+AGG - tig0030416:39264-39283 None:intergenic 50.0%
CGTGCAGCACCCAAACATAA+AGG + tig0030416:39333-39352 Msa1443310:CDS 50.0%
!! ATGACGGACCCATTCATGTC+TGG + tig0030416:39407-39426 Msa1443310:CDS 50.0%
! TGACGGACCCATTCATGTCT+GGG + tig0030416:39408-39427 Msa1443310:CDS 50.0%
ATTGGCTGAGATGACCGTAG+AGG + tig0030416:39675-39694 Msa1443310:CDS 50.0%
TTGGCTGAGATGACCGTAGA+GGG + tig0030416:39676-39695 Msa1443310:CDS 50.0%
!! TGCTCCGTTTGTTGTTACCC+CGG + tig0030416:39753-39772 Msa1443310:CDS 50.0%
TGTTGTTACCCCGGAACTTG+TGG + tig0030416:39762-39781 Msa1443310:CDS 50.0%
!!! CTGCTATTTTCCGGGAAGGT+GGG - tig0030416:39796-39815 None:intergenic 50.0%
!!! GGTCTATGTGCTTTTCGGGT+TGG + tig0030416:40027-40046 Msa1443310:CDS 50.0%
! TTATTCTGGTGGACGGGTGA+AGG + tig0030416:40086-40105 Msa1443310:CDS 50.0%
GTGAAGGAATTGCTTGCGCA+AGG + tig0030416:40102-40121 Msa1443310:CDS 50.0%
CCGGGATTTAGTACCTGTTC+TGG - tig0030416:40159-40178 None:intergenic 50.0%
TCATCTTGTTACTGGGGGAG+GGG + tig0030416:40567-40586 Msa1443310:intron 50.0%
TGGCCAAACCGAACTACCAA+TGG - tig0030416:40743-40762 None:intergenic 50.0%
TCTATCTACCGGGTCATGTG+AGG + tig0030416:41044-41063 Msa1443310:intron 50.0%
CTATCTACCGGGTCATGTGA+GGG + tig0030416:41045-41064 Msa1443310:intron 50.0%
TCTCACTGACCTCAAGGAAG+CGG - tig0030416:41274-41293 None:intergenic 50.0%
TGATCCCTGACAGTTTCAGG+AGG - tig0030416:41314-41333 None:intergenic 50.0%
CACCGTGCTAGAAATGCTGA+AGG + tig0030416:41433-41452 Msa1443310:CDS 50.0%
!! AAATCAAGGAGGAGGCGCTT+AGG + tig0030416:41459-41478 Msa1443310:CDS 50.0%
ATGAGGAGCTTCATGCAAGC+TGG + tig0030416:41597-41616 Msa1443310:CDS 50.0%
TGAGGAGCTTCATGCAAGCT+GGG + tig0030416:41598-41617 Msa1443310:CDS 50.0%
! TGTTGAACTCTCAAGGGTGC+AGG + tig0030416:41652-41671 Msa1443310:CDS 50.0%
GCTACAGAAGCAAGGTTAGG+CGG + tig0030416:41731-41750 Msa1443310:CDS 50.0%
TCTCAAACAAGGCAAGGCAG+TGG + tig0030416:41866-41885 Msa1443310:CDS 50.0%
GAGGCGGCTATCAGAATTCA+GGG + tig0030416:41975-41994 Msa1443310:CDS 50.0%
CAGAATTCAGGGAGGACTCA+AGG + tig0030416:41986-42005 Msa1443310:CDS 50.0%
GAATTCAGGGAGGACTCAAG+GGG + tig0030416:41988-42007 Msa1443310:CDS 50.0%
AATTCAGGGAGGACTCAAGG+GGG + tig0030416:41989-42008 Msa1443310:CDS 50.0%
CTCAAGGGGGTTCAACATTG+AGG + tig0030416:42002-42021 Msa1443310:CDS 50.0%
CAAGGGGGTTCAACATTGAG+GGG + tig0030416:42004-42023 Msa1443310:CDS 50.0%
!! GCGGGTAGAAGTATCTACGT+GGG - tig0030416:42032-42051 None:intergenic 50.0%
!! TGCGGGTAGAAGTATCTACG+TGG - tig0030416:42033-42052 None:intergenic 50.0%
CGTAGATACTTCTACCCGCA+TGG + tig0030416:42033-42052 Msa1443310:CDS 50.0%
!! TACCCGCATGGTTAGCCTTA+GGG + tig0030416:42045-42064 Msa1443310:CDS 50.0%
CAGACACCGTGAGATAGAGG+AGG + tig0030416:37060-37079 Msa1443310:CDS 55.0%
GGCTTCGAGATTCTGGACAC+AGG + tig0030416:38186-38205 Msa1443310:CDS 55.0%
TAGGGAGAGTCCTGAGAGTG+AGG + tig0030416:38835-38854 Msa1443310:CDS 55.0%
AGGGAGAGTCCTGAGAGTGA+GGG + tig0030416:38836-38855 Msa1443310:CDS 55.0%
TCCTGAGAGTGAGGGGGAAA+AGG + tig0030416:38844-38863 Msa1443310:CDS 55.0%
! TCCTTTTCCCCCTCACTCTC+AGG - tig0030416:38848-38867 None:intergenic 55.0%
TGAGGGGGAAAAGGATGACG+AGG + tig0030416:38853-38872 Msa1443310:CDS 55.0%
ACCTGATCAGCTCAGGAAGC+CGG + tig0030416:38919-38938 Msa1443310:CDS 55.0%
!! CTTGGTAATGACAGGCCTCC+TGG + tig0030416:38971-38990 Msa1443310:CDS 55.0%
!! GTGATGATGGCGATGCTCCT+TGG + tig0030416:38993-39012 Msa1443310:CDS 55.0%
GACGGACCCATTCATGTCTG+GGG + tig0030416:39409-39428 Msa1443310:CDS 55.0%
GGGGTAACAACAAACGGAGC+AGG - tig0030416:39754-39773 None:intergenic 55.0%
!!! CCTGCTATTTTCCGGGAAGG+TGG - tig0030416:39797-39816 None:intergenic 55.0%
CCACCTTCCCGGAAAATAGC+AGG + tig0030416:39794-39813 Msa1443310:CDS 55.0%
!!! GGTCCTGCTATTTTCCGGGA+AGG - tig0030416:39800-39819 None:intergenic 55.0%
!!! ATGTGCTTTTCGGGTTGGGC+TGG + tig0030416:40032-40051 Msa1443310:CDS 55.0%
CATCTTGTTACTGGGGGAGG+GGG + tig0030416:40568-40587 Msa1443310:intron 55.0%
ATAGAGCATGAGGGGAAGCG+TGG + tig0030416:40677-40696 Msa1443310:intron 55.0%
GCTGCTGGAAGTTCCCAACA+TGG + tig0030416:41199-41218 Msa1443310:CDS 55.0%
GAATTTCCGCCGCTTCCTTG+AGG + tig0030416:41262-41281 Msa1443310:CDS 55.0%
CCTGACAGTTTCAGGAGGAC+CGG - tig0030416:41309-41328 None:intergenic 55.0%
CGGTCCTCCTGAAACTGTCA+GGG + tig0030416:41307-41326 Msa1443310:CDS 55.0%
CAAGCTGGGATCAGCCAACT+GGG + tig0030416:41612-41631 Msa1443310:CDS 55.0%
! ACTCTCAAGGGTGCAGGCTT+TGG + tig0030416:41658-41677 Msa1443310:CDS 55.0%
ACAGAAGCAAGGTTAGGCGG+CGG + tig0030416:41734-41753 Msa1443310:CDS 55.0%
TGCCTCCAAGGCGAAGAGAT+GGG + tig0030416:41768-41787 Msa1443310:CDS 55.0%
!! GGTGGTAGTGGAACGTCTTC+AGG + tig0030416:41818-41837 Msa1443310:CDS 55.0%
!! GGTAGTGGAACGTCTTCAGG+TGG + tig0030416:41821-41840 Msa1443310:CDS 55.0%
GGCAGTGGACGTACAGGATA+CGG + tig0030416:41881-41900 Msa1443310:CDS 55.0%
AGTGGACGTACAGGATACGG+TGG + tig0030416:41884-41903 Msa1443310:CDS 55.0%
TTCAGTCAAGCTGGTGGGAG+TGG + tig0030416:41923-41942 Msa1443310:CDS 55.0%
! GTGGCGGCTATTCTAGAGGA+CGG + tig0030416:41942-41961 Msa1443310:CDS 55.0%
! TGGCGGCTATTCTAGAGGAC+GGG + tig0030416:41943-41962 Msa1443310:CDS 55.0%
TCTAGAGGACGGGGAACGAT+TGG + tig0030416:41953-41972 Msa1443310:CDS 55.0%
GGAGGCGGCTATCAGAATTC+AGG + tig0030416:41974-41993 Msa1443310:CDS 55.0%
GCGGCTATCAGAATTCAGGG+AGG + tig0030416:41978-41997 Msa1443310:CDS 55.0%
!! CTACCCGCATGGTTAGCCTT+AGG + tig0030416:42044-42063 Msa1443310:CDS 55.0%
!! ACCCGCATGGTTAGCCTTAG+GGG + tig0030416:42046-42065 Msa1443310:CDS 55.0%
TCCCCTAAGGCTAACCATGC+GGG - tig0030416:42050-42069 None:intergenic 55.0%
CTCCCCTAAGGCTAACCATG+CGG - tig0030416:42051-42070 None:intergenic 55.0%
GTCAAGCACGAACTCCCCTA+AGG - tig0030416:42063-42082 None:intergenic 55.0%
CAAACATTGGGAGCTGGGAG+AGG - tig0030416:42214-42233 None:intergenic 55.0%
CTACGGTGTCCTCGGAGTAC+TGG + tig0030416:37754-37773 Msa1443310:intron 60.0%
GGGAGAGTCCTGAGAGTGAG+GGG + tig0030416:38837-38856 Msa1443310:CDS 60.0%
GGAGAGTCCTGAGAGTGAGG+GGG + tig0030416:38838-38857 Msa1443310:CDS 60.0%
TCCGGCTTCCTGAGCTGATC+AGG - tig0030416:38923-38942 None:intergenic 60.0%
TCAGAATCCGACACGGGCTC+CGG - tig0030416:38941-38960 None:intergenic 60.0%
! GACAGGCCTCCTGGTGATGA+TGG + tig0030416:38980-38999 Msa1443310:CDS 60.0%
GCATCGCCATCATCACCAGG+AGG - tig0030416:38989-39008 None:intergenic 60.0%
!! GGAGCATCGCCATCATCACC+AGG - tig0030416:38992-39011 None:intergenic 60.0%
! AGATTCTGGAAGCCAGGGGC+AGG + tig0030416:39113-39132 Msa1443310:CDS 60.0%
TTACCCCGGAACTTGTGGCG+CGG + tig0030416:39767-39786 Msa1443310:CDS 60.0%
TTTCCGCGCCACAAGTTCCG+GGG - tig0030416:39773-39792 None:intergenic 60.0%
GTTTCCGCGCCACAAGTTCC+GGG - tig0030416:39774-39793 None:intergenic 60.0%
GGTTTCCGCGCCACAAGTTC+CGG - tig0030416:39775-39794 None:intergenic 60.0%
!! GGGCTGGTTTCTGAAGCGCA+TGG + tig0030416:40048-40067 Msa1443310:CDS 60.0%
CACTGACCTCAAGGAAGCGG+CGG - tig0030416:41271-41290 None:intergenic 60.0%
CCGGTCCTCCTGAAACTGTC+AGG + tig0030416:41306-41325 Msa1443310:CDS 60.0%
GCAAGCTGGGATCAGCCAAC+TGG + tig0030416:41611-41630 Msa1443310:CDS 60.0%
AAGCAAGGTTAGGCGGCGGT+GGG + tig0030416:41738-41757 Msa1443310:CDS 60.0%
!! GTGGGTTGGATCTGCCTCCA+AGG + tig0030416:41756-41775 Msa1443310:CDS 60.0%
CTGCCTCCAAGGCGAAGAGA+TGG + tig0030416:41767-41786 Msa1443310:CDS 60.0%
TGCCCATCTCTTCGCCTTGG+AGG - tig0030416:41773-41792 None:intergenic 60.0%
TCCAAGGCGAAGAGATGGGC+AGG + tig0030416:41772-41791 Msa1443310:CDS 60.0%
TCCTGCCCATCTCTTCGCCT+TGG - tig0030416:41776-41795 None:intergenic 60.0%
GATTATGCCGCTGCAGCTGC+TGG + tig0030416:41794-41813 Msa1443310:CDS 60.0%
GTGGAACGTCTTCAGGTGGC+AGG + tig0030416:41825-41844 Msa1443310:CDS 60.0%
GAACGTCTTCAGGTGGCAGG+TGG + tig0030416:41828-41847 Msa1443310:CDS 60.0%
AGGCAAGGCAGTGGACGTAC+AGG + tig0030416:41875-41894 Msa1443310:CDS 60.0%
GGACGTACAGGATACGGTGG+AGG + tig0030416:41887-41906 Msa1443310:CDS 60.0%
AGTCAAGCTGGTGGGAGTGG+CGG + tig0030416:41926-41945 Msa1443310:CDS 60.0%
GGGAGTGGCGGCTATTCTAG+AGG + tig0030416:41938-41957 Msa1443310:CDS 60.0%
! GGCGGCTATTCTAGAGGACG+GGG + tig0030416:41944-41963 Msa1443310:CDS 60.0%
AGAGGACGGGGAACGATTGG+AGG + tig0030416:41956-41975 Msa1443310:CDS 60.0%
CATTGGGAGCTGGGAGAGGA+GGG - tig0030416:42210-42229 None:intergenic 60.0%
ACATTGGGAGCTGGGAGAGG+AGG - tig0030416:42211-42230 None:intergenic 60.0%
TCTGGAAGCCAGGGGCAGGA+AGG + tig0030416:39117-39136 Msa1443310:CDS 65.0%
CTGGAAGCCAGGGGCAGGAA+GGG + tig0030416:39118-39137 Msa1443310:CDS 65.0%
TCCAGTTCCCTTCCTGCCCC+TGG - tig0030416:39128-39147 None:intergenic 65.0%
GGGGCAGGAAGGGAACTGGA+AGG + tig0030416:39128-39147 Msa1443310:CDS 65.0%
GGCATATGCCCACTGAGGCC+TGG - tig0030416:39259-39278 None:intergenic 65.0%
GAAGCAAGGTTAGGCGGCGG+TGG + tig0030416:41737-41756 Msa1443310:CDS 65.0%
AAGGTTAGGCGGCGGTGGGT+TGG + tig0030416:41742-41761 Msa1443310:CDS 65.0%
TATGCCGCTGCAGCTGCTGG+TGG + tig0030416:41797-41816 Msa1443310:CDS 65.0%
ACCACCACCAGCAGCTGCAG+CGG - tig0030416:41804-41823 None:intergenic 65.0%
!! GCAGCTGCTGGTGGTGGTAG+TGG + tig0030416:41806-41825 Msa1443310:CDS 65.0%
GGACGGGGAACGATTGGAGG+CGG + tig0030416:41959-41978 Msa1443310:CDS 65.0%
CAGGAAGCCGGAGCCCGTGT+CGG + tig0030416:38931-38950 Msa1443310:CDS 70.0%
GCCAGGGGCAGGAAGGGAAC+TGG + tig0030416:39124-39143 Msa1443310:CDS 70.0%
GGCGCGGAAACCCACCTTCC+CGG + tig0030416:39783-39802 Msa1443310:CDS 70.0%
GCCGCTGCAGCTGCTGGTGG+TGG + tig0030416:41800-41819 Msa1443310:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0030416 gene 37040 42378 37040 ID=Msa1443310;Name=Msa1443310
tig0030416 mRNA 37040 42378 37040 ID=Msa1443310-mRNA-1;Parent=Msa1443310;Name=Msa1443310-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.66|0.5|0.75|1|1|4|297|997
tig0030416 exon 37040 37123 37040 ID=Msa1443310-mRNA-1:exon:13822;Parent=Msa1443310-mRNA-1
tig0030416 exon 38091 38207 38091 ID=Msa1443310-mRNA-1:exon:13823;Parent=Msa1443310-mRNA-1
tig0030416 exon 38341 40164 38341 ID=Msa1443310-mRNA-1:exon:13824;Parent=Msa1443310-mRNA-1
tig0030416 exon 41113 42378 41113 ID=Msa1443310-mRNA-1:exon:13825;Parent=Msa1443310-mRNA-1
tig0030416 CDS 37040 37123 37040 ID=Msa1443310-mRNA-1:cds;Parent=Msa1443310-mRNA-1
tig0030416 CDS 38091 38207 38091 ID=Msa1443310-mRNA-1:cds;Parent=Msa1443310-mRNA-1
tig0030416 CDS 38341 40164 38341 ID=Msa1443310-mRNA-1:cds;Parent=Msa1443310-mRNA-1
tig0030416 CDS 41113 42081 41113 ID=Msa1443310-mRNA-1:cds;Parent=Msa1443310-mRNA-1
tig0030416 three_prime_UTR 42082 42378 42082 ID=Msa1443310-mRNA-1:three_prime_utr;Parent=Msa1443310-mRNA-1
Gene Sequence

>Msa1443310

ATGAGTGACGGCGAGGTTGACAGACACCGTGAGATAGAGGAGGAAGAACCGAAGAAGAGAGTGGAGTTCTACAAATCTGAAAAAATAGTAGCTGCAGTTTCTTCTTCATCGGAACACGATCGATCCTTCATCGCGCAAAACAAAACCCTAAATTCTCATAACAACCAGACTAAACCAATGGCTTCGAGATTCTGGACACAGGGTAACAGCGATAGTGACGATGACGAACCCACTGATATTGATGATGAACCTAACGATACTGAACCCGTTGATGATGAACCCAACAACAATACAGCCAATAGATACCTACAAACCAAACCCGTTGTTGATGACAGTGACGACGATGATGGCCAAAAGCGTGTTGTTAAATCTGCTAAAGATAAGCGTTTTGATGAGATGGCTTCCACTGTTGATCAGATCAAGAATGCTATCAAGATCAATGACTGGGTCAGCTTGCAAGAGAGCTTCGACAAGATCAACAAACAGCTCGAGAAAGTTATGCGTGTTATCGAGTCCCAAAAGATCCCTAATCTTTACATCAAGGCTCTTGTTATGCTTGAAGATTTCCTTGCTCAGGCTTCTGCTAATAAGGATGCCAAGAAGAAGATGAGTCCCAGCAATGCCAAAGCCTTCAACTCAATGAAGCAAAAATTGAAGAAGAACAATAAGCAATACGAGGACTTGATTATCAAATGTAGGGAGAGTCCTGAGAGTGAGGGGGAAAAGGATGACGAGGATGAGGACTCTGACGAATACGAGACCGATGATGAGATCATTGAACCTGATCAGCTCAGGAAGCCGGAGCCCGTGTCGGATTCTGAAACTTCTGAGCTTGGTAATGACAGGCCTCCTGGTGATGATGGCGATGCTCCTTGGGATCAAAAGCTTAGCAAGAAAGACAGGCTTTTGGAGAAAATGTTCATGAAAAAGCCTAGTGAGATCACATGGGACACTGTTAACAAGAAGTTCAAAGAGATTCTGGAAGCCAGGGGCAGGAAGGGAACTGGAAGGTTTGAACAGGTTGAGCAGCTTACCTTCCTAACAAAAGTTGCTAAAACACCTGCTCAGAAGCTGCAGATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGCCTCAGTGGGCATATGCCCATAAATGTGTGGAAAAAATGCGTGCAGAATATGCTGGTCATTCTTGATATTCTCGTGCAGCACCCAAACATAAAGGTTGATGATTCTGTGGAACTAGATGAGAATGAAACTAAGAAAGGGGATGACTATGACGGACCCATTCATGTCTGGGGCAACTTAGTTGCTTTCTTAGAAAAAATAGATGCCGAGTTTTTCAAGAGCTTGCAGTGCATTGATCCCCACACACGTGAATATGTTGAGAGACTCAGGGATGAGCCTCAGTTTGTTGTTCTTGCACAGAATGTCCAGGAATATCTTGAAAGCATTGGAGATTTCAAAGCTTCTTCTAAGGTAGCCTTGAAGAGGGTTGAACTCATTTACTACAAACCGCATGAGGTTTATGAAGCAACGAGAAAATTGGCTGAGATGACCGTAGAGGGAGATAATGGAGAGATGAGTGAGGAGTTAAAAGGTTTTGAGGATACAAGAATTCCTGCTCCGTTTGTTGTTACCCCGGAACTTGTGGCGCGGAAACCCACCTTCCCGGAAAATAGCAGGACCTTAATGGATGTGTTAGTATCACTGATATACAAATACGGAGATGAGCGCACTAAAGCACGTGCAATGCTTTGTGATATATATCACCATGCTCTTCTTGATGAGTTTGCAGTCGCCCGTGATCTGTTGCTTATGAGTCATTTGCAAGAAAATGTTCACCACATGGACATTTCGACACAAATACTTTTTAACAGGGCTATGTCACAGTTAGGTCTATGTGCTTTTCGGGTTGGGCTGGTTTCTGAAGCGCATGGCTGTTTGTCTGAACTTTATTCTGGTGGACGGGTGAAGGAATTGCTTGCGCAAGGAGTTTCACAGAGCCGTTATCATGAAAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGGCAGATGCCATATCATATGCATATAAATCTTGAGCTCCTGGAATCAGTGCATCTTACATCTGCTATGCTGCTGGAAGTTCCCAACATGGCAGCCAATGTTCATGATGCTAAGCGTAAGATCATCAGTAAGAATTTCCGCCGCTTCCTTGAGGTCAGTGAGAAACAAACATTCACCGGTCCTCCTGAAACTGTCAGGGATCATGTTATGGCTGCCACAAGGGTTCTTATTAATGGAGATTTCCAGAAGGCCTTTGACATTATTGCATCTCTTGAGGTGTGGAAATTTGTGAAAAATCGTGACACCGTGCTAGAAATGCTGAAGGATAAAATCAAGGAGGAGGCGCTTAGGACATACCTATTTACCTTCTCTTCATCATATGATTCTTTCAGTTTGGATCAGCTCACAAATTTTTTTGATCTCTCTCTTCCTCGTGTTCATAGTATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGATCAGCCAACTGGGTGCATTATTTTCAGAAATGTTGAACTCTCAAGGGTGCAGGCTTTGGCATTCCAGTTGACTGAGAAATTATCTATCGTTGCAGAGAGTAATGAAAGAGCTACAGAAGCAAGGTTAGGCGGCGGTGGGTTGGATCTGCCTCCAAGGCGAAGAGATGGGCAGGATTATGCCGCTGCAGCTGCTGGTGGTGGTAGTGGAACGTCTTCAGGTGGCAGGTGGCAAGACTTGTCCTATTCTCAAACAAGGCAAGGCAGTGGACGTACAGGATACGGTGGAGGAAGAGCATTATCGTTCAGTCAAGCTGGTGGGAGTGGCGGCTATTCTAGAGGACGGGGAACGATTGGAGGCGGCTATCAGAATTCAGGGAGGACTCAAGGGGGTTCAACATTGAGGGGAACCCACGTAGATACTTCTACCCGCATGGTTAGCCTTAGGGGAGTTCGTGCTTGA
Protein sequence

>Msa1443310

MSDGEVDRHREIEEEEPKKRVEFYKSEKIVAAVSSSSEHDRSFIAQNKTLNSHNNQTKPMASRFWTQGNSDSDDDEPTDIDDEPNDTEPVDDEPNNNTANRYLQTKPVVDDSDDDDGQKRVVKSAKDKRFDEMASTVDQIKNAIKINDWVSLQESFDKINKQLEKVMRVIESQKIPNLYIKALVMLEDFLAQASANKDAKKKMSPSNAKAFNSMKQKLKKNNKQYEDLIIKCRESPESEGEKDDEDEDSDEYETDDEIIEPDQLRKPEPVSDSETSELGNDRPPGDDGDAPWDQKLSKKDRLLEKMFMKKPSEITWDTVNKKFKEILEARGRKGTGRFEQVEQLTFLTKVAKTPAQKLQILFSVVSAQFDVNPGLSGHMPINVWKKCVQNMLVILDILVQHPNIKVDDSVELDENETKKGDDYDGPIHVWGNLVAFLEKIDAEFFKSLQCIDPHTREYVERLRDEPQFVVLAQNVQEYLESIGDFKASSKVALKRVELIYYKPHEVYEATRKLAEMTVEGDNGEMSEELKGFEDTRIPAPFVVTPELVARKPTFPENSRTLMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFAVARDLLLMSHLQENVHHMDISTQILFNRAMSQLGLCAFRVGLVSEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLTSAMLLEVPNMAANVHDAKRKIISKNFRRFLEVSEKQTFTGPPETVRDHVMAATRVLINGDFQKAFDIIASLEVWKFVKNRDTVLEMLKDKIKEEALRTYLFTFSSSYDSFSLDQLTNFFDLSLPRVHSIVSRMMINEELHASWDQPTGCIIFRNVELSRVQALAFQLTEKLSIVAESNERATEARLGGGGLDLPPRRRDGQDYAAAAAGGGSGTSSGGRWQDLSYSQTRQGSGRTGYGGGRALSFSQAGGSGGYSRGRGTIGGGYQNSGRTQGGSTLRGTHVDTSTRMVSLRGVRA*