Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972480 | XP_013450865.1 | 99.399 | 666 | 4 | 0 | 1 | 666 | 1 | 666 | 0.0 | 1365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972480 | sp|Q9LJP4|CSLC4_ARATH | 72.635 | 687 | 153 | 7 | 1 | 666 | 1 | 673 | 0.0 | 1015 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972480 | A0A072UGL0 | 99.399 | 666 | 4 | 0 | 1 | 666 | 1 | 666 | 0.0 | 1365 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101240 | Msa0972480 | 0.801091 | 1.060194e-48 | -8.615850e-47 |
| Msa0194890 | Msa0972480 | 0.812501 | 4.106524e-51 | -8.615850e-47 |
| Msa0865970 | Msa0972480 | 0.801201 | 1.006691e-48 | -8.615850e-47 |
| Msa0903170 | Msa0972480 | 0.979723 | 1.343529e-148 | -8.615850e-47 |
| Msa0972480 | Msa1078550 | 0.800755 | 1.241659e-48 | -8.615850e-47 |
| Msa0972480 | Msa1078560 | 0.805444 | 1.330712e-49 | -8.615850e-47 |
| Msa0972480 | Msa1189820 | 0.806640 | 7.457898e-50 | -8.615850e-47 |
| Msa0972480 | Msa1243920 | 0.827159 | 1.824623e-54 | -8.615850e-47 |
| Msa0972480 | Msa1268530 | 0.801135 | 1.038846e-48 | -8.615850e-47 |
| Msa0972480 | Msa1284990 | 0.833518 | 5.092662e-56 | -8.615850e-47 |
| Msa0972480 | Msa1360420 | 0.800963 | 1.126073e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972480 | MtrunA17_Chr6g0451381 | 99.399 | 666 | 4 | 0 | 1 | 666 | 1 | 666 | 0.0 | 1365 |
| Msa0972480 | MtrunA17_Chr4g0000581 | 69.162 | 668 | 184 | 7 | 15 | 666 | 38 | 699 | 0.0 | 926 |
| Msa0972480 | MtrunA17_Chr3g0139081 | 67.013 | 673 | 205 | 7 | 7 | 666 | 19 | 687 | 0.0 | 909 |
| Msa0972480 | MtrunA17_Chr3g0135191 | 66.311 | 656 | 187 | 9 | 35 | 665 | 51 | 697 | 0.0 | 847 |
| Msa0972480 | MtrunA17_Chr8g0339101 | 64.992 | 637 | 216 | 4 | 34 | 666 | 69 | 702 | 0.0 | 830 |
| Msa0972480 | MtrunA17_Chr1g0179381 | 42.264 | 530 | 269 | 6 | 139 | 662 | 18 | 516 | 4.53e-149 | 442 |
| Msa0972480 | MtrunA17_Chr1g0179441 | 42.075 | 530 | 271 | 4 | 139 | 662 | 18 | 517 | 8.58e-148 | 439 |
| Msa0972480 | MtrunA17_Chr7g0265711 | 41.431 | 531 | 275 | 4 | 138 | 662 | 26 | 526 | 5.37e-145 | 432 |
| Msa0972480 | MtrunA17_Chr1g0179421 | 40.189 | 530 | 281 | 3 | 139 | 662 | 18 | 517 | 6.18e-145 | 432 |
| Msa0972480 | MtrunA17_Chr4g0027221 | 41.651 | 545 | 273 | 11 | 138 | 665 | 26 | 542 | 3.25e-142 | 426 |
| Msa0972480 | MtrunA17_Chr1g0198111 | 45.263 | 475 | 228 | 7 | 189 | 662 | 81 | 524 | 1.72e-140 | 421 |
| Msa0972480 | MtrunA17_Chr7g0264621 | 40.789 | 532 | 280 | 6 | 140 | 665 | 25 | 527 | 7.10e-139 | 416 |
| Msa0972480 | MtrunA17_Chr1g0179391 | 48.265 | 317 | 163 | 1 | 248 | 563 | 1 | 317 | 1.18e-110 | 337 |
| Msa0972480 | MtrunA17_Chr4g0064791 | 50.286 | 175 | 61 | 5 | 150 | 305 | 33 | 200 | 1.07e-44 | 158 |
| Msa0972480 | MtrunA17_Chr1g0179401 | 39.316 | 117 | 66 | 1 | 139 | 250 | 18 | 134 | 2.90e-22 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0972480 | AT3G28180.1 | 72.635 | 687 | 153 | 7 | 1 | 666 | 1 | 673 | 0.0 | 1015 |
| Msa0972480 | AT2G24630.1 | 68.713 | 668 | 187 | 9 | 15 | 666 | 29 | 690 | 0.0 | 912 |
| Msa0972480 | AT2G24630.2 | 68.713 | 668 | 187 | 9 | 15 | 666 | 29 | 690 | 0.0 | 912 |
| Msa0972480 | AT4G31590.1 | 68.684 | 661 | 191 | 6 | 21 | 666 | 33 | 692 | 0.0 | 901 |
| Msa0972480 | AT3G07330.1 | 59.647 | 679 | 244 | 7 | 8 | 666 | 14 | 682 | 0.0 | 820 |
| Msa0972480 | AT3G07330.2 | 59.647 | 679 | 244 | 7 | 8 | 666 | 14 | 682 | 0.0 | 820 |
| Msa0972480 | AT4G07960.1 | 64.060 | 665 | 210 | 8 | 22 | 665 | 42 | 698 | 0.0 | 815 |
| Msa0972480 | AT4G07960.2 | 64.060 | 665 | 210 | 8 | 22 | 665 | 42 | 698 | 0.0 | 815 |
| Msa0972480 | AT5G22740.1 | 40.968 | 537 | 277 | 6 | 138 | 665 | 27 | 532 | 3.66e-144 | 431 |
| Msa0972480 | AT5G03760.1 | 41.604 | 536 | 273 | 7 | 138 | 665 | 27 | 530 | 1.02e-142 | 427 |
| Msa0972480 | AT1G23480.1 | 41.604 | 536 | 272 | 7 | 139 | 665 | 50 | 553 | 1.24e-138 | 417 |
| Msa0972480 | AT1G23480.2 | 41.604 | 536 | 272 | 7 | 139 | 665 | 50 | 553 | 1.24e-138 | 417 |
| Msa0972480 | AT1G23480.3 | 44.835 | 484 | 232 | 7 | 181 | 662 | 28 | 478 | 4.23e-138 | 413 |
| Msa0972480 | AT4G13410.1 | 39.245 | 530 | 281 | 4 | 139 | 662 | 42 | 536 | 1.63e-136 | 411 |
| Msa0972480 | AT5G16190.3 | 40.113 | 531 | 281 | 4 | 138 | 662 | 4 | 503 | 3.61e-136 | 409 |
| Msa0972480 | AT1G24070.1 | 39.734 | 526 | 280 | 6 | 143 | 662 | 57 | 551 | 2.86e-134 | 405 |
| Msa0972480 | AT2G35650.1 | 44.977 | 438 | 235 | 2 | 140 | 571 | 51 | 488 | 4.24e-134 | 405 |
| Msa0972480 | AT5G16190.1 | 43.197 | 463 | 231 | 3 | 201 | 662 | 11 | 442 | 1.77e-133 | 400 |
| Msa0972480 | AT5G16190.2 | 44.545 | 440 | 238 | 2 | 138 | 571 | 4 | 443 | 2.27e-132 | 397 |
| Msa0972480 | AT2G35650.4 | 46.283 | 417 | 215 | 3 | 161 | 571 | 3 | 416 | 7.13e-132 | 397 |
| Msa0972480 | AT2G35650.2 | 46.283 | 417 | 215 | 3 | 161 | 571 | 3 | 416 | 7.13e-132 | 397 |
| Msa0972480 | AT5G16190.4 | 38.121 | 564 | 279 | 6 | 138 | 662 | 4 | 536 | 1.55e-129 | 393 |
| Msa0972480 | AT3G56000.1 | 41.328 | 467 | 238 | 5 | 203 | 665 | 92 | 526 | 2.63e-123 | 377 |
| Msa0972480 | AT4G16590.1 | 36.654 | 532 | 262 | 8 | 139 | 662 | 55 | 519 | 4.44e-114 | 352 |
| Msa0972480 | AT1G23480.4 | 42.959 | 419 | 206 | 5 | 249 | 665 | 21 | 408 | 4.07e-111 | 341 |
| Msa0972480 | AT4G13410.3 | 39.364 | 409 | 212 | 2 | 255 | 662 | 2 | 375 | 6.23e-106 | 326 |
| Msa0972480 | AT2G35650.3 | 46.951 | 328 | 172 | 2 | 246 | 571 | 3 | 330 | 8.96e-106 | 327 |
| Msa0972480 | AT4G13410.2 | 47.205 | 322 | 165 | 2 | 139 | 455 | 42 | 363 | 1.72e-100 | 313 |
| Msa0972480 | AT1G24070.2 | 47.799 | 318 | 161 | 2 | 143 | 455 | 57 | 374 | 3.86e-100 | 312 |
Find 130 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGAAGTTTGTGAAGTTTA+AGG | 0.118814 | 6_4:-4791400 | None:intergenic |
| AAGTTCAATGCAATGGTTTC+TGG | 0.121832 | 6_4:+4794829 | Msa0972480:CDS |
| TATAACCTTGTTGTGTTCTT+AGG | 0.143034 | 6_4:-4791512 | None:intergenic |
| TTTGTTCTTGATTCAATCTT+TGG | 0.162323 | 6_4:+4791736 | Msa0972480:CDS |
| TTCTTTGTCTTGGATGCTTT+TGG | 0.162589 | 6_4:+4791768 | Msa0972480:CDS |
| GAGAAATCTGTTATGGAATT+TGG | 0.167874 | 6_4:-4791021 | None:intergenic |
| GGAGAGTTATATAATTTATT+TGG | 0.212266 | 6_4:+4795433 | Msa0972480:three_prime_UTR |
| ACAAGGAAAGGGACTGATTT+TGG | 0.216482 | 6_4:-4794769 | None:intergenic |
| TTGATAAGCATCTGTAAATT+AGG | 0.220610 | 6_4:-4792686 | None:intergenic |
| AGGTTTGGCATTCCTTGTTA+TGG | 0.243994 | 6_4:+4795161 | Msa0972480:CDS |
| AAATTAGAATCACCAATTAT+TGG | 0.253424 | 6_4:-4795250 | None:intergenic |
| TAGTTCTTTCAACTGATATA+TGG | 0.264534 | 6_4:-4795278 | None:intergenic |
| AAATTACATTCTTGTCTCTA+TGG | 0.264788 | 6_4:-4795369 | None:intergenic |
| TGAACTAGTATTCTGTCTTT+TGG | 0.274513 | 6_4:-4792641 | None:intergenic |
| CAACAACATCGTTGGCATTC+TGG | 0.276703 | 6_4:+4793762 | Msa0972480:CDS |
| AGAATTTCATTATCTGATAT+TGG | 0.285395 | 6_4:+4791479 | Msa0972480:CDS |
| GGCATTCCTTGTTATGGGTT+TGG | 0.289107 | 6_4:+4795167 | Msa0972480:CDS |
| GGTTTGGCATTCCTTGTTAT+GGG | 0.296512 | 6_4:+4795162 | Msa0972480:CDS |
| GAATAGAGTGAATGAGTAGA+AGG | 0.304418 | 6_4:-4794641 | None:intergenic |
| AGCTGGTGTTTGGAGGATTA+AGG | 0.304743 | 6_4:+4793587 | Msa0972480:CDS |
| TTTCTAGACTTCAAATTTGT+TGG | 0.306232 | 6_4:+4795412 | Msa0972480:three_prime_UTR |
| AGAAGATTATGTTGCTCCTT+TGG | 0.310727 | 6_4:+4791685 | Msa0972480:CDS |
| TGTACTTTCAATTGTTGCTT+TGG | 0.311913 | 6_4:+4791556 | Msa0972480:CDS |
| AAAGAACTTTAACATCATTA+AGG | 0.316833 | 6_4:-4793704 | None:intergenic |
| TTTGTAAGCTTCATAGGATT+CGG | 0.325734 | 6_4:-4793736 | None:intergenic |
| TGTTTGGAGGATTAAGGCTT+TGG | 0.326554 | 6_4:+4793593 | Msa0972480:CDS |
| TCAAAGATGAGGTTTCTTCT+TGG | 0.332162 | 6_4:+4792705 | Msa0972480:CDS |
| GAATCGGGTTTGGAGTTATT+AGG | 0.334902 | 6_4:+4794991 | Msa0972480:CDS |
| GGCTATTTCTTGAATTTCTT+CGG | 0.340859 | 6_4:+4793552 | Msa0972480:CDS |
| TGCATGAGGTAATCAGGATT+TGG | 0.350956 | 6_4:-4792866 | None:intergenic |
| CAAAGGGGTAGTTCTGATTC+AGG | 0.359856 | 6_4:-4794694 | None:intergenic |
| TTGAATTTCTTCGGATTCAA+TGG | 0.361556 | 6_4:+4793561 | Msa0972480:CDS |
| ATGGTTTGCATGAGGTAATC+AGG | 0.371179 | 6_4:-4792872 | None:intergenic |
| GTGCTGCTTGTCAACTTGAT+TGG | 0.371683 | 6_4:+4792618 | Msa0972480:CDS |
| CAAATCAGAGAAATCTGTTA+TGG | 0.381587 | 6_4:-4791028 | None:intergenic |
| TTCAGGTATGAACATTGTTA+AGG | 0.381616 | 6_4:-4794677 | None:intergenic |
| ATTAAGGCTTTGGAGGAATC+AGG | 0.382115 | 6_4:+4793603 | Msa0972480:CDS |
| TTGTAAGCTTCATAGGATTC+GGG | 0.384558 | 6_4:-4793735 | None:intergenic |
| GATCGGCTTGTTCTTTGTCT+TGG | 0.385003 | 6_4:+4791758 | Msa0972480:CDS |
| CAAGTACAAAACAGTTTACA+TGG | 0.399324 | 6_4:+4791369 | Msa0972480:CDS |
| TCAATGGAACAGCTGGTGTT+TGG | 0.399437 | 6_4:+4793577 | Msa0972480:CDS |
| GTTGCATTTGTAACTGTGTT+TGG | 0.405584 | 6_4:-4791260 | None:intergenic |
| AACTAGGAAGTGCTTATGAA+TGG | 0.406621 | 6_4:+4794860 | Msa0972480:CDS |
| TCAACATCGTTGATGAATGA+AGG | 0.418640 | 6_4:-4791135 | None:intergenic |
| GCTGTTAGAGCTCATTTGAA+TGG | 0.419519 | 6_4:+4793666 | Msa0972480:CDS |
| CTGAATCAGAACTACCCCTT+TGG | 0.424047 | 6_4:+4794695 | Msa0972480:CDS |
| AAGGTTTATTCACAATCAAT+TGG | 0.427259 | 6_4:+4792596 | Msa0972480:intron |
| TTGGAGGATTAAGGCTTTGG+AGG | 0.432850 | 6_4:+4793596 | Msa0972480:CDS |
| AGACATAGATTGATCAGAAC+TGG | 0.436769 | 6_4:+4792755 | Msa0972480:CDS |
| AAGACACTCAGAATCGGGTT+TGG | 0.439191 | 6_4:+4794981 | Msa0972480:CDS |
| TTTGCATGTGATTCAACCTT+GGG | 0.444305 | 6_4:+4791613 | Msa0972480:CDS |
| ATCAGAACTGGTTATAAAGC+AGG | 0.449774 | 6_4:+4792767 | Msa0972480:CDS |
| TTCGGATTCAATGGAACAGC+TGG | 0.450845 | 6_4:+4793570 | Msa0972480:CDS |
| TGTATAATCATAAGATGATA+AGG | 0.452259 | 6_4:+4795344 | Msa0972480:three_prime_UTR |
| CATAGAAGACACTCAGAATC+GGG | 0.454828 | 6_4:+4794976 | Msa0972480:CDS |
| CAGTATTTAATGTGTGTGAT+TGG | 0.456277 | 6_4:-4791072 | None:intergenic |
| AAAAGTTGATTTGAGACCAT+TGG | 0.458146 | 6_4:-4791441 | None:intergenic |
| GTTATGGGTTTGGACTTGAT+TGG | 0.459333 | 6_4:+4795177 | Msa0972480:CDS |
| TCAGGTATGAACATTGTTAA+GGG | 0.460385 | 6_4:-4794676 | None:intergenic |
| GCAAACCATTCCACATTTCA+AGG | 0.461691 | 6_4:+4792886 | Msa0972480:CDS |
| GGATCCTTTGAGCTTTCCTA+TGG | 0.463637 | 6_4:+4791844 | Msa0972480:CDS |
| GTTTCTTCTTGGAAAGAGAA+AGG | 0.463915 | 6_4:+4792716 | Msa0972480:CDS |
| ATAGAAGCATAAACACTAAA+GGG | 0.464237 | 6_4:-4791109 | None:intergenic |
| CAGAATACTAGTTCAAGTAT+TGG | 0.468734 | 6_4:+4792649 | Msa0972480:CDS |
| GCATAGAAGACACTCAGAAT+CGG | 0.469925 | 6_4:+4794975 | Msa0972480:CDS |
| GACATAACAGATTACCCAAA+GGG | 0.470550 | 6_4:-4794710 | None:intergenic |
| GATTGGTTTCGAAATATGAA+TGG | 0.475490 | 6_4:-4791055 | None:intergenic |
| AATAGAAGCATAAACACTAA+AGG | 0.482889 | 6_4:-4791110 | None:intergenic |
| ACTAGGAAGTGCTTATGAAT+GGG | 0.484196 | 6_4:+4794861 | Msa0972480:CDS |
| TTAGAGCTCATTTGAATGGA+TGG | 0.488550 | 6_4:+4793670 | Msa0972480:CDS |
| TGAATCAGAACTACCCCTTT+GGG | 0.489082 | 6_4:+4794696 | Msa0972480:CDS |
| TCTTGATTCAATCTTTGGAT+CGG | 0.494682 | 6_4:+4791741 | Msa0972480:CDS |
| TGGGTTGTGACAAAGAAAAC+AGG | 0.496608 | 6_4:+4794880 | Msa0972480:CDS |
| ATGGAACAGCTGGTGTTTGG+AGG | 0.497020 | 6_4:+4793580 | Msa0972480:CDS |
| GCTTGAACTAGTCCCAAGTC+AGG | 0.499333 | 6_4:-4793435 | None:intergenic |
| AGAAGATAAGGGACAAGGAA+AGG | 0.499401 | 6_4:-4794781 | None:intergenic |
| GAGGTTGAACAACAAGTGAA+TGG | 0.500232 | 6_4:+4793531 | Msa0972480:CDS |
| TTTCTTCTTGGAAAGAGAAA+GGG | 0.503845 | 6_4:+4792717 | Msa0972480:CDS |
| GTTGAAAGAACTATATCAGC+TGG | 0.504119 | 6_4:+4795288 | Msa0972480:three_prime_UTR |
| TCTGAGTGTCTTCTATGCAA+TGG | 0.510526 | 6_4:-4794970 | None:intergenic |
| AGAGAGAGCTCTAATTTGAC+AGG | 0.511565 | 6_4:-4790931 | None:intergenic |
| TTTATAGGGAAAACCTGACT+TGG | 0.513915 | 6_4:+4793422 | Msa0972480:intron |
| AGGTTAAGAAGTTGAAGCCT+AGG | 0.514390 | 6_4:+4791795 | Msa0972480:CDS |
| TGTTCTCGAAAAGAAGATAA+GGG | 0.514946 | 6_4:-4794792 | None:intergenic |
| AAAAGATTCTTAACTTCCCA+AGG | 0.515319 | 6_4:-4791629 | None:intergenic |
| GTGTTCTCGAAAAGAAGATA+AGG | 0.521135 | 6_4:-4794793 | None:intergenic |
| CTTTGGAGGAATCAGGCGGT+TGG | 0.522058 | 6_4:+4793610 | Msa0972480:CDS |
| AATAGAGTGAATGAGTAGAA+GGG | 0.524542 | 6_4:-4794640 | None:intergenic |
| GGAGGAATCAGGCGGTTGGT+TGG | 0.525711 | 6_4:+4793614 | Msa0972480:CDS |
| AATCAGGCGGTTGGTTGGAA+AGG | 0.526492 | 6_4:+4793619 | Msa0972480:CDS |
| GAAGATAAGGGACAAGGAAA+GGG | 0.526734 | 6_4:-4794780 | None:intergenic |
| TAAGCATCATCATCAATCCT+AGG | 0.529060 | 6_4:-4791812 | None:intergenic |
| ACCTTGGCAGTTAATACAGC+AGG | 0.530600 | 6_4:-4793813 | None:intergenic |
| ATAATGCTTACCTTGAAATG+TGG | 0.531008 | 6_4:-4792896 | None:intergenic |
| GGTTACAAAGTTCAATGCAA+TGG | 0.535120 | 6_4:+4794822 | Msa0972480:CDS |
| ATTTGCATGTGATTCAACCT+TGG | 0.549569 | 6_4:+4791612 | Msa0972480:CDS |
| TTTAAGAACGACATGACGAT+AGG | 0.555206 | 6_4:-4794733 | None:intergenic |
| GGAATCTGAACAAGAACCAT+AGG | 0.556670 | 6_4:-4791860 | None:intergenic |
| GTTTCTGGACTATTTCAACT+AGG | 0.563242 | 6_4:+4794844 | Msa0972480:CDS |
| CAACATCGTTGATGAATGAA+GGG | 0.566057 | 6_4:-4791134 | None:intergenic |
| TTATAGGGAAAACCTGACTT+GGG | 0.571386 | 6_4:+4793423 | Msa0972480:intron |
| AAGGACAACAGTTGAGGACA+TGG | 0.574551 | 6_4:+4793638 | Msa0972480:CDS |
| ACAGATGCTTATCAAAGATG+AGG | 0.575011 | 6_4:+4792694 | Msa0972480:CDS |
| CGAAAAGAAGATAAGGGACA+AGG | 0.577643 | 6_4:-4794786 | None:intergenic |
| CAAAATTCAGAAAACAGAAG+TGG | 0.579115 | 6_4:+4795014 | Msa0972480:CDS |
| ACCTCTCTTTCATTACACAT+TGG | 0.581973 | 6_4:-4791881 | None:intergenic |
| TTCTTCTTGGAAAGAGAAAG+GGG | 0.584512 | 6_4:+4792718 | Msa0972480:CDS |
| TCCAATGTGTAATGAAAGAG+AGG | 0.588056 | 6_4:+4791880 | Msa0972480:CDS |
| TCCTGCTGTATTAACTGCCA+AGG | 0.589090 | 6_4:+4793812 | Msa0972480:CDS |
| TTGTTACATGTTCATGACGA+TGG | 0.591192 | 6_4:+4791305 | Msa0972480:CDS |
| GCTTACCTTGAAATGTGGAA+TGG | 0.591995 | 6_4:-4792891 | None:intergenic |
| TTTGACACAAACAAAACCAA+AGG | 0.592147 | 6_4:-4791701 | None:intergenic |
| GTTGGAAAGGACAACAGTTG+AGG | 0.595256 | 6_4:+4793632 | Msa0972480:CDS |
| TGGGACTAGTTCAAGCAAGA+TGG | 0.596166 | 6_4:+4793442 | Msa0972480:CDS |
| GCAGATATCAGTATGGAAGA+AGG | 0.599135 | 6_4:+4794573 | Msa0972480:intron |
| TTAAGAACGACATGACGATA+GGG | 0.607062 | 6_4:-4794732 | None:intergenic |
| TCAGAACTGGTTATAAAGCA+GGG | 0.612201 | 6_4:+4792768 | Msa0972480:CDS |
| TGATGATGCTTATGATGTTG+AGG | 0.612756 | 6_4:+4791823 | Msa0972480:CDS |
| AACTTCTGACATGTTTGACA+TGG | 0.637406 | 6_4:+4791414 | Msa0972480:CDS |
| TGTTTGACATGGTTGACCAA+TGG | 0.637450 | 6_4:+4791425 | Msa0972480:CDS |
| TCAAGTCCAAACCCATAACA+AGG | 0.641675 | 6_4:-4795173 | None:intergenic |
| AGAACCATAGGAAAGCTCAA+AGG | 0.660564 | 6_4:-4791848 | None:intergenic |
| AAGATGAGAATCTTCTAACA+AGG | 0.662993 | 6_4:+4793478 | Msa0972480:CDS |
| AAGTACAAAACAGTTTACAT+GGG | 0.663618 | 6_4:+4791370 | Msa0972480:CDS |
| TAATTTGACAGGCTAAAGCA+AGG | 0.665847 | 6_4:-4790920 | None:intergenic |
| GGACATAACAGATTACCCAA+AGG | 0.694073 | 6_4:-4794711 | None:intergenic |
| AATGTGGAATGGTTTGCATG+AGG | 0.700691 | 6_4:-4792880 | None:intergenic |
| AAGGCTTTGGAGGAATCAGG+CGG | 0.701186 | 6_4:+4793606 | Msa0972480:CDS |
| ACATAACAGATTACCCAAAG+GGG | 0.714598 | 6_4:-4794709 | None:intergenic |
| AAAATCCTAAGAACACAACA+AGG | 0.736658 | 6_4:+4791507 | Msa0972480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATTGAATTTTTATGATAA+TGG | - | chr6_4:4791183-4791202 | None:intergenic | 15.0% |
| !!! | AAATTCAATCTTTAGATTTT+TGG | + | chr6_4:4791192-4791211 | Msa0972480:five_prime_UTR | 15.0% |
| !!! | TTCCAATTTTACATTATTTT+TGG | + | chr6_4:4792019-4792038 | Msa0972480:intron | 15.0% |
| !! | TACCAAAAATAATGTAAAAT+TGG | - | chr6_4:4792024-4792043 | None:intergenic | 15.0% |
| !!! | ATAATGGATTAAATTATGAT+TGG | + | chr6_4:4792326-4792345 | Msa0972480:intron | 15.0% |
| !! | AGAAATATAATATTGGAAAA+TGG | + | chr6_4:4792979-4792998 | Msa0972480:intron | 15.0% |
| !!! | AATTTTCAAAACATTGTTTT+CGG | - | chr6_4:4793266-4793285 | None:intergenic | 15.0% |
| !! | ATAAGAAGAACAAAAATATT+AGG | - | chr6_4:4794603-4794622 | None:intergenic | 15.0% |
| !!! | TTGTTTTTTATACCAATAAT+TGG | + | chr6_4:4795238-4795257 | Msa0972480:three_prime_UTR | 15.0% |
| !!! | ATTTGGTTTTTTTATTTTTG+TGG | + | chr6_4:4795450-4795469 | Msa0972480:three_prime_UTR | 15.0% |
| !! | AGAATTTCATTATCTGATAT+TGG | + | chr6_4:4791479-4791498 | Msa0972480:CDS | 20.0% |
| !! | TTGATTCTAATCTATGATTT+AGG | + | chr6_4:4791920-4791939 | Msa0972480:intron | 20.0% |
| !! | ATTCAATTATGATTGCAATT+TGG | + | chr6_4:4791975-4791994 | Msa0972480:intron | 20.0% |
| !! | AATGTAAAATTGGAAAATCA+TGG | - | chr6_4:4792014-4792033 | None:intergenic | 20.0% |
| !! | ATTAAATTATGATTGGAACT+TGG | + | chr6_4:4792333-4792352 | Msa0972480:intron | 20.0% |
| !! | TAAGACAAAAAATGGAAAAA+TGG | - | chr6_4:4792382-4792401 | None:intergenic | 20.0% |
| !!! | AATTTTTCATTGTCCTTATT+TGG | - | chr6_4:4793130-4793149 | None:intergenic | 20.0% |
| !!! | TAATACATATTTTATCTGTG+AGG | + | chr6_4:4793346-4793365 | Msa0972480:intron | 20.0% |
| !! | AAAGAACTTTAACATCATTA+AGG | - | chr6_4:4793707-4793726 | None:intergenic | 20.0% |
| !!! | CTACTTTTTATAAACTATCT+TGG | + | chr6_4:4794190-4794209 | Msa0972480:intron | 20.0% |
| !! | TAATTAAGCACTTATAGTAT+AGG | - | chr6_4:4794398-4794417 | None:intergenic | 20.0% |
| !! | AATTTCAGTTGCAAAAATTT+GGG | - | chr6_4:4794497-4794516 | None:intergenic | 20.0% |
| !! | AAATTTCAGTTGCAAAAATT+TGG | - | chr6_4:4794498-4794517 | None:intergenic | 20.0% |
| !!! | TATTTTTGTTCTTCTTATTG+AGG | + | chr6_4:4794605-4794624 | Msa0972480:CDS | 20.0% |
| !! | AAATTAGAATCACCAATTAT+TGG | - | chr6_4:4795253-4795272 | None:intergenic | 20.0% |
| !! | TGTATAATCATAAGATGATA+AGG | + | chr6_4:4795344-4795363 | Msa0972480:three_prime_UTR | 20.0% |
| !! | TGAAGTCTAGAAAAAAAAAA+TGG | - | chr6_4:4795405-4795424 | None:intergenic | 20.0% |
| !! | GGAGAGTTATATAATTTATT+TGG | + | chr6_4:4795433-4795452 | Msa0972480:three_prime_UTR | 20.0% |
| !! | ATAGAAGCATAAACACTAAA+GGG | - | chr6_4:4791112-4791131 | None:intergenic | 25.0% |
| !! | AATAGAAGCATAAACACTAA+AGG | - | chr6_4:4791113-4791132 | None:intergenic | 25.0% |
| ! | AAAGAGAGAGAAAAAGAAAA+TGG | + | chr6_4:4791235-4791254 | Msa0972480:exon | 25.0% |
| ! | AAGTACAAAACAGTTTACAT+GGG | + | chr6_4:4791370-4791389 | Msa0972480:CDS | 25.0% |
| !!! | TCTCAAATCAACTTTTTCAT+TGG | + | chr6_4:4791448-4791467 | Msa0972480:CDS | 25.0% |
| !!! | TCATTGCTCATTTTAATCAA+TGG | + | chr6_4:4791588-4791607 | Msa0972480:CDS | 25.0% |
| !! | AAGTTAAGAATCTTTTGCAA+TGG | + | chr6_4:4791636-4791655 | Msa0972480:CDS | 25.0% |
| !!! | TCTTTTGCAATGGTTTTATA+TGG | + | chr6_4:4791646-4791665 | Msa0972480:CDS | 25.0% |
| ! | TTTGTTCTTGATTCAATCTT+TGG | + | chr6_4:4791736-4791755 | Msa0972480:CDS | 25.0% |
| ! | CAAACATCTTATGTGTATAT+TGG | + | chr6_4:4791952-4791971 | Msa0972480:intron | 25.0% |
| !! | ATGTAAGTAAATTCTAGCTA+AGG | + | chr6_4:4792115-4792134 | Msa0972480:intron | 25.0% |
| ! | TGGAAAATCATGTATGAATT+AGG | - | chr6_4:4792362-4792381 | None:intergenic | 25.0% |
| !!! | TTTGTTTTGTTTTTGAGTGA+AGG | + | chr6_4:4792577-4792596 | Msa0972480:intron | 25.0% |
| ! | AAGGTTTATTCACAATCAAT+TGG | + | chr6_4:4792596-4792615 | Msa0972480:intron | 25.0% |
| ! | TTGATAAGCATCTGTAAATT+AGG | - | chr6_4:4792689-4792708 | None:intergenic | 25.0% |
| ! | TGTCAAAAACTATGAATTTG+TGG | + | chr6_4:4792820-4792839 | Msa0972480:CDS | 25.0% |
| ! | TAAGCATTATAAATAAGCCA+AGG | + | chr6_4:4792909-4792928 | Msa0972480:intron | 25.0% |
| !!! | ATTTTCGTGACTTTGTTTAT+AGG | + | chr6_4:4793407-4793426 | Msa0972480:intron | 25.0% |
| !!! | TTTTCGTGACTTTGTTTATA+GGG | + | chr6_4:4793408-4793427 | Msa0972480:intron | 25.0% |
| !!! | TTGTTTTTTGTAAGCTTCAT+AGG | - | chr6_4:4793745-4793764 | None:intergenic | 25.0% |
| ! | AATAAGAATTAGCAATACCT+TGG | - | chr6_4:4793832-4793851 | None:intergenic | 25.0% |
| ! | TTCAACTTTATAGTGTAACA+TGG | + | chr6_4:4793857-4793876 | Msa0972480:intron | 25.0% |
| !! | TATGAACATAGTTTGACTTT+AGG | + | chr6_4:4794087-4794106 | Msa0972480:intron | 25.0% |
| ! | ATTTCAGTTGCAAAAATTTG+GGG | - | chr6_4:4794496-4794515 | None:intergenic | 25.0% |
| ! | AGAAGAAAAACAAACTCTAT+AGG | + | chr6_4:4795046-4795065 | Msa0972480:CDS | 25.0% |
| !!! | TTCTATTTCTTGCTTTTTCA+AGG | + | chr6_4:4795141-4795160 | Msa0972480:CDS | 25.0% |
| ! | TAGTTCTTTCAACTGATATA+TGG | - | chr6_4:4795281-4795300 | None:intergenic | 25.0% |
| ! | AAATTACATTCTTGTCTCTA+TGG | - | chr6_4:4795372-4795391 | None:intergenic | 25.0% |
| ! | TTTCTAGACTTCAAATTTGT+TGG | + | chr6_4:4795412-4795431 | Msa0972480:three_prime_UTR | 25.0% |
| !! | GTTTTTCACTTATGTAAAGT+AGG | + | chr6_4:4795472-4795491 | Msa0972480:three_prime_UTR | 25.0% |
| GAGAAATCTGTTATGGAATT+TGG | - | chr6_4:4791024-4791043 | None:intergenic | 30.0% | |
| CAAATCAGAGAAATCTGTTA+TGG | - | chr6_4:4791031-4791050 | None:intergenic | 30.0% | |
| !! | GATTGGTTTCGAAATATGAA+TGG | - | chr6_4:4791058-4791077 | None:intergenic | 30.0% |
| CAGTATTTAATGTGTGTGAT+TGG | - | chr6_4:4791075-4791094 | None:intergenic | 30.0% | |
| ! | TTTTGCTTCTCTTGAAACAT+TGG | - | chr6_4:4791341-4791360 | None:intergenic | 30.0% |
| CAAGTACAAAACAGTTTACA+TGG | + | chr6_4:4791369-4791388 | Msa0972480:CDS | 30.0% | |
| TCAGAAGTTTGTGAAGTTTA+AGG | - | chr6_4:4791403-4791422 | None:intergenic | 30.0% | |
| !! | AAAAGTTGATTTGAGACCAT+TGG | - | chr6_4:4791444-4791463 | None:intergenic | 30.0% |
| AAAATCCTAAGAACACAACA+AGG | + | chr6_4:4791507-4791526 | Msa0972480:CDS | 30.0% | |
| ! | TATAACCTTGTTGTGTTCTT+AGG | - | chr6_4:4791515-4791534 | None:intergenic | 30.0% |
| ! | TGTACTTTCAATTGTTGCTT+TGG | + | chr6_4:4791556-4791575 | Msa0972480:CDS | 30.0% |
| AAAAGATTCTTAACTTCCCA+AGG | - | chr6_4:4791632-4791651 | None:intergenic | 30.0% | |
| !!! | TGCAATGGTTTTATATGGTT+TGG | + | chr6_4:4791651-4791670 | Msa0972480:CDS | 30.0% |
| TTTGACACAAACAAAACCAA+AGG | - | chr6_4:4791704-4791723 | None:intergenic | 30.0% | |
| TCTTGATTCAATCTTTGGAT+CGG | + | chr6_4:4791741-4791760 | Msa0972480:CDS | 30.0% | |
| GCTAGAATTTACTTACATAC+CGG | - | chr6_4:4792113-4792132 | None:intergenic | 30.0% | |
| ATCAAGAAAAAGTCTGATCA+AGG | + | chr6_4:4792242-4792261 | Msa0972480:intron | 30.0% | |
| ! | TCCATTATACACATTAGCTT+CGG | - | chr6_4:4792314-4792333 | None:intergenic | 30.0% |
| CCATGAATATTGAATCAATC+AGG | - | chr6_4:4792491-4792510 | None:intergenic | 30.0% | |
| ! | CCTGATTGATTCAATATTCA+TGG | + | chr6_4:4792488-4792507 | Msa0972480:intron | 30.0% |
| ! | GATTGATTCAATATTCATGG+AGG | + | chr6_4:4792491-4792510 | Msa0972480:intron | 30.0% |
| ! | TGAACTAGTATTCTGTCTTT+TGG | - | chr6_4:4792644-4792663 | None:intergenic | 30.0% |
| CAGAATACTAGTTCAAGTAT+TGG | + | chr6_4:4792649-4792668 | Msa0972480:CDS | 30.0% | |
| TTTCTTCTTGGAAAGAGAAA+GGG | + | chr6_4:4792717-4792736 | Msa0972480:CDS | 30.0% | |
| ATAATGCTTACCTTGAAATG+TGG | - | chr6_4:4792899-4792918 | None:intergenic | 30.0% | |
| ! | ATTGTCCTTATTTGGCTTAT+GGG | - | chr6_4:4793122-4793141 | None:intergenic | 30.0% |
| TGAAAACTGTAAATGTGGTT+AGG | - | chr6_4:4793168-4793187 | None:intergenic | 30.0% | |
| ! | AACATTGTTTTCGGTATTTC+TGG | - | chr6_4:4793257-4793276 | None:intergenic | 30.0% |
| ATGTATTACATACAACAGTG+AGG | - | chr6_4:4793334-4793353 | None:intergenic | 30.0% | |
| ! | ACATATTTTATCTGTGAGGA+TGG | + | chr6_4:4793350-4793369 | Msa0972480:intron | 30.0% |
| AAGATGAGAATCTTCTAACA+AGG | + | chr6_4:4793478-4793497 | Msa0972480:CDS | 30.0% | |
| !! | GGCTATTTCTTGAATTTCTT+CGG | + | chr6_4:4793552-4793571 | Msa0972480:CDS | 30.0% |
| TTGAATTTCTTCGGATTCAA+TGG | + | chr6_4:4793561-4793580 | Msa0972480:CDS | 30.0% | |
| TTTGTAAGCTTCATAGGATT+CGG | - | chr6_4:4793739-4793758 | None:intergenic | 30.0% | |
| ACAAAAAACAACAACATCGT+TGG | + | chr6_4:4793754-4793773 | Msa0972480:CDS | 30.0% | |
| !!! | TGTAACATGGTTTTAGATTG+CGG | + | chr6_4:4793870-4793889 | Msa0972480:intron | 30.0% |
| TGATTTATTAGCATAAGCAC+TGG | + | chr6_4:4793949-4793968 | Msa0972480:intron | 30.0% | |
| TATTGGTATAAGAACTTGTG+AGG | - | chr6_4:4794289-4794308 | None:intergenic | 30.0% | |
| TTGCAAAAATTTGGGGATAA+TGG | - | chr6_4:4794489-4794508 | None:intergenic | 30.0% | |
| CTTGTACAAATTTCTAAGCA+TGG | - | chr6_4:4794525-4794544 | None:intergenic | 30.0% | |
| ! | TTTTTGTGCAGATATCAGTA+TGG | + | chr6_4:4794566-4794585 | Msa0972480:intron | 30.0% |
| AATAGAGTGAATGAGTAGAA+GGG | - | chr6_4:4794643-4794662 | None:intergenic | 30.0% | |
| TCAGGTATGAACATTGTTAA+GGG | - | chr6_4:4794679-4794698 | None:intergenic | 30.0% | |
| TTCAGGTATGAACATTGTTA+AGG | - | chr6_4:4794680-4794699 | None:intergenic | 30.0% | |
| TGTTCTCGAAAAGAAGATAA+GGG | - | chr6_4:4794795-4794814 | None:intergenic | 30.0% | |
| CAAAATTCAGAAAACAGAAG+TGG | + | chr6_4:4795014-4795033 | Msa0972480:CDS | 30.0% | |
| !!! | TTTCTTGCTTTTTCAAGGTT+TGG | + | chr6_4:4795146-4795165 | Msa0972480:CDS | 30.0% |
| AACAAGTTAGCTGAAAAACA+AGG | + | chr6_4:4795202-4795221 | Msa0972480:exon | 30.0% | |
| TAATTTGACAGGCTAAAGCA+AGG | - | chr6_4:4790923-4790942 | None:intergenic | 35.0% | |
| ! | CAACATCGTTGATGAATGAA+GGG | - | chr6_4:4791137-4791156 | None:intergenic | 35.0% |
| ! | TCAACATCGTTGATGAATGA+AGG | - | chr6_4:4791138-4791157 | None:intergenic | 35.0% |
| GTTGCATTTGTAACTGTGTT+TGG | - | chr6_4:4791263-4791282 | None:intergenic | 35.0% | |
| TTGTTACATGTTCATGACGA+TGG | + | chr6_4:4791305-4791324 | Msa0972480:CDS | 35.0% | |
| AACTTCTGACATGTTTGACA+TGG | + | chr6_4:4791414-4791433 | Msa0972480:CDS | 35.0% | |
| ATTTGCATGTGATTCAACCT+TGG | + | chr6_4:4791612-4791631 | Msa0972480:CDS | 35.0% | |
| TTTGCATGTGATTCAACCTT+GGG | + | chr6_4:4791613-4791632 | Msa0972480:CDS | 35.0% | |
| AGAAGATTATGTTGCTCCTT+TGG | + | chr6_4:4791685-4791704 | Msa0972480:CDS | 35.0% | |
| ! | TTCTTTGTCTTGGATGCTTT+TGG | + | chr6_4:4791768-4791787 | Msa0972480:CDS | 35.0% |
| TAAGCATCATCATCAATCCT+AGG | - | chr6_4:4791815-4791834 | None:intergenic | 35.0% | |
| ! | TGATGATGCTTATGATGTTG+AGG | + | chr6_4:4791823-4791842 | Msa0972480:CDS | 35.0% |
| TCCAATGTGTAATGAAAGAG+AGG | + | chr6_4:4791880-4791899 | Msa0972480:CDS | 35.0% | |
| ACCTCTCTTTCATTACACAT+TGG | - | chr6_4:4791884-4791903 | None:intergenic | 35.0% | |
| TATTAGCAAGAGTTCGAACT+CGG | + | chr6_4:4792142-4792161 | Msa0972480:intron | 35.0% | |
| TTCTATCTTCACCGGTAATT+TGG | + | chr6_4:4792179-4792198 | Msa0972480:intron | 35.0% | |
| CCAGTCAAATTCCAAATTAC+CGG | - | chr6_4:4792193-4792212 | None:intergenic | 35.0% | |
| ! | GTAATTTGGAATTTGACTGG+TGG | + | chr6_4:4792193-4792212 | Msa0972480:intron | 35.0% |
| ! | CCATTATACACATTAGCTTC+GGG | - | chr6_4:4792313-4792332 | None:intergenic | 35.0% |
| CAGAGGGTTAAGACAAAAAA+TGG | - | chr6_4:4792390-4792409 | None:intergenic | 35.0% | |
| ACAGATGCTTATCAAAGATG+AGG | + | chr6_4:4792694-4792713 | Msa0972480:CDS | 35.0% | |
| TCAAAGATGAGGTTTCTTCT+TGG | + | chr6_4:4792705-4792724 | Msa0972480:CDS | 35.0% | |
| GTTTCTTCTTGGAAAGAGAA+AGG | + | chr6_4:4792716-4792735 | Msa0972480:CDS | 35.0% | |
| TTCTTCTTGGAAAGAGAAAG+GGG | + | chr6_4:4792718-4792737 | Msa0972480:CDS | 35.0% | |
| AGACATAGATTGATCAGAAC+TGG | + | chr6_4:4792755-4792774 | Msa0972480:CDS | 35.0% | |
| ATCAGAACTGGTTATAAAGC+AGG | + | chr6_4:4792767-4792786 | Msa0972480:CDS | 35.0% | |
| TCAGAACTGGTTATAAAGCA+GGG | + | chr6_4:4792768-4792787 | Msa0972480:CDS | 35.0% | |
| !!! | CAATGCAAACATGCTACTTT+TGG | + | chr6_4:4793050-4793069 | Msa0972480:intron | 35.0% |
| ! | CATTGTCCTTATTTGGCTTA+TGG | - | chr6_4:4793123-4793142 | None:intergenic | 35.0% |
| AATGTGGTTAGGAAGTAAAC+AGG | - | chr6_4:4793157-4793176 | None:intergenic | 35.0% | |
| GACACTGAAAACTGTAAATG+TGG | - | chr6_4:4793173-4793192 | None:intergenic | 35.0% | |
| ATGTGATGAATGACAGAAGA+CGG | + | chr6_4:4793207-4793226 | Msa0972480:intron | 35.0% | |
| TTATCTGTGAGGATGGAATA+AGG | + | chr6_4:4793357-4793376 | Msa0972480:intron | 35.0% | |
| CAAAGTCACGAAAATCGTTA+GGG | - | chr6_4:4793402-4793421 | None:intergenic | 35.0% | |
| ACAAAGTCACGAAAATCGTT+AGG | - | chr6_4:4793403-4793422 | None:intergenic | 35.0% | |
| TTTATAGGGAAAACCTGACT+TGG | + | chr6_4:4793422-4793441 | Msa0972480:intron | 35.0% | |
| TTATAGGGAAAACCTGACTT+GGG | + | chr6_4:4793423-4793442 | Msa0972480:intron | 35.0% | |
| ! | CAACTTGTGTTTTCACTTTG+AGG | + | chr6_4:4793512-4793531 | Msa0972480:CDS | 35.0% |
| TTAGAGCTCATTTGAATGGA+TGG | + | chr6_4:4793670-4793689 | Msa0972480:CDS | 35.0% | |
| TTGTAAGCTTCATAGGATTC+GGG | - | chr6_4:4793738-4793757 | None:intergenic | 35.0% | |
| CATAGCCTAAAAAGTTGCAT+AGG | - | chr6_4:4793789-4793808 | None:intergenic | 35.0% | |
| ! | TGCTGCAACATAAGGTTTTA+GGG | + | chr6_4:4793901-4793920 | Msa0972480:intron | 35.0% |
| ! | GTTTGACTTTAGGCTCTATT+TGG | + | chr6_4:4794097-4794116 | Msa0972480:intron | 35.0% |
| TTTATAAGCTCTCCACCATA+TGG | - | chr6_4:4794147-4794166 | None:intergenic | 35.0% | |
| TTTATCCAAACAAGTCCTAG+AGG | + | chr6_4:4794423-4794442 | Msa0972480:intron | 35.0% | |
| ! | CAAAAATTTGGGGATAATGG+TGG | - | chr6_4:4794486-4794505 | None:intergenic | 35.0% |
| GAATAGAGTGAATGAGTAGA+AGG | - | chr6_4:4794644-4794663 | None:intergenic | 35.0% | |
| ACATAACAGATTACCCAAAG+GGG | - | chr6_4:4794712-4794731 | None:intergenic | 35.0% | |
| GACATAACAGATTACCCAAA+GGG | - | chr6_4:4794713-4794732 | None:intergenic | 35.0% | |
| TTAAGAACGACATGACGATA+GGG | - | chr6_4:4794735-4794754 | None:intergenic | 35.0% | |
| TTTAAGAACGACATGACGAT+AGG | - | chr6_4:4794736-4794755 | None:intergenic | 35.0% | |
| GTGTTCTCGAAAAGAAGATA+AGG | - | chr6_4:4794796-4794815 | None:intergenic | 35.0% | |
| !! | TCTTTTCGAGAACACAATGT+CGG | + | chr6_4:4794801-4794820 | Msa0972480:CDS | 35.0% |
| GGTTACAAAGTTCAATGCAA+TGG | + | chr6_4:4794822-4794841 | Msa0972480:CDS | 35.0% | |
| AAGTTCAATGCAATGGTTTC+TGG | + | chr6_4:4794829-4794848 | Msa0972480:CDS | 35.0% | |
| ! | GTTTCTGGACTATTTCAACT+AGG | + | chr6_4:4794844-4794863 | Msa0972480:CDS | 35.0% |
| !! | AACTAGGAAGTGCTTATGAA+TGG | + | chr6_4:4794860-4794879 | Msa0972480:CDS | 35.0% |
| !! | ACTAGGAAGTGCTTATGAAT+GGG | + | chr6_4:4794861-4794880 | Msa0972480:CDS | 35.0% |
| GTTGAAAGAACTATATCAGC+TGG | + | chr6_4:4795288-4795307 | Msa0972480:three_prime_UTR | 35.0% | |
| ! | AGAGAGAGCTCTAATTTGAC+AGG | - | chr6_4:4790934-4790953 | None:intergenic | 40.0% |
| TGTTTGACATGGTTGACCAA+TGG | + | chr6_4:4791425-4791444 | Msa0972480:CDS | 40.0% | |
| ! | TCTTGGATGCTTTTGGATCA+AGG | + | chr6_4:4791775-4791794 | Msa0972480:CDS | 40.0% |
| AGGTTAAGAAGTTGAAGCCT+AGG | + | chr6_4:4791795-4791814 | Msa0972480:CDS | 40.0% | |
| AGAACCATAGGAAAGCTCAA+AGG | - | chr6_4:4791851-4791870 | None:intergenic | 40.0% | |
| GGAATCTGAACAAGAACCAT+AGG | - | chr6_4:4791863-4791882 | None:intergenic | 40.0% | |
| CGGTGAAGATAGAATCGATT+GGG | - | chr6_4:4792173-4792192 | None:intergenic | 40.0% | |
| ! | CCAATCGATTCTATCTTCAC+CGG | + | chr6_4:4792171-4792190 | Msa0972480:intron | 40.0% |
| ! | CCGGTAATTTGGAATTTGAC+TGG | + | chr6_4:4792190-4792209 | Msa0972480:intron | 40.0% |
| CCCGAAGCTAATGTGTATAA+TGG | + | chr6_4:4792310-4792329 | Msa0972480:intron | 40.0% | |
| TCTTAACCCTCTGATTCTCA+AGG | + | chr6_4:4792397-4792416 | Msa0972480:intron | 40.0% | |
| CTTAACCCTCTGATTCTCAA+GGG | + | chr6_4:4792398-4792417 | Msa0972480:intron | 40.0% | |
| CATTTCCCTTGAGAATCAGA+GGG | - | chr6_4:4792406-4792425 | None:intergenic | 40.0% | |
| ACATTTCCCTTGAGAATCAG+AGG | - | chr6_4:4792407-4792426 | None:intergenic | 40.0% | |
| TGACCAATGATTGTCCAACT+AGG | + | chr6_4:4792448-4792467 | Msa0972480:intron | 40.0% | |
| GACCAATGATTGTCCAACTA+GGG | + | chr6_4:4792449-4792468 | Msa0972480:intron | 40.0% | |
| AACCCTAGTTGGACAATCAT+TGG | - | chr6_4:4792454-4792473 | None:intergenic | 40.0% | |
| ATCGTAATTCGAACCCTAGT+TGG | - | chr6_4:4792465-4792484 | None:intergenic | 40.0% | |
| ATGGAGGCTTATTAGCCATT+TGG | + | chr6_4:4792507-4792526 | Msa0972480:intron | 40.0% | |
| TGGAGGCTTATTAGCCATTT+GGG | + | chr6_4:4792508-4792527 | Msa0972480:intron | 40.0% | |
| AACAAGTGTTTGAGCCCAAA+TGG | - | chr6_4:4792525-4792544 | None:intergenic | 40.0% | |
| GTCAGCATCAGATGTAACAT+TGG | - | chr6_4:4792551-4792570 | None:intergenic | 40.0% | |
| TGCATGAGGTAATCAGGATT+TGG | - | chr6_4:4792869-4792888 | None:intergenic | 40.0% | |
| ! | ATGGTTTGCATGAGGTAATC+AGG | - | chr6_4:4792875-4792894 | None:intergenic | 40.0% |
| ! | AATGTGGAATGGTTTGCATG+AGG | - | chr6_4:4792883-4792902 | None:intergenic | 40.0% |
| GCAAACCATTCCACATTTCA+AGG | + | chr6_4:4792886-4792905 | Msa0972480:CDS | 40.0% | |
| GCTTACCTTGAAATGTGGAA+TGG | - | chr6_4:4792894-4792913 | None:intergenic | 40.0% | |
| CAAGACCCATAAGCCAAATA+AGG | + | chr6_4:4793114-4793133 | Msa0972480:intron | 40.0% | |
| GAGGTTGAACAACAAGTGAA+TGG | + | chr6_4:4793531-4793550 | Msa0972480:CDS | 40.0% | |
| TGTTTGGAGGATTAAGGCTT+TGG | + | chr6_4:4793593-4793612 | Msa0972480:CDS | 40.0% | |
| !! | ATTAAGGCTTTGGAGGAATC+AGG | + | chr6_4:4793603-4793622 | Msa0972480:CDS | 40.0% |
| GCTGTTAGAGCTCATTTGAA+TGG | + | chr6_4:4793666-4793685 | Msa0972480:CDS | 40.0% | |
| ! | CTGGTCCTATGCAACTTTTT+AGG | + | chr6_4:4793781-4793800 | Msa0972480:CDS | 40.0% |
| ! | CTGCTGCAACATAAGGTTTT+AGG | + | chr6_4:4793900-4793919 | Msa0972480:intron | 40.0% |
| TTTACCAAGCCCTTACCATA+TGG | + | chr6_4:4794129-4794148 | Msa0972480:intron | 40.0% | |
| GCTGAAAACAGTTTGTGATC+AGG | + | chr6_4:4794230-4794249 | Msa0972480:intron | 40.0% | |
| CCTTATCTGAGCTTGTCTAT+TGG | - | chr6_4:4794306-4794325 | None:intergenic | 40.0% | |
| CCAATAGACAAGCTCAGATA+AGG | + | chr6_4:4794303-4794322 | Msa0972480:intron | 40.0% | |
| GCAGATATCAGTATGGAAGA+AGG | + | chr6_4:4794573-4794592 | Msa0972480:intron | 40.0% | |
| TGAATCAGAACTACCCCTTT+GGG | + | chr6_4:4794696-4794715 | Msa0972480:CDS | 40.0% | |
| GGACATAACAGATTACCCAA+AGG | - | chr6_4:4794714-4794733 | None:intergenic | 40.0% | |
| !! | AAAGGGACTGATTTTGGTGA+TGG | - | chr6_4:4794766-4794785 | None:intergenic | 40.0% |
| !! | ACAAGGAAAGGGACTGATTT+TGG | - | chr6_4:4794772-4794791 | None:intergenic | 40.0% |
| GAAGATAAGGGACAAGGAAA+GGG | - | chr6_4:4794783-4794802 | None:intergenic | 40.0% | |
| AGAAGATAAGGGACAAGGAA+AGG | - | chr6_4:4794784-4794803 | None:intergenic | 40.0% | |
| CGAAAAGAAGATAAGGGACA+AGG | - | chr6_4:4794789-4794808 | None:intergenic | 40.0% | |
| TGGGTTGTGACAAAGAAAAC+AGG | + | chr6_4:4794880-4794899 | Msa0972480:CDS | 40.0% | |
| TCTGAGTGTCTTCTATGCAA+TGG | - | chr6_4:4794973-4794992 | None:intergenic | 40.0% | |
| GCATAGAAGACACTCAGAAT+CGG | + | chr6_4:4794975-4794994 | Msa0972480:CDS | 40.0% | |
| CATAGAAGACACTCAGAATC+GGG | + | chr6_4:4794976-4794995 | Msa0972480:CDS | 40.0% | |
| ! | GAATCGGGTTTGGAGTTATT+AGG | + | chr6_4:4794991-4795010 | Msa0972480:CDS | 40.0% |
| ! | AGAAGTCTTTTAGCAGCACA+TGG | + | chr6_4:4795111-4795130 | Msa0972480:CDS | 40.0% |
| AGGTTTGGCATTCCTTGTTA+TGG | + | chr6_4:4795161-4795180 | Msa0972480:CDS | 40.0% | |
| ! | GGTTTGGCATTCCTTGTTAT+GGG | + | chr6_4:4795162-4795181 | Msa0972480:CDS | 40.0% |
| TCAAGTCCAAACCCATAACA+AGG | - | chr6_4:4795176-4795195 | None:intergenic | 40.0% | |
| GTTATGGGTTTGGACTTGAT+TGG | + | chr6_4:4795177-4795196 | Msa0972480:CDS | 40.0% | |
| !! | GATCGGCTTGTTCTTTGTCT+TGG | + | chr6_4:4791758-4791777 | Msa0972480:CDS | 45.0% |
| GGATCCTTTGAGCTTTCCTA+TGG | + | chr6_4:4791844-4791863 | Msa0972480:CDS | 45.0% | |
| CTCGGAATCAGAGAGTTAGA+GGG | - | chr6_4:4792051-4792070 | None:intergenic | 45.0% | |
| TCTCGGAATCAGAGAGTTAG+AGG | - | chr6_4:4792052-4792071 | None:intergenic | 45.0% | |
| ! | CTGGTAATCTGGAGTTAGAC+CGG | + | chr6_4:4792091-4792110 | Msa0972480:intron | 45.0% |
| CCGGTGAAGATAGAATCGAT+TGG | - | chr6_4:4792174-4792193 | None:intergenic | 45.0% | |
| TTTGACTGGTGGAGTTTGAC+TGG | + | chr6_4:4792204-4792223 | Msa0972480:intron | 45.0% | |
| TTCCAACCAAACTGTGAGCT+AGG | + | chr6_4:4792269-4792288 | Msa0972480:intron | 45.0% | |
| TCCAACCAAACTGTGAGCTA+GGG | + | chr6_4:4792270-4792289 | Msa0972480:intron | 45.0% | |
| GATTACCCTAGCTCACAGTT+TGG | - | chr6_4:4792278-4792297 | None:intergenic | 45.0% | |
| !! | GTGCTGCTTGTCAACTTGAT+TGG | + | chr6_4:4792618-4792637 | Msa0972480:CDS | 45.0% |
| GCAATGGTTAGCATTCTCCT+TGG | - | chr6_4:4792929-4792948 | None:intergenic | 45.0% | |
| AGAATGCTAACCATTGCCCT+TGG | + | chr6_4:4792932-4792951 | Msa0972480:intron | 45.0% | |
| GAATGCTAACCATTGCCCTT+GGG | + | chr6_4:4792933-4792952 | Msa0972480:intron | 45.0% | |
| AATGCTAACCATTGCCCTTG+GGG | + | chr6_4:4792934-4792953 | Msa0972480:intron | 45.0% | |
| TTCCTTAACCATTGCCCTCA+GGG | + | chr6_4:4793074-4793093 | Msa0972480:intron | 45.0% | |
| !! | TGGGACTAGTTCAAGCAAGA+TGG | + | chr6_4:4793442-4793461 | Msa0972480:CDS | 45.0% |
| TTCGGATTCAATGGAACAGC+TGG | + | chr6_4:4793570-4793589 | Msa0972480:CDS | 45.0% | |
| TCAATGGAACAGCTGGTGTT+TGG | + | chr6_4:4793577-4793596 | Msa0972480:CDS | 45.0% | |
| AGCTGGTGTTTGGAGGATTA+AGG | + | chr6_4:4793587-4793606 | Msa0972480:CDS | 45.0% | |
| ! | TTGGAGGATTAAGGCTTTGG+AGG | + | chr6_4:4793596-4793615 | Msa0972480:CDS | 45.0% |
| GTTGGAAAGGACAACAGTTG+AGG | + | chr6_4:4793632-4793651 | Msa0972480:CDS | 45.0% | |
| AAGGACAACAGTTGAGGACA+TGG | + | chr6_4:4793638-4793657 | Msa0972480:CDS | 45.0% | |
| CAACAACATCGTTGGCATTC+TGG | + | chr6_4:4793762-4793781 | Msa0972480:CDS | 45.0% | |
| TCCTGCTGTATTAACTGCCA+AGG | + | chr6_4:4793812-4793831 | Msa0972480:CDS | 45.0% | |
| ACCTTGGCAGTTAATACAGC+AGG | - | chr6_4:4793816-4793835 | None:intergenic | 45.0% | |
| TCAGATGCTGCTGCAACATA+AGG | + | chr6_4:4793893-4793912 | Msa0972480:intron | 45.0% | |
| AGCTCTCCACCATATGGTAA+GGG | - | chr6_4:4794141-4794160 | None:intergenic | 45.0% | |
| AAGCTCTCCACCATATGGTA+AGG | - | chr6_4:4794142-4794161 | None:intergenic | 45.0% | |
| !! | AGAGACCTCTAGGACTTGTT+TGG | - | chr6_4:4794431-4794450 | None:intergenic | 45.0% |
| TTGCAATAGCAGAGACCTCT+AGG | - | chr6_4:4794441-4794460 | None:intergenic | 45.0% | |
| !! | CAAAGGGGTAGTTCTGATTC+AGG | - | chr6_4:4794697-4794716 | None:intergenic | 45.0% |
| CTGAATCAGAACTACCCCTT+TGG | + | chr6_4:4794695-4794714 | Msa0972480:CDS | 45.0% | |
| !!! | GGACTGATTTTGGTGATGGA+AGG | - | chr6_4:4794762-4794781 | None:intergenic | 45.0% |
| AAGACACTCAGAATCGGGTT+TGG | + | chr6_4:4794981-4795000 | Msa0972480:CDS | 45.0% | |
| ! | GGCATTCCTTGTTATGGGTT+TGG | + | chr6_4:4795167-4795186 | Msa0972480:CDS | 45.0% |
| !! | TAAAAATAGAAATATAATAT+TGG | + | chr6_4:4792972-4792991 | Msa0972480:intron | 5.0% |
| TGATTCCGAGAGCGAGCAAA+GGG | + | chr6_4:4792061-4792080 | Msa0972480:intron | 50.0% | |
| ACCCTAGCTCACAGTTTGGT+TGG | - | chr6_4:4792274-4792293 | None:intergenic | 50.0% | |
| CTTCCTTAACCATTGCCCTC+AGG | + | chr6_4:4793073-4793092 | Msa0972480:intron | 50.0% | |
| GCTTGAACTAGTCCCAAGTC+AGG | - | chr6_4:4793438-4793457 | None:intergenic | 50.0% | |
| ATGGAACAGCTGGTGTTTGG+AGG | + | chr6_4:4793580-4793599 | Msa0972480:CDS | 50.0% | |
| !! | AAGGCTTTGGAGGAATCAGG+CGG | + | chr6_4:4793606-4793625 | Msa0972480:CDS | 50.0% |
| ! | AATCAGGCGGTTGGTTGGAA+AGG | + | chr6_4:4793619-4793638 | Msa0972480:CDS | 50.0% |
| ACCAAGCCCTTACCATATGG+TGG | + | chr6_4:4794132-4794151 | Msa0972480:intron | 50.0% | |
| TCCACCATATGGTAAGGGCT+TGG | - | chr6_4:4794136-4794155 | None:intergenic | 50.0% | |
| ! | AGGCTGTTTCAGAGAGCTTG+TGG | - | chr6_4:4794269-4794288 | None:intergenic | 50.0% |
| CTGATTCCGAGAGCGAGCAA+AGG | + | chr6_4:4792060-4792079 | Msa0972480:intron | 55.0% | |
| GATTCCGAGAGCGAGCAAAG+GGG | + | chr6_4:4792062-4792081 | Msa0972480:intron | 55.0% | |
| AACCATTGCCCTTGGGGCAT+TGG | + | chr6_4:4792940-4792959 | Msa0972480:intron | 55.0% | |
| ATCCAATGCCCCAAGGGCAA+TGG | - | chr6_4:4792945-4792964 | None:intergenic | 55.0% | |
| !! | TGCCCTTGGGGCATTGGATA+AGG | + | chr6_4:4792946-4792965 | Msa0972480:intron | 55.0% |
| !! | GCCCTTGGGGCATTGGATAA+GGG | + | chr6_4:4792947-4792966 | Msa0972480:intron | 55.0% |
| CCCCTTATCCAATGCCCCAA+GGG | - | chr6_4:4792951-4792970 | None:intergenic | 55.0% | |
| !! | CCCTTGGGGCATTGGATAAG+GGG | + | chr6_4:4792948-4792967 | Msa0972480:intron | 55.0% |
| TCCCCTTATCCAATGCCCCA+AGG | - | chr6_4:4792952-4792971 | None:intergenic | 55.0% | |
| AGCCCTGAGGGCAATGGTTA+AGG | - | chr6_4:4793079-4793098 | None:intergenic | 55.0% | |
| ! | CTTTGGAGGAATCAGGCGGT+TGG | + | chr6_4:4793610-4793629 | Msa0972480:CDS | 55.0% |
| ! | AGGGGCTCGCACTGGTAATC+TGG | + | chr6_4:4792080-4792099 | Msa0972480:intron | 60.0% |
| AACCATTGCCCTCAGGGCTC+AGG | + | chr6_4:4793080-4793099 | Msa0972480:intron | 60.0% | |
| ACCATTGCCCTCAGGGCTCA+GGG | + | chr6_4:4793081-4793100 | Msa0972480:intron | 60.0% | |
| ACCATTGCCCTGAGCCCTGA+GGG | - | chr6_4:4793091-4793110 | None:intergenic | 60.0% | |
| AACCATTGCCCTGAGCCCTG+AGG | - | chr6_4:4793092-4793111 | None:intergenic | 60.0% | |
| GGAGGAATCAGGCGGTTGGT+TGG | + | chr6_4:4793614-4793633 | Msa0972480:CDS | 60.0% | |
| CGAGCCCCTTTGCTCGCTCT+CGG | - | chr6_4:4792069-4792088 | None:intergenic | 65.0% | |
| GCGAGCAAAGGGGCTCGCAC+TGG | + | chr6_4:4792072-4792091 | Msa0972480:intron | 70.0% | |
| GCCCTGAGCCCTGAGGGCAA+TGG | - | chr6_4:4793085-4793104 | None:intergenic | 70.0% | |
| GCCCTCAGGGCTCAGGGCAA+TGG | + | chr6_4:4793087-4793106 | Msa0972480:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 4790877 | 4795566 | 4790877 | ID=Msa0972480;Name=Msa0972480 |
| chr6_4 | mRNA | 4790877 | 4795566 | 4790877 | ID=Msa0972480-mRNA-1;Parent=Msa0972480;Name=Msa0972480-mRNA-1;_AED=0.01;_eAED=0.01;_QI=377|1|1|1|1|1|4|351|666 |
| chr6_4 | exon | 4790877 | 4791901 | 4790877 | ID=Msa0972480-mRNA-1:exon:2050;Parent=Msa0972480-mRNA-1 |
| chr6_4 | exon | 4792599 | 4792907 | 4792599 | ID=Msa0972480-mRNA-1:exon:2051;Parent=Msa0972480-mRNA-1 |
| chr6_4 | exon | 4793429 | 4793833 | 4793429 | ID=Msa0972480-mRNA-1:exon:2052;Parent=Msa0972480-mRNA-1 |
| chr6_4 | exon | 4794577 | 4795566 | 4794577 | ID=Msa0972480-mRNA-1:exon:2053;Parent=Msa0972480-mRNA-1 |
| chr6_4 | five_prime_UTR | 4790877 | 4791253 | 4790877 | ID=Msa0972480-mRNA-1:five_prime_utr;Parent=Msa0972480-mRNA-1 |
| chr6_4 | CDS | 4791254 | 4791901 | 4791254 | ID=Msa0972480-mRNA-1:cds;Parent=Msa0972480-mRNA-1 |
| chr6_4 | CDS | 4792599 | 4792907 | 4792599 | ID=Msa0972480-mRNA-1:cds;Parent=Msa0972480-mRNA-1 |
| chr6_4 | CDS | 4793429 | 4793833 | 4793429 | ID=Msa0972480-mRNA-1:cds;Parent=Msa0972480-mRNA-1 |
| chr6_4 | CDS | 4794577 | 4795215 | 4794577 | ID=Msa0972480-mRNA-1:cds;Parent=Msa0972480-mRNA-1 |
| chr6_4 | three_prime_UTR | 4795216 | 4795566 | 4795216 | ID=Msa0972480-mRNA-1:three_prime_utr;Parent=Msa0972480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
