AlfalfaGEDB | Msa0972480

M. sativa cultivar zhongmu-4 / Msa0972480

KEGG: K20887
GO: GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0031984 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0071944 GO:0097708 GO:0098791
PFAM: PF13632.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0972480	XP_013450865.1	99.399	666	4	0	1	666	1	666	0.0	1365

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0972480	sp\|Q9LJP4\|CSLC4_ARATH	72.635	687	153	7	1	666	1	673	0.0	1015

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0972480	A0A072UGL0	99.399	666	4	0	1	666	1	666	0.0	1365

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0101240	Msa0972480	0.801091	1.060194e-48	-8.615850e-47
Msa0194890	Msa0972480	0.812501	4.106524e-51	-8.615850e-47
Msa0865970	Msa0972480	0.801201	1.006691e-48	-8.615850e-47
Msa0903170	Msa0972480	0.979723	1.343529e-148	-8.615850e-47
Msa0972480	Msa1078550	0.800755	1.241659e-48	-8.615850e-47
Msa0972480	Msa1078560	0.805444	1.330712e-49	-8.615850e-47
Msa0972480	Msa1189820	0.806640	7.457898e-50	-8.615850e-47
Msa0972480	Msa1243920	0.827159	1.824623e-54	-8.615850e-47
Msa0972480	Msa1268530	0.801135	1.038846e-48	-8.615850e-47
Msa0972480	Msa1284990	0.833518	5.092662e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0972480	MtrunA17_Chr6g0451381	99.399	666	4	0	1	666	1	666	0.0	1365
Msa0972480	MtrunA17_Chr4g0000581	69.162	668	184	7	15	666	38	699	0.0	926
Msa0972480	MtrunA17_Chr3g0139081	67.013	673	205	7	7	666	19	687	0.0	909
Msa0972480	MtrunA17_Chr3g0135191	66.311	656	187	9	35	665	51	697	0.0	847
Msa0972480	MtrunA17_Chr8g0339101	64.992	637	216	4	34	666	69	702	0.0	830
Msa0972480	MtrunA17_Chr1g0179381	42.264	530	269	6	139	662	18	516	4.53e-149	442
Msa0972480	MtrunA17_Chr1g0179441	42.075	530	271	4	139	662	18	517	8.58e-148	439
Msa0972480	MtrunA17_Chr7g0265711	41.431	531	275	4	138	662	26	526	5.37e-145	432
Msa0972480	MtrunA17_Chr1g0179421	40.189	530	281	3	139	662	18	517	6.18e-145	432
Msa0972480	MtrunA17_Chr4g0027221	41.651	545	273	11	138	665	26	542	3.25e-142	426

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0972480	AT3G28180.1	72.635	687	153	7	1	666	1	673	0.0	1015
Msa0972480	AT2G24630.1	68.713	668	187	9	15	666	29	690	0.0	912
Msa0972480	AT2G24630.2	68.713	668	187	9	15	666	29	690	0.0	912
Msa0972480	AT4G31590.1	68.684	661	191	6	21	666	33	692	0.0	901
Msa0972480	AT3G07330.1	59.647	679	244	7	8	666	14	682	0.0	820
Msa0972480	AT3G07330.2	59.647	679	244	7	8	666	14	682	0.0	820
Msa0972480	AT4G07960.1	64.060	665	210	8	22	665	42	698	0.0	815
Msa0972480	AT4G07960.2	64.060	665	210	8	22	665	42	698	0.0	815
Msa0972480	AT5G22740.1	40.968	537	277	6	138	665	27	532	3.66e-144	431
Msa0972480	AT5G03760.1	41.604	536	273	7	138	665	27	530	1.02e-142	427

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Find 130 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTCTTAACTTCCCA+AGG	0.515319	6_4:-4791629	None:intergenic
AAAAGTTGATTTGAGACCAT+TGG	0.458146	6_4:-4791441	None:intergenic
AAAATCCTAAGAACACAACA+AGG	0.736658	6_4:+4791507	Msa0972480:CDS
AAAGAACTTTAACATCATTA+AGG	0.316833	6_4:-4793704	None:intergenic
AAATTACATTCTTGTCTCTA+TGG	0.264788	6_4:-4795369	None:intergenic
AAATTAGAATCACCAATTAT+TGG	0.253424	6_4:-4795250	None:intergenic
AACTAGGAAGTGCTTATGAA+TGG	0.406621	6_4:+4794860	Msa0972480:CDS
AACTTCTGACATGTTTGACA+TGG	0.637406	6_4:+4791414	Msa0972480:CDS
AAGACACTCAGAATCGGGTT+TGG	0.439191	6_4:+4794981	Msa0972480:CDS
AAGATGAGAATCTTCTAACA+AGG	0.662993	6_4:+4793478	Msa0972480:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGAAATCTGTTATGGAATT+TGG	-	chr6_4:4791024-4791043	None:intergenic	30.0%
CAAATCAGAGAAATCTGTTA+TGG	-	chr6_4:4791031-4791050	None:intergenic	30.0%
CAGTATTTAATGTGTGTGAT+TGG	-	chr6_4:4791075-4791094	None:intergenic	30.0%
CAAGTACAAAACAGTTTACA+TGG	+	chr6_4:4791369-4791388	Msa0972480:CDS	30.0%
TCAGAAGTTTGTGAAGTTTA+AGG	-	chr6_4:4791403-4791422	None:intergenic	30.0%
AAAATCCTAAGAACACAACA+AGG	+	chr6_4:4791507-4791526	Msa0972480:CDS	30.0%
AAAAGATTCTTAACTTCCCA+AGG	-	chr6_4:4791632-4791651	None:intergenic	30.0%
TTTGACACAAACAAAACCAA+AGG	-	chr6_4:4791704-4791723	None:intergenic	30.0%
TCTTGATTCAATCTTTGGAT+CGG	+	chr6_4:4791741-4791760	Msa0972480:CDS	30.0%
GCTAGAATTTACTTACATAC+CGG	-	chr6_4:4792113-4792132	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	4790877	4795566	4790877	ID=Msa0972480;Name=Msa0972480
chr6_4	mRNA	4790877	4795566	4790877	ID=Msa0972480-mRNA-1;Parent=Msa0972480;Name=Msa0972480-mRNA-1;_AED=0.01;_eAED=0.01;_QI=377\|1\|1\|1\|1\|1\|4\|351\|666
chr6_4	exon	4790877	4791901	4790877	ID=Msa0972480-mRNA-1:exon:2050;Parent=Msa0972480-mRNA-1
chr6_4	exon	4792599	4792907	4792599	ID=Msa0972480-mRNA-1:exon:2051;Parent=Msa0972480-mRNA-1
chr6_4	exon	4793429	4793833	4793429	ID=Msa0972480-mRNA-1:exon:2052;Parent=Msa0972480-mRNA-1
chr6_4	exon	4794577	4795566	4794577	ID=Msa0972480-mRNA-1:exon:2053;Parent=Msa0972480-mRNA-1
chr6_4	five_prime_UTR	4790877	4791253	4790877	ID=Msa0972480-mRNA-1:five_prime_utr;Parent=Msa0972480-mRNA-1
chr6_4	CDS	4791254	4791901	4791254	ID=Msa0972480-mRNA-1:cds;Parent=Msa0972480-mRNA-1
chr6_4	CDS	4792599	4792907	4792599	ID=Msa0972480-mRNA-1:cds;Parent=Msa0972480-mRNA-1
chr6_4	CDS	4793429	4793833	4793429	ID=Msa0972480-mRNA-1:cds;Parent=Msa0972480-mRNA-1
chr6_4	CDS	4794577	4795215	4794577	ID=Msa0972480-mRNA-1:cds;Parent=Msa0972480-mRNA-1
chr6_4	three_prime_UTR	4795216	4795566	4795216	ID=Msa0972480-mRNA-1:three_prime_utr;Parent=Msa0972480-mRNA-1

Gene Sequence

>Msa0972480

ATGGCACCAAACACAGTTACAAATGCAACTGACAAAGTTAATGATTTCACTTTGTTACATGTTCATGACGATGGTTTGAATTCTCCAATGTTTCAAGAGAAGCAAAAAAAATCTACAAGTACAAAACAGTTTACATGGGTTATTCTCCTTAAACTTCACAAACTTCTGACATGTTTGACATGGTTGACCAATGGTCTCAAATCAACTTTTTCATTGGTCAAAAAGAGAATTTCATTATCTGATATTGGTGATGAAAATCCTAAGAACACAACAAGGTTATATAGATTCATCAAAGTGTTTCTTGTACTTTCAATTGTTGCTTTGGTTGTTGAAATCATTGCTCATTTTAATCAATGGAATTTGCATGTGATTCAACCTTGGGAAGTTAAGAATCTTTTGCAATGGTTTTATATGGTTTGGATTTCTTTTAGAGAAGATTATGTTGCTCCTTTGGTTTTGTTTGTGTCAAAATTTTGTATTGTTTTGTTCTTGATTCAATCTTTGGATCGGCTTGTTCTTTGTCTTGGATGCTTTTGGATCAAGGTTAAGAAGTTGAAGCCTAGGATTGATGATGATGCTTATGATGTTGAGGATCCTTTGAGCTTTCCTATGGTTCTTGTTCAGATTCCAATGTGTAATGAAAGAGAGGTTTATTCACAATCAATTGGTGCTGCTTGTCAACTTGATTGGCCAAAAGACAGAATACTAGTTCAAGTATTGGATGATTCAGATGATCCTAATTTACAGATGCTTATCAAAGATGAGGTTTCTTCTTGGAAAGAGAAAGGGGTCAACATTGTTTATAGACATAGATTGATCAGAACTGGTTATAAAGCAGGGAATCTTAAGTCAGCTATGTCATGTGACTATGTCAAAAACTATGAATTTGTGGCAATATTTGATGCAGATTTTCAGCCAAATCCTGATTACCTCATGCAAACCATTCCACATTTCAAGGGAAAACCTGACTTGGGACTAGTTCAAGCAAGATGGTCATATGTGAACAAAGATGAGAATCTTCTAACAAGGCTTCAAAACATCAACTTGTGTTTTCACTTTGAGGTTGAACAACAAGTGAATGGCTATTTCTTGAATTTCTTCGGATTCAATGGAACAGCTGGTGTTTGGAGGATTAAGGCTTTGGAGGAATCAGGCGGTTGGTTGGAAAGGACAACAGTTGAGGACATGGACATAGCTGTTAGAGCTCATTTGAATGGATGGAAATTTATCTACCTTAATGATGTTAAAGTTCTTTGTGAATTACCCGAATCCTATGAAGCTTACAAAAAACAACAACATCGTTGGCATTCTGGTCCTATGCAACTTTTTAGGCTATGTCTTCCTGCTGTATTAACTGCCAAGATATCAGTATGGAAGAAGGCAAACCTAATATTTTTGTTCTTCTTATTGAGGAAACTTATACTTCCCTTCTACTCATTCACTCTATTCTGCATCATACTACCCTTAACAATGTTCATACCTGAATCAGAACTACCCCTTTGGGTAATCTGTTATGTCCCTATCGTCATGTCGTTCTTAAACATCCTTCCATCACCAAAATCAGTCCCTTTCCTTGTCCCTTATCTTCTTTTCGAGAACACAATGTCGGTTACAAAGTTCAATGCAATGGTTTCTGGACTATTTCAACTAGGAAGTGCTTATGAATGGGTTGTGACAAAGAAAACAGGTAGATCATCTGAATCAGATTTGTTAGCATTAGCTGAAAGAGAATCTAAGTCTTCAAATGAAGATAAACCATTGCATAGAAGACACTCAGAATCGGGTTTGGAGTTATTAGGCAAAATTCAGAAAACAGAAGTGGTTTCTAAGAAGAAGAAAAACAAACTCTATAGGAAAGAATTAGCACTTGCTTTTCTTTTACTCACTGCTTGTGCTAGAAGTCTTTTAGCAGCACATGGTGTTCATTTCTATTTCTTGCTTTTTCAAGGTTTGGCATTCCTTGTTATGGGTTTGGACTTGATTGGTGAACAAGTTAGCTGA

Protein sequence

>Msa0972480

MAPNTVTNATDKVNDFTLLHVHDDGLNSPMFQEKQKKSTSTKQFTWVILLKLHKLLTCLTWLTNGLKSTFSLVKKRISLSDIGDENPKNTTRLYRFIKVFLVLSIVALVVEIIAHFNQWNLHVIQPWEVKNLLQWFYMVWISFREDYVAPLVLFVSKFCIVLFLIQSLDRLVLCLGCFWIKVKKLKPRIDDDAYDVEDPLSFPMVLVQIPMCNEREVYSQSIGAACQLDWPKDRILVQVLDDSDDPNLQMLIKDEVSSWKEKGVNIVYRHRLIRTGYKAGNLKSAMSCDYVKNYEFVAIFDADFQPNPDYLMQTIPHFKGKPDLGLVQARWSYVNKDENLLTRLQNINLCFHFEVEQQVNGYFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIYLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPAVLTAKISVWKKANLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPESELPLWVICYVPIVMSFLNILPSPKSVPFLVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKTGRSSESDLLALAERESKSSNEDKPLHRRHSESGLELLGKIQKTEVVSKKKKNKLYRKELALAFLLLTACARSLLAAHGVHFYFLLFQGLAFLVMGLDLIGEQVS*