Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903170 | XP_013450865.1 | 99.288 | 562 | 4 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903170 | sp|Q9LJP4|CSLC4_ARATH | 75.575 | 565 | 128 | 5 | 1 | 562 | 1 | 558 | 0.0 | 905 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051050 | Msa0903170 | 0.804961 | 1.680247e-49 | -8.615850e-47 |
| Msa0101240 | Msa0903170 | 0.804377 | 2.224832e-49 | -8.615850e-47 |
| Msa0799620 | Msa0903170 | 0.804456 | 2.141967e-49 | -8.615850e-47 |
| Msa0194860 | Msa0903170 | 0.803777 | 2.965198e-49 | -8.615850e-47 |
| Msa0194890 | Msa0903170 | 0.811401 | 7.133320e-51 | -8.615850e-47 |
| Msa0400420 | Msa0903170 | 0.816241 | 6.121214e-52 | -8.615850e-47 |
| Msa0903170 | Msa0972480 | 0.979723 | 1.343529e-148 | -8.615850e-47 |
| Msa0903170 | Msa1078550 | 0.820796 | 5.674601e-53 | -8.615850e-47 |
| Msa0903170 | Msa1078560 | 0.829156 | 6.027086e-55 | -8.615850e-47 |
| Msa0903170 | Msa1078660 | 0.805908 | 1.063669e-49 | -8.615850e-47 |
| Msa0903170 | Msa1169380 | 0.802028 | 6.812629e-49 | -8.615850e-47 |
| Msa0903170 | Msa1169460 | 0.811758 | 5.964002e-51 | -8.615850e-47 |
| Msa0903170 | Msa1243920 | 0.817101 | 3.926490e-52 | -8.615850e-47 |
| Msa0903170 | Msa1268530 | 0.800139 | 1.657765e-48 | -8.615850e-47 |
| Msa0903170 | Msa1284990 | 0.839161 | 1.869426e-57 | -8.615850e-47 |
| Msa0903170 | Msa1360420 | 0.806961 | 6.379259e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903170 | MtrunA17_Chr6g0451381 | 99.288 | 562 | 4 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1158 |
| Msa0903170 | MtrunA17_Chr4g0000581 | 71.892 | 555 | 136 | 6 | 26 | 562 | 44 | 596 | 0.0 | 825 |
| Msa0903170 | MtrunA17_Chr3g0139081 | 67.845 | 566 | 169 | 4 | 7 | 562 | 19 | 581 | 0.0 | 805 |
| Msa0903170 | MtrunA17_Chr3g0135191 | 68.498 | 546 | 154 | 6 | 35 | 562 | 51 | 596 | 0.0 | 776 |
| Msa0903170 | MtrunA17_Chr8g0339101 | 65.602 | 532 | 177 | 3 | 34 | 561 | 69 | 598 | 0.0 | 703 |
| Msa0903170 | MtrunA17_Chr1g0179441 | 47.552 | 429 | 219 | 2 | 139 | 561 | 18 | 446 | 2.51e-143 | 426 |
| Msa0903170 | MtrunA17_Chr1g0179381 | 46.853 | 429 | 222 | 3 | 139 | 561 | 18 | 446 | 2.83e-142 | 424 |
| Msa0903170 | MtrunA17_Chr7g0265711 | 47.209 | 430 | 221 | 2 | 138 | 561 | 26 | 455 | 5.05e-142 | 423 |
| Msa0903170 | MtrunA17_Chr1g0179421 | 45.688 | 429 | 227 | 2 | 139 | 561 | 18 | 446 | 8.76e-140 | 417 |
| Msa0903170 | MtrunA17_Chr1g0198111 | 51.872 | 374 | 178 | 2 | 189 | 561 | 81 | 453 | 4.54e-138 | 413 |
| Msa0903170 | MtrunA17_Chr4g0027221 | 45.497 | 433 | 224 | 4 | 138 | 561 | 26 | 455 | 6.46e-137 | 410 |
| Msa0903170 | MtrunA17_Chr7g0264621 | 46.136 | 427 | 225 | 2 | 140 | 561 | 25 | 451 | 1.00e-135 | 407 |
| Msa0903170 | MtrunA17_Chr1g0179391 | 48.254 | 315 | 162 | 1 | 248 | 561 | 1 | 315 | 4.63e-110 | 334 |
| Msa0903170 | MtrunA17_Chr4g0064791 | 50.286 | 175 | 61 | 5 | 150 | 305 | 33 | 200 | 1.36e-44 | 157 |
| Msa0903170 | MtrunA17_Chr1g0179401 | 39.316 | 117 | 66 | 1 | 139 | 250 | 18 | 134 | 4.42e-22 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0903170 | AT3G28180.1 | 75.575 | 565 | 128 | 5 | 1 | 562 | 1 | 558 | 0.0 | 905 |
| Msa0903170 | AT2G24630.1 | 69.875 | 561 | 153 | 6 | 15 | 562 | 29 | 586 | 0.0 | 820 |
| Msa0903170 | AT2G24630.2 | 69.875 | 561 | 153 | 6 | 15 | 562 | 29 | 586 | 0.0 | 820 |
| Msa0903170 | AT4G31590.1 | 70.939 | 554 | 149 | 5 | 21 | 562 | 33 | 586 | 0.0 | 818 |
| Msa0903170 | AT4G07960.1 | 66.014 | 562 | 167 | 7 | 22 | 562 | 42 | 600 | 0.0 | 719 |
| Msa0903170 | AT4G07960.2 | 66.014 | 562 | 167 | 7 | 22 | 562 | 42 | 600 | 0.0 | 719 |
| Msa0903170 | AT3G07330.1 | 60.105 | 574 | 201 | 6 | 8 | 561 | 14 | 579 | 0.0 | 704 |
| Msa0903170 | AT3G07330.2 | 60.105 | 574 | 201 | 6 | 8 | 561 | 14 | 579 | 0.0 | 704 |
| Msa0903170 | AT5G22740.1 | 46.347 | 438 | 223 | 4 | 138 | 566 | 27 | 461 | 1.54e-140 | 420 |
| Msa0903170 | AT5G03760.1 | 45.000 | 460 | 233 | 3 | 138 | 591 | 27 | 472 | 1.37e-139 | 417 |
| Msa0903170 | AT1G23480.1 | 45.940 | 431 | 224 | 3 | 139 | 561 | 50 | 479 | 3.00e-134 | 405 |
| Msa0903170 | AT1G23480.2 | 45.940 | 431 | 224 | 3 | 139 | 561 | 50 | 479 | 3.00e-134 | 405 |
| Msa0903170 | AT1G23480.3 | 50.524 | 382 | 186 | 3 | 181 | 561 | 28 | 407 | 1.01e-133 | 401 |
| Msa0903170 | AT4G13410.1 | 44.755 | 429 | 231 | 3 | 139 | 561 | 42 | 470 | 3.28e-133 | 401 |
| Msa0903170 | AT2G35650.1 | 45.561 | 428 | 227 | 2 | 140 | 561 | 51 | 478 | 9.52e-133 | 401 |
| Msa0903170 | AT2G35650.4 | 50.136 | 369 | 182 | 2 | 195 | 561 | 38 | 406 | 1.38e-130 | 393 |
| Msa0903170 | AT2G35650.2 | 50.136 | 369 | 182 | 2 | 195 | 561 | 38 | 406 | 1.38e-130 | 393 |
| Msa0903170 | AT5G16190.2 | 44.651 | 430 | 232 | 2 | 138 | 561 | 4 | 433 | 4.50e-130 | 390 |
| Msa0903170 | AT5G16190.3 | 44.651 | 430 | 232 | 2 | 138 | 561 | 4 | 433 | 2.86e-129 | 390 |
| Msa0903170 | AT1G24070.1 | 44.235 | 425 | 231 | 3 | 143 | 561 | 57 | 481 | 3.02e-129 | 392 |
| Msa0903170 | AT5G16190.1 | 49.448 | 362 | 182 | 1 | 201 | 561 | 11 | 372 | 7.13e-127 | 382 |
| Msa0903170 | AT5G16190.4 | 41.901 | 463 | 230 | 4 | 138 | 561 | 4 | 466 | 1.40e-122 | 374 |
| Msa0903170 | AT3G56000.1 | 48.485 | 363 | 183 | 3 | 203 | 561 | 92 | 454 | 1.18e-121 | 372 |
| Msa0903170 | AT4G16590.1 | 40.326 | 429 | 217 | 4 | 139 | 561 | 55 | 450 | 1.73e-109 | 340 |
| Msa0903170 | AT1G23480.4 | 49.363 | 314 | 158 | 1 | 249 | 561 | 21 | 334 | 1.12e-106 | 328 |
| Msa0903170 | AT2G35650.3 | 47.799 | 318 | 164 | 2 | 246 | 561 | 3 | 320 | 1.30e-104 | 323 |
| Msa0903170 | AT4G13410.3 | 47.078 | 308 | 162 | 1 | 255 | 561 | 2 | 309 | 5.60e-103 | 318 |
| Msa0903170 | AT4G13410.2 | 47.205 | 322 | 165 | 2 | 139 | 455 | 42 | 363 | 1.56e-100 | 312 |
| Msa0903170 | AT1G24070.2 | 47.799 | 318 | 161 | 2 | 143 | 455 | 57 | 374 | 2.64e-100 | 312 |
Find 126 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGAAGTTTGTGAAGTTTA+AGG | 0.118814 | 6_2:-273156 | None:intergenic |
| AAGTTCAATGCAATGGTTTC+TGG | 0.121832 | 6_2:+276569 | Msa0903170:CDS |
| TATAACCTTGTTGTGTTCTT+AGG | 0.143034 | 6_2:-273268 | None:intergenic |
| TTTGTTCTTGATTCAATCTT+TGG | 0.162323 | 6_2:+273492 | Msa0903170:CDS |
| TTCTTTGTCTTGGATGCTTT+TGG | 0.162589 | 6_2:+273524 | Msa0903170:CDS |
| GAGAAATCTGTTATGGAATT+TGG | 0.167874 | 6_2:-272782 | None:intergenic |
| ACAAGGAAAGGGACTGATTT+TGG | 0.216482 | 6_2:-276509 | None:intergenic |
| TTGATAAGCATCTGTAAATT+AGG | 0.220610 | 6_2:-274426 | None:intergenic |
| AGATAACTGAGATTCATTTA+AGG | 0.230517 | 6_2:-277941 | None:intergenic |
| AGATAACTGAGATTCATTTA+AGG | 0.243703 | 6_2:-278013 | None:intergenic |
| AGATCACTGAGATTCATTTA+AGG | 0.243703 | 6_2:-278085 | None:intergenic |
| TGAACTAGTATTCTGTCTTT+TGG | 0.274513 | 6_2:-274381 | None:intergenic |
| CAACAACATCGTTGGCATTC+TGG | 0.276703 | 6_2:+275502 | Msa0903170:CDS |
| AGAATTTCATTATCTGATAT+TGG | 0.285395 | 6_2:+273235 | Msa0903170:CDS |
| GAATAGAGTGAATGAGTAGA+AGG | 0.304418 | 6_2:-276381 | None:intergenic |
| AGCTGGTGTTTGGAGGATTA+AGG | 0.304743 | 6_2:+275327 | Msa0903170:CDS |
| AGAAGATTATGTTGCTCCTT+TGG | 0.310727 | 6_2:+273441 | Msa0903170:CDS |
| TGTACTTTCAATTGTTGCTT+TGG | 0.311913 | 6_2:+273312 | Msa0903170:CDS |
| AAAGAACTTTAACATCATTA+AGG | 0.316833 | 6_2:-275444 | None:intergenic |
| TTTGTAAGCTTCATAGGATT+CGG | 0.325734 | 6_2:-275476 | None:intergenic |
| TGTTTGGAGGATTAAGGCTT+TGG | 0.326554 | 6_2:+275333 | Msa0903170:CDS |
| TCAAAGATGAGGTTTCTTCT+TGG | 0.332162 | 6_2:+274445 | Msa0903170:CDS |
| GGCTATTTCTTGAATTTCTT+CGG | 0.340859 | 6_2:+275292 | Msa0903170:CDS |
| TGCATGAGGTAATCAGGATT+TGG | 0.350956 | 6_2:-274606 | None:intergenic |
| GATAACTGAGATTCATTTAA+GGG | 0.354981 | 6_2:-278012 | None:intergenic |
| GATCACTGAGATTCATTTAA+GGG | 0.359406 | 6_2:-278084 | None:intergenic |
| CAAAGGGGTAGTTCTGATTC+AGG | 0.359856 | 6_2:-276434 | None:intergenic |
| TTGAATTTCTTCGGATTCAA+TGG | 0.361556 | 6_2:+275301 | Msa0903170:CDS |
| GATAACTGAGATTCATTTAA+GGG | 0.366355 | 6_2:-277940 | None:intergenic |
| ATGGTTTGCATGAGGTAATC+AGG | 0.371179 | 6_2:-274612 | None:intergenic |
| GTGCTGCTTGTCAACTTGAT+TGG | 0.371683 | 6_2:+274358 | Msa0903170:CDS |
| CAAATCAGAGAAATCTGTTA+TGG | 0.381587 | 6_2:-272789 | None:intergenic |
| TTCAGGTATGAACATTGTTA+AGG | 0.381616 | 6_2:-276417 | None:intergenic |
| ATTAAGGCTTTGGAGGAATC+AGG | 0.382115 | 6_2:+275343 | Msa0903170:CDS |
| TTGTAAGCTTCATAGGATTC+GGG | 0.384558 | 6_2:-275475 | None:intergenic |
| GATCGGCTTGTTCTTTGTCT+TGG | 0.385003 | 6_2:+273514 | Msa0903170:CDS |
| CAAGTACAAAACAGTTTACA+TGG | 0.399324 | 6_2:+273125 | Msa0903170:CDS |
| TCAATGGAACAGCTGGTGTT+TGG | 0.399437 | 6_2:+275317 | Msa0903170:CDS |
| GTTGCATTTGTAACTGTGTT+TGG | 0.405584 | 6_2:-273016 | None:intergenic |
| AACTAGGAAGTGCTTATGAA+TGG | 0.406621 | 6_2:+276600 | Msa0903170:CDS |
| TCAACATCATTGATGAATGA+AGG | 0.406671 | 6_2:-272896 | None:intergenic |
| GCTGTTAGAGCTCATTTGAA+TGG | 0.419519 | 6_2:+275406 | Msa0903170:CDS |
| CTGAATCAGAACTACCCCTT+TGG | 0.424047 | 6_2:+276435 | Msa0903170:CDS |
| AAGGTTTATTCACAATCAAT+TGG | 0.427259 | 6_2:+274336 | Msa0903170:intron |
| TTGGAGGATTAAGGCTTTGG+AGG | 0.432850 | 6_2:+275336 | Msa0903170:CDS |
| AGACATAGATTGATCAGAAC+TGG | 0.436769 | 6_2:+274495 | Msa0903170:CDS |
| TTTGCATGTGATTCAACCTT+GGG | 0.444305 | 6_2:+273369 | Msa0903170:CDS |
| ATCAGAACTGGTTATAAAGC+AGG | 0.449774 | 6_2:+274507 | Msa0903170:CDS |
| TTCGGATTCAATGGAACAGC+TGG | 0.450845 | 6_2:+275310 | Msa0903170:CDS |
| TTGTTACATGTTCATGATGA+TGG | 0.452190 | 6_2:+273061 | Msa0903170:CDS |
| GTTTCTTCTTGGAAAGAGAA+AGG | 0.454517 | 6_2:+274456 | Msa0903170:CDS |
| CAGTATTTAATGTGTGTGAT+TGG | 0.456277 | 6_2:-272833 | None:intergenic |
| AAAAGTTGATTTGAGACCAT+TGG | 0.458146 | 6_2:-273197 | None:intergenic |
| TCAGGTATGAACATTGTTAA+GGG | 0.460385 | 6_2:-276416 | None:intergenic |
| GCAAACCATTCCACATTTCA+AGG | 0.461691 | 6_2:+274626 | Msa0903170:CDS |
| TGGTCACTGGCCGGTGCGTA+TGG | 0.462487 | 6_2:+277891 | Msa0903170:CDS |
| GGATCCTTTGAGCTTTCCTA+TGG | 0.463637 | 6_2:+273600 | Msa0903170:CDS |
| ATAGAAGCATAAACACTAAA+GGG | 0.464237 | 6_2:-272870 | None:intergenic |
| CAGAATACTAGTTCAAGTAT+TGG | 0.468734 | 6_2:+274389 | Msa0903170:CDS |
| GACATAACAGATTACCCAAA+GGG | 0.470550 | 6_2:-276450 | None:intergenic |
| AATAGAAGCATAAACACTAA+AGG | 0.482889 | 6_2:-272871 | None:intergenic |
| ACTAGGAAGTGCTTATGAAT+GGG | 0.484196 | 6_2:+276601 | Msa0903170:CDS |
| TTAGAGCTCATTTGAATGGA+TGG | 0.488550 | 6_2:+275410 | Msa0903170:CDS |
| TGAATCAGAACTACCCCTTT+GGG | 0.489082 | 6_2:+276436 | Msa0903170:CDS |
| TCTTGATTCAATCTTTGGAT+CGG | 0.494682 | 6_2:+273497 | Msa0903170:CDS |
| TGGGTTGTGACAAAGAAAAC+AGG | 0.496608 | 6_2:+276620 | Msa0903170:CDS |
| ATGGAACAGCTGGTGTTTGG+AGG | 0.497020 | 6_2:+275320 | Msa0903170:CDS |
| GCTTGAACTAGTCCCAAGTC+AGG | 0.499333 | 6_2:-275175 | None:intergenic |
| AGAAGATAAGGGACAAGGAA+AGG | 0.499401 | 6_2:-276521 | None:intergenic |
| GAGGTTGAACAACAAGTGAA+TGG | 0.500232 | 6_2:+275271 | Msa0903170:CDS |
| GCGTATGGAGAAGTATTTGT+TGG | 0.501205 | 6_2:+277906 | Msa0903170:CDS |
| TTTATAGGGAAAACCTGACT+TGG | 0.513915 | 6_2:+275162 | Msa0903170:intron |
| AGGTTAAGAAGTTGAAGCCT+AGG | 0.514390 | 6_2:+273551 | Msa0903170:CDS |
| TGTTCTCGAAAAGAAGATAA+GGG | 0.514946 | 6_2:-276532 | None:intergenic |
| AAAAGATTCTTAACTTCCCA+AGG | 0.515319 | 6_2:-273385 | None:intergenic |
| CGTATGGAGAAGTATTTGTT+GGG | 0.520638 | 6_2:+277907 | Msa0903170:CDS |
| GTGTTCTCGAAAAGAAGATA+AGG | 0.521135 | 6_2:-276533 | None:intergenic |
| CTTTGGAGGAATCAGGCGGT+TGG | 0.522058 | 6_2:+275350 | Msa0903170:CDS |
| AATAGAGTGAATGAGTAGAA+GGG | 0.524542 | 6_2:-276380 | None:intergenic |
| GGAGGAATCAGGCGGTTGGT+TGG | 0.525711 | 6_2:+275354 | Msa0903170:CDS |
| AATCAGGCGGTTGGTTGGAA+AGG | 0.526492 | 6_2:+275359 | Msa0903170:CDS |
| GAAGATAAGGGACAAGGAAA+GGG | 0.526734 | 6_2:-276520 | None:intergenic |
| TAAGCATCATCATCAATCCT+AGG | 0.529060 | 6_2:-273568 | None:intergenic |
| ACCTTGGCAGTTAATACAGC+AGG | 0.530600 | 6_2:-275553 | None:intergenic |
| ATAATGCTTACCTTGAAATG+TGG | 0.531008 | 6_2:-274636 | None:intergenic |
| TTGATATAGAGTTTGGTCAC+TGG | 0.534795 | 6_2:+277878 | Msa0903170:intron |
| GGTTACAAAGTTCAATGCAA+TGG | 0.535120 | 6_2:+276562 | Msa0903170:CDS |
| CAACATCATTGATGAATGAA+GGG | 0.540689 | 6_2:-272895 | None:intergenic |
| AGAGAGGGCTCAAATTTGAC+AGG | 0.548395 | 6_2:-272680 | None:intergenic |
| ATTTGCATGTGATTCAACCT+TGG | 0.549569 | 6_2:+273368 | Msa0903170:CDS |
| TTTAAGAACGACATGACGAT+AGG | 0.555206 | 6_2:-276473 | None:intergenic |
| TATAGAGTTTGGTCACTGGC+CGG | 0.555759 | 6_2:+277882 | Msa0903170:intron |
| GGAATCTGAACAAGAACCAT+AGG | 0.556670 | 6_2:-273616 | None:intergenic |
| GTTTCTGGACTATTTCAACT+AGG | 0.563242 | 6_2:+276584 | Msa0903170:CDS |
| TTATAGGGAAAACCTGACTT+GGG | 0.571386 | 6_2:+275163 | Msa0903170:intron |
| AAGGACAACAGTTGAGGACA+TGG | 0.574551 | 6_2:+275378 | Msa0903170:CDS |
| ACAGATGCTTATCAAAGATG+AGG | 0.575011 | 6_2:+274434 | Msa0903170:CDS |
| CGAAAAGAAGATAAGGGACA+AGG | 0.577643 | 6_2:-276526 | None:intergenic |
| ATCACTGAGATTCATTTAAG+GGG | 0.580063 | 6_2:-278083 | None:intergenic |
| ACCTCTCTTTCATTACACAT+TGG | 0.581973 | 6_2:-273637 | None:intergenic |
| TCCAATGTGTAATGAAAGAG+AGG | 0.588056 | 6_2:+273636 | Msa0903170:CDS |
| TCCTGCTGTATTAACTGCCA+AGG | 0.589090 | 6_2:+275552 | Msa0903170:CDS |
| GCTTACCTTGAAATGTGGAA+TGG | 0.591995 | 6_2:-274631 | None:intergenic |
| TTTGACACAAACAAAACCAA+AGG | 0.592147 | 6_2:-273457 | None:intergenic |
| GTTGGAAAGGACAACAGTTG+AGG | 0.595256 | 6_2:+275372 | Msa0903170:CDS |
| TGGGACTAGTTCAAGCAAGA+TGG | 0.596166 | 6_2:+275182 | Msa0903170:CDS |
| GCAGATATCAGTATGGAAGA+AGG | 0.599135 | 6_2:+276313 | Msa0903170:intron |
| TCAAGAGATTAGTCTCTGCA+TGG | 0.599284 | 6_2:+277963 | Msa0903170:CDS |
| TCGAGAGATTAGTCTCTGCA+TGG | 0.601580 | 6_2:+278035 | Msa0903170:CDS |
| ATAACTGAGATTCATTTAAG+GGG | 0.602229 | 6_2:-277939 | None:intergenic |
| ATAACTGAGATTCATTTAAG+GGG | 0.604669 | 6_2:-278011 | None:intergenic |
| TTAAGAACGACATGACGATA+GGG | 0.607062 | 6_2:-276472 | None:intergenic |
| TCAGAACTGGTTATAAAGCA+GGG | 0.612201 | 6_2:+274508 | Msa0903170:CDS |
| TGATGATGCTTATGATGTTG+AGG | 0.612756 | 6_2:+273579 | Msa0903170:CDS |
| AAATACTTCTCCATACGCAC+CGG | 0.633266 | 6_2:-277901 | None:intergenic |
| AACTTCTGACATGTTTGACA+TGG | 0.637406 | 6_2:+273170 | Msa0903170:CDS |
| TGTTTGACATGGTTGACCAA+TGG | 0.637450 | 6_2:+273181 | Msa0903170:CDS |
| AGAACCATAGGAAAGCTCAA+AGG | 0.660564 | 6_2:-273604 | None:intergenic |
| AAATTTGACAGGCTAAAGCA+AGG | 0.661199 | 6_2:-272669 | None:intergenic |
| AAGATGAGAATCTTCTAACA+AGG | 0.662993 | 6_2:+275218 | Msa0903170:CDS |
| AAGTACAAAACAGTTTACAT+GGG | 0.663618 | 6_2:+273126 | Msa0903170:CDS |
| GGACATAACAGATTACCCAA+AGG | 0.694073 | 6_2:-276451 | None:intergenic |
| AATGTGGAATGGTTTGCATG+AGG | 0.700691 | 6_2:-274620 | None:intergenic |
| AAGGCTTTGGAGGAATCAGG+CGG | 0.701186 | 6_2:+275346 | Msa0903170:CDS |
| ACATAACAGATTACCCAAAG+GGG | 0.714598 | 6_2:-276449 | None:intergenic |
| AAAATCCTAAGAACACAACA+AGG | 0.736658 | 6_2:+273263 | Msa0903170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATTGAATTTTTATGATAA+TGG | - | chr6_2:272944-272963 | None:intergenic | 15.0% |
| !!! | AAATTCAATCTTTAGATTTT+TGG | + | chr6_2:272953-272972 | Msa0903170:five_prime_UTR | 15.0% |
| !!! | TTCCAATTTTACATTATTTT+TGG | + | chr6_2:273775-273794 | Msa0903170:intron | 15.0% |
| !! | TACCAAAAATAATGTAAAAT+TGG | - | chr6_2:273780-273799 | None:intergenic | 15.0% |
| !!! | ATAATGGATTAAATTATGAT+TGG | + | chr6_2:274066-274085 | Msa0903170:intron | 15.0% |
| !! | AGAAATATAATATTGGAAAA+TGG | + | chr6_2:274719-274738 | Msa0903170:intron | 15.0% |
| !!! | AATTTTCAAAACATTGTTTT+CGG | - | chr6_2:275006-275025 | None:intergenic | 15.0% |
| !! | ATAAGAAGAACAAAAATATT+AGG | - | chr6_2:276343-276362 | None:intergenic | 15.0% |
| !!! | TTGTTTTTTATACCAATAAT+TGG | + | chr6_2:277078-277097 | Msa0903170:intron | 15.0% |
| !!! | ATTTGGTTTTTTTATTTTTG+TGG | + | chr6_2:277290-277309 | Msa0903170:intron | 15.0% |
| !! | AGAAGAAGAAAAAAAAAATT+GGG | - | chr6_2:277558-277577 | None:intergenic | 15.0% |
| !! | AAGAAGAAGAAAAAAAAAAT+TGG | - | chr6_2:277559-277578 | None:intergenic | 15.0% |
| !! | AATAGAGAGAGAAAAAAAAA+TGG | + | chr6_2:272991-273010 | Msa0903170:exon | 20.0% |
| !! | AGAATTTCATTATCTGATAT+TGG | + | chr6_2:273235-273254 | Msa0903170:CDS | 20.0% |
| !! | TTGATTCTAATCTATGATTT+AGG | + | chr6_2:273676-273695 | Msa0903170:intron | 20.0% |
| !! | ATTCAATTATGATTGCAATT+TGG | + | chr6_2:273731-273750 | Msa0903170:intron | 20.0% |
| !! | AATGTAAAATTGGAAAATCA+TGG | - | chr6_2:273770-273789 | None:intergenic | 20.0% |
| !! | ATTAAATTATGATTGGAACT+TGG | + | chr6_2:274073-274092 | Msa0903170:intron | 20.0% |
| !! | TAAGACAAAAAATGGAAAAA+TGG | - | chr6_2:274122-274141 | None:intergenic | 20.0% |
| !!! | AATTTTTCATTGTCCTTATT+TGG | - | chr6_2:274870-274889 | None:intergenic | 20.0% |
| !!! | TAATACATATTTTATCTGTG+AGG | + | chr6_2:275086-275105 | Msa0903170:intron | 20.0% |
| !! | AAAGAACTTTAACATCATTA+AGG | - | chr6_2:275447-275466 | None:intergenic | 20.0% |
| !!! | CTACTTTTTATAAACTATCT+TGG | + | chr6_2:275930-275949 | Msa0903170:intron | 20.0% |
| !! | TAATTAAGCACTTATAGTAT+AGG | - | chr6_2:276138-276157 | None:intergenic | 20.0% |
| !! | AATTTCAGTTGCAAAAATTT+GGG | - | chr6_2:276237-276256 | None:intergenic | 20.0% |
| !! | AAATTTCAGTTGCAAAAATT+TGG | - | chr6_2:276238-276257 | None:intergenic | 20.0% |
| !!! | TATTTTTGTTCTTCTTATTG+AGG | + | chr6_2:276345-276364 | Msa0903170:CDS | 20.0% |
| !! | AAATTAGAATCACCAATTAT+TGG | - | chr6_2:277093-277112 | None:intergenic | 20.0% |
| !! | TGTATAATCATAAGATGATA+AGG | + | chr6_2:277184-277203 | Msa0903170:intron | 20.0% |
| !! | GGAGAGTTATATAATTTATT+TGG | + | chr6_2:277273-277292 | Msa0903170:intron | 20.0% |
| !!! | TGTGTTTTAAATTAGAAGAA+AGG | + | chr6_2:277480-277499 | Msa0903170:intron | 20.0% |
| !!! | GATTGGTTTTGAAATATGAA+TGG | - | chr6_2:272819-272838 | None:intergenic | 25.0% |
| !! | ATAGAAGCATAAACACTAAA+GGG | - | chr6_2:272873-272892 | None:intergenic | 25.0% |
| !! | AATAGAAGCATAAACACTAA+AGG | - | chr6_2:272874-272893 | None:intergenic | 25.0% |
| ! | AAGTACAAAACAGTTTACAT+GGG | + | chr6_2:273126-273145 | Msa0903170:CDS | 25.0% |
| !!! | TCTCAAATCAACTTTTTCAT+TGG | + | chr6_2:273204-273223 | Msa0903170:CDS | 25.0% |
| !!! | TCATTGCTCATTTTAATCAA+TGG | + | chr6_2:273344-273363 | Msa0903170:CDS | 25.0% |
| !! | AAGTTAAGAATCTTTTGCAA+TGG | + | chr6_2:273392-273411 | Msa0903170:CDS | 25.0% |
| !!! | TCTTTTGCAATGGTTTTATA+TGG | + | chr6_2:273402-273421 | Msa0903170:CDS | 25.0% |
| ! | TTTGTTCTTGATTCAATCTT+TGG | + | chr6_2:273492-273511 | Msa0903170:CDS | 25.0% |
| ! | CAAACATCTTATGTGTATAT+TGG | + | chr6_2:273708-273727 | Msa0903170:intron | 25.0% |
| !! | ATGTAAGTAAATTCTAGCTA+AGG | + | chr6_2:273871-273890 | Msa0903170:intron | 25.0% |
| ! | TGGAAAATCATGTATGAATT+AGG | - | chr6_2:274102-274121 | None:intergenic | 25.0% |
| !!! | TTTGTTTTGTTTTTGAGTGA+AGG | + | chr6_2:274317-274336 | Msa0903170:intron | 25.0% |
| ! | AAGGTTTATTCACAATCAAT+TGG | + | chr6_2:274336-274355 | Msa0903170:intron | 25.0% |
| ! | TTGATAAGCATCTGTAAATT+AGG | - | chr6_2:274429-274448 | None:intergenic | 25.0% |
| ! | TGTCAAAAACTATGAATTTG+TGG | + | chr6_2:274560-274579 | Msa0903170:CDS | 25.0% |
| ! | TAAGCATTATAAATAAGCCA+AGG | + | chr6_2:274649-274668 | Msa0903170:intron | 25.0% |
| !!! | ATTTTCGTGACTTTGTTTAT+AGG | + | chr6_2:275147-275166 | Msa0903170:intron | 25.0% |
| !!! | TTTTCGTGACTTTGTTTATA+GGG | + | chr6_2:275148-275167 | Msa0903170:intron | 25.0% |
| !!! | TTGTTTTTTGTAAGCTTCAT+AGG | - | chr6_2:275485-275504 | None:intergenic | 25.0% |
| ! | AATAAGAATTAGCAATACCT+TGG | - | chr6_2:275572-275591 | None:intergenic | 25.0% |
| ! | TTCAACTTTATAGTGTAACA+TGG | + | chr6_2:275597-275616 | Msa0903170:intron | 25.0% |
| !! | TATGAACATAGTTTGACTTT+AGG | + | chr6_2:275827-275846 | Msa0903170:intron | 25.0% |
| ! | ATTTCAGTTGCAAAAATTTG+GGG | - | chr6_2:276236-276255 | None:intergenic | 25.0% |
| ! | CTTGTACAAATTTATAAGCA+TGG | - | chr6_2:276265-276284 | None:intergenic | 25.0% |
| ! | AGAAGAAAAACAAACTCTAT+AGG | + | chr6_2:276886-276905 | Msa0903170:intron | 25.0% |
| !!! | TTCTATTTCTTGCTTTTTCA+AGG | + | chr6_2:276981-277000 | Msa0903170:intron | 25.0% |
| ! | TAGTTCTTTCAACTGATATA+TGG | - | chr6_2:277121-277140 | None:intergenic | 25.0% |
| ! | AAATTACATTCTTGTCTCTA+TGG | - | chr6_2:277212-277231 | None:intergenic | 25.0% |
| ! | TTTCTAGACTTCAAATTTGT+TGG | + | chr6_2:277252-277271 | Msa0903170:intron | 25.0% |
| !! | GTTTTTCACTTATGTAAAGT+AGG | + | chr6_2:277312-277331 | Msa0903170:intron | 25.0% |
| !!! | TTTTTTCTTCTTCTTTTCCT+TGG | + | chr6_2:277564-277583 | Msa0903170:intron | 25.0% |
| !!! | TTGATTGTTTCTAACTAATG+AGG | - | chr6_2:277648-277667 | None:intergenic | 25.0% |
| ! | AAATGTGTTAAAAGTCAAAC+TGG | - | chr6_2:277744-277763 | None:intergenic | 25.0% |
| ! | ACTCTATATCAAATGGTTAA+TGG | - | chr6_2:277870-277889 | None:intergenic | 25.0% |
| ! | TAACCATTTGATATAGAGTT+TGG | + | chr6_2:277871-277890 | Msa0903170:intron | 25.0% |
| ! | ATAACTGAGATTCATTTAAG+GGG | - | chr6_2:277942-277961 | None:intergenic | 25.0% |
| ! | GATAACTGAGATTCATTTAA+GGG | - | chr6_2:277943-277962 | None:intergenic | 25.0% |
| ! | AGATAACTGAGATTCATTTA+AGG | - | chr6_2:277944-277963 | None:intergenic | 25.0% |
| ! | ATAACTGAGATTCATTTAAG+GGG | - | chr6_2:277942-277961 | None:intergenic | 25.0% |
| ! | GATAACTGAGATTCATTTAA+GGG | - | chr6_2:277943-277962 | None:intergenic | 25.0% |
| ! | AGATAACTGAGATTCATTTA+AGG | - | chr6_2:277944-277963 | None:intergenic | 25.0% |
| GAGAAATCTGTTATGGAATT+TGG | - | chr6_2:272785-272804 | None:intergenic | 30.0% | |
| CAAATCAGAGAAATCTGTTA+TGG | - | chr6_2:272792-272811 | None:intergenic | 30.0% | |
| CAGTATTTAATGTGTGTGAT+TGG | - | chr6_2:272836-272855 | None:intergenic | 30.0% | |
| CAACATCATTGATGAATGAA+GGG | - | chr6_2:272898-272917 | None:intergenic | 30.0% | |
| TCAACATCATTGATGAATGA+AGG | - | chr6_2:272899-272918 | None:intergenic | 30.0% | |
| TTGTTACATGTTCATGATGA+TGG | + | chr6_2:273061-273080 | Msa0903170:CDS | 30.0% | |
| ! | TTTTGCTTCTCTTGAAACAT+TGG | - | chr6_2:273097-273116 | None:intergenic | 30.0% |
| CAAGTACAAAACAGTTTACA+TGG | + | chr6_2:273125-273144 | Msa0903170:CDS | 30.0% | |
| TCAGAAGTTTGTGAAGTTTA+AGG | - | chr6_2:273159-273178 | None:intergenic | 30.0% | |
| !! | AAAAGTTGATTTGAGACCAT+TGG | - | chr6_2:273200-273219 | None:intergenic | 30.0% |
| AAAATCCTAAGAACACAACA+AGG | + | chr6_2:273263-273282 | Msa0903170:CDS | 30.0% | |
| ! | TATAACCTTGTTGTGTTCTT+AGG | - | chr6_2:273271-273290 | None:intergenic | 30.0% |
| ! | TGTACTTTCAATTGTTGCTT+TGG | + | chr6_2:273312-273331 | Msa0903170:CDS | 30.0% |
| AAAAGATTCTTAACTTCCCA+AGG | - | chr6_2:273388-273407 | None:intergenic | 30.0% | |
| !!! | TGCAATGGTTTTATATGGTT+TGG | + | chr6_2:273407-273426 | Msa0903170:CDS | 30.0% |
| TTTGACACAAACAAAACCAA+AGG | - | chr6_2:273460-273479 | None:intergenic | 30.0% | |
| TCTTGATTCAATCTTTGGAT+CGG | + | chr6_2:273497-273516 | Msa0903170:CDS | 30.0% | |
| GCTAGAATTTACTTACATAC+CGG | - | chr6_2:273869-273888 | None:intergenic | 30.0% | |
| TTCTATCTTCACTGGTAATT+TGG | + | chr6_2:273935-273954 | Msa0903170:intron | 30.0% | |
| GCAATTAAAAAGTCTGATCA+AGG | + | chr6_2:273982-274001 | Msa0903170:intron | 30.0% | |
| ! | TCCATTATACACATTAGCTT+CGG | - | chr6_2:274054-274073 | None:intergenic | 30.0% |
| CCATGAATATTGAATCAATC+AGG | - | chr6_2:274231-274250 | None:intergenic | 30.0% | |
| ! | CCTGATTGATTCAATATTCA+TGG | + | chr6_2:274228-274247 | Msa0903170:intron | 30.0% |
| ! | GATTGATTCAATATTCATGG+AGG | + | chr6_2:274231-274250 | Msa0903170:intron | 30.0% |
| ! | TGAACTAGTATTCTGTCTTT+TGG | - | chr6_2:274384-274403 | None:intergenic | 30.0% |
| CAGAATACTAGTTCAAGTAT+TGG | + | chr6_2:274389-274408 | Msa0903170:CDS | 30.0% | |
| ATAATGCTTACCTTGAAATG+TGG | - | chr6_2:274639-274658 | None:intergenic | 30.0% | |
| ! | ATTGTCCTTATTTGGCTTAT+GGG | - | chr6_2:274862-274881 | None:intergenic | 30.0% |
| TGAAAACTGTAAATGTGGTT+AGG | - | chr6_2:274908-274927 | None:intergenic | 30.0% | |
| ! | AACATTGTTTTCGGTATTTC+TGG | - | chr6_2:274997-275016 | None:intergenic | 30.0% |
| ATGTATTACATACAACAGTG+AGG | - | chr6_2:275074-275093 | None:intergenic | 30.0% | |
| ! | ACATATTTTATCTGTGAGGA+TGG | + | chr6_2:275090-275109 | Msa0903170:intron | 30.0% |
| AAGATGAGAATCTTCTAACA+AGG | + | chr6_2:275218-275237 | Msa0903170:CDS | 30.0% | |
| !! | GGCTATTTCTTGAATTTCTT+CGG | + | chr6_2:275292-275311 | Msa0903170:CDS | 30.0% |
| TTGAATTTCTTCGGATTCAA+TGG | + | chr6_2:275301-275320 | Msa0903170:CDS | 30.0% | |
| TTTGTAAGCTTCATAGGATT+CGG | - | chr6_2:275479-275498 | None:intergenic | 30.0% | |
| ACAAAAAACAACAACATCGT+TGG | + | chr6_2:275494-275513 | Msa0903170:CDS | 30.0% | |
| !!! | TGTAACATGGTTTTAGATTG+CGG | + | chr6_2:275610-275629 | Msa0903170:intron | 30.0% |
| TGATTTATTAGCATAAGCAC+TGG | + | chr6_2:275689-275708 | Msa0903170:intron | 30.0% | |
| TATTGGTATAAGAACTTGTG+AGG | - | chr6_2:276029-276048 | None:intergenic | 30.0% | |
| TTGCAAAAATTTGGGGATAA+TGG | - | chr6_2:276229-276248 | None:intergenic | 30.0% | |
| ! | TTTTTGTGCAGATATCAGTA+TGG | + | chr6_2:276306-276325 | Msa0903170:intron | 30.0% |
| AATAGAGTGAATGAGTAGAA+GGG | - | chr6_2:276383-276402 | None:intergenic | 30.0% | |
| TCAGGTATGAACATTGTTAA+GGG | - | chr6_2:276419-276438 | None:intergenic | 30.0% | |
| TTCAGGTATGAACATTGTTA+AGG | - | chr6_2:276420-276439 | None:intergenic | 30.0% | |
| TGTTCTCGAAAAGAAGATAA+GGG | - | chr6_2:276535-276554 | None:intergenic | 30.0% | |
| ! | NNNNNGGGTTTGGAGTTATT+AGG | + | chr6_2:276831-276850 | Msa0903170:intron | 30.0% |
| CAAAATTCAGAAAACAGAAG+TGG | + | chr6_2:276854-276873 | Msa0903170:intron | 30.0% | |
| !!! | TTTCTTGCTTTTTCAAGGTT+TGG | + | chr6_2:276986-277005 | Msa0903170:intron | 30.0% |
| AACAAGTTAGCTGAAAAACA+AGG | + | chr6_2:277042-277061 | Msa0903170:intron | 30.0% | |
| AAACACAAATTGTGTGAAGT+AGG | - | chr6_2:277467-277486 | None:intergenic | 30.0% | |
| ACAAGAAAGTCTCTTTAATG+TGG | + | chr6_2:277514-277533 | Msa0903170:intron | 30.0% | |
| CAAGAAAGTCTCTTTAATGT+GGG | + | chr6_2:277515-277534 | Msa0903170:intron | 30.0% | |
| CTAACTAATGAGGATAGATT+AGG | - | chr6_2:277638-277657 | None:intergenic | 30.0% | |
| !! | AAGATGTTTTTGATATGCCA+CGG | - | chr6_2:277790-277809 | None:intergenic | 30.0% |
| TGACCAAACTCTATATCAAA+TGG | - | chr6_2:277877-277896 | None:intergenic | 30.0% | |
| AAATTTGACAGGCTAAAGCA+AGG | - | chr6_2:272672-272691 | None:intergenic | 35.0% | |
| GTTGCATTTGTAACTGTGTT+TGG | - | chr6_2:273019-273038 | None:intergenic | 35.0% | |
| AACTTCTGACATGTTTGACA+TGG | + | chr6_2:273170-273189 | Msa0903170:CDS | 35.0% | |
| ATTTGCATGTGATTCAACCT+TGG | + | chr6_2:273368-273387 | Msa0903170:CDS | 35.0% | |
| TTTGCATGTGATTCAACCTT+GGG | + | chr6_2:273369-273388 | Msa0903170:CDS | 35.0% | |
| AGAAGATTATGTTGCTCCTT+TGG | + | chr6_2:273441-273460 | Msa0903170:CDS | 35.0% | |
| ! | TTCTTTGTCTTGGATGCTTT+TGG | + | chr6_2:273524-273543 | Msa0903170:CDS | 35.0% |
| TAAGCATCATCATCAATCCT+AGG | - | chr6_2:273571-273590 | None:intergenic | 35.0% | |
| ! | TGATGATGCTTATGATGTTG+AGG | + | chr6_2:273579-273598 | Msa0903170:CDS | 35.0% |
| TCCAATGTGTAATGAAAGAG+AGG | + | chr6_2:273636-273655 | Msa0903170:CDS | 35.0% | |
| ACCTCTCTTTCATTACACAT+TGG | - | chr6_2:273640-273659 | None:intergenic | 35.0% | |
| TATTAGCAAGAGTTCGAACT+CGG | + | chr6_2:273898-273917 | Msa0903170:intron | 35.0% | |
| CAGTGAAGATAGAATCGATT+GGG | - | chr6_2:273929-273948 | None:intergenic | 35.0% | |
| ! | CTGGTAATTTGGAATTTGAC+CGG | + | chr6_2:273946-273965 | Msa0903170:intron | 35.0% |
| ! | CCATTATACACATTAGCTTC+GGG | - | chr6_2:274053-274072 | None:intergenic | 35.0% |
| CAGAGGGTTAAGACAAAAAA+TGG | - | chr6_2:274130-274149 | None:intergenic | 35.0% | |
| ACAGATGCTTATCAAAGATG+AGG | + | chr6_2:274434-274453 | Msa0903170:CDS | 35.0% | |
| TCAAAGATGAGGTTTCTTCT+TGG | + | chr6_2:274445-274464 | Msa0903170:CDS | 35.0% | |
| GTTTCTTCTTGGAAAGAGAA+AGG | + | chr6_2:274456-274475 | Msa0903170:CDS | 35.0% | |
| AGACATAGATTGATCAGAAC+TGG | + | chr6_2:274495-274514 | Msa0903170:CDS | 35.0% | |
| ATCAGAACTGGTTATAAAGC+AGG | + | chr6_2:274507-274526 | Msa0903170:CDS | 35.0% | |
| TCAGAACTGGTTATAAAGCA+GGG | + | chr6_2:274508-274527 | Msa0903170:CDS | 35.0% | |
| !!! | CAATGCAAACATGCTACTTT+TGG | + | chr6_2:274790-274809 | Msa0903170:intron | 35.0% |
| ! | CATTGTCCTTATTTGGCTTA+TGG | - | chr6_2:274863-274882 | None:intergenic | 35.0% |
| AATGTGGTTAGGAAGTAAAC+AGG | - | chr6_2:274897-274916 | None:intergenic | 35.0% | |
| GACACTGAAAACTGTAAATG+TGG | - | chr6_2:274913-274932 | None:intergenic | 35.0% | |
| ATGTGATGAATGACAGAAGA+CGG | + | chr6_2:274947-274966 | Msa0903170:intron | 35.0% | |
| TTATCTGTGAGGATGGAATA+AGG | + | chr6_2:275097-275116 | Msa0903170:intron | 35.0% | |
| CAAAGTCACGAAAATCGTTA+GGG | - | chr6_2:275142-275161 | None:intergenic | 35.0% | |
| ACAAAGTCACGAAAATCGTT+AGG | - | chr6_2:275143-275162 | None:intergenic | 35.0% | |
| TTTATAGGGAAAACCTGACT+TGG | + | chr6_2:275162-275181 | Msa0903170:intron | 35.0% | |
| TTATAGGGAAAACCTGACTT+GGG | + | chr6_2:275163-275182 | Msa0903170:intron | 35.0% | |
| ! | CAACTTGTGTTTTCACTTTG+AGG | + | chr6_2:275252-275271 | Msa0903170:CDS | 35.0% |
| TTAGAGCTCATTTGAATGGA+TGG | + | chr6_2:275410-275429 | Msa0903170:CDS | 35.0% | |
| TTGTAAGCTTCATAGGATTC+GGG | - | chr6_2:275478-275497 | None:intergenic | 35.0% | |
| CATAGCCTAAAAAGTTGCAT+AGG | - | chr6_2:275529-275548 | None:intergenic | 35.0% | |
| ! | TGCTGCAACATAAGGTTTTA+GGG | + | chr6_2:275641-275660 | Msa0903170:intron | 35.0% |
| ! | GTTTGACTTTAGGCTCTATT+TGG | + | chr6_2:275837-275856 | Msa0903170:intron | 35.0% |
| TTTATAAGCTCTCCACCATA+TGG | - | chr6_2:275887-275906 | None:intergenic | 35.0% | |
| TTTATCCAAACAAGTCCTAG+AGG | + | chr6_2:276163-276182 | Msa0903170:intron | 35.0% | |
| ! | CAAAAATTTGGGGATAATGG+TGG | - | chr6_2:276226-276245 | None:intergenic | 35.0% |
| GAATAGAGTGAATGAGTAGA+AGG | - | chr6_2:276384-276403 | None:intergenic | 35.0% | |
| ACATAACAGATTACCCAAAG+GGG | - | chr6_2:276452-276471 | None:intergenic | 35.0% | |
| GACATAACAGATTACCCAAA+GGG | - | chr6_2:276453-276472 | None:intergenic | 35.0% | |
| TTAAGAACGACATGACGATA+GGG | - | chr6_2:276475-276494 | None:intergenic | 35.0% | |
| TTTAAGAACGACATGACGAT+AGG | - | chr6_2:276476-276495 | None:intergenic | 35.0% | |
| GTGTTCTCGAAAAGAAGATA+AGG | - | chr6_2:276536-276555 | None:intergenic | 35.0% | |
| !! | TCTTTTCGAGAACACAATGT+CGG | + | chr6_2:276541-276560 | Msa0903170:CDS | 35.0% |
| GGTTACAAAGTTCAATGCAA+TGG | + | chr6_2:276562-276581 | Msa0903170:CDS | 35.0% | |
| AAGTTCAATGCAATGGTTTC+TGG | + | chr6_2:276569-276588 | Msa0903170:CDS | 35.0% | |
| ! | GTTTCTGGACTATTTCAACT+AGG | + | chr6_2:276584-276603 | Msa0903170:CDS | 35.0% |
| !! | AACTAGGAAGTGCTTATGAA+TGG | + | chr6_2:276600-276619 | Msa0903170:CDS | 35.0% |
| !! | ACTAGGAAGTGCTTATGAAT+GGG | + | chr6_2:276601-276620 | Msa0903170:CDS | 35.0% |
| GTTGAAAGAACTATATCAGC+TGG | + | chr6_2:277128-277147 | Msa0903170:intron | 35.0% | |
| AATGAGCAACATTTCCTTTC+TGG | + | chr6_2:277400-277419 | Msa0903170:intron | 35.0% | |
| CAAAACAGAAACAACCAGAA+AGG | - | chr6_2:277417-277436 | None:intergenic | 35.0% | |
| ! | TTAATGTGGGAGAAAGTGTA+TGG | + | chr6_2:277528-277547 | Msa0903170:intron | 35.0% |
| TGTATGTAAAAACCAAACCG+TGG | + | chr6_2:277770-277789 | Msa0903170:intron | 35.0% | |
| TTGATATAGAGTTTGGTCAC+TGG | + | chr6_2:277878-277897 | Msa0903170:intron | 35.0% | |
| !! | CGTATGGAGAAGTATTTGTT+GGG | + | chr6_2:277907-277926 | Msa0903170:CDS | 35.0% |
| TGTTTGACATGGTTGACCAA+TGG | + | chr6_2:273181-273200 | Msa0903170:CDS | 40.0% | |
| ! | TCTTGGATGCTTTTGGATCA+AGG | + | chr6_2:273531-273550 | Msa0903170:CDS | 40.0% |
| AGGTTAAGAAGTTGAAGCCT+AGG | + | chr6_2:273551-273570 | Msa0903170:CDS | 40.0% | |
| AGAACCATAGGAAAGCTCAA+AGG | - | chr6_2:273607-273626 | None:intergenic | 40.0% | |
| GGAATCTGAACAAGAACCAT+AGG | - | chr6_2:273619-273638 | None:intergenic | 40.0% | |
| CCAGTGAAGATAGAATCGAT+TGG | - | chr6_2:273930-273949 | None:intergenic | 40.0% | |
| ! | CCAATCGATTCTATCTTCAC+TGG | + | chr6_2:273927-273946 | Msa0903170:intron | 40.0% |
| ! | GTAATTTGGAATTTGACCGG+TGG | + | chr6_2:273949-273968 | Msa0903170:intron | 40.0% |
| CCCGAAGCTAATGTGTATAA+TGG | + | chr6_2:274050-274069 | Msa0903170:intron | 40.0% | |
| TCTTAACCCTCTGATTCTCA+AGG | + | chr6_2:274137-274156 | Msa0903170:intron | 40.0% | |
| CTTAACCCTCTGATTCTCAA+GGG | + | chr6_2:274138-274157 | Msa0903170:intron | 40.0% | |
| CATTTCCCTTGAGAATCAGA+GGG | - | chr6_2:274146-274165 | None:intergenic | 40.0% | |
| ACATTTCCCTTGAGAATCAG+AGG | - | chr6_2:274147-274166 | None:intergenic | 40.0% | |
| TGACCAATGATTGTCCAACT+AGG | + | chr6_2:274188-274207 | Msa0903170:intron | 40.0% | |
| GACCAATGATTGTCCAACTA+GGG | + | chr6_2:274189-274208 | Msa0903170:intron | 40.0% | |
| AACCCTAGTTGGACAATCAT+TGG | - | chr6_2:274194-274213 | None:intergenic | 40.0% | |
| ATCGTAATTCGAACCCTAGT+TGG | - | chr6_2:274205-274224 | None:intergenic | 40.0% | |
| ATGGAGGCTTATTAGCCATT+TGG | + | chr6_2:274247-274266 | Msa0903170:intron | 40.0% | |
| TGGAGGCTTATTAGCCATTT+GGG | + | chr6_2:274248-274267 | Msa0903170:intron | 40.0% | |
| AACAAGTGTTTGAGCCCAAA+TGG | - | chr6_2:274265-274284 | None:intergenic | 40.0% | |
| GTCAGCATCAGATGTAACAT+TGG | - | chr6_2:274291-274310 | None:intergenic | 40.0% | |
| TGCATGAGGTAATCAGGATT+TGG | - | chr6_2:274609-274628 | None:intergenic | 40.0% | |
| ! | ATGGTTTGCATGAGGTAATC+AGG | - | chr6_2:274615-274634 | None:intergenic | 40.0% |
| ! | AATGTGGAATGGTTTGCATG+AGG | - | chr6_2:274623-274642 | None:intergenic | 40.0% |
| GCAAACCATTCCACATTTCA+AGG | + | chr6_2:274626-274645 | Msa0903170:CDS | 40.0% | |
| GCTTACCTTGAAATGTGGAA+TGG | - | chr6_2:274634-274653 | None:intergenic | 40.0% | |
| CAAGACCCATAAGCCAAATA+AGG | + | chr6_2:274854-274873 | Msa0903170:intron | 40.0% | |
| GAGGTTGAACAACAAGTGAA+TGG | + | chr6_2:275271-275290 | Msa0903170:CDS | 40.0% | |
| TGTTTGGAGGATTAAGGCTT+TGG | + | chr6_2:275333-275352 | Msa0903170:CDS | 40.0% | |
| !! | ATTAAGGCTTTGGAGGAATC+AGG | + | chr6_2:275343-275362 | Msa0903170:CDS | 40.0% |
| GCTGTTAGAGCTCATTTGAA+TGG | + | chr6_2:275406-275425 | Msa0903170:CDS | 40.0% | |
| ! | CTGGTCCTATGCAACTTTTT+AGG | + | chr6_2:275521-275540 | Msa0903170:CDS | 40.0% |
| ! | CTGCTGCAACATAAGGTTTT+AGG | + | chr6_2:275640-275659 | Msa0903170:intron | 40.0% |
| TTTACCAAGCCCTTACCATA+TGG | + | chr6_2:275869-275888 | Msa0903170:intron | 40.0% | |
| GCTGAAAACAGTTTGTGATC+AGG | + | chr6_2:275970-275989 | Msa0903170:intron | 40.0% | |
| CCTTATCTGAGCTTGTCTAT+TGG | - | chr6_2:276046-276065 | None:intergenic | 40.0% | |
| CCAATAGACAAGCTCAGATA+AGG | + | chr6_2:276043-276062 | Msa0903170:intron | 40.0% | |
| GCAGATATCAGTATGGAAGA+AGG | + | chr6_2:276313-276332 | Msa0903170:intron | 40.0% | |
| TGAATCAGAACTACCCCTTT+GGG | + | chr6_2:276436-276455 | Msa0903170:CDS | 40.0% | |
| GGACATAACAGATTACCCAA+AGG | - | chr6_2:276454-276473 | None:intergenic | 40.0% | |
| !! | AAAGGGACTGATTTTGGTGA+TGG | - | chr6_2:276506-276525 | None:intergenic | 40.0% |
| !! | ACAAGGAAAGGGACTGATTT+TGG | - | chr6_2:276512-276531 | None:intergenic | 40.0% |
| GAAGATAAGGGACAAGGAAA+GGG | - | chr6_2:276523-276542 | None:intergenic | 40.0% | |
| AGAAGATAAGGGACAAGGAA+AGG | - | chr6_2:276524-276543 | None:intergenic | 40.0% | |
| CGAAAAGAAGATAAGGGACA+AGG | - | chr6_2:276529-276548 | None:intergenic | 40.0% | |
| TGGGTTGTGACAAAGAAAAC+AGG | + | chr6_2:276620-276639 | Msa0903170:CDS | 40.0% | |
| TCTGAGTGTCTTCTATGCAA+TGG | - | chr6_2:276713-276732 | None:intergenic | 40.0% | |
| ! | AGAAGTCTTTTAGCAGCACA+TGG | + | chr6_2:276951-276970 | Msa0903170:intron | 40.0% |
| AGGTTTGGCATTCCTTGTTA+TGG | + | chr6_2:277001-277020 | Msa0903170:intron | 40.0% | |
| ! | GGTTTGGCATTCCTTGTTAT+GGG | + | chr6_2:277002-277021 | Msa0903170:intron | 40.0% |
| TCAAGTCCAAACCCATAACA+AGG | - | chr6_2:277016-277035 | None:intergenic | 40.0% | |
| GTTATGGGTTTGGACTTGAT+TGG | + | chr6_2:277017-277036 | Msa0903170:intron | 40.0% | |
| !! | TGTGCTAGAGTATCGAACTT+AGG | + | chr6_2:277587-277606 | Msa0903170:intron | 40.0% |
| GTATCGAACTTAGGTCACTA+AGG | + | chr6_2:277596-277615 | Msa0903170:intron | 40.0% | |
| AGGTCACTAAGGTTGAAGAA+CGG | + | chr6_2:277607-277626 | Msa0903170:intron | 40.0% | |
| ACTTAAGTCAGCATTGTCGA+TGG | + | chr6_2:277681-277700 | Msa0903170:intron | 40.0% | |
| ! | GTTTTTGATATGCCACGGTT+TGG | - | chr6_2:277785-277804 | None:intergenic | 40.0% |
| AAATACTTCTCCATACGCAC+CGG | - | chr6_2:277904-277923 | None:intergenic | 40.0% | |
| !! | GCGTATGGAGAAGTATTTGT+TGG | + | chr6_2:277906-277925 | Msa0903170:CDS | 40.0% |
| !! | TCAAGAGATTAGTCTCTGCA+TGG | + | chr6_2:277963-277982 | Msa0903170:CDS | 40.0% |
| AGAGAGGGCTCAAATTTGAC+AGG | - | chr6_2:272683-272702 | None:intergenic | 45.0% | |
| !! | GATCGGCTTGTTCTTTGTCT+TGG | + | chr6_2:273514-273533 | Msa0903170:CDS | 45.0% |
| GGATCCTTTGAGCTTTCCTA+TGG | + | chr6_2:273600-273619 | Msa0903170:CDS | 45.0% | |
| CTCGGAATCAGAGAGTTAGA+GGG | - | chr6_2:273807-273826 | None:intergenic | 45.0% | |
| TCTCGGAATCAGAGAGTTAG+AGG | - | chr6_2:273808-273827 | None:intergenic | 45.0% | |
| ! | CTGGTAATCTGGAGTTAGAC+CGG | + | chr6_2:273847-273866 | Msa0903170:intron | 45.0% |
| AATTGCCAGTCAAACTCCAC+CGG | - | chr6_2:273968-273987 | None:intergenic | 45.0% | |
| TTCCAACCAAACTGTGAGCT+AGG | + | chr6_2:274009-274028 | Msa0903170:intron | 45.0% | |
| TCCAACCAAACTGTGAGCTA+GGG | + | chr6_2:274010-274029 | Msa0903170:intron | 45.0% | |
| GATTACCCTAGCTCACAGTT+TGG | - | chr6_2:274018-274037 | None:intergenic | 45.0% | |
| !! | GTGCTGCTTGTCAACTTGAT+TGG | + | chr6_2:274358-274377 | Msa0903170:CDS | 45.0% |
| GCAATGGTTAGCATTCTCCT+TGG | - | chr6_2:274669-274688 | None:intergenic | 45.0% | |
| AGAATGCTAACCATTGCCCT+TGG | + | chr6_2:274672-274691 | Msa0903170:intron | 45.0% | |
| GAATGCTAACCATTGCCCTT+GGG | + | chr6_2:274673-274692 | Msa0903170:intron | 45.0% | |
| AATGCTAACCATTGCCCTTG+GGG | + | chr6_2:274674-274693 | Msa0903170:intron | 45.0% | |
| TTCCTTAACCATTGCCCTCA+GGG | + | chr6_2:274814-274833 | Msa0903170:intron | 45.0% | |
| !! | TGGGACTAGTTCAAGCAAGA+TGG | + | chr6_2:275182-275201 | Msa0903170:CDS | 45.0% |
| TTCGGATTCAATGGAACAGC+TGG | + | chr6_2:275310-275329 | Msa0903170:CDS | 45.0% | |
| TCAATGGAACAGCTGGTGTT+TGG | + | chr6_2:275317-275336 | Msa0903170:CDS | 45.0% | |
| AGCTGGTGTTTGGAGGATTA+AGG | + | chr6_2:275327-275346 | Msa0903170:CDS | 45.0% | |
| ! | TTGGAGGATTAAGGCTTTGG+AGG | + | chr6_2:275336-275355 | Msa0903170:CDS | 45.0% |
| GTTGGAAAGGACAACAGTTG+AGG | + | chr6_2:275372-275391 | Msa0903170:CDS | 45.0% | |
| AAGGACAACAGTTGAGGACA+TGG | + | chr6_2:275378-275397 | Msa0903170:CDS | 45.0% | |
| CAACAACATCGTTGGCATTC+TGG | + | chr6_2:275502-275521 | Msa0903170:CDS | 45.0% | |
| TCCTGCTGTATTAACTGCCA+AGG | + | chr6_2:275552-275571 | Msa0903170:CDS | 45.0% | |
| ACCTTGGCAGTTAATACAGC+AGG | - | chr6_2:275556-275575 | None:intergenic | 45.0% | |
| TCAGATGCTGCTGCAACATA+AGG | + | chr6_2:275633-275652 | Msa0903170:intron | 45.0% | |
| AGCTCTCCACCATATGGTAA+GGG | - | chr6_2:275881-275900 | None:intergenic | 45.0% | |
| AAGCTCTCCACCATATGGTA+AGG | - | chr6_2:275882-275901 | None:intergenic | 45.0% | |
| !! | AGAGACCTCTAGGACTTGTT+TGG | - | chr6_2:276171-276190 | None:intergenic | 45.0% |
| TTGCAATAGCAGAGACCTCT+AGG | - | chr6_2:276181-276200 | None:intergenic | 45.0% | |
| !! | CAAAGGGGTAGTTCTGATTC+AGG | - | chr6_2:276437-276456 | None:intergenic | 45.0% |
| CTGAATCAGAACTACCCCTT+TGG | + | chr6_2:276435-276454 | Msa0903170:CDS | 45.0% | |
| !!! | GGACTGATTTTGGTGATGGA+AGG | - | chr6_2:276502-276521 | None:intergenic | 45.0% |
| ! | GGCATTCCTTGTTATGGGTT+TGG | + | chr6_2:277007-277026 | Msa0903170:intron | 45.0% |
| TTCGATACTCTAGCACACCA+AGG | - | chr6_2:277584-277603 | None:intergenic | 45.0% | |
| CCATTTGTGTCGCACTATGT+TGG | - | chr6_2:277835-277854 | None:intergenic | 45.0% | |
| CCAACATAGTGCGACACAAA+TGG | + | chr6_2:277832-277851 | Msa0903170:intron | 45.0% | |
| CGACACAAATGGCAGATACT+CGG | + | chr6_2:277843-277862 | Msa0903170:intron | 45.0% | |
| GACACAAATGGCAGATACTC+GGG | + | chr6_2:277844-277863 | Msa0903170:intron | 45.0% | |
| TATAGAGTTTGGTCACTGGC+CGG | + | chr6_2:277882-277901 | Msa0903170:intron | 45.0% | |
| !! | TCGAGAGATTAGTCTCTGCA+TGG | + | chr6_2:278035-278054 | Msa0903170:CDS | 45.0% |
| !! | TAAAAATAGAAATATAATAT+TGG | + | chr6_2:274712-274731 | Msa0903170:intron | 5.0% |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr6_2:272698-272717 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr6_2:272697-272716 | None:intergenic | 50.0% | |
| TGATTCCGAGAGCGAGCAAA+GGG | + | chr6_2:273817-273836 | Msa0903170:intron | 50.0% | |
| TTTGACCGGTGGAGTTTGAC+TGG | + | chr6_2:273960-273979 | Msa0903170:intron | 50.0% | |
| ACCCTAGCTCACAGTTTGGT+TGG | - | chr6_2:274014-274033 | None:intergenic | 50.0% | |
| CTTCCTTAACCATTGCCCTC+AGG | + | chr6_2:274813-274832 | Msa0903170:intron | 50.0% | |
| GCTTGAACTAGTCCCAAGTC+AGG | - | chr6_2:275178-275197 | None:intergenic | 50.0% | |
| ATGGAACAGCTGGTGTTTGG+AGG | + | chr6_2:275320-275339 | Msa0903170:CDS | 50.0% | |
| !! | AAGGCTTTGGAGGAATCAGG+CGG | + | chr6_2:275346-275365 | Msa0903170:CDS | 50.0% |
| ! | AATCAGGCGGTTGGTTGGAA+AGG | + | chr6_2:275359-275378 | Msa0903170:CDS | 50.0% |
| ACCAAGCCCTTACCATATGG+TGG | + | chr6_2:275872-275891 | Msa0903170:intron | 50.0% | |
| TCCACCATATGGTAAGGGCT+TGG | - | chr6_2:275876-275895 | None:intergenic | 50.0% | |
| ! | AGGCTGTTTCAGAGAGCTTG+TGG | - | chr6_2:276009-276028 | None:intergenic | 50.0% |
| CTGATTCCGAGAGCGAGCAA+AGG | + | chr6_2:273816-273835 | Msa0903170:intron | 55.0% | |
| GATTCCGAGAGCGAGCAAAG+GGG | + | chr6_2:273818-273837 | Msa0903170:intron | 55.0% | |
| AACCATTGCCCTTGGGGCAT+TGG | + | chr6_2:274680-274699 | Msa0903170:intron | 55.0% | |
| ATCCAATGCCCCAAGGGCAA+TGG | - | chr6_2:274685-274704 | None:intergenic | 55.0% | |
| !! | TGCCCTTGGGGCATTGGATA+AGG | + | chr6_2:274686-274705 | Msa0903170:intron | 55.0% |
| !! | GCCCTTGGGGCATTGGATAA+GGG | + | chr6_2:274687-274706 | Msa0903170:intron | 55.0% |
| CCCCTTATCCAATGCCCCAA+GGG | - | chr6_2:274691-274710 | None:intergenic | 55.0% | |
| !! | CCCTTGGGGCATTGGATAAG+GGG | + | chr6_2:274688-274707 | Msa0903170:intron | 55.0% |
| TCCCCTTATCCAATGCCCCA+AGG | - | chr6_2:274692-274711 | None:intergenic | 55.0% | |
| AGCCCTGAGGGCAATGGTTA+AGG | - | chr6_2:274819-274838 | None:intergenic | 55.0% | |
| ! | CTTTGGAGGAATCAGGCGGT+TGG | + | chr6_2:275350-275369 | Msa0903170:CDS | 55.0% |
| ! | AGGGGCTCGCACTGGTAATC+TGG | + | chr6_2:273836-273855 | Msa0903170:intron | 60.0% |
| AACCATTGCCCTCAGGGCTC+AGG | + | chr6_2:274820-274839 | Msa0903170:intron | 60.0% | |
| ACCATTGCCCTCAGGGCTCA+GGG | + | chr6_2:274821-274840 | Msa0903170:intron | 60.0% | |
| ACCATTGCCCTGAGCCCTGA+GGG | - | chr6_2:274831-274850 | None:intergenic | 60.0% | |
| AACCATTGCCCTGAGCCCTG+AGG | - | chr6_2:274832-274851 | None:intergenic | 60.0% | |
| GGAGGAATCAGGCGGTTGGT+TGG | + | chr6_2:275354-275373 | Msa0903170:CDS | 60.0% | |
| CGAGCCCCTTTGCTCGCTCT+CGG | - | chr6_2:273825-273844 | None:intergenic | 65.0% | |
| TGGTCACTGGCCGGTGCGTA+TGG | + | chr6_2:277891-277910 | Msa0903170:CDS | 65.0% | |
| GCGAGCAAAGGGGCTCGCAC+TGG | + | chr6_2:273828-273847 | Msa0903170:intron | 70.0% | |
| GCCCTGAGCCCTGAGGGCAA+TGG | - | chr6_2:274825-274844 | None:intergenic | 70.0% | |
| GCCCTCAGGGCTCAGGGCAA+TGG | + | chr6_2:274827-274846 | Msa0903170:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 272626 | 278104 | 272626 | ID=Msa0903170;Name=Msa0903170 |
| chr6_2 | mRNA | 272626 | 278104 | 272626 | ID=Msa0903170-mRNA-1;Parent=Msa0903170;Name=Msa0903170-mRNA-1;_AED=0.18;_eAED=0.18;_QI=384|0.75|0.6|0.8|1|1|5|0|634 |
| chr6_2 | exon | 272626 | 273657 | 272626 | ID=Msa0903170-mRNA-1:exon:82;Parent=Msa0903170-mRNA-1 |
| chr6_2 | exon | 274339 | 274647 | 274339 | ID=Msa0903170-mRNA-1:exon:83;Parent=Msa0903170-mRNA-1 |
| chr6_2 | exon | 275169 | 275573 | 275169 | ID=Msa0903170-mRNA-1:exon:84;Parent=Msa0903170-mRNA-1 |
| chr6_2 | exon | 276317 | 276641 | 276317 | ID=Msa0903170-mRNA-1:exon:85;Parent=Msa0903170-mRNA-1 |
| chr6_2 | exon | 277887 | 278104 | 277887 | ID=Msa0903170-mRNA-1:exon:86;Parent=Msa0903170-mRNA-1 |
| chr6_2 | five_prime_UTR | 272626 | 273009 | 272626 | ID=Msa0903170-mRNA-1:five_prime_utr;Parent=Msa0903170-mRNA-1 |
| chr6_2 | CDS | 273010 | 273657 | 273010 | ID=Msa0903170-mRNA-1:cds;Parent=Msa0903170-mRNA-1 |
| chr6_2 | CDS | 274339 | 274647 | 274339 | ID=Msa0903170-mRNA-1:cds;Parent=Msa0903170-mRNA-1 |
| chr6_2 | CDS | 275169 | 275573 | 275169 | ID=Msa0903170-mRNA-1:cds;Parent=Msa0903170-mRNA-1 |
| chr6_2 | CDS | 276317 | 276641 | 276317 | ID=Msa0903170-mRNA-1:cds;Parent=Msa0903170-mRNA-1 |
| chr6_2 | CDS | 277887 | 278104 | 277887 | ID=Msa0903170-mRNA-1:cds;Parent=Msa0903170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
