AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0213360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0213360 MtrunA17_Chr8g0388971 85.965 57 8 0 5 61 177 233 1.73e-25 96.3
Msa0213360 MtrunA17_Chr4g0049371 92.593 27 2 0 59 85 186 212 1.48e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 139 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAATTTACAGGTTGTATT+TGG 0.074952 2_1:-56198686 Msa0213360:intron
ACCCTGTGACAGTATAAATT+TGG 0.118549 2_1:-56202094 Msa0213360:intron
TGATCTGATATTGCCATTAT+TGG 0.160604 2_1:-56199788 Msa0213360:CDS
TCGATAAAGCGGACTATATT+TGG 0.163042 2_1:+56203250 None:intergenic
GACTACATGCGTCTGTTTAT+TGG 0.216412 2_1:-56198591 Msa0213360:three_prime_UTR
GTTGGTATCTTGAGATGTTT+AGG 0.238781 2_1:-56198100 Msa0213360:three_prime_UTR
TTATTTAGTGCGGAACATTT+TGG 0.261739 2_1:-56197997 Msa0213360:three_prime_UTR
TAGTTTATAGCTGACCTTAA+TGG 0.271013 2_1:-56202926 Msa0213360:five_prime_UTR
CTGGCTTTATATAGTGTAAA+AGG 0.271777 2_1:+56204797 None:intergenic
CCCTGTGACAGTATAAATTT+GGG 0.275122 2_1:-56202093 Msa0213360:intron
AAAATGTTCCGCACTAAATA+AGG 0.275601 2_1:+56197999 None:intergenic
TCATTATTCACACATGTATA+TGG 0.275920 2_1:-56203538 Msa0213360:intron
GGTCTAATTATTCAAGTATA+TGG 0.279025 2_1:-56198078 Msa0213360:three_prime_UTR
ACTATCATGGTTCCTTGATT+TGG 0.280086 2_1:+56202945 None:intergenic
GGGAGAGAAAGCTGAGAAAT+AGG 0.302207 2_1:+56204746 None:intergenic
GTCTAATTCGACCGCAATTT+AGG 0.304086 2_1:+56202690 None:intergenic
TACAGGTTGTATTTGGGAAA+TGG 0.310094 2_1:-56198679 Msa0213360:intron
ATAGTAGTATATTTCAAATA+TGG 0.315953 2_1:+56203084 None:intergenic
TTGGTATCTTGAGATGTTTA+GGG 0.319683 2_1:-56198099 Msa0213360:three_prime_UTR
TGACATTACCTCTGGTAAAT+AGG 0.321106 2_1:+56199735 None:intergenic
TATAACTTCCCTATAGAATC+AGG 0.340483 2_1:+56202511 None:intergenic
CAATAATATAAATAACAAAA+TGG 0.344049 2_1:+56202455 None:intergenic
AATTGGCCAATATTGTTTCA+TGG 0.344719 2_1:+56202789 None:intergenic
GGATCAGCTAAATTCTTTAC+TGG 0.347931 2_1:-56202071 Msa0213360:five_prime_UTR
ACAGGTTGTATTTGGGAAAT+GGG 0.352688 2_1:-56198678 Msa0213360:intron
CAAGCTACAGGTGTGGCTTC+AGG 0.358651 2_1:-56200420 Msa0213360:five_prime_UTR
GATTGGCTCCCTGATTCTAT+AGG 0.360597 2_1:-56202520 Msa0213360:five_prime_UTR
CAACACCTCCTGTAGGTTCT+TGG 0.361948 2_1:+56203398 None:intergenic
AATGGTAACGTCTCCAATAA+TGG 0.365364 2_1:+56199775 None:intergenic
GTAATCTCCCATTTGTTCAT+TGG 0.369961 2_1:+56202845 None:intergenic
TTAATTTACAGGTTGTATTT+GGG 0.371554 2_1:-56198685 Msa0213360:intron
TTGTTTCATGGTTCTACGTT+TGG 0.372084 2_1:+56202801 None:intergenic
TGTGTCTCGGAAGTTGGAAT+TGG 0.376856 2_1:-56198217 Msa0213360:three_prime_UTR
TTTGAAGCCTAAACCTTGTA+TGG 0.377135 2_1:+56200386 None:intergenic
GAGTCTCTCAATCTTATAAC+TGG 0.390784 2_1:+56204778 None:intergenic
TTGGATTTATCTTAGTAAAT+CGG 0.394986 2_1:-56197958 Msa0213360:three_prime_UTR
GTAGAACCATGAAACAATAT+TGG 0.398741 2_1:-56202795 Msa0213360:five_prime_UTR
ATAAATTGTTGCAGTGGAAC+GGG 0.401057 2_1:-56203284 Msa0213360:intron
TATGCAATTGGCTATGTATA+TGG 0.401191 2_1:-56199226 Msa0213360:CDS
GTCGATTGAGAGACTATGTT+TGG 0.404668 2_1:-56204569 Msa0213360:five_prime_UTR
AATTCTTTACTGGAAGTTGC+TGG 0.407605 2_1:-56202061 Msa0213360:five_prime_UTR
TACAGCTAACTACACCATTA+AGG 0.410735 2_1:+56202912 None:intergenic
ATTTGTTATTTGTGATATCA+AGG 0.411277 2_1:-56202331 Msa0213360:intron
AAACAATGCATAAAGTATCT+TGG 0.412573 2_1:-56198613 Msa0213360:three_prime_UTR
GGTTACATTTATCAGGGAAA+TGG 0.414501 2_1:-56201132 Msa0213360:intron
GAAATATTATACTAAGAATC+AGG 0.415307 2_1:+56202485 None:intergenic
AAAAGAAACAATGAAAATAA+TGG 0.415655 2_1:+56202975 None:intergenic
TTTGAGTACCAATGAACAAA+TGG 0.423392 2_1:-56202853 Msa0213360:five_prime_UTR
AAATTGGGCCCATGACATAT+TGG 0.423673 2_1:-56202379 Msa0213360:five_prime_UTR
AATGGAAGGGCATGTTGTGC+TGG 0.427310 2_1:-56201114 Msa0213360:five_prime_UTR
ATTGGCTCCCTGATTCTATA+GGG 0.431988 2_1:-56202519 Msa0213360:five_prime_UTR
AACTCGTGATCTCAAGCTCC+AGG 0.437646 2_1:-56202563 Msa0213360:five_prime_UTR
AGTTGATGAACCAAGTTGAT+TGG 0.440189 2_1:-56202537 Msa0213360:five_prime_UTR
GTAAAGACCATACAAGGTTT+AGG 0.441670 2_1:-56200393 Msa0213360:five_prime_UTR
TACAGGTGTGGCTTCAGGTC+TGG 0.442197 2_1:-56200415 Msa0213360:five_prime_UTR
GGTTTATGTGTCTCGGAAGT+TGG 0.448136 2_1:-56198223 Msa0213360:three_prime_UTR
TAGCCAATTGCATATCCCTT+TGG 0.448259 2_1:+56199235 None:intergenic
CTTGGTTCATCAACTTGCCC+TGG 0.450773 2_1:+56202545 None:intergenic
GGCCCATGACATATTGGTTG+CGG 0.451368 2_1:-56202373 Msa0213360:five_prime_UTR
AAAATCATACACAAGCAATC+TGG 0.457069 2_1:-56198394 Msa0213360:three_prime_UTR
TAAACTTGCTAGCATAATTG+AGG 0.458592 2_1:-56202602 Msa0213360:five_prime_UTR
ATTGAGGTTTCTGCAAAGAA+AGG 0.460952 2_1:-56202586 Msa0213360:five_prime_UTR
CTCCCGTTGCTATATTGCCC+AGG 0.467870 2_1:-56204728 Msa0213360:five_prime_UTR
GCCAAGTGATTACCTTCGTC+AGG 0.468536 2_1:+56200176 None:intergenic
AATAATGGCAATATCAGATC+AGG 0.468774 2_1:+56199790 None:intergenic
AAGATGTTGCAGCAGTTGCC+TGG 0.470189 2_1:-56200332 Msa0213360:CDS
GATAAATTGTTGCAGTGGAA+CGG 0.481209 2_1:-56203285 Msa0213360:intron
AACCTGGGCAATATAGCAAC+GGG 0.484029 2_1:+56204726 None:intergenic
ATACCAAAGGGATATGCAAT+TGG 0.484511 2_1:-56199238 Msa0213360:CDS
TTATATTATTGTTCATGTCA+TGG 0.490205 2_1:-56202443 Msa0213360:five_prime_UTR
AACTGAACCGGAGAGAAACC+TGG 0.490854 2_1:+56204710 None:intergenic
TCGACTAAGCTACATGAAGA+AGG 0.497978 2_1:+56204587 None:intergenic
ATCATAATTGCTAGCACTCA+AGG 0.498182 2_1:+56202419 None:intergenic
ATTATTGGAGACGTTACCAT+TGG 0.499787 2_1:-56199773 Msa0213360:CDS
GCTGTCATGCTCATCTGCAC+CGG 0.502038 2_1:-56198267 Msa0213360:three_prime_UTR
CTTTGATAATGTTGCGCTGA+TGG 0.506204 2_1:-56202668 Msa0213360:five_prime_UTR
TGGGATTGGCTTACTACACT+TGG 0.508886 2_1:-56197977 Msa0213360:three_prime_UTR
CTGAAGCCACACCTGTAGCT+TGG 0.509069 2_1:+56200421 None:intergenic
ATAAGAACTCATTTAGAAGA+AGG 0.516646 2_1:+56203045 None:intergenic
AGCAACATTGGACCTGCTGC+AGG 0.516938 2_1:-56200302 Msa0213360:intron
GTGCTAATAGACAATGGACT+TGG 0.527032 2_1:+56203498 None:intergenic
TATGAACTTTGTAGATTACA+AGG 0.528266 2_1:-56202009 Msa0213360:intron
CCTGGACTATTGAGCAACAT+TGG 0.538148 2_1:-56200314 Msa0213360:CDS
ACTCATCAAAACTACTCCTC+AGG 0.538645 2_1:-56203120 Msa0213360:five_prime_UTR
TTAGGATGGTTTATGTGTCT+CGG 0.538766 2_1:-56198230 Msa0213360:three_prime_UTR
AATTTAAATTACAAAACGAT+CGG 0.543316 2_1:-56202770 Msa0213360:five_prime_UTR
GGTCTGGTAAAGACCATACA+AGG 0.544364 2_1:-56200399 Msa0213360:five_prime_UTR
AGGTCAGCTATAAACTATCA+TGG 0.544847 2_1:+56202932 None:intergenic
GAATTTAAATAATTAAGTGA+TGG 0.544905 2_1:-56198023 Msa0213360:three_prime_UTR
GAAGCTAGACGCTGCTCCAA+TGG 0.546492 2_1:+56199757 None:intergenic
ATATTGCCCAGGTTTCTCTC+CGG 0.550024 2_1:-56204717 Msa0213360:five_prime_UTR
TTGAGTACCAATGAACAAAT+GGG 0.552900 2_1:-56202852 Msa0213360:five_prime_UTR
TAGTAGAATCTACATGTACT+AGG 0.553796 2_1:-56198129 Msa0213360:three_prime_UTR
AATCAGGGAGCCAATCAACT+TGG 0.557235 2_1:+56202527 None:intergenic
AAGCCGCAACCAATATGTCA+TGG 0.559461 2_1:+56202370 None:intergenic
CTCATTACAAAACATCCACT+TGG 0.559824 2_1:+56198336 None:intergenic
TGAAAACTTACTCGATAAAG+CGG 0.560296 2_1:+56203239 None:intergenic
TGTAACTTATTACCTGCAGC+AGG 0.562977 2_1:+56200290 None:intergenic
TTTGATAATGTTGCGCTGAT+GGG 0.563286 2_1:-56202667 Msa0213360:five_prime_UTR
ATCATCATCGTGTTAATCAA+AGG 0.563532 2_1:-56204677 Msa0213360:intron
CATACAACAATCCAAGCTAC+AGG 0.570176 2_1:-56200432 Msa0213360:five_prime_UTR
CGACTAAGCTACATGAAGAA+GGG 0.571459 2_1:+56204588 None:intergenic
TTTGATATCGTTGAGAATTG+CGG 0.572905 2_1:-56202734 Msa0213360:five_prime_UTR
CCAATGTTGCTCAATAGTCC+AGG 0.573926 2_1:+56200314 None:intergenic
TTTCACCAACTGTTGTGTAT+CGG 0.574904 2_1:+56198173 None:intergenic
GCATTTCACCAAGAACCTAC+AGG 0.580496 2_1:-56203406 Msa0213360:five_prime_UTR
ACATTTATCAGGGAAATGGA+AGG 0.587193 2_1:-56201128 Msa0213360:intron
AGCCGCAACCAATATGTCAT+GGG 0.590721 2_1:+56202371 None:intergenic
ATGATGATGACAAACTGAAC+CGG 0.593153 2_1:+56204698 None:intergenic
CATTTATCAGGGAAATGGAA+GGG 0.594293 2_1:-56201127 Msa0213360:intron
TATGAATACATTGTTTGCGA+GGG 0.598918 2_1:-56198418 Msa0213360:three_prime_UTR
ATAACTTCCCTATAGAATCA+GGG 0.600431 2_1:+56202512 None:intergenic
AAAGATGTGCTAATAGACAA+TGG 0.601442 2_1:+56203492 None:intergenic
TGGAATAACATGAGCACCTG+AGG 0.603313 2_1:+56203104 None:intergenic
CTATGAATACATTGTTTGCG+AGG 0.606558 2_1:-56198419 Msa0213360:three_prime_UTR
GGGGTATCAACACCTCCTGT+AGG 0.607725 2_1:+56203391 None:intergenic
GAGAATTGCGGTCTCTAATG+TGG 0.611232 2_1:-56202722 Msa0213360:five_prime_UTR
GTGATGGTCCTTATTTAGTG+CGG 0.613002 2_1:-56198007 Msa0213360:three_prime_UTR
AAACCTGGGCAATATAGCAA+CGG 0.615257 2_1:+56204725 None:intergenic
TTTAGAAGCACATACCATTG+GGG 0.624275 2_1:+56203371 None:intergenic
GTTGCTAATGACGCAAGAGG+AGG 0.628706 2_1:-56201075 Msa0213360:intron
ACTCGTGATCTCAAGCTCCA+GGG 0.632486 2_1:-56202562 Msa0213360:five_prime_UTR
TCTAGCTTCCTATTTACCAG+AGG 0.641283 2_1:-56199743 Msa0213360:intron
ACTGAACCGGAGAGAAACCT+GGG 0.646721 2_1:+56204711 None:intergenic
GAAACACTTCTCTGCAATCG+CGG 0.646893 2_1:-56198154 Msa0213360:three_prime_UTR
GCTGTTGCTAATGACGCAAG+AGG 0.648895 2_1:-56201078 Msa0213360:five_prime_UTR
AACAATCCAAGCTACAGGTG+TGG 0.660249 2_1:-56200427 Msa0213360:five_prime_UTR
AGCATTCTTGATCCTGACGA+AGG 0.660593 2_1:-56200188 Msa0213360:intron
TTAGAAGCACATACCATTGG+GGG 0.661818 2_1:+56203372 None:intergenic
ATGACTCTGACGATGCCAAG+TGG 0.662805 2_1:-56198351 Msa0213360:three_prime_UTR
GTTGTCCGATACACAACAGT+TGG 0.664066 2_1:-56198178 Msa0213360:three_prime_UTR
GGAAGGGCATGTTGTGCTGG+TGG 0.676502 2_1:-56201111 Msa0213360:five_prime_UTR
CCTGTGACAGTATAAATTTG+GGG 0.677249 2_1:-56202092 Msa0213360:intron
TGGCTATGTATATGGTGGAG+TGG 0.682859 2_1:-56199218 Msa0213360:intron
ATAAATGCAATTAAACTACA+CGG 0.689697 2_1:-56202876 Msa0213360:five_prime_UTR
GCAATTGGCTATGTATATGG+TGG 0.689730 2_1:-56199223 Msa0213360:CDS
GGTTGATGCTGCCTAAATTG+CGG 0.734141 2_1:-56202701 Msa0213360:five_prime_UTR
TTTCACCAAGAACCTACAGG+AGG 0.744614 2_1:-56203403 Msa0213360:five_prime_UTR
GTATGTATCAGAAAACAGTG+TGG 0.872261 2_1:-56199282 Msa0213360:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAATAATTAAATAATGA+AGG + chr2_1:56199152-56199171 None:intergenic 10.0%
!! CAATAATATAAATAACAAAA+TGG + chr2_1:56200281-56200300 None:intergenic 10.0%
!! TTATAAAAAATATTAGCAAA+AGG - chr2_1:56202797-56202816 Msa0213360:five_prime_UTR 10.0%
!! AAAAAAAAAATATTAGCAAA+AGG - chr2_1:56202854-56202873 Msa0213360:five_prime_UTR 10.0%
!!! TTGGAATATTTTATATTATA+TGG - chr2_1:56203377-56203396 Msa0213360:intron 10.0%
!! TTTCTTATGATATTTATGTT+CGG - chr2_1:56198420-56198439 Msa0213360:three_prime_UTR 15.0%
!!! TATGTTTTGGAAAATTTATT+TGG - chr2_1:56198591-56198610 Msa0213360:three_prime_UTR 15.0%
!!! TTTTCTATGTTTTTAGTTTT+TGG - chr2_1:56198727-56198746 Msa0213360:intron 15.0%
!!! TTTCTATGTTTTTAGTTTTT+GGG - chr2_1:56198728-56198747 Msa0213360:intron 15.0%
!! TTTATAGTAATATTTAGTCA+AGG + chr2_1:56198903-56198922 None:intergenic 15.0%
!!! TACTATAAACAATAAACTTT+TGG - chr2_1:56198914-56198933 Msa0213360:intron 15.0%
!!! ATATTGATTTTAGATTTCTT+TGG - chr2_1:56199092-56199111 Msa0213360:intron 15.0%
!!! AGAAAATATTTTTCTTACAA+TGG - chr2_1:56199301-56199320 Msa0213360:intron 15.0%
!!! ATTTTATAAAGGGATTTTTT+AGG - chr2_1:56199544-56199563 Msa0213360:intron 15.0%
!! ATAGTAGTATATTTCAAATA+TGG + chr2_1:56199652-56199671 None:intergenic 15.0%
!! AAAAGAAACAATGAAAATAA+TGG + chr2_1:56199761-56199780 None:intergenic 15.0%
!! AATTTAAATTACAAAACGAT+CGG - chr2_1:56199963-56199982 Msa0213360:intron 15.0%
!!! AAACATCTTAATATTTTTGT+AGG - chr2_1:56200570-56200589 Msa0213360:intron 15.0%
!! TTTATTAAGTTACTACTAAT+TGG + chr2_1:56201018-56201037 None:intergenic 15.0%
!! ATTTATTAAGTTACTACTAA+GGG + chr2_1:56201019-56201038 None:intergenic 15.0%
!! TATTTATTAAGTTACTACTA+AGG + chr2_1:56201020-56201039 None:intergenic 15.0%
!! TAGTAACTTAATAAATATTG+AGG - chr2_1:56201213-56201232 Msa0213360:intron 15.0%
!! AGTAACTTAATAAATATTGA+GGG - chr2_1:56201214-56201233 Msa0213360:intron 15.0%
!!! TGTCTTTTTTTTTTTCTTTT+AGG - chr2_1:56201687-56201706 Msa0213360:intron 15.0%
!! TATTAAATGATTCAGTTATT+AGG - chr2_1:56201823-56201842 Msa0213360:intron 15.0%
!! TTACTACTGAAATAAAATAA+TGG + chr2_1:56203564-56203583 None:intergenic 15.0%
!! AAAAGAAATATGTAAAATTC+AGG + chr2_1:56203966-56203985 None:intergenic 15.0%
!!! TGAATTTTACATATTTCTTT+TGG - chr2_1:56203965-56203984 Msa0213360:intron 15.0%
!! GAATTTAAATAATTAAGTGA+TGG - chr2_1:56204710-56204729 Msa0213360:five_prime_UTR 15.0%
!! TCTTCAAACAAATCAATTAA+AGG + chr2_1:56198349-56198368 None:intergenic 20.0%
!!! ATTGATTTGTTTGAAGATTT+TGG - chr2_1:56198352-56198371 Msa0213360:three_prime_UTR 20.0%
!! TTCTTATGATATTTATGTTC+GGG - chr2_1:56198421-56198440 Msa0213360:three_prime_UTR 20.0%
!!! GTCTAATGATATTTATGTTT+TGG - chr2_1:56198578-56198597 Msa0213360:intron 20.0%
!! AACTAAAAACATAGAAAATC+AGG + chr2_1:56198725-56198744 None:intergenic 20.0%
!!! TGTAGTATTGAACATTATAT+CGG - chr2_1:56199020-56199039 Msa0213360:intron 20.0%
!!! ATGTTGGTAAATTTTACTTT+AGG - chr2_1:56199274-56199293 Msa0213360:CDS 20.0%
!!! TGCTCAATGTTATTTTATAA+AGG - chr2_1:56199533-56199552 Msa0213360:intron 20.0%
!!! GCTCAATGTTATTTTATAAA+GGG - chr2_1:56199534-56199553 Msa0213360:intron 20.0%
!! TATGAAGTTTGAATATTCTT+TGG - chr2_1:56199568-56199587 Msa0213360:intron 20.0%
!! ATAAATGCAATTAAACTACA+CGG - chr2_1:56199857-56199876 Msa0213360:intron 20.0%
!!! GATCGTTTTGTAATTTAAAT+TGG + chr2_1:56199964-56199983 None:intergenic 20.0%
!! GAAATATTATACTAAGAATC+AGG + chr2_1:56200251-56200270 None:intergenic 20.0%
!! TTATATTATTGTTCATGTCA+TGG - chr2_1:56200290-56200309 Msa0213360:intron 20.0%
!!! ATTTGTTATTTGTGATATCA+AGG - chr2_1:56200402-56200421 Msa0213360:five_prime_UTR 20.0%
!! CATATTAAATGTGTATTCAT+TGG - chr2_1:56200811-56200830 Msa0213360:intron 20.0%
!! TAGTTGAAAAAAATTTAGCA+AGG - chr2_1:56200859-56200878 Msa0213360:intron 20.0%
!! AGTTGAAAAAAATTTAGCAA+GGG - chr2_1:56200860-56200879 Msa0213360:intron 20.0%
!!! TGTGTTTTATCTATAAAAGA+GGG + chr2_1:56200922-56200941 None:intergenic 20.0%
!!! ATATTTTAATCTAATAGTGC+GGG + chr2_1:56200957-56200976 None:intergenic 20.0%
!!! CATATTTTAATCTAATAGTG+CGG + chr2_1:56200958-56200977 None:intergenic 20.0%
!!! TTACTACTAATTGGTTTTAA+TGG + chr2_1:56201009-56201028 None:intergenic 20.0%
!! TACATTCTATGTTAAGAAAA+GGG - chr2_1:56201424-56201443 Msa0213360:intron 20.0%
!!! ATTATGGATTTTCTTACTTT+AGG - chr2_1:56201580-56201599 Msa0213360:intron 20.0%
!! AATAAAATAACAATGAGTGA+TGG + chr2_1:56201807-56201826 None:intergenic 20.0%
!! CAACTTAAAATAAAAAGACT+TGG + chr2_1:56201960-56201979 None:intergenic 20.0%
!!! CAAGTCTTTTTATTTTAAGT+TGG - chr2_1:56201958-56201977 Msa0213360:intron 20.0%
!!! AAGGTTAAGCTTTTTATATA+AGG - chr2_1:56202146-56202165 Msa0213360:intron 20.0%
!! TATATCATCAGAAAAGTAAT+AGG + chr2_1:56202516-56202535 None:intergenic 20.0%
!! GATTGAAATTCGAATATAAT+CGG + chr2_1:56202657-56202676 None:intergenic 20.0%
!!! TATAAATCTGGTTTAGAAAA+AGG + chr2_1:56203058-56203077 None:intergenic 20.0%
!! TCATCATATCTATATAAATC+TGG + chr2_1:56203070-56203089 None:intergenic 20.0%
!! TATTATAACTCAAATCACAA+TGG - chr2_1:56203247-56203266 Msa0213360:intron 20.0%
!!! AATGGTTTGTAGATATAATA+TGG - chr2_1:56203319-56203338 Msa0213360:intron 20.0%
!! GAAAGATAAAAAAGAAAACT+AGG - chr2_1:56203585-56203604 Msa0213360:intron 20.0%
!! AGATAAGAAATATCTTAAAC+AGG - chr2_1:56203667-56203686 Msa0213360:intron 20.0%
!! GATAAGAAATATCTTAAACA+GGG - chr2_1:56203668-56203687 Msa0213360:intron 20.0%
!! ATAAGAAATATCTTAAACAG+GGG - chr2_1:56203669-56203688 Msa0213360:intron 20.0%
!! TCACATATAATATAGTGAAT+TGG - chr2_1:56203747-56203766 Msa0213360:intron 20.0%
!! AAAAACATTGAACAACTAAT+GGG + chr2_1:56203851-56203870 None:intergenic 20.0%
!! TAAAAACATTGAACAACTAA+TGG + chr2_1:56203852-56203871 None:intergenic 20.0%
!!! CAATGTTTTTATACTTTCAA+TGG - chr2_1:56203861-56203880 Msa0213360:intron 20.0%
!! AATGTGAAAAATAGTTCAAA+TGG + chr2_1:56203911-56203930 None:intergenic 20.0%
!!! ATTTTTCTCTCTTAATTTAC+AGG - chr2_1:56204037-56204056 Msa0213360:intron 20.0%
!! TTAATTTACAGGTTGTATTT+GGG - chr2_1:56204048-56204067 Msa0213360:intron 20.0%
!! TTGGATTTATCTTAGTAAAT+CGG - chr2_1:56204775-56204794 Msa0213360:five_prime_UTR 20.0%
!! TTTAATCGATTGAGAGATTT+TGG - chr2_1:56198205-56198224 Msa0213360:three_prime_UTR 25.0%
!!! TGTGTTTTTGTTCCATTTTT+TGG - chr2_1:56198255-56198274 Msa0213360:three_prime_UTR 25.0%
!! TATGTTCGGGAAATTTTATT+TGG - chr2_1:56198434-56198453 Msa0213360:three_prime_UTR 25.0%
! TTTGATGTCTCAAAAAATCA+TGG - chr2_1:56198480-56198499 Msa0213360:intron 25.0%
!!! TGAATCATTGAAGCATTTTT+CGG + chr2_1:56198508-56198527 None:intergenic 25.0%
! AATGATTCAGGAAATATGTT+TGG - chr2_1:56198519-56198538 Msa0213360:intron 25.0%
!!! GAGGGTATTCTTAAATATTT+TGG - chr2_1:56198618-56198637 Msa0213360:three_prime_UTR 25.0%
! AAAATGAGATTAAACTGGTT+TGG - chr2_1:56198813-56198832 Msa0213360:intron 25.0%
!! TTGAACATTATATCGGATTT+TGG - chr2_1:56199027-56199046 Msa0213360:intron 25.0%
!! GAAATCTAAAATCAATATCC+AGG + chr2_1:56199090-56199109 None:intergenic 25.0%
! TATACATGTGTGAATAATGA+AGG + chr2_1:56199195-56199214 None:intergenic 25.0%
! TCATTATTCACACATGTATA+TGG - chr2_1:56199195-56199214 Msa0213360:intron 25.0%
!! ATCTTTTGCTTTGATTATGT+TGG - chr2_1:56199258-56199277 Msa0213360:CDS 25.0%
!! TTTGAATATTCTTTGGTTTC+AGG - chr2_1:56199575-56199594 Msa0213360:intron 25.0%
!! ATACTACTATCTTTTAGCAT+TGG - chr2_1:56199662-56199681 Msa0213360:intron 25.0%
! ATAAGAACTCATTTAGAAGA+AGG + chr2_1:56199691-56199710 None:intergenic 25.0%
!!! TTTTCATTGTTTCTTTTGTC+TGG - chr2_1:56199764-56199783 Msa0213360:CDS 25.0%
!!! TTTCATTGTTTCTTTTGTCT+GGG - chr2_1:56199765-56199784 Msa0213360:CDS 25.0%
!! GGAGATTACTAATTCATTTT+TGG - chr2_1:56199902-56199921 Msa0213360:intron 25.0%
!!! GTTTTATAATTTCTAGCTTC+TGG - chr2_1:56200470-56200489 Msa0213360:intron 25.0%
!!! ATCTTAATATTTTTGTAGGC+TGG - chr2_1:56200574-56200593 Msa0213360:intron 25.0%
! TATGAACTTTGTAGATTACA+AGG - chr2_1:56200724-56200743 Msa0213360:intron 25.0%
! TGGAAATGATATAAGTTAGT+TGG - chr2_1:56200762-56200781 Msa0213360:intron 25.0%
! AAAATTTAGCAAGGGAAAAT+TGG - chr2_1:56200868-56200887 Msa0213360:intron 25.0%
!! GTGTGTTTTATCTATAAAAG+AGG + chr2_1:56200923-56200942 None:intergenic 25.0%
! AGTAACTTAATAAATAGCCT+TGG - chr2_1:56201024-56201043 Msa0213360:intron 25.0%
! TCTCATCTCAATATGAATTA+TGG - chr2_1:56201267-56201286 Msa0213360:intron 25.0%
!! GTACATCAGTCTAAATTTTA+CGG + chr2_1:56201407-56201426 None:intergenic 25.0%
! GTACATTCTATGTTAAGAAA+AGG - chr2_1:56201423-56201442 Msa0213360:intron 25.0%
!! TACTTTAGGTTACATTTATC+AGG - chr2_1:56201594-56201613 Msa0213360:intron 25.0%
!! ACTTTAGGTTACATTTATCA+GGG - chr2_1:56201595-56201614 Msa0213360:intron 25.0%
! ATAAATGATAGTTCCAAACA+TGG + chr2_1:56201922-56201941 None:intergenic 25.0%
!!! CTAAGGTTTTTTTAAAAGCA+TGG + chr2_1:56202008-56202027 None:intergenic 25.0%
!!! CATGCTTTTAAAAAAACCTT+AGG - chr2_1:56202006-56202025 Msa0213360:intron 25.0%
! TACTAACATGAATGTAATGA+AGG + chr2_1:56202102-56202121 None:intergenic 25.0%
!! CAGTTTTCTTGCATTTAATT+AGG - chr2_1:56202895-56202914 Msa0213360:five_prime_UTR 25.0%
! AAGAAGAAGCTATATATTAC+GGG + chr2_1:56203143-56203162 None:intergenic 25.0%
! GAAGAAGAAGCTATATATTA+CGG + chr2_1:56203144-56203163 None:intergenic 25.0%
! TAATATATAGCTTCTTCTTC+TGG - chr2_1:56203144-56203163 Msa0213360:intron 25.0%
! GTCAGTTTATTAATATACAG+TGG + chr2_1:56203181-56203200 None:intergenic 25.0%
!! GCTTTTATTCAACATTTCAA+TGG - chr2_1:56203301-56203320 Msa0213360:intron 25.0%
! GTTAGAACCATAAAGAAAAT+AGG + chr2_1:56203417-56203436 None:intergenic 25.0%
! ATACATACACCAATATAAGA+AGG + chr2_1:56203439-56203458 None:intergenic 25.0%
!! ATTTTACATGTGTATACCAA+AGG - chr2_1:56203482-56203501 Msa0213360:five_prime_UTR 25.0%
!! TTTTACATGTGTATACCAAA+GGG - chr2_1:56203483-56203502 Msa0213360:five_prime_UTR 25.0%
! ATATGTGAGAACTAACTAAT+GGG + chr2_1:56203735-56203754 None:intergenic 25.0%
! TATATGTGAGAACTAACTAA+TGG + chr2_1:56203736-56203755 None:intergenic 25.0%
! CATATAAGATGATTTCAATG+TGG - chr2_1:56203802-56203821 Msa0213360:intron 25.0%
!! AAAAAGTATATCAGATTCAG+AGG - chr2_1:56203989-56204008 Msa0213360:intron 25.0%
! CTTAATTTACAGGTTGTATT+TGG - chr2_1:56204047-56204066 Msa0213360:intron 25.0%
!! GATACTTTATGCATTGTTTT+CGG + chr2_1:56204119-56204138 None:intergenic 25.0%
!! AAACAATGCATAAAGTATCT+TGG - chr2_1:56204120-56204139 Msa0213360:intron 25.0%
! CTTAATAATTCGTAAATAGC+TGG - chr2_1:56204281-56204300 Msa0213360:intron 25.0%
!!! GTTTTTATTGTGTCATTCTT+CGG - chr2_1:56204444-56204463 Msa0213360:intron 25.0%
! GGTCTAATTATTCAAGTATA+TGG - chr2_1:56204655-56204674 Msa0213360:intron 25.0%
!! CTGGCTTTATATAGTGTAAA+AGG + chr2_1:56197939-56197958 None:intergenic 30.0%
ATCATCATCGTGTTAATCAA+AGG - chr2_1:56198056-56198075 Msa0213360:three_prime_UTR 30.0%
ATGCATGCAGATAAGAAAAT+CGG + chr2_1:56198089-56198108 None:intergenic 30.0%
!!! GAGAGATTTTGGTTTGATTT+TGG - chr2_1:56198216-56198235 Msa0213360:three_prime_UTR 30.0%
GAACAGAATCAACCAAAAAA+TGG + chr2_1:56198270-56198289 None:intergenic 30.0%
!!! GAGAGATTTTGGTTTGATTT+TGG - chr2_1:56198216-56198235 Msa0213360:three_prime_UTR 30.0%
!! GTTTGATTTTGGTCGATTAT+GGG - chr2_1:56198388-56198407 Msa0213360:three_prime_UTR 30.0%
!!! GAAATTTTATTTGGTGGTGA+GGG - chr2_1:56198443-56198462 Msa0213360:intron 30.0%
GAAAAATGCTTCAATGATTC+AGG - chr2_1:56198507-56198526 Msa0213360:intron 30.0%
GAAAATTTATTTGGCTGTGA+GGG - chr2_1:56198600-56198619 Msa0213360:three_prime_UTR 30.0%
TTGGTAGATTAATGTATGAC+TGG - chr2_1:56198637-56198656 Msa0213360:three_prime_UTR 30.0%
TATGACTGGATTATGAATGA+GGG - chr2_1:56198651-56198670 Msa0213360:exon 30.0%
AGGGAATTTGAATCTTCTTT+GGG - chr2_1:56198670-56198689 Msa0213360:CDS 30.0%
!! CCAGTTTAATCTCATTTTTG+TGG + chr2_1:56198811-56198830 None:intergenic 30.0%
CCACAAAAATGAGATTAAAC+TGG - chr2_1:56198808-56198827 Msa0213360:intron 30.0%
!! TTGAAAGTCTTTCGTTTTTG+TGG - chr2_1:56198965-56198984 Msa0213360:intron 30.0%
GCTGTTGAATTCACAAAATT+TGG - chr2_1:56199058-56199077 Msa0213360:intron 30.0%
AAAGATGTGCTAATAGACAA+TGG + chr2_1:56199244-56199263 None:intergenic 30.0%
CTTCTAAACTAAATGCTTTG+AGG - chr2_1:56199377-56199396 Msa0213360:intron 30.0%
TGTTTGATAAATTGTTGCAG+TGG - chr2_1:56199443-56199462 Msa0213360:intron 30.0%
TGAAAACTTACTCGATAAAG+CGG + chr2_1:56199497-56199516 None:intergenic 30.0%
TAGTTTATAGCTGACCTTAA+TGG - chr2_1:56199807-56199826 Msa0213360:CDS 30.0%
TTTGAGTACCAATGAACAAA+TGG - chr2_1:56199880-56199899 Msa0213360:intron 30.0%
TTGAGTACCAATGAACAAAT+GGG - chr2_1:56199881-56199900 Msa0213360:intron 30.0%
GTAGAACCATGAAACAATAT+TGG - chr2_1:56199938-56199957 Msa0213360:intron 30.0%
AATTGGCCAATATTGTTTCA+TGG + chr2_1:56199947-56199966 None:intergenic 30.0%
TTTGATATCGTTGAGAATTG+CGG - chr2_1:56199999-56200018 Msa0213360:intron 30.0%
!! TAAACTTGCTAGCATAATTG+AGG - chr2_1:56200131-56200150 Msa0213360:intron 30.0%
ATAACTTCCCTATAGAATCA+GGG + chr2_1:56200224-56200243 None:intergenic 30.0%
TATAACTTCCCTATAGAATC+AGG + chr2_1:56200225-56200244 None:intergenic 30.0%
ACATTGCAATGTAAATATGC+AGG - chr2_1:56200510-56200529 Msa0213360:intron 30.0%
!!! TACTAATTGGTTTTAATGGC+AGG + chr2_1:56201005-56201024 None:intergenic 30.0%
!!! TACCTTGTTTTTTACACAAG+AGG + chr2_1:56201111-56201130 None:intergenic 30.0%
CTTGTGTAAAAAACAAGGTA+AGG - chr2_1:56201111-56201130 Msa0213360:five_prime_UTR 30.0%
TCTCTATCTAAACTTTCAGA+TGG - chr2_1:56201341-56201360 Msa0213360:intron 30.0%
TATCTAAACTTTCAGATGGA+AGG - chr2_1:56201345-56201364 Msa0213360:intron 30.0%
ATTATCAGTAACCATACACA+AGG - chr2_1:56201846-56201865 Msa0213360:intron 30.0%
TTATCAGTAACCATACACAA+GGG - chr2_1:56201847-56201866 Msa0213360:intron 30.0%
TAACCTCAATACTATGTTGA+TGG - chr2_1:56202069-56202088 Msa0213360:five_prime_UTR 30.0%
AGATCTCAACACAGTTAAAA+GGG + chr2_1:56202491-56202510 None:intergenic 30.0%
AATAATGGCAATATCAGATC+AGG + chr2_1:56202946-56202965 None:intergenic 30.0%
TGATCTGATATTGCCATTAT+TGG - chr2_1:56202945-56202964 Msa0213360:five_prime_UTR 30.0%
AATATACAGTGGCAATGAAA+AGG + chr2_1:56203170-56203189 None:intergenic 30.0%
TAGATATAATATGGCAACAC+TGG - chr2_1:56203328-56203347 Msa0213360:intron 30.0%
AAATATTCCAACTGTCAAGA+AGG + chr2_1:56203368-56203387 None:intergenic 30.0%
! TTTGCTGCCTATTTTCTTTA+TGG - chr2_1:56203407-56203426 Msa0213360:five_prime_UTR 30.0%
!! TGGTTCTAACCTTCTTATAT+TGG - chr2_1:56203427-56203446 Msa0213360:five_prime_UTR 30.0%
TATGCAATTGGCTATGTATA+TGG - chr2_1:56203507-56203526 Msa0213360:five_prime_UTR 30.0%
!! TTATACTCATTGACTTGCAA+AGG - chr2_1:56203936-56203955 Msa0213360:intron 30.0%
TATATCAGATTCAGAGGAAA+CGG - chr2_1:56203995-56204014 Msa0213360:intron 30.0%
ATTATTAAGAAATGACCAGC+TGG + chr2_1:56204270-56204289 None:intergenic 30.0%
TATGAATACATTGTTTGCGA+GGG - chr2_1:56204315-56204334 Msa0213360:intron 30.0%
AAAATCATACACAAGCAATC+TGG - chr2_1:56204339-56204358 Msa0213360:intron 30.0%
! TTGTAATGAGATTTTGTAGC+TGG - chr2_1:56204410-56204429 Msa0213360:intron 30.0%
TAGTAGAATCTACATGTACT+AGG - chr2_1:56204604-56204623 Msa0213360:intron 30.0%
TTGGTATCTTGAGATGTTTA+GGG - chr2_1:56204634-56204653 Msa0213360:intron 30.0%
AAAATGTTCCGCACTAAATA+AGG + chr2_1:56204737-56204756 None:intergenic 30.0%
! TTATTTAGTGCGGAACATTT+TGG - chr2_1:56204736-56204755 Msa0213360:five_prime_UTR 30.0%
! TATTTAGTGCGGAACATTTT+GGG - chr2_1:56204737-56204756 Msa0213360:five_prime_UTR 30.0%
GAGTCTCTCAATCTTATAAC+TGG + chr2_1:56197958-56197977 None:intergenic 35.0%
! ATGATGATGACAAACTGAAC+CGG + chr2_1:56198038-56198057 None:intergenic 35.0%
TCATCGTGTTAATCAAAGGT+TGG - chr2_1:56198060-56198079 Msa0213360:three_prime_UTR 35.0%
!!! AGATTTTGGCTGAGAGATTT+TGG - chr2_1:56198366-56198385 Msa0213360:three_prime_UTR 35.0%
!! GGTTTGATTTTGGTCGATTA+TGG - chr2_1:56198387-56198406 Msa0213360:three_prime_UTR 35.0%
!! GTTCGGGAAATTTTATTTGG+TGG - chr2_1:56198437-56198456 Msa0213360:intron 35.0%
!!! GGAAATTTTATTTGGTGGTG+AGG - chr2_1:56198442-56198461 Msa0213360:intron 35.0%
GGAAAATTTATTTGGCTGTG+AGG - chr2_1:56198599-56198618 Msa0213360:three_prime_UTR 35.0%
GTATGACTGGATTATGAATG+AGG - chr2_1:56198650-56198669 Msa0213360:exon 35.0%
GAGGGAATTTGAATCTTCTT+TGG - chr2_1:56198669-56198688 Msa0213360:CDS 35.0%
! GAGTTTTCTTTGTGTACCTT+TGG - chr2_1:56198776-56198795 Msa0213360:intron 35.0%
TTTGTGGATTCAACAACCAA+AGG + chr2_1:56198795-56198814 None:intergenic 35.0%
!! ATATCGGATTTTGGTGACTT+TGG - chr2_1:56199036-56199055 Msa0213360:intron 35.0%
CACAAAATTTGGATAAGACC+TGG - chr2_1:56199069-56199088 Msa0213360:intron 35.0%
! TTTAGAAGCACATACCATTG+GGG + chr2_1:56199365-56199384 None:intergenic 35.0%
! GTTTAGAAGCACATACCATT+GGG + chr2_1:56199366-56199385 None:intergenic 35.0%
! AGTTTAGAAGCACATACCAT+TGG + chr2_1:56199367-56199386 None:intergenic 35.0%
!!! ATGCTTTGAGGAGTTTTATG+TGG - chr2_1:56199389-56199408 Msa0213360:intron 35.0%
GATAAATTGTTGCAGTGGAA+CGG - chr2_1:56199448-56199467 Msa0213360:intron 35.0%
ATAAATTGTTGCAGTGGAAC+GGG - chr2_1:56199449-56199468 Msa0213360:intron 35.0%
!! TCGATAAAGCGGACTATATT+TGG + chr2_1:56199486-56199505 None:intergenic 35.0%
ACTATCATGGTTCCTTGATT+TGG + chr2_1:56199791-56199810 None:intergenic 35.0%
AGGTCAGCTATAAACTATCA+TGG + chr2_1:56199804-56199823 None:intergenic 35.0%
TACAGCTAACTACACCATTA+AGG + chr2_1:56199824-56199843 None:intergenic 35.0%
GTAATCTCCCATTTGTTCAT+TGG + chr2_1:56199891-56199910 None:intergenic 35.0%
! TTGTTTCATGGTTCTACGTT+TGG + chr2_1:56199935-56199954 None:intergenic 35.0%
!! TTTGATAATGTTGCGCTGAT+GGG - chr2_1:56200066-56200085 Msa0213360:intron 35.0%
ATTGAGGTTTCTGCAAAGAA+AGG - chr2_1:56200147-56200166 Msa0213360:intron 35.0%
!! AGTTGATGAACCAAGTTGAT+TGG - chr2_1:56200196-56200215 Msa0213360:intron 35.0%
ATCATAATTGCTAGCACTCA+AGG + chr2_1:56200317-56200336 None:intergenic 35.0%
ACAGCCACAGTTGTAAAAAT+TGG - chr2_1:56200338-56200357 Msa0213360:CDS 35.0%
CAGCCACAGTTGTAAAAATT+GGG - chr2_1:56200339-56200358 Msa0213360:CDS 35.0%
!!! GTCACTCTGAAACTGATTTT+AGG - chr2_1:56200448-56200467 Msa0213360:intron 35.0%
TATGCAGGATAGAGATATCT+AGG - chr2_1:56200525-56200544 Msa0213360:intron 35.0%
ATGCAGGATAGAGATATCTA+GGG - chr2_1:56200526-56200545 Msa0213360:intron 35.0%
ACCCTGTGACAGTATAAATT+TGG - chr2_1:56200639-56200658 Msa0213360:intron 35.0%
CCCAAATTTATACTGTCACA+GGG + chr2_1:56200643-56200662 None:intergenic 35.0%
CCCTGTGACAGTATAAATTT+GGG - chr2_1:56200640-56200659 Msa0213360:intron 35.0%
CCTGTGACAGTATAAATTTG+GGG - chr2_1:56200641-56200660 Msa0213360:intron 35.0%
GGATCAGCTAAATTCTTTAC+TGG - chr2_1:56200662-56200681 Msa0213360:intron 35.0%
AATTCTTTACTGGAAGTTGC+TGG - chr2_1:56200672-56200691 Msa0213360:intron 35.0%
GTAGATTACAAGGTAGATAC+TGG - chr2_1:56200734-56200753 Msa0213360:intron 35.0%
AGCCTCTTGTGTAAAAAACA+AGG - chr2_1:56201106-56201125 Msa0213360:five_prime_UTR 35.0%
ATGCATGTATGTGTCTCATT+AGG - chr2_1:56201478-56201497 Msa0213360:intron 35.0%
GGATTTGAAAATGTGCACTT+TGG + chr2_1:56201530-56201549 None:intergenic 35.0%
TCTCATCTTCGAAGAGATTA+TGG - chr2_1:56201564-56201583 Msa0213360:intron 35.0%
GGTTACATTTATCAGGGAAA+TGG - chr2_1:56201601-56201620 Msa0213360:intron 35.0%
ACATTTATCAGGGAAATGGA+AGG - chr2_1:56201605-56201624 Msa0213360:intron 35.0%
CATTTATCAGGGAAATGGAA+GGG - chr2_1:56201606-56201625 Msa0213360:intron 35.0%
TATCAGTAACCATACACAAG+GGG - chr2_1:56201848-56201867 Msa0213360:intron 35.0%
AAAACATAACCCCTTGTGTA+TGG + chr2_1:56201860-56201879 None:intergenic 35.0%
! TACACAAGGGGTTATGTTTT+AGG - chr2_1:56201860-56201879 Msa0213360:intron 35.0%
! TGGTATGTGTGCTATTGATA+TGG - chr2_1:56201978-56201997 Msa0213360:intron 35.0%
AAGCCATCAACATAGTATTG+AGG + chr2_1:56202075-56202094 None:intergenic 35.0%
TAACCTTGTCACAAATGGAT+TGG + chr2_1:56202133-56202152 None:intergenic 35.0%
AAGCTTAACCTTGTCACAAA+TGG + chr2_1:56202138-56202157 None:intergenic 35.0%
TTGTGCTTATCATGTTCAGT+TGG - chr2_1:56202273-56202292 Msa0213360:intron 35.0%
GTAAAGACCATACAAGGTTT+AGG - chr2_1:56202340-56202359 Msa0213360:five_prime_UTR 35.0%
! TTTGAAGCCTAAACCTTGTA+TGG + chr2_1:56202350-56202369 None:intergenic 35.0%
CAGATCTCAACACAGTTAAA+AGG + chr2_1:56202492-56202511 None:intergenic 35.0%
CACAGTCTTAATAGATAGCA+AGG + chr2_1:56202596-56202615 None:intergenic 35.0%
AAAACTGTATCCCATGATGA+GGG - chr2_1:56202731-56202750 Msa0213360:five_prime_UTR 35.0%
! AATGGTAACGTCTCCAATAA+TGG + chr2_1:56202961-56202980 None:intergenic 35.0%
ATTATTGGAGACGTTACCAT+TGG - chr2_1:56202960-56202979 Msa0213360:five_prime_UTR 35.0%
TGACATTACCTCTGGTAAAT+AGG + chr2_1:56203001-56203020 None:intergenic 35.0%
CATTGATATGACATTACCTC+TGG + chr2_1:56203009-56203028 None:intergenic 35.0%
CTATATATTACGGGACTAAG+GGG + chr2_1:56203134-56203153 None:intergenic 35.0%
GCTATATATTACGGGACTAA+GGG + chr2_1:56203135-56203154 None:intergenic 35.0%
AGCTATATATTACGGGACTA+AGG + chr2_1:56203136-56203155 None:intergenic 35.0%
CTCAAATCACAATGGAAACT+TGG - chr2_1:56203255-56203274 Msa0213360:five_prime_UTR 35.0%
TTTCTTACCTTCTTGACAGT+TGG - chr2_1:56203358-56203377 Msa0213360:intron 35.0%
GTATGTATCAGAAAACAGTG+TGG - chr2_1:56203451-56203470 Msa0213360:five_prime_UTR 35.0%
ATACCAAAGGGATATGCAAT+TGG - chr2_1:56203495-56203514 Msa0213360:five_prime_UTR 35.0%
TACAGGTTGTATTTGGGAAA+TGG - chr2_1:56204054-56204073 Msa0213360:intron 35.0%
ACAGGTTGTATTTGGGAAAT+GGG - chr2_1:56204055-56204074 Msa0213360:intron 35.0%
CTATGAATACATTGTTTGCG+AGG - chr2_1:56204314-56204333 Msa0213360:intron 35.0%
CTCATTACAAAACATCCACT+TGG + chr2_1:56204400-56204419 None:intergenic 35.0%
TTAGGATGGTTTATGTGTCT+CGG - chr2_1:56204503-56204522 Msa0213360:intron 35.0%
TTTCACCAACTGTTGTGTAT+CGG + chr2_1:56204563-56204582 None:intergenic 35.0%
! ACATGTACTAGGACTTTTGT+TGG - chr2_1:56204615-56204634 Msa0213360:intron 35.0%
GTTGGTATCTTGAGATGTTT+AGG - chr2_1:56204633-56204652 Msa0213360:intron 35.0%
AAACCTGGGCAATATAGCAA+CGG + chr2_1:56198011-56198030 None:intergenic 40.0%
CGACTAAGCTACATGAAGAA+GGG + chr2_1:56198148-56198167 None:intergenic 40.0%
TCGACTAAGCTACATGAAGA+AGG + chr2_1:56198149-56198168 None:intergenic 40.0%
GTCGATTGAGAGACTATGTT+TGG - chr2_1:56198164-56198183 Msa0213360:three_prime_UTR 40.0%
!! GAATCTTCTTTGGGTTGATG+AGG - chr2_1:56198679-56198698 Msa0213360:intron 40.0%
! GGATGAACAGCTTCTAAGAA+TGG - chr2_1:56198749-56198768 Msa0213360:intron 40.0%
! GTGCTAATAGACAATGGACT+TGG + chr2_1:56199238-56199257 None:intergenic 40.0%
! TTAGAAGCACATACCATTGG+GGG + chr2_1:56199364-56199383 None:intergenic 40.0%
ACTCATCAAAACTACTCCTC+AGG - chr2_1:56199613-56199632 Msa0213360:intron 40.0%
GTCTAATTCGACCGCAATTT+AGG + chr2_1:56200046-56200065 None:intergenic 40.0%
!! CTTTGATAATGTTGCGCTGA+TGG - chr2_1:56200065-56200084 Msa0213360:intron 40.0%
!! CGTTGTTTTGTAGGTCAAGA+TGG - chr2_1:56200090-56200109 Msa0213360:intron 40.0%
! ATTGGCTCCCTGATTCTATA+GGG - chr2_1:56200214-56200233 Msa0213360:intron 40.0%
AAATTGGGCCCATGACATAT+TGG - chr2_1:56200354-56200373 Msa0213360:exon 40.0%
TGCAGGATAGAGATATCTAG+GGG - chr2_1:56200527-56200546 Msa0213360:intron 40.0%
CCCCAAATTTATACTGTCAC+AGG + chr2_1:56200644-56200663 None:intergenic 40.0%
AGGTGTAAATCAGTCTCTCT+GGG + chr2_1:56200985-56201004 None:intergenic 40.0%
! ATAAATAGCCTTGGCGCAAT+TGG - chr2_1:56201033-56201052 Msa0213360:intron 40.0%
TAAAGTTGTTGTCCTGTGAC+TGG - chr2_1:56201056-56201075 Msa0213360:intron 40.0%
TGCGTACAATACCAAATGGT+GGG - chr2_1:56201135-56201154 Msa0213360:intron 40.0%
GATGAGAAGACATGTTGCAA+AGG + chr2_1:56201551-56201570 None:intergenic 40.0%
!! AAGGGGTTATGTTTTAGGCA+AGG - chr2_1:56201865-56201884 Msa0213360:intron 40.0%
ACACCAATCCATTTGTGACA+AGG - chr2_1:56202127-56202146 Msa0213360:intron 40.0%
CACATCTTAAATTGCCAGTC+AGG + chr2_1:56202191-56202210 None:intergenic 40.0%
CATACAACAATCCAAGCTAC+AGG - chr2_1:56202301-56202320 Msa0213360:intron 40.0%
TGTAACTTATTACCTGCAGC+AGG + chr2_1:56202446-56202465 None:intergenic 40.0%
CAAAACTGTATCCCATGATG+AGG - chr2_1:56202730-56202749 Msa0213360:five_prime_UTR 40.0%
AAACTGTATCCCATGATGAG+GGG - chr2_1:56202732-56202751 Msa0213360:five_prime_UTR 40.0%
! TCTAGCTTCCTATTTACCAG+AGG - chr2_1:56202990-56203009 Msa0213360:five_prime_UTR 40.0%
TAGCCAATTGCATATCCCTT+TGG + chr2_1:56203501-56203520 None:intergenic 40.0%
GCAATTGGCTATGTATATGG+TGG - chr2_1:56203510-56203529 Msa0213360:five_prime_UTR 40.0%
CTTAAACAGGGGAGAAAACT+AGG - chr2_1:56203680-56203699 Msa0213360:intron 40.0%
! ATGCATTGTTTTCGGAGCTT+TGG + chr2_1:56204111-56204130 None:intergenic 40.0%
GACTACATGCGTCTGTTTAT+TGG - chr2_1:56204142-56204161 Msa0213360:intron 40.0%
!! GATTTTGTAGCTGGTCTGTT+CGG - chr2_1:56204419-56204438 Msa0213360:intron 40.0%
!! TGTTTTTGCAGTGGTTAGGA+TGG - chr2_1:56204489-56204508 Msa0213360:intron 40.0%
! GTGATGGTCCTTATTTAGTG+CGG - chr2_1:56204726-56204745 Msa0213360:five_prime_UTR 40.0%
GGGAGAGAAAGCTGAGAAAT+AGG + chr2_1:56197990-56198009 None:intergenic 45.0%
AACCTGGGCAATATAGCAAC+GGG + chr2_1:56198010-56198029 None:intergenic 45.0%
ATATTGCCCAGGTTTCTCTC+CGG - chr2_1:56198016-56198035 Msa0213360:three_prime_UTR 45.0%
!! CTGGTTTGGAGTAGAATAGC+TGG - chr2_1:56198827-56198846 Msa0213360:intron 45.0%
GCATTTCACCAAGAACCTAC+AGG - chr2_1:56199327-56199346 Msa0213360:intron 45.0%
TTTCACCAAGAACCTACAGG+AGG - chr2_1:56199330-56199349 Msa0213360:intron 45.0%
TGGAATAACATGAGCACCTG+AGG + chr2_1:56199632-56199651 None:intergenic 45.0%
! CTTTTGTCTGGGCCAAATCA+AGG - chr2_1:56199776-56199795 Msa0213360:CDS 45.0%
GAGAATTGCGGTCTCTAATG+TGG - chr2_1:56200011-56200030 Msa0213360:intron 45.0%
! GGTTGATGCTGCCTAAATTG+CGG - chr2_1:56200032-56200051 Msa0213360:intron 45.0%
!! CTGATGGGACGTTGTTTTGT+AGG - chr2_1:56200081-56200100 Msa0213360:intron 45.0%
AATCAGGGAGCCAATCAACT+TGG + chr2_1:56200209-56200228 None:intergenic 45.0%
! GATTGGCTCCCTGATTCTAT+AGG - chr2_1:56200213-56200232 Msa0213360:intron 45.0%
! GGGCCCAATTTTTACAACTG+TGG + chr2_1:56200345-56200364 None:intergenic 45.0%
AGCCGCAACCAATATGTCAT+GGG + chr2_1:56200365-56200384 None:intergenic 45.0%
AAGCCGCAACCAATATGTCA+TGG + chr2_1:56200366-56200385 None:intergenic 45.0%
CAAGGTAGATACTGGACTTC+TGG - chr2_1:56200742-56200761 Msa0213360:intron 45.0%
CAGGTGTAAATCAGTCTCTC+TGG + chr2_1:56200986-56201005 None:intergenic 45.0%
CAACTTTACCAATTGCGCCA+AGG + chr2_1:56201044-56201063 None:intergenic 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr2_1:56201100-56201119 None:intergenic 45.0%
AGGCTGCGTACAATACCAAA+TGG - chr2_1:56201131-56201150 Msa0213360:intron 45.0%
CTGCGTACAATACCAAATGG+TGG - chr2_1:56201134-56201153 Msa0213360:intron 45.0%
AGTTACTACTAAGGGCAACC+CGG + chr2_1:56201201-56201220 None:intergenic 45.0%
GAGTGATGGTCACAATAGCT+CGG + chr2_1:56201793-56201812 None:intergenic 45.0%
AACAATCCAAGCTACAGGTG+TGG - chr2_1:56202306-56202325 Msa0213360:intron 45.0%
GGTCTGGTAAAGACCATACA+AGG - chr2_1:56202334-56202353 Msa0213360:five_prime_UTR 45.0%
CCAATGTTGCTCAATAGTCC+AGG + chr2_1:56202422-56202441 None:intergenic 45.0%
CCTGGACTATTGAGCAACAT+TGG - chr2_1:56202419-56202438 Msa0213360:five_prime_UTR 45.0%
AGCATTCTTGATCCTGACGA+AGG - chr2_1:56202545-56202564 Msa0213360:five_prime_UTR 45.0%
TCCTGACGAAGGTAATCACT+TGG - chr2_1:56202556-56202575 Msa0213360:five_prime_UTR 45.0%
ACACTAATGCCCCTCATCAT+GGG + chr2_1:56202744-56202763 None:intergenic 45.0%
GGCATTAGTGTGCAGTTTGA+CGG - chr2_1:56202753-56202772 Msa0213360:five_prime_UTR 45.0%
!! GTGTGCAGTTTGACGGATTT+AGG - chr2_1:56202760-56202779 Msa0213360:five_prime_UTR 45.0%
! TGGCTATGTATATGGTGGAG+TGG - chr2_1:56203515-56203534 Msa0213360:five_prime_UTR 45.0%
!! TGTTTTCGGAGCTTTGGTCA+GGG + chr2_1:56204105-56204124 None:intergenic 45.0%
!! TTGTTTTCGGAGCTTTGGTC+AGG + chr2_1:56204106-56204125 None:intergenic 45.0%
!! TTCCTGCTTTTCTAACCAGC+TGG - chr2_1:56204252-56204271 Msa0213360:intron 45.0%
CCTAACCACTGCAAAAACAC+CGG + chr2_1:56204488-56204507 None:intergenic 45.0%
GGTTTATGTGTCTCGGAAGT+TGG - chr2_1:56204510-56204529 Msa0213360:intron 45.0%
TGTGTCTCGGAAGTTGGAAT+TGG - chr2_1:56204516-56204535 Msa0213360:intron 45.0%
GTTGTCCGATACACAACAGT+TGG - chr2_1:56204555-56204574 Msa0213360:intron 45.0%
GAAACACTTCTCTGCAATCG+CGG - chr2_1:56204579-56204598 Msa0213360:five_prime_UTR 45.0%
!!! AGTGCGGAACATTTTGGGAT+TGG - chr2_1:56204742-56204761 Msa0213360:five_prime_UTR 45.0%
!! TGGGATTGGCTTACTACACT+TGG - chr2_1:56204756-56204775 Msa0213360:five_prime_UTR 45.0%
ACTGAACCGGAGAGAAACCT+GGG + chr2_1:56198025-56198044 None:intergenic 50.0%
AACTGAACCGGAGAGAAACC+TGG + chr2_1:56198026-56198045 None:intergenic 50.0%
!! TCTTTGGGTTGATGAGGTGC+AGG - chr2_1:56198685-56198704 Msa0213360:intron 50.0%
CAACACCTCCTGTAGGTTCT+TGG + chr2_1:56199338-56199357 None:intergenic 50.0%
AACTCGTGATCTCAAGCTCC+AGG - chr2_1:56200170-56200189 Msa0213360:intron 50.0%
ACTCGTGATCTCAAGCTCCA+GGG - chr2_1:56200171-56200190 Msa0213360:intron 50.0%
CTTGGTTCATCAACTTGCCC+TGG + chr2_1:56200191-56200210 None:intergenic 50.0%
! GGCCCATGACATATTGGTTG+CGG - chr2_1:56200360-56200379 Msa0213360:exon 50.0%
GTTGTTGTCCTGTGACTGGA+AGG - chr2_1:56201060-56201079 Msa0213360:intron 50.0%
TCCTGTGACTGGAAGGTCAT+GGG - chr2_1:56201067-56201086 Msa0213360:intron 50.0%
AAGGTCATGGGTTCAAGTCC+TGG - chr2_1:56201079-56201098 Msa0213360:five_prime_UTR 50.0%
! AATGGAAGGGCATGTTGTGC+TGG - chr2_1:56201619-56201638 Msa0213360:intron 50.0%
GCTGTTGCTAATGACGCAAG+AGG - chr2_1:56201655-56201674 Msa0213360:intron 50.0%
GTTGCTAATGACGCAAGAGG+AGG - chr2_1:56201658-56201677 Msa0213360:intron 50.0%
CGGCTCAACTAACTCTGTTG+TGG - chr2_1:56202045-56202064 Msa0213360:five_prime_UTR 50.0%
AGTGCTCATGATGTCCTGAC+TGG - chr2_1:56202174-56202193 Msa0213360:intron 50.0%
AAGATGTTGCAGCAGTTGCC+TGG - chr2_1:56202401-56202420 Msa0213360:five_prime_UTR 50.0%
GCCAAGTGATTACCTTCGTC+AGG + chr2_1:56202560-56202579 None:intergenic 50.0%
CACACTAATGCCCCTCATCA+TGG + chr2_1:56202745-56202764 None:intergenic 50.0%
!! GTTTTCGGAGCTTTGGTCAG+GGG + chr2_1:56204104-56204123 None:intergenic 50.0%
GACCAGCTGGTTAGAAAAGC+AGG + chr2_1:56204257-56204276 None:intergenic 50.0%
ATGACTCTGACGATGCCAAG+TGG - chr2_1:56204382-56204401 Msa0213360:intron 50.0%
!! CCGGTGTTTTTGCAGTGGTT+AGG - chr2_1:56204485-56204504 Msa0213360:intron 50.0%
CTCCCGTTGCTATATTGCCC+AGG - chr2_1:56198005-56198024 Msa0213360:three_prime_UTR 55.0%
! GGGGTATCAACACCTCCTGT+AGG + chr2_1:56199345-56199364 None:intergenic 55.0%
!! GGAGGTGTTGATACCCCCAA+TGG - chr2_1:56199348-56199367 Msa0213360:intron 55.0%
GTCCTGTGACTGGAAGGTCA+TGG - chr2_1:56201066-56201085 Msa0213360:intron 55.0%
ACCCATGACCTTCCAGTCAC+AGG + chr2_1:56201071-56201090 None:intergenic 55.0%
CTAAAGCTCCCGCATACGCA+GGG + chr2_1:56201174-56201193 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG + chr2_1:56201175-56201194 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG - chr2_1:56201179-56201198 Msa0213360:intron 55.0%
CAGCTGGTGTAGGTTGCCTA+AGG + chr2_1:56202025-56202044 None:intergenic 55.0%
TAGGCAACCTACACCAGCTG+CGG - chr2_1:56202025-56202044 Msa0213360:five_prime_UTR 55.0%
AGAGTTAGTTGAGCCGCAGC+TGG + chr2_1:56202041-56202060 None:intergenic 55.0%
CTGAAGCCACACCTGTAGCT+TGG + chr2_1:56202315-56202334 None:intergenic 55.0%
CAAGCTACAGGTGTGGCTTC+AGG - chr2_1:56202313-56202332 Msa0213360:intron 55.0%
TACAGGTGTGGCTTCAGGTC+TGG - chr2_1:56202318-56202337 Msa0213360:intron 55.0%
AGCAACATTGGACCTGCTGC+AGG - chr2_1:56202431-56202450 Msa0213360:five_prime_UTR 55.0%
GAAGCTAGACGCTGCTCCAA+TGG + chr2_1:56202979-56202998 None:intergenic 55.0%
GCTGTCATGCTCATCTGCAC+CGG - chr2_1:56204466-56204485 Msa0213360:intron 55.0%
!! CTGCACCGGTGTTTTTGCAG+TGG - chr2_1:56204480-56204499 Msa0213360:intron 55.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr2_1:56201147-56201166 Msa0213360:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG - chr2_1:56201180-56201199 Msa0213360:intron 60.0%
! GGAAGGGCATGTTGTGCTGG+TGG - chr2_1:56201622-56201641 Msa0213360:intron 60.0%
AGTTGAGCCGCAGCTGGTGT+AGG + chr2_1:56202035-56202054 None:intergenic 60.0%
CGGGAAGGGGTCCCACCATT+TGG + chr2_1:56201149-56201168 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG + chr2_1:56201162-56201181 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr2_1:56201163-56201182 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr2_1:56201162-56201181 Msa0213360:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr2_1:56201163-56201182 Msa0213360:intron 65.0%
CGCATACGCAGGGTCCGGGA+AGG + chr2_1:56201164-56201183 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + chr2_1:56201168-56201187 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + chr2_1:56201169-56201188 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 56197919 56204836 56197919 ID=Msa0213360;Name=Msa0213360
chr2_1 mRNA 56197919 56204836 56197919 ID=Msa0213360-mRNA-1;Parent=Msa0213360;Name=Msa0213360-mRNA-1;_AED=0.26;_eAED=0.26;_QI=1519|1|1|1|0.58|0.38|13|618|93
chr2_1 exon 56197919 56198455 56197919 ID=Msa0213360-mRNA-1:exon:15630;Parent=Msa0213360-mRNA-1
chr2_1 exon 56198586 56198696 56198586 ID=Msa0213360-mRNA-1:exon:15629;Parent=Msa0213360-mRNA-1
chr2_1 exon 56199219 56199293 56199219 ID=Msa0213360-mRNA-1:exon:15628;Parent=Msa0213360-mRNA-1
chr2_1 exon 56199744 56199838 56199744 ID=Msa0213360-mRNA-1:exon:15627;Parent=Msa0213360-mRNA-1
chr2_1 exon 56200189 56200212 56200189 ID=Msa0213360-mRNA-1:exon:15626;Parent=Msa0213360-mRNA-1
chr2_1 exon 56200303 56200463 56200303 ID=Msa0213360-mRNA-1:exon:15625;Parent=Msa0213360-mRNA-1
chr2_1 exon 56201076 56201139 56201076 ID=Msa0213360-mRNA-1:exon:15624;Parent=Msa0213360-mRNA-1
chr2_1 exon 56202010 56202104 56202010 ID=Msa0213360-mRNA-1:exon:15623;Parent=Msa0213360-mRNA-1
chr2_1 exon 56202332 56203158 56202332 ID=Msa0213360-mRNA-1:exon:15622;Parent=Msa0213360-mRNA-1
chr2_1 exon 56203250 56203292 56203250 ID=Msa0213360-mRNA-1:exon:15621;Parent=Msa0213360-mRNA-1
chr2_1 exon 56203386 56203549 56203386 ID=Msa0213360-mRNA-1:exon:15620;Parent=Msa0213360-mRNA-1
chr2_1 exon 56204559 56204622 56204559 ID=Msa0213360-mRNA-1:exon:15619;Parent=Msa0213360-mRNA-1
chr2_1 exon 56204678 56204836 56204678 ID=Msa0213360-mRNA-1:exon:15618;Parent=Msa0213360-mRNA-1
chr2_1 five_prime_UTR 56204678 56204836 56204678 ID=Msa0213360-mRNA-1:five_prime_utr;Parent=Msa0213360-mRNA-1
chr2_1 five_prime_UTR 56204559 56204622 56204559 ID=Msa0213360-mRNA-1:five_prime_utr;Parent=Msa0213360-mRNA-1
chr2_1 five_prime_UTR 56203386 56203549 56203386 ID=Msa0213360-mRNA-1:five_prime_utr;Parent=Msa0213360-mRNA-1
chr2_1 five_prime_UTR 56203250 56203292 56203250 ID=Msa0213360-mRNA-1:five_prime_utr;Parent=Msa0213360-mRNA-1
chr2_1 five_prime_UTR 56202332 56203158 56202332 ID=Msa0213360-mRNA-1:five_prime_utr;Parent=Msa0213360-mRNA-1
chr2_1 five_prime_UTR 56202010 56202104 56202010 ID=Msa0213360-mRNA-1:five_prime_utr;Parent=Msa0213360-mRNA-1
chr2_1 five_prime_UTR 56201076 56201139 56201076 ID=Msa0213360-mRNA-1:five_prime_utr;Parent=Msa0213360-mRNA-1
chr2_1 five_prime_UTR 56200361 56200463 56200361 ID=Msa0213360-mRNA-1:five_prime_utr;Parent=Msa0213360-mRNA-1
chr2_1 CDS 56200303 56200360 56200303 ID=Msa0213360-mRNA-1:cds;Parent=Msa0213360-mRNA-1
chr2_1 CDS 56200189 56200212 56200189 ID=Msa0213360-mRNA-1:cds;Parent=Msa0213360-mRNA-1
chr2_1 CDS 56199744 56199838 56199744 ID=Msa0213360-mRNA-1:cds;Parent=Msa0213360-mRNA-1
chr2_1 CDS 56199219 56199293 56199219 ID=Msa0213360-mRNA-1:cds;Parent=Msa0213360-mRNA-1
chr2_1 CDS 56198667 56198696 56198667 ID=Msa0213360-mRNA-1:cds;Parent=Msa0213360-mRNA-1
chr2_1 three_prime_UTR 56198586 56198666 56198586 ID=Msa0213360-mRNA-1:three_prime_utr;Parent=Msa0213360-mRNA-1
chr2_1 three_prime_UTR 56197919 56198455 56197919 ID=Msa0213360-mRNA-1:three_prime_utr;Parent=Msa0213360-mRNA-1
Gene Sequence

>Msa0213360

ATGATGAAGATGTTGCAGCAGTTGCCTGGACTATTGAGCAACATTGGACCTGCTGCAGATAGCATTCTTGATCCTGACGAAGGCTTTGAACTCAGTGACATTTTGAAGCCTGATCTGATATTGCCATTATTGGAGACGTTACCATTGGAGCAGCGTCTAGCTTCCTATTTACCAGAGAAAACAGTGTGGCTTTCTATATTTTACATGTGTATACCAAAGGGATATGCAATTGGCTATGTATATGGTGGAGTGGTTGTATTTGGGAAATGGGAAAACTCTTGA
Protein sequence

>Msa0213360

MMKMLQQLPGLLSNIGPAADSILDPDEGFELSDILKPDLILPLLETLPLEQRLASYLPEKTVWLSIFYMCIPKGYAIGYVYGGVVVFGKWENS*